Build: #3 failed
Job: Pip-Audit Many Linux 2.34 Rocky 9.5 Py 3.12 failed
Code commits
Casa6
-
Srikrishna Sekhar 9eede3a21f1d4e6e61185ac7568ebc0a3563656f
Pull request #1056: CAS-13898
Merge in CASA/casa6 from CAS-13898 to master
* commit '81f8d50803a4f8d4ceb2d5dfecd8e67f25d11658':
CAS-13898 : Fix memory allocation per-plane
CAS-13898 : Re-use getMemoryAvailable from appRC
CAS-13898 : remove unnecessary temp image allocs -
Dirk Petry <dpetry@eso.org> 7942d3c489c3dd85ce20bcfce026db5ee274f373
Pull request #1057: CAS-14808: improved task messaging, added unit test case testSky_sdObs_noise, updated stakeholder tests
Merge in CASA/casa6 from CAS-14808 to master
* commit 'fd028a1e11a9a712747c80c3508fd96597a93a87':
CAS-14808: improved task messaging, added unit test case testSky_sdObs_noise, updated stakeholder tests -
Bob Garwood 350d94ec32491983c2ac6a838a3d80a0a5c85748
Pull request #1058: CAS-14743
Merge in CASA/casa6 from CAS-14743 to master
* commit 'cf36a43bb30fdb33b15f44d8c7f1102b036e1475':
remove hosts example
fixed two typos
updated getandposalma.xml
additional edits of getantposalma.xml descriptions
edited getantposalma.xml short and long parameter descriptions -
Dirk Petry <dpetry@eso.org> fd028a1e11a9a712747c80c3508fd96597a93a87
CAS-14808: improved task messaging, added unit test case testSky_sdObs_noise, updated stakeholder tests
- casatasks/src/private/task_simobserve.py (version fd028a1e11a9a712747c80c3508fd96597a93a87) (diffs)
- casatasks/tests/tasks/test_task_simobserve.py (version fd028a1e11a9a712747c80c3508fd96597a93a87) (diffs)
- casatests/regression/test_regression_sim_TP.py (version fd028a1e11a9a712747c80c3508fd96597a93a87) (diffs)
- casatests/regression/test_regression_sim_components_and_skymodel.py (version fd028a1e11a9a712747c80c3508fd96597a93a87) (diffs)
-
Bob Garwood cf36a43bb30fdb33b15f44d8c7f1102b036e1475 m
remove hosts example
-
Srikrishna Sekhar 81f8d50803a4f8d4ceb2d5dfecd8e67f25d11658
Merge remote-tracking branch 'origin/master' into CAS-13898
-
George Moellenbrock 29b9e60ff5efac7662bc3995bc056d79878deb05
Pull request #1054: CAS-14760
Merge in CASA/casa6 from CAS-14760 to master
* commit 'f6c71604a20604d7cdcacee8328f8a19cef05238':
For CAS-14760, for cross-hand delay solutions, ensure that FFT padding calculations yield positive channel axis length for LSB spws. -
George Moellenbrock f6c71604a20604d7cdcacee8328f8a19cef05238
Merge branch 'master' into CAS-14760
-
Dirk Petry <dpetry@eso.org> 059b8ab234522648c1fb903cb3dd576ba9a4b65b
Pull request #1052: CAS-14694
Merge in CASA/casa6 from CAS-14694 to master
* commit '6f1345ac52f7252da24ccdc916163333039734d1':
For CAS-14694: In SolvableVisCal::setSimulate, for simulation of DJones only, short-circuit VI major and minor iteration over the MS so that instrumental polarization is neither time- nor (for mosaic sims) field-dependent. This breaks 'testSky_intLeak' in test_task_simobserve.py. NB: this is not yet a complete polarimetry simulation because parang is not yet treated.
CAS-14694: update simobserve task built-in help for leakage parameter
CAS-14694: make simobserve produce full-pol simulation when input model image is full-pol, independent of leakage
CAS-14694: activated test case testNZ_intMan_Leak and made sure leakage is only applied for obsmode='int'
Enable teardown for test_task_simobserve
CAS-14694: Made ANoise::nPar() in AMueller.h return 4 instead of 2.
CAS-14694: changes which seem to solve the remaining problems
CAS-14694: reverted use of sm.setfeed in simobserve task
CAS-14694 modified the task script to make appropriate sm tool calls when leakage>0 -
Bob Garwood 59a02e6c0dc2c222d2ca62c27a3a742928726b2a m
fixed two typos
-
George Moellenbrock 6f1345ac52f7252da24ccdc916163333039734d1
For CAS-14694: In SolvableVisCal::setSimulate, for simulation of DJones only, short-circuit VI major and minor iteration over the MS so that instrumental polarization is neither time- nor (for mosaic sims) field-dependent. This breaks 'testSky_intLeak' in test_task_simobserve.py. NB: this is not yet a complete polarimetry simulation because parang is not yet treated.
-
Rui Xue 8f5e9581750c4df973277e17e3e5d999f318e7f7
Pull request #1030: CAS-14758: Optimize image processing by caching tool handles in fill_summary_minor to avoid redundant open/close operations
Merge in CASA/casa6 from CAS-14758 to master
* commit 'a46b0fa46be4985558dfe705e9f2eccf577b4aed':
CAS-14758: Handle missing residual images when constructing minor cycle summary
CAS-14758: Optimize image processing by caching tool handles in fill_summary_minor to avoid redundant open/close operations -
Rui Xue 44d9e7387ac3f53b7841b93a583e1354e361c06f
Pull request #1040: CAS-14622
Merge in CASA/casa6 from CAS-14622 to master
* commit '6599d358e517e2dc3f94260a0d8770dd0cc64964':
CAS-14622: Fix out-of-bounds MPI segmentation faults in BriggsCubeWeightor
CAS-14622: Fix ncores-dependent tclean segmentation fault in `BriggsCubeWeightor` -
Bob Garwood 23e4ed702d08a630d8c9c6e2e871e04dd0ba284e m
updated getandposalma.xml
-
Dirk Petry <dpetry@eso.org> e9db1cf9435f211d68a67190f8e650670a5de0eb
CAS-14694: update simobserve task built-in help for leakage parameter
-
Dirk Petry <dpetry@eso.org> 567c15cd27e8383205d3d8cee02a0be9b68ef5c4
Merge branch 'master' into CAS-14694
-
Akeem Wells 6599d358e517e2dc3f94260a0d8770dd0cc64964
Merge branch 'master' into CAS-14622
-
Bob Garwood 3f49f7503b516f27ec0cf65423a7a9e51c238085
Pull request #1049: CAS-14792
Merge in CASA/casa6 from CAS-14792 to master
* commit 'c4206a386e84fa23a749f5b95753860d36396bd7':
added more text to describe the measures data install step
readme.md uses www.astron.nl now for measures data -
Akeem Wells c4206a386e84fa23a749f5b95753860d36396bd7
Merge branch 'master' into CAS-14792
-
Kumar Golap 4d6918c6411688aeb8ab0b8b75ff610cb4885d89
Pull request #1048: when resetting image center the coordinate system was not being reset
Merge in CASA/casa6 from CAS-14747 to master
* commit '3c5bde23464661fe96ff365766465083f95adafd':
when resetting image center the coordinate system was not being reset -
Bob Garwood 3493dc9839d8a596467d534b28d465c141bc35b2
added more text to describe the measures data install step
-
Bob Garwood 632ee87ba92665433856b99c66e70e590c1fff99
readme.md uses www.astron.nl now for measures data
-
George Moellenbrock 19feb75bf2d3028883ee9f96b7315be4bf3ff319 m
For CAS-14760, for cross-hand delay solutions, ensure that FFT padding calculations yield positive channel axis length for LSB spws.
-
Srikrishna Sekhar a46b0fa46be4985558dfe705e9f2eccf577b4aed m
Merge remote-tracking branch 'origin/master' into CAS-14758
-
Dirk Petry <dpetry@eso.org> 84f01fe0d32bbe506c9c0a9eb98a6b79da1636e8 m
CAS-14694: make simobserve produce full-pol simulation when input model image is full-pol, independent of leakage
-
Kumar Golap 3c5bde23464661fe96ff365766465083f95adafd m
when resetting image center the coordinate system was not being reset
-
Akeem Wells fe4695a054c35ccb9b648d91e0871c322bc267ad m
Merge branch 'master' into CAS-14622
-
Rui Xue ce691fac04de68e393cb9495357f72e9271ff892 m
CAS-14758: Handle missing residual images when constructing minor cycle summary
-
Srikrishna Sekhar ff635a9a893262d4b6ccfedd1e71fd9b3eb69a79 m
CAS-13898 : Fix memory allocation per-plane
The previous fix to pass in the available memory into auto-multithresh
did not work as expected, because the per-plane memory budget never
exceeds the total.
This fix divides the total memory budget by the estimated number of
planes used in the algorithm, and passes that in to the Lattice images.
This correctly seems to restrict the memory usage.
From initial benchmarking, memory limits are now respected as expected. -
Srikrishna Sekhar b21db203ff9a81fab1705c7a18cd11f9c9f9008a m
CAS-13898 : Re-use getMemoryAvailable from appRC
So now automultithresh should pick up the right memory limits
internally. -
Srikrishna Sekhar 67f8561f0cc6a4bbfda4c2a8172205b76ff29fcc m
CAS-13898 : remove unnecessary temp image allocs
Removed two temporary images that have memory allocated but are never
used. This seems to have brought down total memory usage by 20-30% for
auto-multithresh. -
Rui Xue f03ba5194e6eaca95fb699a2fa3cccd2c7658cbf m
CAS-14758: Optimize image processing by caching tool handles in fill_summary_minor to avoid redundant open/close operations
-
Rui Xue 8fbe09615738a7a02c5c218a2ba4598911874183 m
CAS-14622: Fix out-of-bounds MPI segmentation faults in BriggsCubeWeightor
The SynthesisImager uses BriggsCubeWeightor to compute weights for the image cube. During distributed MPI execution (`ncores > 1`), the output cube's spectral axis is partitioned across multiple nodes into smaller local subcubes.
When evaluating MS data channels, `GridFT::channelMap` maps the visibilities' frequencies into the local subcube's channel indices. If an MS contains dataset frequencies (e.g., from large Doppler swings or wide ephemeris velocity changes) that land *above* the local MPI subcube's maximum channel, `channelMap` returns an index exceeding the local array bounds.
Previously, BriggsCubeWeightor only checked the lower bound (`chanMap(chn) > -1`) before using the calculated index to access `wgtDensity` and the `f2_p`/`d2_p` arrays. Accessing these arrays with indices belonging to higher MPI partitions resulted in unconstrained out-of-bounds memory accesses, causing silent heap corruption or explicit Segmentation Faults, heavily dependent on the MPI slicing and dataset footprint.
This commit resolves the issue by introducing strict upper-bound channel footprint constraints (`chanMap(chn) < shape()[3]`) in both `weightUniform` and `getWeightUniform`. Data channels that mathematically fall outside the upper bounds of the local MPI partition are now securely ignored. -
Rui Xue 3000ee0fe103736833f139a6c7dbdf3eca4abb82 m
CAS-14622: Fix ncores-dependent tclean segmentation fault in `BriggsCubeWeightor`
The SynthesisImager uses `BriggsCubeWeightor` to compute weights for the image cube. During this calculation, `BriggsCubeWeightor::cube2Matrix` extracts raw storage pointers `pcube` and `pflags` from `casacore::Array::getStorage(deleteIt)`.
Previously, the code incremented these exact pointers (`*pflags = *pcube++`) during array traversal. At the end of the function, the incremented pointers were passed directly to `freeStorage()` and `putStorage()`.
When array memory isn't contiguous (which occurs when data is sliced across MPI ranks), `getStorage()` allocates a temporary buffer and sets `deleteIt = true`. Passing the shifted pointer into `freeStorage()` invokes `delete[]` on an invalid memory address, causing heap corruption and a Segmentation fault randomly depending on the data slicing.
This commit resolves the issue by securely caching the original pointers returned from `getStorage` into distinct variables. The traversal loops now use separate copies of these pointers, enabling the original allocation addresses to be correctly evaluated and freed by `freeStorage()` and `putStorage()`. -
Bob Garwood 648a3f0bdd7c9c434550da6997b9adc7b298a84c m
additional edits of getantposalma.xml descriptions
-
Bob Garwood 74796d6ec504ca9aa42c63c9c6da46fdb890661a m
edited getantposalma.xml short and long parameter descriptions
-
Dirk Petry <dpetry@eso.org> 4726346e973f5a3c785530a712e2479ff0ce3e3f m
Merge branch 'CAS-14694' of https://open-bitbucket.nrao.edu/scm/casa/casa6 into CAS-14694
-
Dirk Petry <dpetry@eso.org> c0d3e7a5d5bde00a576b1eda1affede4b660df06 m
CAS-14694: activated test case testNZ_intMan_Leak and made sure leakage is only applied for obsmode='int'
-
Dirk Petry <dpetry@eso.org> c896f72b5b4c031a88ef6ae292bd578e7fe5e4bd m
CAS-14694: Merge branch 'master' into CAS-14694
-
Akeem Wells 5531296aa4fcd61a0f096539e16d116479b6af64 m
Enable teardown for test_task_simobserve
-
Dirk Petry <dpetry@eso.org> 6656f07b8b82cc43b7f3bad62eaaf936fa1d4f2b m
CAS-14694: Made ANoise::nPar() in AMueller.h return 4 instead of 2.
-
Dirk Petry <dpetry@eso.org> b2d9854421f55b26faaec5b843a0d835ebc6feb7 m
CAS-14694: changes which seem to solve the remaining problems
- casatasks/src/private/task_simobserve.py (version b2d9854421f55b26faaec5b843a0d835ebc6feb7) (diffs)
- casatasks/tests/tasks/test_task_simobserve.py (version b2d9854421f55b26faaec5b843a0d835ebc6feb7) (diffs)
- casatools/src/code/synthesis/MeasurementComponents/AMueller.h (version b2d9854421f55b26faaec5b843a0d835ebc6feb7) (diffs)
- casatools/src/code/synthesis/MeasurementEquations/VisEquation.cc (version b2d9854421f55b26faaec5b843a0d835ebc6feb7) (diffs)
-
Dirk Petry <dpetry@eso.org> 99c16562c6617e2ce5918f6121fa25e7a1c18081 m
CAS-14694: Merge branch 'master' into CAS-14694
-
Dirk Petry <dpetry@eso.org> 557f387d9d81ba63eddc060f38e9fccd38d2f296 m
CAS-14694: reverted use of sm.setfeed in simobserve task
-
Dirk Petry <dpetry@eso.org> d502a409320f4c50964c3df924bde31e1737814f m
CAS-14694 modified the task script to make appropriate sm tool calls when leakage>0