Build: #13 did not complete

Job: Build and Package Many Linux 2.28 did not complete

Build log

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12-Mar-2024 09:32:12 Build CASA - CMake Release Build Casalith 6.6+ - release-6.6.1 - Build and Package Many Linux 2.28 #13 (CASA-CRBC661-BPML228-13) is being prepared for building on agent cbt-el7-8.cv.nrao.edu, bamboo version: 9.2.7
12-Mar-2024 09:32:12 Remote agent on host cbt-el7-8.cv.nrao.edu
12-Mar-2024 09:32:12 Build working directory is /export/home/cbt-el7-8/bamboohome/xml-data/build-dir/CASA-CRBC661-BPML228
12-Mar-2024 09:32:12 Executing build CASA - CMake Release Build Casalith 6.6+ - release-6.6.1 - Build and Package Many Linux 2.28 #13 (CASA-CRBC661-BPML228-13)
12-Mar-2024 09:32:12 Starting task 'Clean working directory task' of type 'com.atlassian.bamboo.plugins.bamboo-artifact-downloader-plugin:cleanWorkingDirectoryTask'
12-Mar-2024 09:32:12 Cleaning working directory '/export/home/cbt-el7-8/bamboohome/xml-data/build-dir/CASA-CRBC661-BPML228'
12-Mar-2024 09:32:12 Finished task 'Clean working directory task' with result: Success
12-Mar-2024 09:32:12 Running pre-build action: Build Log Labeller Pre Build Action
12-Mar-2024 09:32:12 Running pre-build action: VCS Version Collector
12-Mar-2024 09:32:12 Build CASA - CMake Release Build Casalith 6.6+ - release-6.6.1 - Build and Package Many Linux 2.28 #13 (CASA-CRBC661-BPML228-13) started building on agent 'cbt-el7-8.cv.nrao.edu' (Remote agent on host cbt-el7-8.cv.nrao.edu)
12-Mar-2024 09:32:12 Starting task 'Create cache and wheeldirectory' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script'
12-Mar-2024 09:32:12
Beginning to execute external process for build 'CASA - CMake Release Build Casalith 6.6+ - release-6.6.1 - Build and Package Many Linux 2.28 #13 (CASA-CRBC661-BPML228-13)'
... running command line:
/export/home/cbt-el7-8/bamboohome/temp/CASA-CRBC661-BPML228-13-ScriptBuildTask-7615832934894671067.sh
... in: /export/home/cbt-el7-8/bamboohome/xml-data/build-dir/CASA-CRBC661-BPML228
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12-Mar-2024 09:32:13 mkdir: cannot create directory ‘../ccache_ml2014’: File exists
12-Mar-2024 09:32:13 Finished task 'Create cache and wheeldirectory' with result: Success
12-Mar-2024 09:32:13
Substituting variable: ${bamboo.planRepository.branchName} with release/6.6.1
12-Mar-2024 09:32:13 Starting task 'Clone casa6, shell and casa-build-utils' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script'
12-Mar-2024 09:32:13
Beginning to execute external process for build 'CASA - CMake Release Build Casalith 6.6+ - release-6.6.1 - Build and Package Many Linux 2.28 #13 (CASA-CRBC661-BPML228-13)'
... running command line:
/export/home/cbt-el7-8/bamboohome/temp/CASA-CRBC661-BPML228-13-ScriptBuildTask-7066344081405784647.sh
... in: /export/home/cbt-el7-8/bamboohome/xml-data/build-dir/CASA-CRBC661-BPML228
bamboo_planRepository_1_branch=release/6.6.1
bamboo_planRepository_2_branch=master
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12-Mar-2024 09:32:13 branch: release/6.6.1
12-Mar-2024 09:32:13 Cloning into 'casa-build-utils'...
12-Mar-2024 09:32:14 Branch release/6.6.1 set up to track remote branch release/6.6.1 from origin.
12-Mar-2024 09:32:14 Switched to a new branch 'release/6.6.1'
12-Mar-2024 09:32:14 /export/home/cbt-el7-8/bamboohome/xml-data/build-dir/CASA-CRBC661-BPML228/source
12-Mar-2024 09:32:14 Cloning into 'casa6'...
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12-Mar-2024 09:32:38 Checking out files:  88% (8116/9222)   
12-Mar-2024 09:32:38 Checking out files:  89% (8208/9222)   
12-Mar-2024 09:32:38 Checking out files:  90% (8300/9222)   
12-Mar-2024 09:32:38 Checking out files:  91% (8393/9222)   
12-Mar-2024 09:32:38 Checking out files:  92% (8485/9222)   
12-Mar-2024 09:32:39 Checking out files:  92% (8552/9222)   
12-Mar-2024 09:32:39 Checking out files:  93% (8577/9222)   
12-Mar-2024 09:32:39 Checking out files:  94% (8669/9222)   
12-Mar-2024 09:32:39 Checking out files:  95% (8761/9222)   
12-Mar-2024 09:32:39 Checking out files:  96% (8854/9222)   
12-Mar-2024 09:32:39 Checking out files:  97% (8946/9222)   
12-Mar-2024 09:32:39 Checking out files:  98% (9038/9222)   
12-Mar-2024 09:32:39 Checking out files:  99% (9130/9222)   
12-Mar-2024 09:32:39 Checking out files: 100% (9222/9222)   
12-Mar-2024 09:32:39 Checking out files: 100% (9222/9222), done.
12-Mar-2024 09:32:39 Submodule 'casatools/casacore' (https://github.com/casacore/casacore.git) registered for path 'casatools/casacore'
12-Mar-2024 09:32:39 Submodule 'casatools/grpc-source' (https://github.com/grpc/grpc) registered for path 'casatools/grpc-source'
12-Mar-2024 09:32:40 Cloning into 'casatools/casacore'...
12-Mar-2024 09:33:06 Submodule path 'casatools/casacore': checked out 'f1c629840ed35b96f00e67ea1dbaa6566756e3ba'
12-Mar-2024 09:33:06 Cloning into 'casatools/grpc-source'...
12-Mar-2024 09:34:06 Submodule path 'casatools/grpc-source': checked out 'cca868ac8f3641df4003a82b7fc54c921e14f765'
12-Mar-2024 09:34:06 Submodule 'third_party/abseil-cpp' (https://github.com/abseil/abseil-cpp) registered for path 'third_party/abseil-cpp'
12-Mar-2024 09:34:06 Submodule 'third_party/benchmark' (https://github.com/google/benchmark) registered for path 'third_party/benchmark'
12-Mar-2024 09:34:06 Submodule 'third_party/bloaty' (https://github.com/google/bloaty.git) registered for path 'third_party/bloaty'
12-Mar-2024 09:34:06 Submodule 'third_party/boringssl' (https://github.com/google/boringssl.git) registered for path 'third_party/boringssl'
12-Mar-2024 09:34:06 Submodule 'third_party/boringssl-with-bazel' (https://github.com/google/boringssl.git) registered for path 'third_party/boringssl-with-bazel'
12-Mar-2024 09:34:07 Submodule 'third_party/cares/cares' (https://github.com/c-ares/c-ares.git) registered for path 'third_party/cares/cares'
12-Mar-2024 09:34:07 Submodule 'third_party/gflags' (https://github.com/gflags/gflags.git) registered for path 'third_party/gflags'
12-Mar-2024 09:34:07 Submodule 'third_party/googletest' (https://github.com/google/googletest.git) registered for path 'third_party/googletest'
12-Mar-2024 09:34:07 Submodule 'third_party/protobuf' (https://github.com/google/protobuf.git) registered for path 'third_party/protobuf'
12-Mar-2024 09:34:07 Submodule 'third_party/zlib' (https://github.com/madler/zlib) registered for path 'third_party/zlib'
12-Mar-2024 09:34:07 Cloning into 'third_party/abseil-cpp'...
12-Mar-2024 09:34:10 Submodule path 'casatools/grpc-source/third_party/abseil-cpp': checked out 'cc4bed2d74f7c8717e31f9579214ab52a9c9c610'
12-Mar-2024 09:34:11 Cloning into 'third_party/benchmark'...
12-Mar-2024 09:34:12 Submodule path 'casatools/grpc-source/third_party/benchmark': checked out '5b7683f49e1e9223cf9927b24f6fd3d6bd82e3f8'
12-Mar-2024 09:34:12 Cloning into 'third_party/bloaty'...
12-Mar-2024 09:34:14 Submodule path 'casatools/grpc-source/third_party/bloaty': checked out '73594cde8c9a52a102c4341c244c833aa61b9c06'
12-Mar-2024 09:34:14 Submodule 'third_party/googletest' (https://github.com/google/googletest.git) registered for path 'third_party/googletest'
12-Mar-2024 09:34:14 Submodule 'third_party/libFuzzer' (https://chromium.googlesource.com/chromium/llvm-project/llvm/lib/Fuzzer) registered for path 'third_party/libFuzzer'
12-Mar-2024 09:34:14 Submodule 'third_party/re2' (https://github.com/google/re2) registered for path 'third_party/re2'
12-Mar-2024 09:34:14 Cloning into 'third_party/googletest'...
12-Mar-2024 09:34:17 Submodule path 'casatools/grpc-source/third_party/bloaty/third_party/googletest': checked out 'a2b8a8e07628e5fd60644b6dd99c1b5e7d7f1f47'
12-Mar-2024 09:34:17 Cloning into 'third_party/libFuzzer'...
12-Mar-2024 09:34:18 Submodule path 'casatools/grpc-source/third_party/bloaty/third_party/libFuzzer': checked out '1b543d6e5073b56be214394890c9193979a3d7e1'
12-Mar-2024 09:34:18 Cloning into 'third_party/re2'...
12-Mar-2024 09:34:19 Submodule path 'casatools/grpc-source/third_party/bloaty/third_party/re2': checked out 'c964d9b07816f9b52ca692e23b8b3dba33beec54'
12-Mar-2024 09:34:20 Cloning into 'third_party/boringssl'...
12-Mar-2024 09:35:03 Submodule path 'casatools/grpc-source/third_party/boringssl': checked out 'be2ee342d3781ddb954f91f8a7e660c6f59e87e5'
12-Mar-2024 09:35:04 Cloning into 'third_party/boringssl-with-bazel'...
12-Mar-2024 09:35:47 Submodule path 'casatools/grpc-source/third_party/boringssl-with-bazel': checked out '886e7d75368e3f4fab3f4d0d3584e4abfc557755'
12-Mar-2024 09:35:48 Cloning into 'third_party/cares/cares'...
12-Mar-2024 09:35:49 Submodule path 'casatools/grpc-source/third_party/cares/cares': checked out '3be1924221e1326df520f8498d704a5c4c8d0cce'
12-Mar-2024 09:35:50 Cloning into 'third_party/gflags'...
12-Mar-2024 09:35:51 Submodule path 'casatools/grpc-source/third_party/gflags': checked out '30dbc81fb5ffdc98ea9b14b1918bfe4e8779b26e'
12-Mar-2024 09:35:51 Submodule 'doc' (https://github.com/gflags/gflags.git) registered for path 'doc'
12-Mar-2024 09:35:51 Cloning into 'doc'...
12-Mar-2024 09:35:52 Submodule path 'casatools/grpc-source/third_party/gflags/doc': checked out '971dd2a4fadac9cdab174c523c22df79efd63aa5'
12-Mar-2024 09:35:52 Cloning into 'third_party/googletest'...
12-Mar-2024 09:35:55 Submodule path 'casatools/grpc-source/third_party/googletest': checked out 'ec44c6c1675c25b9827aacd08c02433cccde7780'
12-Mar-2024 09:35:55 Cloning into 'third_party/protobuf'...
12-Mar-2024 09:36:14 Submodule path 'casatools/grpc-source/third_party/protobuf': checked out '2761122b810fe8861004ae785cc3ab39f384d342'
12-Mar-2024 09:36:14 Submodule 'third_party/benchmark' (https://github.com/google/benchmark.git) registered for path 'third_party/benchmark'
12-Mar-2024 09:36:15 Cloning into 'third_party/benchmark'...
12-Mar-2024 09:36:16 Submodule path 'casatools/grpc-source/third_party/protobuf/third_party/benchmark': checked out '360e66c1c4777c99402cf8cd535aa510fee16573'
12-Mar-2024 09:36:16 Cloning into 'third_party/zlib'...
12-Mar-2024 09:36:17 Submodule path 'casatools/grpc-source/third_party/zlib': checked out 'cacf7f1d4e3d44d871b605da3b647f07d718623f'
12-Mar-2024 09:36:19 Switched to a new branch 'release/6.6.1'
12-Mar-2024 09:36:19 M        casatools/casacore
12-Mar-2024 09:36:19 Branch release/6.6.1 set up to track remote branch release/6.6.1 from origin.
12-Mar-2024 09:36:19 Synchronizing submodule url for 'casatools/casacore'
12-Mar-2024 09:36:19 Synchronizing submodule url for 'casatools/grpc-source'
12-Mar-2024 09:36:20 Submodule path 'casatools/casacore': checked out 'a43b76dea5d6fdef9feabb68748cd2b62043cfdc'
12-Mar-2024 09:36:26 /export/home/cbt-el7-8/bamboohome/xml-data/build-dir/CASA-CRBC661-BPML228/source
12-Mar-2024 09:36:26 Cloning into 'casashell'...
12-Mar-2024 09:36:29 Branch release/6.6.1 set up to track remote branch release/6.6.1 from origin.
12-Mar-2024 09:36:29 Switched to a new branch 'release/6.6.1'
12-Mar-2024 09:36:29 /export/home/cbt-el7-8/bamboohome/xml-data/build-dir/CASA-CRBC661-BPML228/source
12-Mar-2024 09:36:29 Finished task 'Clone casa6, shell and casa-build-utils' with result: Success
12-Mar-2024 09:36:29
Substituting variable: ${bamboo.working.directory} with /export/home/cbt-el7-8/bamboohome/xml-data/build-dir/CASA-CRBC661-BPML228
12-Mar-2024 09:36:29 Starting task 'Pull manylinux228 casalith image' of type 'com.atlassian.bamboo.plugins.bamboo-docker-plugin:task.docker.cli'
12-Mar-2024 09:36:29
Beginning to execute external process for build 'CASA - CMake Release Build Casalith 6.6+ - release-6.6.1 - Build and Package Many Linux 2.28 #13 (CASA-CRBC661-BPML228-13)'
... running command line:
/bin/docker pull casa-docker.nrao.edu:5000/casabuild-manylinux2_28-cmake-mpi5.0.1-rpm:2
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12-Mar-2024 09:36:30 2: Pulling from casabuild-manylinux2_28-cmake-mpi5.0.1-rpm
12-Mar-2024 09:36:30 Digest: sha256:54ce83ba75d27636956f802e8227ac870bad11407874993ed903d832b92d9a40
12-Mar-2024 09:36:30 Status: Image is up to date for casa-docker.nrao.edu:5000/casabuild-manylinux2_28-cmake-mpi5.0.1-rpm:2
12-Mar-2024 09:36:30 casa-docker.nrao.edu:5000/casabuild-manylinux2_28-cmake-mpi5.0.1-rpm:2
12-Mar-2024 09:36:30 Finished task 'Pull manylinux228 casalith image' with result: Success
12-Mar-2024 09:36:30 Starting task 'Stop and remove casalith-container' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script'
12-Mar-2024 09:36:30
Beginning to execute external process for build 'CASA - CMake Release Build Casalith 6.6+ - release-6.6.1 - Build and Package Many Linux 2.28 #13 (CASA-CRBC661-BPML228-13)'
... running command line:
/export/home/cbt-el7-8/bamboohome/temp/CASA-CRBC661-BPML228-13-ScriptBuildTask-5488300024937917649.sh
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bamboo_build_commandline_com_atlassian_bamboo_plugins_bamboo_docker_plugin_task_docker_cli_17=/bin/docker pull casa-docker.nrao.edu:5000/casabuild-manylinux2_28-cmake-mpi5.0.1-rpm:2
bamboo_planRepository_2_name=OPEN-CASA-PKG
bamboo_buildTimeStamp=2024-03-12T09:32:12.296-04:00
bamboo_repository_previous_revision_number=eb84f4edbb841373281d852085fbe19adb326c91
bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_3=/export/home/cbt-el7-8/bamboohome/temp/CASA-CRBC661-BPML228-13-ScriptBuildTask-7066344081405784647.sh
bamboo_repository_git_branch=release/6.6.1
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bamboo_planRepository_1_revision=0f5f5457976fc70d8bb77e9995e1e54c4b6ad40d
bamboo_capability_system_hg_executable=/bin/hg
bamboo_repository_name=OPEN-CASA-PKG
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bamboo_buildFailed=false
bamboo_capability_system_docker_executable=/bin/docker
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bamboo_capability_operating_system=EL7
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12-Mar-2024 09:36:30 Error response from daemon: No such container: casalith_container
12-Mar-2024 09:36:30 Error response from daemon: No such container: casalith_container
12-Mar-2024 09:36:30 Removed casalith_container
12-Mar-2024 09:36:30 Finished task 'Stop and remove casalith-container' with result: Success
12-Mar-2024 09:36:30
Substituting variable: ${bamboo.working.directory} with /export/home/cbt-el7-8/bamboohome/xml-data/build-dir/CASA-CRBC661-BPML228
12-Mar-2024 09:36:30
Substituting variable: ${bamboo.working.directory} with /export/home/cbt-el7-8/bamboohome/xml-data/build-dir/CASA-CRBC661-BPML228
12-Mar-2024 09:36:30 Starting task 'Start Casalith container' of type 'com.atlassian.bamboo.plugins.bamboo-docker-plugin:task.docker.cli'
12-Mar-2024 09:36:30 Running image name (casa-docker.nrao.edu:5000/casabuild-manylinux2_28-cmake-mpi5.0.1-rpm:2)
12-Mar-2024 09:36:30
Beginning to execute external process for build 'CASA - CMake Release Build Casalith 6.6+ - release-6.6.1 - Build and Package Many Linux 2.28 #13 (CASA-CRBC661-BPML228-13)'
... running command line:
/bin/docker run --volume /export/home/cbt-el7-8/bamboohome/xml-data/build-dir/CASA-CRBC661-BPML228/source:/source --volume /export/home/cbt-el7-8/bamboohome/xml-data/build-dir/CASA-CRBC661-BPML228/../ccache_ml2014:/ccache --detach -v /opt/casa/data/master:/opt/casa/data:ro --name casalith_container casa-docker.nrao.edu:5000/casabuild-manylinux2_28-cmake-mpi5.0.1-rpm:2 tail -f /dev/null
... in: /export/home/cbt-el7-8/bamboohome/xml-data/build-dir/CASA-CRBC661-BPML228
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bamboo_planRepository_1_type=bbserver
bamboo_planRepository_branchName=release/6.6.1
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bamboo_planRepository_1_username=
bamboo_planRepository_type=bbserver
bamboo_ManualBuildTriggerReason_userName=vsuorant
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bamboo_ManualBuildTriggerReason_stageName=Tag
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bamboo_build_commandline_com_atlassian_bamboo_plugins_bamboo_docker_plugin_task_docker_cli_17=/bin/docker pull casa-docker.nrao.edu:5000/casabuild-manylinux2_28-cmake-mpi5.0.1-rpm:2
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bamboo_repository_git_branch=release/6.6.1
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bamboo_planRepository_2_type=bbserver
bamboo_capability_casa6docker=true
bamboo_plan_storageTag=plan-92078082
bamboo_planRepository_2_repositoryUrl=ssh://git@open-bitbucket.nrao.edu:7999/casa/casa-pkg.git
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bamboo_RerunBuildTriggerReason_noOfRetries=2
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bamboo_capability_system_jdk_JDK_1_8=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.161-0.b14.el7_4.x86_64
bamboo_repository_86278745_git_username=
12-Mar-2024 09:36:40 ff3bdae2e0f642065cb9ef2c0b6a1b849c8a1202e3c29b06f45ff31d8d9f5e72
12-Mar-2024 09:36:42 Finished task 'Start Casalith container' with result: Success
12-Mar-2024 09:36:42 Starting task 'Remove Python variants' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script'
12-Mar-2024 09:36:42
Beginning to execute external process for build 'CASA - CMake Release Build Casalith 6.6+ - release-6.6.1 - Build and Package Many Linux 2.28 #13 (CASA-CRBC661-BPML228-13)'
... running command line:
/export/home/cbt-el7-8/bamboohome/temp/CASA-CRBC661-BPML228-13-ScriptBuildTask-4579778443196886266.sh
... in: /export/home/cbt-el7-8/bamboohome/xml-data/build-dir/CASA-CRBC661-BPML228
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bamboo_repository_92209154_revision_number=0f5f5457976fc70d8bb77e9995e1e54c4b6ad40d
bamboo_buildKey=CASA-CRBC661-BPML228
bamboo_planRepository_2_branchDisplayName=master
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bamboo_capability_system_jdk_JDK_1_8_0_392=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.392.b08-2.el7_9.x86_64
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bamboo_repository_previous_revision_number=eb84f4edbb841373281d852085fbe19adb326c91
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bamboo_repository_git_branch=release/6.6.1
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bamboo_capability_operating_system=EL7
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bamboo_planRepository_2_type=bbserver
bamboo_capability_casa6docker=true
bamboo_plan_storageTag=plan-92078082
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bamboo_repository_86278745_git_username=
12-Mar-2024 09:36:46 Dependencies resolved.
12-Mar-2024 09:36:46 =======================================================================================
12-Mar-2024 09:36:46 Package              Arch    Version                                 Repository   Size
12-Mar-2024 09:36:46 =======================================================================================
12-Mar-2024 09:36:46 Removing:
12-Mar-2024 09:36:46 python36             x86_64  3.6.8-38.module_el8.5.0+2569+5c5719bc   @appstream   13 k
12-Mar-2024 09:36:46 Removing dependent packages:
12-Mar-2024 09:36:46 python3-wheel        noarch  1:0.31.1-3.module_el8.5.0+2569+5c5719bc @appstream  179 k
12-Mar-2024 09:36:46 Removing unused dependencies:
12-Mar-2024 09:36:46 python3-pip          noarch  9.0.3-23.el8                            @appstream  2.8 k
12-Mar-2024 09:36:46 python3-setuptools   noarch  39.2.0-7.el8                            @baseos     450 k
12-Mar-2024 09:36:46
12-Mar-2024 09:36:46 Transaction Summary
12-Mar-2024 09:36:46 =======================================================================================
12-Mar-2024 09:36:46 Remove  4 Packages
12-Mar-2024 09:36:46
12-Mar-2024 09:36:46 Freed space: 645 k
12-Mar-2024 09:36:46 Running transaction check
12-Mar-2024 09:36:46 Transaction check succeeded.
12-Mar-2024 09:36:46 Running transaction test
12-Mar-2024 09:36:46 Transaction test succeeded.
12-Mar-2024 09:36:46 Running transaction
12-Mar-2024 09:36:49   Preparing        :                                                        1/1
12-Mar-2024 09:36:49   Erasing          : python3-wheel-1:0.31.1-3.module_el8.5.0+2569+5c5719b   1/4
12-Mar-2024 09:36:49   Running scriptlet: python3-wheel-1:0.31.1-3.module_el8.5.0+2569+5c5719b   1/4
12-Mar-2024 09:36:49   Erasing          : python36-3.6.8-38.module_el8.5.0+2569+5c5719bc.x86_6   2/4
12-Mar-2024 09:36:50   Running scriptlet: python36-3.6.8-38.module_el8.5.0+2569+5c5719bc.x86_6   2/4
12-Mar-2024 09:36:50   Erasing          : python3-pip-9.0.3-23.el8.noarch                        3/4
12-Mar-2024 09:36:50   Erasing          : python3-setuptools-39.2.0-7.el8.noarch                 4/4
12-Mar-2024 09:36:50   Running scriptlet: python3-setuptools-39.2.0-7.el8.noarch                 4/4
12-Mar-2024 09:36:50   Verifying        : python3-pip-9.0.3-23.el8.noarch                        1/4
12-Mar-2024 09:36:50   Verifying        : python3-setuptools-39.2.0-7.el8.noarch                 2/4
12-Mar-2024 09:36:50   Verifying        : python3-wheel-1:0.31.1-3.module_el8.5.0+2569+5c5719b   3/4
12-Mar-2024 09:36:51   Verifying        : python36-3.6.8-38.module_el8.5.0+2569+5c5719bc.x86_6   4/4
12-Mar-2024 09:36:51
12-Mar-2024 09:36:51 Removed:
12-Mar-2024 09:36:51   python3-pip-9.0.3-23.el8.noarch                                               
12-Mar-2024 09:36:51   python3-setuptools-39.2.0-7.el8.noarch                                       
12-Mar-2024 09:36:51   python3-wheel-1:0.31.1-3.module_el8.5.0+2569+5c5719bc.noarch                 
12-Mar-2024 09:36:51   python36-3.6.8-38.module_el8.5.0+2569+5c5719bc.x86_64                         
12-Mar-2024 09:36:51
12-Mar-2024 09:36:51 Complete!
12-Mar-2024 09:36:51 Finished task 'Remove Python variants' with result: Success
12-Mar-2024 09:36:51
Substituting variable: ${bamboo.planRepository.branchName} with release/6.6.1
12-Mar-2024 09:36:51 Starting task 'Create casalith' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script'
12-Mar-2024 09:36:51
Beginning to execute external process for build 'CASA - CMake Release Build Casalith 6.6+ - release-6.6.1 - Build and Package Many Linux 2.28 #13 (CASA-CRBC661-BPML228-13)'
... running command line:
/export/home/cbt-el7-8/bamboohome/temp/CASA-CRBC661-BPML228-13-ScriptBuildTask-8062648075797688330.sh
... in: /export/home/cbt-el7-8/bamboohome/xml-data/build-dir/CASA-CRBC661-BPML228
bamboo_planRepository_1_branch=release/6.6.1
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bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_19=/export/home/cbt-el7-8/bamboohome/temp/CASA-CRBC661-BPML228-13-ScriptBuildTask-5488300024937917649.sh
bamboo_repository_92209154_revision_number=0f5f5457976fc70d8bb77e9995e1e54c4b6ad40d
bamboo_buildKey=CASA-CRBC661-BPML228
bamboo_planRepository_2_branchDisplayName=master
bamboo_shortJobName=Build and Package Many Linux 2.28
bamboo_buildResultsUrl=https://open-bamboo.nrao.edu/browse/CASA-CRBC661-BPML228-13
bamboo_planRepository_repositoryUrl=ssh://git@open-bitbucket.nrao.edu:7999/casa/casa6.git
bamboo_atlutil_user=casaadm
bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_21=/export/home/cbt-el7-8/bamboohome/temp/CASA-CRBC661-BPML228-13-ScriptBuildTask-4579778443196886266.sh
bamboo_repository_92209154_previous_revision_number=eb84f4edbb841373281d852085fbe19adb326c91
bamboo_agentId=21790727
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bamboo_dockerContainerNames=casalith_container
bamboo_signature=08EA1D734E321F460FE5FE050129891F2F79A822
bamboo_planRepository_revision=0f5f5457976fc70d8bb77e9995e1e54c4b6ad40d
bamboo_casaadm_password=********
bamboo_notarytool_keychainprofile=casa_notarization
bamboo_planRepository_previousRevision=eb84f4edbb841373281d852085fbe19adb326c91
bamboo_repository_branch_name=release/6.6.1
bamboo_repository_86278745_revision_number=70c7e96a1cc7826da261f7bb271e831eaee7560f
bamboo_notarytool_keychain_password=********
bamboo_repository_92209154_name=Casa6
bamboo_capability_isCIMachine=true
bamboo_planRepository_branch=release/6.6.1
bamboo_repository_92209154_git_branch=release/6.6.1
bamboo_repository_86278745_previous_revision_number=70c7e96a1cc7826da261f7bb271e831eaee7560f
bamboo_capability_system_jdk_JDK_1_8_0_392=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.392.b08-2.el7_9.x86_64
bamboo_planRepository_1_type=bbserver
bamboo_planRepository_branchName=release/6.6.1
bamboo_notarytool_keychain_path=/Users/casaci/notary.keychain
bamboo_capability_system_jdk_JDK=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.161-0.b14.el7_4.x86_64
bamboo_atlutil_password=********
bamboo_planRepository_1_username=
bamboo_planRepository_type=bbserver
bamboo_ManualBuildTriggerReason_userName=vsuorant
bamboo_git_cache_directory=/export/home/cbt-el7-8/bamboohome/xml-data/build-dir/_git-repositories-cache
bamboo_planRepository_2_branchName=master
bamboo_repository_86278745_branch_name=master
bamboo_capability_system_builder_node_Node_js=/usr/bin/node
bamboo_repository_92209154_branch_name=release/6.6.1
bamboo_capability_system_builder_ant_Ant=/usr
bamboo_tmp_directory=/export/home/cbt-el7-8/bamboohome/temp
bamboo_planKey=CASA-CRBC661
bamboo_planRepository_username=
bamboo_capability_system_jdk_JDK_1_8_0_161=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.161-0.b14.el7_4.x86_64
bamboo_planRepository_1_branchName=release/6.6.1
bamboo_capability_buildmachinetype=casa6pullrequest
bamboo_resultsUrl=https://open-bamboo.nrao.edu/browse/CASA-CRBC661-BPML228-13
bamboo_build_working_directory=/export/home/cbt-el7-8/bamboohome/xml-data/build-dir/CASA-CRBC661-BPML228
bamboo_planRepository_1_name=Casa6
bamboo_repository_92209154_git_username=
bamboo_shortPlanName=CMake Release Build Casalith 6.6+
bamboo_capability_hostname=cbt-el7-8.cv.nrao.edu
bamboo_planRepository_2_username=
bamboo_planRepository_name=Casa6
bamboo_buildNumber=13
bamboo_username=vsuorant@nrao.edu
bamboo_repository_92209154_git_repositoryUrl=ssh://git@open-bitbucket.nrao.edu:7999/casa/casa6.git
bamboo_ManualBuildTriggerReason_stageName=Tag
bamboo_planName=CASA - CMake Release Build Casalith 6.6+ - release-6.6.1
bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_9=/export/home/cbt-el7-8/bamboohome/temp/CASA-CRBC661-BPML228-13-ScriptBuildTask-7615832934894671067.sh
bamboo_shortPlanKey=CRBC661
bamboo_al_password=********
bamboo_shortJobKey=BPML228
bamboo_build_commandline_com_atlassian_bamboo_plugins_bamboo_docker_plugin_task_docker_cli_17=/bin/docker pull casa-docker.nrao.edu:5000/casabuild-manylinux2_28-cmake-mpi5.0.1-rpm:2
bamboo_planRepository_2_name=OPEN-CASA-PKG
bamboo_buildTimeStamp=2024-03-12T09:32:12.296-04:00
bamboo_repository_previous_revision_number=eb84f4edbb841373281d852085fbe19adb326c91
bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_3=/export/home/cbt-el7-8/bamboohome/temp/CASA-CRBC661-BPML228-13-ScriptBuildTask-7066344081405784647.sh
bamboo_repository_git_branch=release/6.6.1
bamboo_buildResultKey=CASA-CRBC661-BPML228-13
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bamboo_planRepository_1_revision=0f5f5457976fc70d8bb77e9995e1e54c4b6ad40d
bamboo_capability_system_hg_executable=/bin/hg
bamboo_repository_name=OPEN-CASA-PKG
bamboo_planRepository_2_previousRevision=70c7e96a1cc7826da261f7bb271e831eaee7560f
bamboo_buildFailed=false
bamboo_capability_system_docker_executable=/bin/docker
bamboo_build_commandline_com_atlassian_bamboo_plugins_bamboo_docker_plugin_task_docker_cli_13=/bin/docker run --volume /export/home/cbt-el7-8/bamboohome/xml-data/build-dir/CASA-CRBC661-BPML228/source:/source --volume /export/home/cbt-el7-8/bamboohome/xml-data/build-dir/CASA-CRBC661-BPML228/../ccache_ml2014:/ccache --detach -v /opt/casa/data/master:/opt/casa/data:ro --name casalith_container casa-docker.nrao.edu:5000/casabuild-manylinux2_28-cmake-mpi5.0.1-rpm:2 tail -f /dev/null
bamboo_repository_86278745_git_repositoryUrl=ssh://git@open-bitbucket.nrao.edu:7999/casa/casa-pkg.git
bamboo_agentWorkingDirectory=/export/home/cbt-el7-8/bamboohome/xml-data/build-dir
bamboo_planRepository_2_revision=70c7e96a1cc7826da261f7bb271e831eaee7560f
bamboo_capability_system_git_executable=/bin/git
bamboo_repository_git_username=
bamboo_planRepository_1_previousRevision=eb84f4edbb841373281d852085fbe19adb326c91
bamboo_capability_operating_system=EL7
bamboo_planRepository_branchDisplayName=release/6.6.1
bamboo_shortPlanBranchName=release-6.6.1
bamboo_capability_project=CASA
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bamboo_capability_casa6docker=true
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bamboo_planRepository_2_repositoryUrl=ssh://git@open-bitbucket.nrao.edu:7999/casa/casa-pkg.git
bamboo_repository_86278745_git_branch=master
bamboo_repository_git_repositoryUrl=ssh://git@open-bitbucket.nrao.edu:7999/casa/casa6.git
bamboo_working_directory=/export/home/cbt-el7-8/bamboohome/xml-data/build-dir/CASA-CRBC661-BPML228
bamboo_RerunBuildTriggerReason_noOfRetries=2
bamboo_planRepository_1_repositoryUrl=ssh://git@open-bitbucket.nrao.edu:7999/casa/casa6.git
bamboo_capability_system_jdk_JDK_1_8=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.161-0.b14.el7_4.x86_64
bamboo_repository_86278745_git_username=
12-Mar-2024 09:36:51 branch: release/6.6.1
12-Mar-2024 09:36:51   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
12-Mar-2024 09:36:51                                  Dload  Upload   Total   Spent    Left  Speed
12-Mar-2024 09:36:51
12-Mar-2024 09:36:51   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
12-Mar-2024 09:36:51 100 6002k  100 6002k    0     0  25.2M      0 --:--:-- --:--:-- --:--:-- 25.9M
12-Mar-2024 09:36:52 [16270] Failed to execute script 'atlutil' due to unhandled exception!
12-Mar-2024 09:36:52 Traceback (most recent call last):
12-Mar-2024 09:36:52   File "atlutil.py", line 200, in <module>
12-Mar-2024 09:36:52   File "atlutil.py", line 165, in has_fix_version
12-Mar-2024 09:36:52   File "json/__init__.py", line 354, in loads
12-Mar-2024 09:36:52   File "json/decoder.py", line 339, in decode
12-Mar-2024 09:36:52   File "json/decoder.py", line 357, in raw_decode
12-Mar-2024 09:36:52 json.decoder.JSONDecodeError: Expecting value: line 1 column 1 (char 0)
12-Mar-2024 09:36:52 ls: cannot access *.whl: No such file or directory
12-Mar-2024 09:36:52 /export/home/cbt-el7-8/bamboohome/xml-data/build-dir/CASA-CRBC661-BPML228
12-Mar-2024 09:36:52 Already on 'release/6.6.1'
12-Mar-2024 09:36:53 AlmaLinux 8 - BaseOS                             11 kB/s | 3.8 kB     00:00   
12-Mar-2024 09:36:54 AlmaLinux 8 - BaseOS                            8.3 MB/s | 6.3 MB     00:00   
12-Mar-2024 09:36:56 AlmaLinux 8 - AppStream                          47 kB/s | 4.1 kB     00:00   
12-Mar-2024 09:36:57 AlmaLinux 8 - AppStream                          11 MB/s |  12 MB     00:01   
12-Mar-2024 09:37:00 AlmaLinux 8 - Extras                             41 kB/s | 3.8 kB     00:00   
12-Mar-2024 09:37:00 AlmaLinux 8 - Extras                             84 kB/s |  21 kB     00:00   
12-Mar-2024 09:37:01 AlmaLinux 8 - PowerTools                         48 kB/s | 4.1 kB     00:00   
12-Mar-2024 09:37:01 AlmaLinux 8 - PowerTools                        5.9 MB/s | 3.1 MB     00:00   
12-Mar-2024 09:37:03 Extra Packages for Enterprise Linux 8 - x86_64  120 kB/s |  27 kB     00:00   
12-Mar-2024 09:37:05 Extra Packages for Enterprise Linux 8 - x86_64  8.0 MB/s |  16 MB     00:02   
12-Mar-2024 09:37:11 Last metadata expiration check: 0:00:01 ago on Tue 12 Mar 2024 01:37:04 PM UTC.
12-Mar-2024 09:37:13 Package chrpath-0.16-7.el8.x86_64 is already installed.
12-Mar-2024 09:37:13 Package perl-File-Copy-Recursive-0.40-3.el8.noarch is already installed.
12-Mar-2024 09:37:13 Dependencies resolved.
12-Mar-2024 09:37:13 Nothing to do.
12-Mar-2024 09:37:13 Complete!
12-Mar-2024 09:37:22 qtoption:
12-Mar-2024 09:37:22 Executing: docker exec casalith_container /bin/bash -c "useradd -u 9285 casaci"
12-Mar-2024 09:37:22 Executing: docker exec -u casaci casalith_container /bin/bash -c "python3.8 -m pip install --upgrade --user numpy"
12-Mar-2024 09:37:22 Collecting numpy
12-Mar-2024 09:37:22 Downloading https://files.pythonhosted.org/packages/98/5d/5738903efe0ecb73e51eb44feafba32bdba2081263d40c5043568ff60faf/numpy-1.24.4-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (17.3MB)
12-Mar-2024 09:37:22 Installing collected packages: numpy
12-Mar-2024 09:37:22 WARNING: The scripts f2py, f2py3 and f2py3.8 are installed in '/home/casaci/.local/bin' which is not on PATH.
12-Mar-2024 09:37:22 Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
12-Mar-2024 09:37:22 Successfully installed numpy-1.24.4
12-Mar-2024 09:37:22 Executing: docker exec -u casaci casalith_container /bin/bash -c "mkdir ~/.casa && mkdir -p ~/.config/pip"
12-Mar-2024 09:37:22 Executing: docker cp /export/home/cbt-el7-8/bamboohome/xml-data/build-dir/CASA-CRBC661-BPML228/source/casa-build-utils/cmakebuild/scripts/config/config.py casalith_container:/home/casaci/.casa/config.py
12-Mar-2024 09:37:22 Executing: docker cp /export/home/cbt-el7-8/bamboohome/xml-data/build-dir/CASA-CRBC661-BPML228/source/casa-build-utils/cmakebuild/scripts/config/pip.conf.cmake.manylinux.py38 casalith_container:/home/casaci/.config/pip/pip.conf
12-Mar-2024 09:37:22 Executing: docker cp /export/home/cbt-el7-8/bamboohome/xml-data/build-dir/CASA-CRBC661-BPML228/source/casa-build-utils/cmakebuild/scripts/build_casalith_cmake.sh casalith_container:/home/casaci/build_casalith_cmake
12-Mar-2024 09:37:22 Executing: docker exec -u casaci casalith_container /bin/bash -c "cd /home/casaci && ./build_casalith_cmake -r /source -p 3.8 -m ml228 -b release/6.6.1"
12-Mar-2024 09:37:22 Set cache size limit to 50.0 GB
12-Mar-2024 09:37:22 <casa_cmake> Setting MPI_HOME to /opt/openmpi-casa/5.0.1/
12-Mar-2024 09:37:22 <casa_cmake> pythonversion 3.8
12-Mar-2024 09:37:22 <casa_cmake> branch release/6.6.1
12-Mar-2024 09:37:22 <casa_cmake> Setting up ccache
12-Mar-2024 09:37:22 Set cache size limit to 50.0 GB
12-Mar-2024 09:37:22 <casa_cmake> buildtarget not set. Defaulting to Casalith build.
12-Mar-2024 09:37:22 build_casalith_cmake.sh qtversion:
12-Mar-2024 09:37:22 build_casalith_cmake.sh qtoption: -q
12-Mar-2024 09:37:22 Creating /source/casainstall
12-Mar-2024 09:37:22 Creating /source/work
12-Mar-2024 09:37:22 Downloading libsakura
12-Mar-2024 09:37:22 % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
12-Mar-2024 09:37:22 Dload  Upload   Total   Spent    Left  Speed
12-Mar-2024 09:37:22 0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
12-Mar-2024 09:37:22   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/.github/
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/.github/workflows/
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/.github/workflows/cmake.yml
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/Makefile
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/bench/
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/bench/A/
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/bench/A/Makefile
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/bench/A/fetchAllPointing-sqlite.cc
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/bench/A/fetchAllPointing.cc
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/bench/A/insertToPointing-sqlite.cc
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/bench/A/insertToPointing.cc
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/bench/B/
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/bench/B/Makefile
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/bench/B/get-all-casa.cc
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/bench/B/get-all-sqlite.cc
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/bench/C/
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/bench/C/Makefile
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/bench/C/addcol-casa.cc
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/bench/D/
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/bench/D/Makefile
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/bench/D/select-get-casa.cc
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/bench/D/select-get-sqlite.cc
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/bench/E/
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/bench/E/Makefile
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/bench/E/select-update-casa.cc
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/bench/avg/
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/bench/avg/Makefile
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/bench/avg/average-ext.cc
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/bench/avg/average.cc
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/bench/e2eReduce/
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/bench/e2eReduce/.cproject
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/bench/e2eReduce/.project
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/bench/e2eReduce/.settings/
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/bench/e2eReduce/.settings/language.settings.xml
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/bench/e2eReduce/.settings/org.eclipse.cdt.codan.core.prefs
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/bench/e2eReduce/.settings/org.eclipse.cdt.core.prefs
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/bench/e2eReduce/CMakeLists.txt
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/bench/e2eReduce/cmake-modules/
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/bench/e2eReduce/cmake-modules/FindCasaCore.cmake
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12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/bench/e2eReduce/src/main.cc
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/bench/e2eReduce/src/option_parser.h
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/bench/e2eReduce/src/utils.h
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/c++/
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/c++/Doxyfile
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/c++/Makefile
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/c++/include/
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/c++/include/SQLite.h
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12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/c++/lib/SQLite.cc
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12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/.settings/org.eclipse.cdt.codan.core.prefs
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/CMakeLists.txt
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/COPYING
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/COPYING.LESSER
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/INSTALL.txt
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/NOTICE
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/bin/
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/bin/fix-license.sh
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/bin/multi-arch-build.sh
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/bin/osx_python_to_casa.sh
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/bin/package_release.sh
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/cmake-modules/
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/cmake-modules/FindEigen3.cmake
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/cmake-modules/FindFFTW3.cmake
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/cmake-modules/FindLog4Cxx.cmake
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/cmake-modules/SetArchFlags.cmake
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/doc/
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/doc/images/
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/doc/images/GetCoefficientsForLeastSquareFitting.png
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12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/doc/mainpage.dox
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/doc/misc/
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/doc/misc/SakuraStatistics-algorithm.xlsx
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/libsakura.pc.in
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/python-binding/
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/python-binding/CMakeLists.txt
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12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/src/
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/src/CMakeLists.txt
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12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/src/bool_filter_collection.cc
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/src/concurrent.cc
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/src/convolution.cc
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/src/eigen_binary_visitor_plugin.h
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/src/fft.cc
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/src/gen_util.cc
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/src/gridding.cc
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12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/src/libsakura/concurrent.h
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/src/libsakura/config.h.in
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/src/libsakura/localdef.h
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/src/libsakura/logger.h
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/src/libsakura/memory_manager.h
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/src/libsakura/packed_operation.h
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/src/libsakura/packed_type.h
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/src/libsakura/sakura.h
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/src/mask_edge.cc
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/src/normalization.cc
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/src/numeric_operation.cc
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/src/statistics.cc
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/test/
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/test/CMakeLists.txt
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/test/aligned_memory.h
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/test/asap/
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/test/asap/BisectionLocator.h
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/test/asap/BisectionLocator.tcc
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/test/asap/CubicSplineInterpolator1D.h
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12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/test/bench-lsqfit-casacore.cc
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/test/bench-lsqfit-numpy.py
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/test/bench-lsqfit-sakura.py
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/test/bench-template.cc
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/test/bench_template.py
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12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/test/init.cc
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12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/test/mask_edge.cc
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/test/normalization.cc
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/test/numeric_operation.cc
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/test/statistics.cc
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/test/testutil.cc
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/libsakura/test/testutil.h
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/sql/
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/sql/MS.erm
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/sql/MSM.ddl
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/sql/MST.ddl
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/sql/Makefile
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/sql/fix.sed
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/sql/sep.sh
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/tools/
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/tools/converter/
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/tools/converter/msconverter/
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/tools/converter/msconverter/Makefile
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/tools/converter/msconverter/msconverter.cc
12-Mar-2024 09:37:22 sakura-libsakura-5.1.3/tools/converter/msconverter/test.sql
12-Mar-2024 09:37:22 Configuring libsakura
12-Mar-2024 09:37:22 CMake Deprecation Warning at CMakeLists.txt:24 (cmake_minimum_required):
12-Mar-2024 09:37:22 Compatibility with CMake < 2.8.12 will be removed from a future version of
12-Mar-2024 09:37:22 CMake.
12-Mar-2024 09:37:22
12-Mar-2024 09:37:26 Update the VERSION argument <min> value or use a ...<max> suffix to tell
12-Mar-2024 09:37:26 CMake that the project does not need compatibility with older versions.
12-Mar-2024 09:37:26
12-Mar-2024 09:37:26
12-Mar-2024 09:37:26 -- The C compiler identification is GNU 11.2.1
12-Mar-2024 09:37:26 -- The CXX compiler identification is GNU 11.2.1
12-Mar-2024 09:37:26 -- Detecting C compiler ABI info
12-Mar-2024 09:37:26 -- Detecting C compiler ABI info - done
12-Mar-2024 09:37:26 -- Check for working C compiler: /usr/lib64/ccache/cc - skipped
12-Mar-2024 09:37:26 -- Detecting C compile features
12-Mar-2024 09:37:26 -- Detecting C compile features - done
12-Mar-2024 09:37:26 -- Detecting CXX compiler ABI info
12-Mar-2024 09:37:26 -- Detecting CXX compiler ABI info - done
12-Mar-2024 09:37:26 -- Check for working CXX compiler: /usr/lib64/ccache/c++ - skipped
12-Mar-2024 09:37:26 -- Detecting CXX compile features
12-Mar-2024 09:37:26 -- Detecting CXX compile features - done
12-Mar-2024 09:37:26 -- CMAKE_CXX_FLAGS= -std=c++11
12-Mar-2024 09:37:26 CMake Deprecation Warning at src/CMakeLists.txt:24 (cmake_minimum_required):
12-Mar-2024 09:37:26 Compatibility with CMake < 2.8.12 will be removed from a future version of
12-Mar-2024 09:37:26 CMake.
12-Mar-2024 09:37:26
12-Mar-2024 09:37:26 Update the VERSION argument <min> value or use a ...<max> suffix to tell
12-Mar-2024 09:37:26 CMake that the project does not need compatibility with older versions.
12-Mar-2024 09:37:26
12-Mar-2024 09:37:26
12-Mar-2024 09:37:26 CMake Warning (dev) at src/CMakeLists.txt:26 (project):
12-Mar-2024 09:37:26 Policy CMP0048 is not set: project() command manages VERSION variables.
12-Mar-2024 09:37:26 Run "cmake --help-policy CMP0048" for policy details.  Use the cmake_policy
12-Mar-2024 09:37:26 command to set the policy and suppress this warning.
12-Mar-2024 09:37:26
12-Mar-2024 09:37:26 The following variable(s) would be set to empty:
12-Mar-2024 09:37:26
12-Mar-2024 09:37:26 libsakura_VERSION_MAJOR
12-Mar-2024 09:37:26 libsakura_VERSION_MINOR
12-Mar-2024 09:37:26 This warning is for project developers.  Use -Wno-dev to suppress it.
12-Mar-2024 09:37:26
12-Mar-2024 09:37:26 -- Looking for pthread.h
12-Mar-2024 09:37:26 -- Looking for pthread.h - found
12-Mar-2024 09:37:26 -- Performing Test CMAKE_HAVE_LIBC_PTHREAD
12-Mar-2024 09:37:26 -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
12-Mar-2024 09:37:26 -- Looking for pthread_create in pthreads
12-Mar-2024 09:37:26 -- Looking for pthread_create in pthreads - not found
12-Mar-2024 09:37:26 -- Looking for pthread_create in pthread
12-Mar-2024 09:37:26 -- Looking for pthread_create in pthread - found
12-Mar-2024 09:37:26 -- Found Threads: TRUE
12-Mar-2024 09:37:26 CMake Warning (dev) at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:438 (message):
12-Mar-2024 09:37:26 The package name passed to `find_package_handle_standard_args` (EIGEN3)
12-Mar-2024 09:37:26 does not match the name of the calling package (Eigen3).  This can lead to
12-Mar-2024 09:37:26 problems in calling code that expects `find_package` result variables
12-Mar-2024 09:37:26 (e.g., `_FOUND`) to follow a certain pattern.
12-Mar-2024 09:37:26 Call Stack (most recent call first):
12-Mar-2024 09:37:26 cmake-modules/FindEigen3.cmake:16 (find_package_handle_standard_args)
12-Mar-2024 09:37:26 src/CMakeLists.txt:29 (find_package)
12-Mar-2024 09:37:26 This warning is for project developers.  Use -Wno-dev to suppress it.
12-Mar-2024 09:37:26
12-Mar-2024 09:37:26 -- Found EIGEN3: /usr/include/eigen3 (found version "3.3.4")
12-Mar-2024 09:37:26 CMake Warning (dev) at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:438 (message):
12-Mar-2024 09:37:26 The package name passed to `find_package_handle_standard_args` (LOG4CXX)
12-Mar-2024 09:37:26 does not match the name of the calling package (Log4Cxx).  This can lead to
12-Mar-2024 09:37:26 problems in calling code that expects `find_package` result variables
12-Mar-2024 09:37:26 (e.g., `_FOUND`) to follow a certain pattern.
12-Mar-2024 09:37:26 Call Stack (most recent call first):
12-Mar-2024 09:37:26 cmake-modules/FindLog4Cxx.cmake:5 (FIND_PACKAGE_HANDLE_STANDARD_ARGS)
12-Mar-2024 09:37:26 src/CMakeLists.txt:30 (find_package)
12-Mar-2024 09:37:26 This warning is for project developers.  Use -Wno-dev to suppress it.
12-Mar-2024 09:37:26
12-Mar-2024 09:37:26 -- Could NOT find LOG4CXX (missing: LOG4CXX_LIBRARY LOG4CXX_INCLUDE_DIR)
12-Mar-2024 09:37:26 -- FFTW3_ROOT_DIR=
12-Mar-2024 09:37:26 -- FFTW3_INCLUDE_DIR=/usr/include
12-Mar-2024 09:37:26 -- Found FFTW3: /usr/lib64/libfftw3.so (Required is at least version "3.3.2")
12-Mar-2024 09:37:26 CMAKE_BUILD_TYPE is RelWithDebInfo
12-Mar-2024 09:37:26 CMAKE_CXX_COMPILER_ID is GNU
12-Mar-2024 09:37:26 SIMD_ARCH is GENERIC
12-Mar-2024 09:37:26 CMAKE_CXX_FLAGS is -I/source/work/sakura-libsakura-5.1.3/libsakura/build/bin -I/source/work/sakura-libsakura-5.1.3/libsakura/src  -std=c++11 -I/usr/include/eigen3 -I/usr/include -m64 -Wall -Wno-deprecated-register -fPIC -pipe
12-Mar-2024 09:37:26 default CMAKE_CXX_FLAGS_RELEASE is -O3 -DNDEBUG
12-Mar-2024 09:37:26 default CMAKE_CXX_FLAGS_DEBUG is -g
12-Mar-2024 09:37:26 CMAKE_CXX_FLAGS_RELEASE was set to -funroll-all-loops -O3 -DNDEBUG
12-Mar-2024 09:37:26 -- Configuring done
12-Mar-2024 09:37:26 -- Generating done
12-Mar-2024 09:37:26 -- Build files have been written to: /source/work/sakura-libsakura-5.1.3/libsakura/build
12-Mar-2024 09:37:26 Building and installing libsakura
12-Mar-2024 09:37:26 [  7%] Building CXX object bin/CMakeFiles/sakura.dir/bit_operation.cc.o
12-Mar-2024 09:37:26 [ 14%] Building CXX object bin/CMakeFiles/sakura.dir/convolution.cc.o
12-Mar-2024 09:37:26 [ 21%] Building CXX object bin/CMakeFiles/sakura.dir/baseline.cc.o
12-Mar-2024 09:37:26 [ 28%] Building CXX object bin/CMakeFiles/sakura.dir/bool_filter_collection.cc.o
12-Mar-2024 09:37:28 [ 35%] Building CXX object bin/CMakeFiles/sakura.dir/gridding.cc.o
12-Mar-2024 09:37:28 [ 42%] Building CXX object bin/CMakeFiles/sakura.dir/interpolation.cc.o
12-Mar-2024 09:37:28 [ 50%] Building CXX object bin/CMakeFiles/sakura.dir/normalization.cc.o
12-Mar-2024 09:37:28 [ 57%] Building CXX object bin/CMakeFiles/sakura.dir/numeric_operation.cc.o
12-Mar-2024 09:37:28 In file included from /usr/include/eigen3/Eigen/Core:420,
12-Mar-2024 09:37:28 from /source/work/sakura-libsakura-5.1.3/libsakura/src/normalization.cc:26:
12-Mar-2024 09:37:28 /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h: In instantiation of ‘struct Eigen::internal::copy_using_evaluator_traits<Eigen::internal::evaluator<Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<float, float>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<float, float>, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> > > >, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op<float, float> >’:
12-Mar-2024 09:37:28 /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:607:49:   required from ‘class Eigen::internal::generic_dense_assignment_kernel<Eigen::internal::evaluator<Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<float, float>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<float, float>, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> > > >, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op<float, float>, 0>’
12-Mar-2024 09:37:28 /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:739:10:   required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> >; SrcXprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<float, float>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<float, float>, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> > > >, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> > >; Functor = Eigen::internal::assign_op<float, float>]’
12-Mar-2024 09:37:28 /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:879:31:   required from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> >; SrcXprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<float, float>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<float, float>, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> > > >, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> > >; Functor = Eigen::internal::assign_op<float, float>; Weak = void]’
12-Mar-2024 09:37:28 /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> >; Src = Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<float, float>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<float, float>, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> > > >, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op<float, float>]’
12-Mar-2024 09:37:28 /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:804:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> >; Src = Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<float, float>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<float, float>, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> > > >, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op<float, float>; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing<Src>::value), void*>::type = void*; typename Eigen::internal::evaluator_traits<SrcXprType>::Shape = Eigen::DenseShape]’
12-Mar-2024 09:37:28 /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:782:18:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> >; Src = Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<float, float>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<float, float>, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> > > >, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> > >]’
12-Mar-2024 09:37:28 /usr/include/eigen3/Eigen/src/Core/Assign.h:41:28:   required from ‘Derived& Eigen::DenseBase<Derived>::operator=(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<float, float>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<float, float>, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> > > >, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> > >; Derived = Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> >]’
12-Mar-2024 09:37:28 /source/work/sakura-libsakura-5.1.3/libsakura/src/normalization.cc:55:16:   required from ‘static void {anonymous}::InPlaceImpl<DataType>::CalibrateData(size_t, const DataType*, const DataType*, DataType*) [with DataType = float; size_t = long unsigned int]’
12-Mar-2024 09:37:28 /source/work/sakura-libsakura-5.1.3/libsakura/src/normalization.cc:186:39:   required from ‘void {anonymous}::CalibrateData(size_t, const DataType*, const DataType*, const DataType*, DataType*) [with DataType = float; size_t = long unsigned int]’
12-Mar-2024 09:37:28 /source/work/sakura-libsakura-5.1.3/libsakura/src/normalization.cc:240:16:   required from here
12-Mar-2024 09:37:28 /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:86:63: warning: enum constant in boolean context [-Wint-in-bool-context]
12-Mar-2024 09:37:28 86 |     MayLinearVectorize = bool(MightVectorize) && MayLinearize && DstHasDirectAccess
12-Mar-2024 09:37:28 |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
12-Mar-2024 09:37:28 In file included from /usr/include/eigen3/Eigen/Core:420,
12-Mar-2024 09:37:28 from /source/work/sakura-libsakura-5.1.3/libsakura/src/normalization.cc:26:
12-Mar-2024 09:37:28 /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:90:55: warning: enum constant in boolean context [-Wint-in-bool-context]
12-Mar-2024 09:37:28 90 |     MaySliceVectorize  = bool(MightVectorize) && bool(DstHasDirectAccess)
12-Mar-2024 09:37:28 |                                                       ^~~~~~~~~~~~~~~~~~
12-Mar-2024 09:37:28 In file included from /usr/include/eigen3/Eigen/Core:420,
12-Mar-2024 09:37:28 from /source/work/sakura-libsakura-5.1.3/libsakura/src/normalization.cc:26:
12-Mar-2024 09:37:28 /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h: In instantiation of ‘struct Eigen::internal::copy_using_evaluator_traits<Eigen::internal::evaluator<Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<float, float>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<float, float>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<float>, const Eigen::Array<float, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> > > >, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op<float, float> >’:
12-Mar-2024 09:37:28 /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:607:49:   required from ‘class Eigen::internal::generic_dense_assignment_kernel<Eigen::internal::evaluator<Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<float, float>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<float, float>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<float>, const Eigen::Array<float, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> > > >, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op<float, float>, 0>’
12-Mar-2024 09:37:28 /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:739:10:   required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> >; SrcXprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<float, float>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<float, float>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<float>, const Eigen::Array<float, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> > > >, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> > >; Functor = Eigen::internal::assign_op<float, float>]’
12-Mar-2024 09:37:28 /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:879:31:   required from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> >; SrcXprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<float, float>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<float, float>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<float>, const Eigen::Array<float, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> > > >, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> > >; Functor = Eigen::internal::assign_op<float, float>; Weak = void]’
12-Mar-2024 09:37:28 /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> >; Src = Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<float, float>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<float, float>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<float>, const Eigen::Array<float, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> > > >, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op<float, float>]’
12-Mar-2024 09:37:28 /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:804:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> >; Src = Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<float, float>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<float, float>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<float>, const Eigen::Array<float, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> > > >, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op<float, float>; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing<Src>::value), void*>::type = void*; typename Eigen::internal::evaluator_traits<SrcXprType>::Shape = Eigen::DenseShape]’
12-Mar-2024 09:37:28 /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:782:18:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> >; Src = Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<float, float>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<float, float>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<float>, const Eigen::Array<float, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> > > >, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> > >]’
12-Mar-2024 09:37:28 /usr/include/eigen3/Eigen/src/Core/Assign.h:41:28:   required from ‘Derived& Eigen::DenseBase<Derived>::operator=(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<float, float>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<float, float>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<float>, const Eigen::Array<float, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float, float>, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> > > >, const Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> > >; Derived = Eigen::Map<Eigen::Array<float, -1, 1>, 16, Eigen::Stride<0, 0> >]’
12-Mar-2024 09:37:28 /source/work/sakura-libsakura-5.1.3/libsakura/src/normalization.cc:66:16:   required from ‘static void {anonymous}::InPlaceImpl<DataType>::CalibrateData(DataType, size_t, const DataType*, DataType*) [with DataType = float; size_t = long unsigned int]’
12-Mar-2024 09:37:42 Failing task since return code of [/export/home/cbt-el7-8/bamboohome/temp/CASA-CRBC661-BPML228-13-ScriptBuildTask-8062648075797688330.sh] was 143 while expected 0
12-Mar-2024 09:37:42 Force Stop build feature is enabled for current plan. Either Bamboo has detected the build has hung or it has been manually stopped.
12-Mar-2024 09:37:42 Attempting to generate stack trace and terminate spawned sub-processes of process id: 528
12-Mar-2024 09:37:42 Found related process: pid: 16342 ppid: 1 pgid: 1796 %cpu: 0.4 %mem: 0.0 cmd: python
12-Mar-2024 09:37:42 getStackTraceAndKillRelatedProcesses for 1 processes
12-Mar-2024 09:37:42 Executing kill -3 16342
12-Mar-2024 09:37:42 Finished task 'Create casalith' with result: Failed
12-Mar-2024 09:37:42 Starting task 'Clean up' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script'
12-Mar-2024 09:37:42
Beginning to execute external process for build 'CASA - CMake Release Build Casalith 6.6+ - release-6.6.1 - Build and Package Many Linux 2.28 #13 (CASA-CRBC661-BPML228-13)'
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bamboo_capability_system_builder_ant_Ant=/usr
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12-Mar-2024 09:37:42 Starting cleanup
12-Mar-2024 09:37:42 Error response from daemon: No such container: build_container
12-Mar-2024 09:37:47 Killing: 16342
12-Mar-2024 09:37:47 Executing kill 16342
12-Mar-2024 09:37:47 /source/work/sakura-libsakura-5.1.3/libsakura/src/normalization.cc:205:39:   required from ‘void {anonymous}::CalibrateData(DataType, size_t, const DataType*, const
12-Mar-2024 09:37:52 Force Stop build feature is enabled for current plan. Either Bamboo has detected the build has hung or it has been manually stopped.
12-Mar-2024 09:37:52 Has finished generating stack trace and terminating spawned sub-processes of process id: 528
12-Mar-2024 09:37:52 Failing task since return code of [/export/home/cbt-el7-8/bamboohome/temp/CASA-CRBC661-BPML228-13-ScriptBuildTask-9169014253106785358.sh] was 143 while expected 0
12-Mar-2024 09:37:52 Finished task 'Clean up' with result: Failed
12-Mar-2024 09:37:52 Running post build plugin 'Docker Container Cleanup'
12-Mar-2024 09:37:52
Beginning to execute external process for build 'CASA - CMake Release Build Casalith 6.6+ - release-6.6.1 - Build and Package Many Linux 2.28 #13 (CASA-CRBC661-BPML228-13)'
... running command line:
/bin/docker rm -f casalith_container
... in: /export/home/cbt-el7-8/bamboohome/xml-data/build-dir/CASA-CRBC661-BPML228
12-Mar-2024 09:38:00 casalith_container
12-Mar-2024 09:38:00 Running post build plugin 'NCover Results Collector'
12-Mar-2024 09:38:00 Running post build plugin 'Build Results Label Collector'
12-Mar-2024 09:38:00 Running post build plugin 'Clover Results Collector'
12-Mar-2024 09:38:00 Running post build plugin 'npm Cache Cleanup'
12-Mar-2024 09:38:00 Running post build plugin 'Artifact Copier'
12-Mar-2024 09:38:00 Publishing an artifact: ManyLinux228 Python 3.8 Tool wheel
12-Mar-2024 09:38:00 Failing as no matching files has been found and empty artifacts are not allowed.
12-Mar-2024 09:38:00 Unable to publish artifact [ManyLinux228 Python 3.8 Tool wheel]:
12-Mar-2024 09:38:00 The artifact is required, build will now fail.
12-Mar-2024 09:38:00 The artifact hasn't been successfully published after 58.48 ms
12-Mar-2024 09:38:00 Publishing an artifact: ManyLinux228  Python 3.8 Task wheel
12-Mar-2024 09:38:00 Failing as no matching files has been found and empty artifacts are not allowed.
12-Mar-2024 09:38:00 Unable to publish artifact [ManyLinux228  Python 3.8 Task wheel]:
12-Mar-2024 09:38:00 The artifact is required, build will now fail.
12-Mar-2024 09:38:00 The artifact hasn't been successfully published after 15.44 ms
12-Mar-2024 09:38:00 Publishing an artifact: ManyLinux228 Python 3.8 Shell wheel
12-Mar-2024 09:38:00 Failing as no matching files has been found and empty artifacts are not allowed.
12-Mar-2024 09:38:00 Unable to publish artifact [ManyLinux228 Python 3.8 Shell wheel]:
12-Mar-2024 09:38:00 The artifact is required, build will now fail.
12-Mar-2024 09:38:00 The artifact hasn't been successfully published after 18.07 ms
12-Mar-2024 09:38:00 Publishing an artifact: ManyLinux228  Python 3.8 debug_symbols
12-Mar-2024 09:38:00 Unable to publish artifact [ManyLinux228  Python 3.8 debug_symbols]: the source directory /export/home/cbt-el7-8/bamboohome/xml-data/build-dir/CASA-CRBC661-BPML228/source/casa6/casatools/debugsymbols does not exist.
12-Mar-2024 09:38:00 The artifact hasn't been successfully published after 432.1 μs
12-Mar-2024 09:38:00 Publishing an artifact: ManyLinux228 Python 3.8 Tar 2
12-Mar-2024 09:38:00 Failing as no matching files has been found and empty artifacts are not allowed.
12-Mar-2024 09:38:00 Unable to publish artifact [ManyLinux228 Python 3.8 Tar 2]:
12-Mar-2024 09:38:00 The artifact is required, build will now fail.
12-Mar-2024 09:38:00 The artifact hasn't been successfully published after 15.90 ms
12-Mar-2024 09:38:00 Publishing an artifact: ManyLinux228 Casatestutils
12-Mar-2024 09:38:00 Failing as no matching files has been found and empty artifacts are not allowed.
12-Mar-2024 09:38:00 Unable to publish artifact [ManyLinux228 Casatestutils]:
12-Mar-2024 09:38:00 The artifact is required, build will now fail.
12-Mar-2024 09:38:00 The artifact hasn't been successfully published after 18.91 ms
12-Mar-2024 09:38:00 Finalising the build...
12-Mar-2024 09:38:00 Stopping timer.
12-Mar-2024 09:38:00 Build CASA-CRBC661-BPML228-13 completed.
12-Mar-2024 09:38:01 Running on server: post build plugin 'Build Hanging Detection Configuration'
12-Mar-2024 09:38:01 Running on server: post build plugin 'NCover Results Collector'
12-Mar-2024 09:38:01 Running on server: post build plugin 'Build Labeller'
12-Mar-2024 09:38:01 Running on server: post build plugin 'Clover Delta Calculator'
12-Mar-2024 09:38:01 Running on server: post build plugin 'Maven Dependencies Postprocessor'
12-Mar-2024 09:38:01 All post build plugins have finished
12-Mar-2024 09:38:01 Generating build results summary...
12-Mar-2024 09:38:01 Saving build results to disk...
12-Mar-2024 09:38:01 Store variable context...
12-Mar-2024 09:38:01 Finished building CASA-CRBC661-BPML228-13.