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Code commits
CASA6
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Kumar Golap 2cb32bcb39e5744aa06c93ace2cc9cc089a1de6d
Pull request #1024: CAS-14672
Merge in CASA/casa6 from CAS-14672 to master
* commit '7939dcd2725a8f21a815277e7ded37f038d9e00b':
mode mvc was not synchronising the number of major cycles in the PySynthesisImager object that does the mfs deconvolution -
Akeem Wells 6646c9ff1254ab7d1282e14df56990a642278a70
Pull request #1023: CAS-14542
Merge in CASA/casa6 from CAS-14542 to master
* commit '3525ae31ab2256d91b1b75132368ce6dc74b3d10':
Move Bamboo function to atlassian_helper. Minor fix to pytest command line checking. Syntax updates
Add skipped plotweather tests to main test suite
Comment out skipped tests in plotbandpass. Update component map
Extend Checking of Skips to classes. Add Documentation
Add new pytest command line option to override skip -
Victor de Souza Magalhaes 61020062cee290f5466cffed5ec5032e0c7a3434
Pull request #1022: CAS-14642
Merge in CASA/casa6 from CAS-14642 to master
* commit 'd33b16358c14e79b73a2ef239c1ac5b8c64ec017': (81 commits)
Removed long description and exampels from xml/pccor.xml
Added a time range without a explicit date, removed tests that used fallback_to_fringefit.
Removed parameter fallback_to_fringefit.
Fixed a typo in pccor.xml and also added an example using a timerange with no explicit date.
PCCOR timerange now supports a initial time without a date (the first date of the ms is used in this case).
Prepended the name of all private pccor functions with _pccor_.
Changed test_solutionValues tolerance to 1e-5.
Changed tolerance on test_solutionValues and also added more relevant metrics to evaluate failure.
Changed test_solutionValues test to use np.allclose rather than testing that np arrays are equal.
Update test_task_pccor to replace try statements with assertRaises. Split tests into multiple test cases. Add test_task_pccor to component map
Added test on split MSes.
Changed missing_pc_data string parameter to a boolean called fallback_to_fringefit.
Tagged scans and field_ids as NaNs for pulse cal times in which no visibilities exist in the MS, which lets me filter them out when saving data to the on disk pulse_cal table, the solutions are still available in the return_dict.
Added setup and teardown methods to test_task_pccor.py
Implemented test_solutionValues in test_task_pccor.py
Implemented test_provideFringeFitTable in test_task_pccor.py
Fixed raising of RuntimeError when given fringefit caltable and requested timerange are incompatible.
Added test_parseScanAndTimerange to test_task_pccor.py
Improved timerange parsing and changed a generic exception to a ValueError.
Implemented parseSpw test.
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Akeem Wells 3525ae31ab2256d91b1b75132368ce6dc74b3d10
Merge branch 'master' into CAS-14542
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Victor de Souza Magalhaes d33b16358c14e79b73a2ef239c1ac5b8c64ec017 m
Removed long description and exampels from xml/pccor.xml
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Akeem Wells 53abfaf45c7df61270a24abf717c0a1991be5fd2 m
Move Bamboo function to atlassian_helper. Minor fix to pytest command line checking. Syntax updates
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Kumar Golap 7939dcd2725a8f21a815277e7ded37f038d9e00b m
Merge branch 'master' into CAS-14672
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Akeem Wells fc3e2a3d40b711ded93b9cb62f97fbf781d540c1 m
Add skipped plotweather tests to main test suite
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Akeem Wells 2045be1ccc0a8eff32890fa1d24f86bb4492e3ce m
Merge branch 'master' into CAS-14542
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Akeem Wells 71c3d880e4771c8bda89ae8ed24cbd6bde165f77 m
Merge branch 'master' into CAS-14542
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Akeem Wells 5ff2cd575af435a3ed87a1bac1281e664b012e36 m
Merge branch 'master' into CAS-14642
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Victor de Souza Magalhaes 61c72d82000f8e9bab3f0ba8c446bd2978a280f4 m
Added a time range without a explicit date, removed tests that used fallback_to_fringefit.
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Victor de Souza Magalhaes 7377abed9479bc21948ff7db3796153f85582b3d m
Removed parameter fallback_to_fringefit.
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Victor de Souza Magalhaes 7a2663701cc3b3dce3f4fbb2078486ec3b6d39a9 m
Fixed a typo in pccor.xml and also added an example using a timerange with no explicit date.
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Victor de Souza Magalhaes 9ff94c539c36ef3336af610f6925cf4347723fc5 m
PCCOR timerange now supports a initial time without a date (the first date of the ms is used in this case).
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Victor de Souza Magalhaes 0ccfb1f97c5f8dbec7c6017ed38f6d3965281a76 m
Prepended the name of all private pccor functions with _pccor_.
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Akeem Wells 596a07a11325092ffa39778b74652f5cdca3e426 m
Merge branch 'master' into CAS-14542
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Victor de Souza Magalhaes 7c92cd45433dd8e4597e34fa13a05ceb78d55eb1 m
Changed test_solutionValues tolerance to 1e-5.
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Victor de Souza Magalhaes 81b51496b2a56bb8c293d4e10e069a7def07c0d2 m
Changed tolerance on test_solutionValues and also added more relevant metrics to evaluate failure.
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Victor de Souza Magalhaes cc4015f1c55bfb3d28f0350f624efca27b413c48 m
Changed test_solutionValues test to use np.allclose rather than testing that np arrays are equal.
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Akeem Wells 03dafe469b22a6a926129c391d3c61104b45840b m
Merge branch 'master' into CAS-14642
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Akeem Wells 0f4ff90bfa56291ea53658e77fcd5a76d3c789b9 m
Update test_task_pccor to replace try statements with assertRaises. Split tests into multiple test cases. Add test_task_pccor to component map
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Victor de Souza Magalhaes 288c67ace1f7d7c3325b377d90f4e2778352e464 m
Added test on split MSes.
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Victor de Souza Magalhaes dcaf39c5a3ad78c6fc6a99b8999da9215735dcc0 m
Changed missing_pc_data string parameter to a boolean called fallback_to_fringefit.
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Victor de Souza Magalhaes eaefd5acb22a2b20ce369c0c604d326f6171deb5 m
Tagged scans and field_ids as NaNs for pulse cal times in which no visibilities exist in the MS, which lets me filter them out when saving data to the on disk pulse_cal table, the solutions are still available in the return_dict.
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Victor de Souza Magalhaes 2ab6d23e3927fdd4eb9b632a2ff19f588c86f502 m
Added setup and teardown methods to test_task_pccor.py
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Victor de Souza Magalhaes 331921e0e0a7a9b9f4416f079991eab3f89eed5e m
Implemented test_solutionValues in test_task_pccor.py
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Victor de Souza Magalhaes 513452505270e74f4006987e9f15b190f4429f12 m
Implemented test_provideFringeFitTable in test_task_pccor.py
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Victor de Souza Magalhaes 2de72124264f16ea2f6df51537c587114c1dcfe2 m
Fixed raising of RuntimeError when given fringefit caltable and requested timerange are incompatible.
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Victor de Souza Magalhaes 3d307d8fd9cc96e57b6c9fcf23c1d21187448f5a m
Added test_parseScanAndTimerange to test_task_pccor.py
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Victor de Souza Magalhaes ace2cd4ef801a811d9c71ccda62da9eaebbc8ba0 m
Improved timerange parsing and changed a generic exception to a ValueError.
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Akeem Wells c21fcb3865d8af3d90fb4a9e1560756ec2b04c96 m
Comment out skipped tests in plotbandpass. Update component map
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Victor de Souza Magalhaes c91c92f72bef77ea288271a2def90b3b80e0132f m
Implemented parseSpw test.
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Victor de Souza Magalhaes a3392cc2c23b1d57dfa545fbb8ace90f30fde82b m
Improved SPW parsing, changed some more exception types, removed duplicate SEVERE messages.
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Victor de Souza Magalhaes 5a558dd5a42eec4128192ef02462a40e3b582e7d m
Added test about antenna parsing.
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Victor de Souza Magalhaes 8c5d94c8f9fbd83df49d8ed37ca8a56861506d2c m
Changed the type of exception thrown to more specific exceptions.
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Victor de Souza Magalhaes 4a711ec117c2226ad13f7343f4e7c79c6f6e3292 m
Added default variables to simplify the writing of tests and also added test for missing refant pc data.
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Victor de Souza Magalhaes db40677dbc20d5a964e49ce38c7eb2c1491507c1 m
Missing data for reference antenna now triggers RuntimeError rather than a bare exception.
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Victor de Souza Magalhaes a7339ba1e7f8080ec6b4f64d6329c15adbf1e86b m
Improved test_missingPcDataUseFringefit in test_task_pccor.py
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Victor de Souza Magalhaes d18d6f1d6c7c611a79931f408669c87204e15806 m
pccor now uses ff solutions explicitly when no pc_data is available.
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Victor de Souza Magalhaes 3536b80a164d2ef4c7135a0abc3931767f9bb13a m
First 3 tests
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Victor de Souza Magalhaes acd7b16e4c711da09529f45779b1b40d7a3f12f8 m
Created skeleton for test_task_pccor.py
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Victor de Souza Magalhaes 860cf9cfc145bf43379fc9d8a093ba05ac4160c9 m
Time, scan and field_id for the single fringefit solution that is to be used when no pc data is available has now been correctly set to the same time, scan and field_id as the fringefit solution.
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Victor de Souza Magalhaes 54b62d0b1b1821dac8f2ab2bdd9e0cf872d92890 m
Protected pccor from non-existent phase_cal subtable
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Akeem Wells 3e35e6c71f548af9dbd5094166d2580f4ca72595 m
Extend Checking of Skips to classes. Add Documentation
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Victor de Souza Magalhaes ef542aef77e99d0b0123e8ade64b216e38adf661 m
PCCOR now uses casalog priorities to produce warnings and error messages.
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Akeem Wells 638e705faaf26ae28f95c58359cd28a27e3b8c0f m
Add new pytest command line option to override skip
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Victor de Souza Magalhaes 30f03c0c6f831b2cc20f6efb7bf1f8a4fc6ad0bc m
Added detailed description of missing_pc_data parameter.
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Victor de Souza Magalhaes dd5c0fe4e7d065cff90b193b245cdb71890a1513 m
Added some basic documentation for missing pc data parameter.
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Victor de Souza Magalhaes fc12822419af3ab7c5b60c457260bee1be36b808 m
Implemented using fringe fit solution as a backup in the case of missing PC data for a antenna/SPW combination, if there is no refant data and exception is thrown.
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Victor de Souza Magalhaes 556d018f8af27b7db3262b5092b6176366ed81ee m
added examples and missing data cases description to pccor.xml
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Victor de Souza Magalhaes 3c03393e743ebf0d492ec84516c1ec21961702f1 m
Added long description for the pccor task parameters to pccor.xml.
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Victor de Souza Magalhaes 92fe8d7a4f59dab00a89aa05b9533ac05816b1c7 m
Added a description of the pccor task to pccor.xml.
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Victor de Souza Magalhaes 03b8ffd45ed38a6280d45ad4d8415d7af0d1466c m
Addressed overly long lines.
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Victor de Souza Magalhaes d03b57fdbaf09b79a58ad49df833013b40207dc0 m
Added docstrings to functions
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Victor de Souza Magalhaes d365a595461cbece018e49e69bc65b46a00b5712 m
Removed unused imports.
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Victor de Souza Magalhaes a4382c81156562876f8a0e860f9c0571fdaa212a m
Added protections against missing pc cal data.
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Victor de Souza Magalhaes 5f77eb95fa557c31c9f8ade957e86081001e0059 m
Replaced print statements with casalog calls.
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Victor de Souza Magalhaes 8ffe3182fae14067039b68e6fc4d993b59911c64 m
Reorganization
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Victor de Souza Magalhaes ce0c9a55c77329b929da86667588372e689f4fea m
Removed obsolete code
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Victor de Souza Magalhaes 9bdda7f51b1c22e676c78a3f7d5de51e6d402c63 m
Managed phase alignment between SPWs by simply using the Fringe fit phase plus any variation in phase between solution interval and current time.
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Victor de Souza Magalhaes f74aa026eefd589bec666e3c1e8affb38123d593 m
Propagated changes on metadata parsing throughout
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Victor de Souza Magalhaes e39e3c12f13622763b49e1e81d3766e699ad0fd9 m
Improved user interface by adding spw, antenna, timerange and scan parameters, propagation of changes still need to be done.
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Victor de Souza Magalhaes a9476510d84acdbecfd51b73bd5d76da2375ed6d m
CASA's fringefit execution is now confined to a dedicated function.
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Victor de Souza Magalhaes 22d79cbb740c48c161234c832d6972bdac1c7b81 m
Cosmetics
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Victor de Souza Magalhaes 0efd0ddc6797ca18140d15d2cf78fcab6da1f393 m
Rewrote code that produces output cal table so that data is sorted by time then spw then antenna.
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Victor de Souza Magalhaes 5cca8646734ee0a9b1dea41676f6ae9b6f06ca5c m
Implemented direct use of fringe fit task inside pccor.
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Victor de Souza Magalhaes 9b451e103c21054ec9cbb6f5d2bbf48f00eaeb39 m
Added refant referencing and padding in rough fringe fit.
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Victor de Souza Magalhaes bef8e6eba58ed642fe6ad55fc8b213ebace73d3d m
Fixed boolean issue on XML file.
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Victor de Souza Magalhaes 859ddc9f8c2eb5599d2e60380aac165f83a72da8 m
Enriched return dictionary
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Victor de Souza Magalhaes a32c408743ecda07322e10c398b0d73b3bb45cc8 m
added mode where user does not to give an input fringe fit table.
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Victor de Souza Magalhaes d5750156ac15f268ca5be4a2a12e35603c4d0181 m
Cosmetics.
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Victor de Souza Magalhaes dfb1162be18b40cd3371ab6e46530464fc06c5ef m
Some cleaning up
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Victor de Souza Magalhaes c8574a7c08649376e37d58fc1ceccf1902247ef8 m
Added cablecal corrections
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Victor de Souza Magalhaes ecde71bc39a14e3f95d55f969c74778df32844cb m
Output cal table now has proper scan and field id values from optimized scan time table creation.
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Victor de Souza Magalhaes 5a0a6eb86abfb760ba5cab3b0c1dd181fc734d69 m
Full stack of pccor for solutions using fringe fit.
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Victor de Souza Magalhaes 87264f83f681c6cb22cf942123589eed762726bf m
Full stack of pccor for solutions using fringe fit.
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Victor de Souza Magalhaes 685cc7c5d7f3508e9751a518283489cea3e552cc m
Structured fringe fit table read.
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Victor de Souza Magalhaes ab2d967170d7addf9712acf6355836dfc2fbb1f0 m
Improved metadata fetching routines.
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Victor de Souza Magalhaes 29880d39c4118272f433091adcfa6c532f5e56e8 m
Delay from visibilities now ignores cross hands.
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Victor de Souza Magalhaes d1df7733a1592f92b0611ef300896eae6d87a379 m
Fixed typo in equations
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Victor de Souza Magalhaes 59e9dd60a2e0bed337b0b1da3730418592917931 m
Implemented refant stuff
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Victor de Souza Magalhaes b5438447d5ed6770cbd08734736af9a68c9361d0 m
Created a routine to write proper results to a cal table
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Victor de Souza Magalhaes 495bd322c06ab6f094676292b8d9b5ec2e034f42 m
All processing up to computing adjusted delays using multiband delays.
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Victor de Souza Magalhaes 0341755556646c42eae9de7a1de4e2ce858786c8 m
Implemented the processing of 1 antenna up to multiband delay.
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Victor de Souza Magalhaes ba86c6cf2521d73e2ed7a1fb620d6c9defc773e7 m
Small progress towards obtaining unambiguous visibility delays
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Victor de Souza Magalhaes ad2b8af3c01939b4554aacb5af284ea4434150ad m
Routine to estimate antenna delays from visibilities using fft and least squares
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Victor de Souza Magalhaes d5162901b28fd8965cc608d5a52aaf6beb325ce8 m
Further progress on 2 tones processing of pccor
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Victor de Souza Magalhaes 6db163e621d701e12d7bd0fdeba4caedff252f11 m
Fetching of channel information + start of a new processing routine more in line with what is done in AIPS
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Victor de Souza Magalhaes a573e0aadcf87784112633416da04e79aefb363b m
Added user refant selection, improved meta_data fetching.
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Victor de Souza Magalhaes 89e7e0203d0ac90f0f294132c50f4e758716c4a4 m
Cosmetics.
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Kumar Golap 90d40a33330c404d715415665c3b03151eda508c m
mode mvc was not synchronising the number of major cycles in the PySynthesisImager object that does the mfs deconvolution
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Victor de Souza Magalhaes 55597d8e3c5e167718eb990c1f27633a20f56f9a m
Evolved printing of dictionaries, created new reading routine for pulse cal data that breaks into nested dicts.
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Victor de Souza Magalhaes f303612fbc1c19169cf4de3b38156f423614098a m
Added casatools imports and some name changing and debugging.
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Victor de Souza Magalhaes 63f02b72adafa011c8dec37061e784b6db1ebf56 m
Added pccor.xml to setup.py
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Victor de Souza Magalhaes 25d68f240773e76a43f59e288601ead93dc227c8 m
skeleton of a pccor.xml and some parameter name changing in task_pccor.py
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Victor de Souza Magalhaes 979ba8e2877fc5b4cc0448d6c07cf2598fb95880 m
Created task file for pccor