Build: #13 did not complete

Job: Build and Package Many Linux 2014 did not complete

Build log

The build generated 798 lines of output. Download or view full build log.

12-Mar-2024 09:32:12 Build CASA - CMake Release Build Casalith 6.6+ - release-6.6.1 - Build and Package Many Linux 2014 #13 (CASA-CRBC661-BPML2014S-13) is being prepared for building on agent cbt-el7-2.cv.nrao.edu, bamboo version: 9.2.7
12-Mar-2024 09:32:12 Remote agent on host cbt-el7-2.cv.nrao.edu
12-Mar-2024 09:32:12 Build working directory is /export/home/cbt-el7-2/bamboohome/xml-data/build-dir/CASA-CRBC661-BPML2014S
12-Mar-2024 09:32:12 Executing build CASA - CMake Release Build Casalith 6.6+ - release-6.6.1 - Build and Package Many Linux 2014 #13 (CASA-CRBC661-BPML2014S-13)
12-Mar-2024 09:32:12 Starting task 'Clean working directory task' of type 'com.atlassian.bamboo.plugins.bamboo-artifact-downloader-plugin:cleanWorkingDirectoryTask'
12-Mar-2024 09:32:12 Cleaning working directory '/export/home/cbt-el7-2/bamboohome/xml-data/build-dir/CASA-CRBC661-BPML2014S'
12-Mar-2024 09:32:12 Finished task 'Clean working directory task' with result: Success
12-Mar-2024 09:32:12 Running pre-build action: Build Log Labeller Pre Build Action
12-Mar-2024 09:32:12 Running pre-build action: VCS Version Collector
12-Mar-2024 09:32:12 Build CASA - CMake Release Build Casalith 6.6+ - release-6.6.1 - Build and Package Many Linux 2014 #13 (CASA-CRBC661-BPML2014S-13) started building on agent 'cbt-el7-2.cv.nrao.edu' (Remote agent on host cbt-el7-2.cv.nrao.edu)
12-Mar-2024 09:32:12 Starting task 'Create cache and wheeldirectory' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script'
12-Mar-2024 09:32:12
Beginning to execute external process for build 'CASA - CMake Release Build Casalith 6.6+ - release-6.6.1 - Build and Package Many Linux 2014 #13 (CASA-CRBC661-BPML2014S-13)'
... running command line:
/export/home/cbt-el7-2/bamboohome/temp/CASA-CRBC661-BPML2014S-13-ScriptBuildTask-1645589870001648518.sh
... in: /export/home/cbt-el7-2/bamboohome/xml-data/build-dir/CASA-CRBC661-BPML2014S
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12-Mar-2024 09:32:12 mkdir: cannot create directory ‘../ccache_ml2014’: File exists
12-Mar-2024 09:32:12 Finished task 'Create cache and wheeldirectory' with result: Success
12-Mar-2024 09:32:12
Substituting variable: ${bamboo.planRepository.branchName} with release/6.6.1
12-Mar-2024 09:32:12 Starting task 'Clone casa6, shell and casa-build-utils' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script'
12-Mar-2024 09:32:12
Beginning to execute external process for build 'CASA - CMake Release Build Casalith 6.6+ - release-6.6.1 - Build and Package Many Linux 2014 #13 (CASA-CRBC661-BPML2014S-13)'
... running command line:
/export/home/cbt-el7-2/bamboohome/temp/CASA-CRBC661-BPML2014S-13-ScriptBuildTask-4026050467281666960.sh
... in: /export/home/cbt-el7-2/bamboohome/xml-data/build-dir/CASA-CRBC661-BPML2014S
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12-Mar-2024 09:32:12 branch: release/6.6.1
12-Mar-2024 09:32:13 Cloning into 'casa-build-utils'...
12-Mar-2024 09:32:13 Switched to a new branch 'release/6.6.1'
12-Mar-2024 09:32:13 Branch release/6.6.1 set up to track remote branch release/6.6.1 from origin.
12-Mar-2024 09:32:13 /export/home/cbt-el7-2/bamboohome/xml-data/build-dir/CASA-CRBC661-BPML2014S/source
12-Mar-2024 09:32:13 Cloning into 'casa6'...
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12-Mar-2024 09:32:33 Checking out files:  85% (7839/9222)   
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12-Mar-2024 09:32:33 Checking out files:  87% (8024/9222)   
12-Mar-2024 09:32:33 Checking out files:  88% (8116/9222)   
12-Mar-2024 09:32:33 Checking out files:  89% (8208/9222)   
12-Mar-2024 09:32:33 Checking out files:  90% (8300/9222)   
12-Mar-2024 09:32:33 Checking out files:  91% (8393/9222)   
12-Mar-2024 09:32:33 Checking out files:  92% (8485/9222)   
12-Mar-2024 09:32:33 Checking out files:  93% (8577/9222)   
12-Mar-2024 09:32:33 Checking out files:  94% (8669/9222)   
12-Mar-2024 09:32:33 Checking out files:  95% (8761/9222)   
12-Mar-2024 09:32:34 Checking out files:  95% (8821/9222)   
12-Mar-2024 09:32:34 Checking out files:  96% (8854/9222)   
12-Mar-2024 09:32:34 Checking out files:  97% (8946/9222)   
12-Mar-2024 09:32:34 Checking out files:  98% (9038/9222)   
12-Mar-2024 09:32:34 Checking out files:  99% (9130/9222)   
12-Mar-2024 09:32:34 Checking out files: 100% (9222/9222)   
12-Mar-2024 09:32:34 Checking out files: 100% (9222/9222), done.
12-Mar-2024 09:32:34 Submodule 'casatools/casacore' (https://github.com/casacore/casacore.git) registered for path 'casatools/casacore'
12-Mar-2024 09:32:34 Submodule 'casatools/grpc-source' (https://github.com/grpc/grpc) registered for path 'casatools/grpc-source'
12-Mar-2024 09:32:34 Cloning into 'casatools/casacore'...
12-Mar-2024 09:32:54 Submodule path 'casatools/casacore': checked out 'f1c629840ed35b96f00e67ea1dbaa6566756e3ba'
12-Mar-2024 09:32:54 Cloning into 'casatools/grpc-source'...
12-Mar-2024 09:33:56 Submodule path 'casatools/grpc-source': checked out 'cca868ac8f3641df4003a82b7fc54c921e14f765'
12-Mar-2024 09:33:56 Submodule 'third_party/abseil-cpp' (https://github.com/abseil/abseil-cpp) registered for path 'third_party/abseil-cpp'
12-Mar-2024 09:33:56 Submodule 'third_party/benchmark' (https://github.com/google/benchmark) registered for path 'third_party/benchmark'
12-Mar-2024 09:33:56 Submodule 'third_party/bloaty' (https://github.com/google/bloaty.git) registered for path 'third_party/bloaty'
12-Mar-2024 09:33:56 Submodule 'third_party/boringssl' (https://github.com/google/boringssl.git) registered for path 'third_party/boringssl'
12-Mar-2024 09:33:56 Submodule 'third_party/boringssl-with-bazel' (https://github.com/google/boringssl.git) registered for path 'third_party/boringssl-with-bazel'
12-Mar-2024 09:33:56 Submodule 'third_party/cares/cares' (https://github.com/c-ares/c-ares.git) registered for path 'third_party/cares/cares'
12-Mar-2024 09:33:56 Submodule 'third_party/gflags' (https://github.com/gflags/gflags.git) registered for path 'third_party/gflags'
12-Mar-2024 09:33:56 Submodule 'third_party/googletest' (https://github.com/google/googletest.git) registered for path 'third_party/googletest'
12-Mar-2024 09:33:56 Submodule 'third_party/protobuf' (https://github.com/google/protobuf.git) registered for path 'third_party/protobuf'
12-Mar-2024 09:33:56 Submodule 'third_party/zlib' (https://github.com/madler/zlib) registered for path 'third_party/zlib'
12-Mar-2024 09:33:56 Cloning into 'third_party/abseil-cpp'...
12-Mar-2024 09:33:58 Submodule path 'casatools/grpc-source/third_party/abseil-cpp': checked out 'cc4bed2d74f7c8717e31f9579214ab52a9c9c610'
12-Mar-2024 09:33:59 Cloning into 'third_party/benchmark'...
12-Mar-2024 09:33:59 Submodule path 'casatools/grpc-source/third_party/benchmark': checked out '5b7683f49e1e9223cf9927b24f6fd3d6bd82e3f8'
12-Mar-2024 09:33:59 Cloning into 'third_party/bloaty'...
12-Mar-2024 09:34:00 Submodule path 'casatools/grpc-source/third_party/bloaty': checked out '73594cde8c9a52a102c4341c244c833aa61b9c06'
12-Mar-2024 09:34:00 Submodule 'third_party/googletest' (https://github.com/google/googletest.git) registered for path 'third_party/googletest'
12-Mar-2024 09:34:01 Submodule 'third_party/libFuzzer' (https://chromium.googlesource.com/chromium/llvm-project/llvm/lib/Fuzzer) registered for path 'third_party/libFuzzer'
12-Mar-2024 09:34:01 Submodule 'third_party/re2' (https://github.com/google/re2) registered for path 'third_party/re2'
12-Mar-2024 09:34:01 Cloning into 'third_party/googletest'...
12-Mar-2024 09:34:03 Submodule path 'casatools/grpc-source/third_party/bloaty/third_party/googletest': checked out 'a2b8a8e07628e5fd60644b6dd99c1b5e7d7f1f47'
12-Mar-2024 09:34:03 Cloning into 'third_party/libFuzzer'...
12-Mar-2024 09:34:04 Submodule path 'casatools/grpc-source/third_party/bloaty/third_party/libFuzzer': checked out '1b543d6e5073b56be214394890c9193979a3d7e1'
12-Mar-2024 09:34:04 Cloning into 'third_party/re2'...
12-Mar-2024 09:34:05 Submodule path 'casatools/grpc-source/third_party/bloaty/third_party/re2': checked out 'c964d9b07816f9b52ca692e23b8b3dba33beec54'
12-Mar-2024 09:34:05 Cloning into 'third_party/boringssl'...
12-Mar-2024 09:34:39 Submodule path 'casatools/grpc-source/third_party/boringssl': checked out 'be2ee342d3781ddb954f91f8a7e660c6f59e87e5'
12-Mar-2024 09:34:40 Cloning into 'third_party/boringssl-with-bazel'...
12-Mar-2024 09:35:13 Submodule path 'casatools/grpc-source/third_party/boringssl-with-bazel': checked out '886e7d75368e3f4fab3f4d0d3584e4abfc557755'
12-Mar-2024 09:35:13 Cloning into 'third_party/cares/cares'...
12-Mar-2024 09:35:14 Submodule path 'casatools/grpc-source/third_party/cares/cares': checked out '3be1924221e1326df520f8498d704a5c4c8d0cce'
12-Mar-2024 09:35:14 Cloning into 'third_party/gflags'...
12-Mar-2024 09:35:15 Submodule path 'casatools/grpc-source/third_party/gflags': checked out '30dbc81fb5ffdc98ea9b14b1918bfe4e8779b26e'
12-Mar-2024 09:35:15 Submodule 'doc' (https://github.com/gflags/gflags.git) registered for path 'doc'
12-Mar-2024 09:35:15 Cloning into 'doc'...
12-Mar-2024 09:35:16 Submodule path 'casatools/grpc-source/third_party/gflags/doc': checked out '971dd2a4fadac9cdab174c523c22df79efd63aa5'
12-Mar-2024 09:35:16 Cloning into 'third_party/googletest'...
12-Mar-2024 09:35:18 Submodule path 'casatools/grpc-source/third_party/googletest': checked out 'ec44c6c1675c25b9827aacd08c02433cccde7780'
12-Mar-2024 09:35:18 Cloning into 'third_party/protobuf'...
12-Mar-2024 09:35:34 Submodule path 'casatools/grpc-source/third_party/protobuf': checked out '2761122b810fe8861004ae785cc3ab39f384d342'
12-Mar-2024 09:35:34 Submodule 'third_party/benchmark' (https://github.com/google/benchmark.git) registered for path 'third_party/benchmark'
12-Mar-2024 09:35:34 Cloning into 'third_party/benchmark'...
12-Mar-2024 09:35:35 Submodule path 'casatools/grpc-source/third_party/protobuf/third_party/benchmark': checked out '360e66c1c4777c99402cf8cd535aa510fee16573'
12-Mar-2024 09:35:35 Cloning into 'third_party/zlib'...
12-Mar-2024 09:35:36 Submodule path 'casatools/grpc-source/third_party/zlib': checked out 'cacf7f1d4e3d44d871b605da3b647f07d718623f'
12-Mar-2024 09:35:38 M        casatools/casacore
12-Mar-2024 09:35:38 Branch release/6.6.1 set up to track remote branch release/6.6.1 from origin.
12-Mar-2024 09:35:38 Switched to a new branch 'release/6.6.1'
12-Mar-2024 09:35:38 Synchronizing submodule url for 'casatools/casacore'
12-Mar-2024 09:35:38 Synchronizing submodule url for 'casatools/grpc-source'
12-Mar-2024 09:35:39 Submodule path 'casatools/casacore': checked out 'a43b76dea5d6fdef9feabb68748cd2b62043cfdc'
12-Mar-2024 09:35:41 /export/home/cbt-el7-2/bamboohome/xml-data/build-dir/CASA-CRBC661-BPML2014S/source
12-Mar-2024 09:35:41 Cloning into 'casashell'...
12-Mar-2024 09:35:42 Switched to a new branch 'release/6.6.1'
12-Mar-2024 09:35:42 Branch release/6.6.1 set up to track remote branch release/6.6.1 from origin.
12-Mar-2024 09:35:42 /export/home/cbt-el7-2/bamboohome/xml-data/build-dir/CASA-CRBC661-BPML2014S/source
12-Mar-2024 09:35:42 Finished task 'Clone casa6, shell and casa-build-utils' with result: Success
12-Mar-2024 09:35:42
Substituting variable: ${bamboo.working.directory} with /export/home/cbt-el7-2/bamboohome/xml-data/build-dir/CASA-CRBC661-BPML2014S
12-Mar-2024 09:35:42 Starting task 'Pull manylinux2014 casalith image' of type 'com.atlassian.bamboo.plugins.bamboo-docker-plugin:task.docker.cli'
12-Mar-2024 09:35:42
Beginning to execute external process for build 'CASA - CMake Release Build Casalith 6.6+ - release-6.6.1 - Build and Package Many Linux 2014 #13 (CASA-CRBC661-BPML2014S-13)'
... running command line:
/bin/docker pull casa-docker.nrao.edu:5000/casabuild-manylinux2014-cmake-only:4
... in: /export/home/cbt-el7-2/bamboohome/xml-data/build-dir/CASA-CRBC661-BPML2014S
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12-Mar-2024 09:35:42 4: Pulling from casabuild-manylinux2014-cmake-only
12-Mar-2024 09:35:42 Digest: sha256:f9c54098f3a6d6bd83c13def40c29d6acf40bb37c8b2cf6f5dd3379fbdb11b85
12-Mar-2024 09:35:42 Status: Image is up to date for casa-docker.nrao.edu:5000/casabuild-manylinux2014-cmake-only:4
12-Mar-2024 09:35:42 casa-docker.nrao.edu:5000/casabuild-manylinux2014-cmake-only:4
12-Mar-2024 09:35:42 Finished task 'Pull manylinux2014 casalith image' with result: Success
12-Mar-2024 09:35:42 Starting task 'Stop and remove casalith-container' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script'
12-Mar-2024 09:35:42
Beginning to execute external process for build 'CASA - CMake Release Build Casalith 6.6+ - release-6.6.1 - Build and Package Many Linux 2014 #13 (CASA-CRBC661-BPML2014S-13)'
... running command line:
/export/home/cbt-el7-2/bamboohome/temp/CASA-CRBC661-BPML2014S-13-ScriptBuildTask-2655636664373369784.sh
... in: /export/home/cbt-el7-2/bamboohome/xml-data/build-dir/CASA-CRBC661-BPML2014S
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bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_9=/export/home/cbt-el7-2/bamboohome/temp/CASA-CRBC661-BPML2014S-13-ScriptBuildTask-1645589870001648518.sh
bamboo_shortPlanKey=CRBC661
bamboo_al_password=********
bamboo_shortJobKey=BPML2014S
bamboo_build_commandline_com_atlassian_bamboo_plugins_bamboo_docker_plugin_task_docker_cli_17=/bin/docker pull casa-docker.nrao.edu:5000/casabuild-manylinux2014-cmake-only:4
bamboo_planRepository_2_name=OPEN-CASA-PKG
bamboo_buildTimeStamp=2024-03-12T09:32:12.338-04:00
bamboo_repository_previous_revision_number=eb84f4edbb841373281d852085fbe19adb326c91
bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_3=/export/home/cbt-el7-2/bamboohome/temp/CASA-CRBC661-BPML2014S-13-ScriptBuildTask-4026050467281666960.sh
bamboo_repository_git_branch=release/6.6.1
bamboo_buildResultKey=CASA-CRBC661-BPML2014S-13
bamboo_buildPlanName=CASA - CMake Release Build Casalith 6.6+ - release-6.6.1 - Build and Package Many Linux 2014
bamboo_planRepository_1_revision=0f5f5457976fc70d8bb77e9995e1e54c4b6ad40d
bamboo_capability_system_hg_executable=/bin/hg
bamboo_repository_name=OPEN-CASA-PKG
bamboo_planRepository_2_previousRevision=70c7e96a1cc7826da261f7bb271e831eaee7560f
bamboo_buildFailed=false
bamboo_capability_system_docker_executable=/bin/docker
bamboo_repository_86278745_git_repositoryUrl=ssh://git@open-bitbucket.nrao.edu:7999/casa/casa-pkg.git
bamboo_agentWorkingDirectory=/export/home/cbt-el7-2/bamboohome/xml-data/build-dir
bamboo_planRepository_2_revision=70c7e96a1cc7826da261f7bb271e831eaee7560f
bamboo_capability_system_git_executable=/bin/git
bamboo_repository_git_username=
bamboo_capability_system_jdk_JDK_1_8_0_232=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.232.b09-0.el7_7.x86_64
bamboo_planRepository_1_previousRevision=eb84f4edbb841373281d852085fbe19adb326c91
bamboo_capability_operating_system=EL7
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bamboo_shortPlanBranchName=release-6.6.1
bamboo_capability_project=CASA
bamboo_planRepository_2_type=bbserver
bamboo_capability_casa6docker=true
bamboo_plan_storageTag=plan-92078082
bamboo_planRepository_2_repositoryUrl=ssh://git@open-bitbucket.nrao.edu:7999/casa/casa-pkg.git
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bamboo_repository_git_repositoryUrl=ssh://git@open-bitbucket.nrao.edu:7999/casa/casa6.git
bamboo_working_directory=/export/home/cbt-el7-2/bamboohome/xml-data/build-dir/CASA-CRBC661-BPML2014S
bamboo_RerunBuildTriggerReason_noOfRetries=2
bamboo_planRepository_1_repositoryUrl=ssh://git@open-bitbucket.nrao.edu:7999/casa/casa6.git
bamboo_capability_system_jdk_JDK_1_8=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.232.b09-0.el7_7.x86_64
bamboo_repository_86278745_git_username=
12-Mar-2024 09:35:42 Error response from daemon: No such container: casalith_container
12-Mar-2024 09:35:42 Error response from daemon: No such container: casalith_container
12-Mar-2024 09:35:42 Removed casalith_container
12-Mar-2024 09:35:42 Finished task 'Stop and remove casalith-container' with result: Success
12-Mar-2024 09:35:42
Substituting variable: ${bamboo.working.directory} with /export/home/cbt-el7-2/bamboohome/xml-data/build-dir/CASA-CRBC661-BPML2014S
12-Mar-2024 09:35:42
Substituting variable: ${bamboo.working.directory} with /export/home/cbt-el7-2/bamboohome/xml-data/build-dir/CASA-CRBC661-BPML2014S
12-Mar-2024 09:35:42 Starting task 'Start Casalith container' of type 'com.atlassian.bamboo.plugins.bamboo-docker-plugin:task.docker.cli'
12-Mar-2024 09:35:42 Running image name (casa-docker.nrao.edu:5000/casabuild-manylinux2014-cmake-only:4)
12-Mar-2024 09:35:42
Beginning to execute external process for build 'CASA - CMake Release Build Casalith 6.6+ - release-6.6.1 - Build and Package Many Linux 2014 #13 (CASA-CRBC661-BPML2014S-13)'
... running command line:
/bin/docker run --volume /export/home/cbt-el7-2/bamboohome/xml-data/build-dir/CASA-CRBC661-BPML2014S/source:/source --volume /export/home/cbt-el7-2/bamboohome/xml-data/build-dir/CASA-CRBC661-BPML2014S/../ccache_ml2014:/ccache --detach -v /opt/casa/data/master:/opt/casa/data:ro --name casalith_container casa-docker.nrao.edu:5000/casabuild-manylinux2014-cmake-only:4 tail -f /dev/null
... in: /export/home/cbt-el7-2/bamboohome/xml-data/build-dir/CASA-CRBC661-BPML2014S
bamboo_planRepository_1_branch=release/6.6.1
bamboo_planRepository_2_branch=master
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bamboo_repository_revision_number=0f5f5457976fc70d8bb77e9995e1e54c4b6ad40d
bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_19=/export/home/cbt-el7-2/bamboohome/temp/CASA-CRBC661-BPML2014S-13-ScriptBuildTask-2655636664373369784.sh
bamboo_repository_92209154_revision_number=0f5f5457976fc70d8bb77e9995e1e54c4b6ad40d
bamboo_buildKey=CASA-CRBC661-BPML2014S
bamboo_planRepository_2_branchDisplayName=master
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bamboo_planRepository_repositoryUrl=ssh://git@open-bitbucket.nrao.edu:7999/casa/casa6.git
bamboo_atlutil_user=casaadm
bamboo_repository_92209154_previous_revision_number=eb84f4edbb841373281d852085fbe19adb326c91
bamboo_agentId=40304645
bamboo_repository_86278745_name=OPEN-CASA-PKG
bamboo_signature=08EA1D734E321F460FE5FE050129891F2F79A822
bamboo_planRepository_revision=0f5f5457976fc70d8bb77e9995e1e54c4b6ad40d
bamboo_casaadm_password=********
bamboo_notarytool_keychainprofile=casa_notarization
bamboo_planRepository_previousRevision=eb84f4edbb841373281d852085fbe19adb326c91
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bamboo_notarytool_keychain_password=********
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bamboo_repository_92209154_git_branch=release/6.6.1
bamboo_repository_86278745_previous_revision_number=70c7e96a1cc7826da261f7bb271e831eaee7560f
bamboo_capability_system_jdk_JDK_1_8_0_392=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.392.b08-2.el7_9.x86_64
bamboo_planRepository_1_type=bbserver
bamboo_planRepository_branchName=release/6.6.1
bamboo_notarytool_keychain_path=/Users/casaci/notary.keychain
bamboo_capability_system_jdk_JDK=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.232.b09-0.el7_7.x86_64
bamboo_atlutil_password=********
bamboo_planRepository_1_username=
bamboo_planRepository_type=bbserver
bamboo_ManualBuildTriggerReason_userName=vsuorant
bamboo_git_cache_directory=/export/home/cbt-el7-2/bamboohome/xml-data/build-dir/_git-repositories-cache
bamboo_planRepository_2_branchName=master
bamboo_repository_86278745_branch_name=master
bamboo_capability_system_builder_node_Node_js=/usr/bin/node
bamboo_repository_92209154_branch_name=release/6.6.1
bamboo_capability_system_builder_ant_Ant=/usr
bamboo_tmp_directory=/export/home/cbt-el7-2/bamboohome/temp
bamboo_planKey=CASA-CRBC661
bamboo_planRepository_username=
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bamboo_resultsUrl=https://open-bamboo.nrao.edu/browse/CASA-CRBC661-BPML2014S-13
bamboo_build_working_directory=/export/home/cbt-el7-2/bamboohome/xml-data/build-dir/CASA-CRBC661-BPML2014S
bamboo_planRepository_1_name=Casa6
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bamboo_shortPlanName=CMake Release Build Casalith 6.6+
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bamboo_planRepository_2_username=
bamboo_planRepository_name=Casa6
bamboo_buildNumber=13
bamboo_username=vsuorant@nrao.edu
bamboo_repository_92209154_git_repositoryUrl=ssh://git@open-bitbucket.nrao.edu:7999/casa/casa6.git
bamboo_ManualBuildTriggerReason_stageName=Tag
bamboo_planName=CASA - CMake Release Build Casalith 6.6+ - release-6.6.1
bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_9=/export/home/cbt-el7-2/bamboohome/temp/CASA-CRBC661-BPML2014S-13-ScriptBuildTask-1645589870001648518.sh
bamboo_shortPlanKey=CRBC661
bamboo_al_password=********
bamboo_shortJobKey=BPML2014S
bamboo_build_commandline_com_atlassian_bamboo_plugins_bamboo_docker_plugin_task_docker_cli_17=/bin/docker pull casa-docker.nrao.edu:5000/casabuild-manylinux2014-cmake-only:4
bamboo_planRepository_2_name=OPEN-CASA-PKG
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bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_3=/export/home/cbt-el7-2/bamboohome/temp/CASA-CRBC661-BPML2014S-13-ScriptBuildTask-4026050467281666960.sh
bamboo_repository_git_branch=release/6.6.1
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bamboo_planRepository_1_revision=0f5f5457976fc70d8bb77e9995e1e54c4b6ad40d
bamboo_capability_system_hg_executable=/bin/hg
bamboo_repository_name=OPEN-CASA-PKG
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bamboo_buildFailed=false
bamboo_capability_system_docker_executable=/bin/docker
bamboo_repository_86278745_git_repositoryUrl=ssh://git@open-bitbucket.nrao.edu:7999/casa/casa-pkg.git
bamboo_agentWorkingDirectory=/export/home/cbt-el7-2/bamboohome/xml-data/build-dir
bamboo_planRepository_2_revision=70c7e96a1cc7826da261f7bb271e831eaee7560f
bamboo_capability_system_git_executable=/bin/git
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bamboo_capability_system_jdk_JDK_1_8_0_232=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.232.b09-0.el7_7.x86_64
bamboo_planRepository_1_previousRevision=eb84f4edbb841373281d852085fbe19adb326c91
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bamboo_plan_storageTag=plan-92078082
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bamboo_repository_86278745_git_branch=master
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bamboo_working_directory=/export/home/cbt-el7-2/bamboohome/xml-data/build-dir/CASA-CRBC661-BPML2014S
bamboo_RerunBuildTriggerReason_noOfRetries=2
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12-Mar-2024 09:35:44 588a03935811ca10ef9f55dd9fec14fb836097889a05d5e72c97dd2c4cd137fe
12-Mar-2024 09:35:45 Finished task 'Start Casalith container' with result: Success
12-Mar-2024 09:35:45
Substituting variable: ${bamboo.planRepository.branchName} with release/6.6.1
12-Mar-2024 09:35:45 Starting task 'Create casalith' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script'
12-Mar-2024 09:35:45
Beginning to execute external process for build 'CASA - CMake Release Build Casalith 6.6+ - release-6.6.1 - Build and Package Many Linux 2014 #13 (CASA-CRBC661-BPML2014S-13)'
... running command line:
/export/home/cbt-el7-2/bamboohome/temp/CASA-CRBC661-BPML2014S-13-ScriptBuildTask-3025930825307495635.sh
... in: /export/home/cbt-el7-2/bamboohome/xml-data/build-dir/CASA-CRBC661-BPML2014S
bamboo_planRepository_1_branch=release/6.6.1
bamboo_planRepository_2_branch=master
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bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_19=/export/home/cbt-el7-2/bamboohome/temp/CASA-CRBC661-BPML2014S-13-ScriptBuildTask-2655636664373369784.sh
bamboo_repository_92209154_revision_number=0f5f5457976fc70d8bb77e9995e1e54c4b6ad40d
bamboo_buildKey=CASA-CRBC661-BPML2014S
bamboo_planRepository_2_branchDisplayName=master
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bamboo_buildResultsUrl=https://open-bamboo.nrao.edu/browse/CASA-CRBC661-BPML2014S-13
bamboo_planRepository_repositoryUrl=ssh://git@open-bitbucket.nrao.edu:7999/casa/casa6.git
bamboo_atlutil_user=casaadm
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bamboo_casaadm_password=********
bamboo_notarytool_keychainprofile=casa_notarization
bamboo_planRepository_previousRevision=eb84f4edbb841373281d852085fbe19adb326c91
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bamboo_notarytool_keychain_password=********
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bamboo_repository_92209154_git_branch=release/6.6.1
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bamboo_capability_system_jdk_JDK_1_8_0_392=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.392.b08-2.el7_9.x86_64
bamboo_planRepository_1_type=bbserver
bamboo_planRepository_branchName=release/6.6.1
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bamboo_atlutil_password=********
bamboo_planRepository_1_username=
bamboo_planRepository_type=bbserver
bamboo_ManualBuildTriggerReason_userName=vsuorant
bamboo_git_cache_directory=/export/home/cbt-el7-2/bamboohome/xml-data/build-dir/_git-repositories-cache
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bamboo_repository_86278745_branch_name=master
bamboo_capability_system_builder_node_Node_js=/usr/bin/node
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bamboo_capability_system_builder_ant_Ant=/usr
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bamboo_planKey=CASA-CRBC661
bamboo_planRepository_username=
bamboo_planRepository_1_branchName=release/6.6.1
bamboo_capability_buildmachinetype=test
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bamboo_build_working_directory=/export/home/cbt-el7-2/bamboohome/xml-data/build-dir/CASA-CRBC661-BPML2014S
bamboo_planRepository_1_name=Casa6
bamboo_repository_92209154_git_username=
bamboo_capability_system_jdk_JDK_1_8_0_292=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.292.b10-1.el7_9.x86_64
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bamboo_ManualBuildTriggerReason_stageName=Tag
bamboo_planName=CASA - CMake Release Build Casalith 6.6+ - release-6.6.1
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bamboo_shortPlanKey=CRBC661
bamboo_al_password=********
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bamboo_build_commandline_com_atlassian_bamboo_plugins_bamboo_docker_plugin_task_docker_cli_17=/bin/docker pull casa-docker.nrao.edu:5000/casabuild-manylinux2014-cmake-only:4
bamboo_planRepository_2_name=OPEN-CASA-PKG
bamboo_buildTimeStamp=2024-03-12T09:32:12.338-04:00
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bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_3=/export/home/cbt-el7-2/bamboohome/temp/CASA-CRBC661-BPML2014S-13-ScriptBuildTask-4026050467281666960.sh
bamboo_repository_git_branch=release/6.6.1
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bamboo_planRepository_1_revision=0f5f5457976fc70d8bb77e9995e1e54c4b6ad40d
bamboo_capability_system_hg_executable=/bin/hg
bamboo_repository_name=OPEN-CASA-PKG
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bamboo_buildFailed=false
bamboo_capability_system_docker_executable=/bin/docker
bamboo_build_commandline_com_atlassian_bamboo_plugins_bamboo_docker_plugin_task_docker_cli_13=/bin/docker run --volume /export/home/cbt-el7-2/bamboohome/xml-data/build-dir/CASA-CRBC661-BPML2014S/source:/source --volume /export/home/cbt-el7-2/bamboohome/xml-data/build-dir/CASA-CRBC661-BPML2014S/../ccache_ml2014:/ccache --detach -v /opt/casa/data/master:/opt/casa/data:ro --name casalith_container casa-docker.nrao.edu:5000/casabuild-manylinux2014-cmake-only:4 tail -f /dev/null
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bamboo_agentWorkingDirectory=/export/home/cbt-el7-2/bamboohome/xml-data/build-dir
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bamboo_capability_system_git_executable=/bin/git
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bamboo_capability_system_jdk_JDK_1_8_0_232=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.232.b09-0.el7_7.x86_64
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bamboo_planRepository_1_repositoryUrl=ssh://git@open-bitbucket.nrao.edu:7999/casa/casa6.git
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bamboo_repository_86278745_git_username=
12-Mar-2024 09:35:45 branch: release/6.6.1
12-Mar-2024 09:35:45   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
12-Mar-2024 09:35:45                                  Dload  Upload   Total   Spent    Left  Speed
12-Mar-2024 09:35:45
12-Mar-2024 09:35:45   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
12-Mar-2024 09:35:45 100 6002k  100 6002k    0     0  21.0M      0 --:--:-- --:--:-- --:--:-- 21.3M
12-Mar-2024 09:35:46 [22859] Failed to execute script 'atlutil' due to unhandled exception!
12-Mar-2024 09:35:46 Traceback (most recent call last):
12-Mar-2024 09:35:46   File "atlutil.py", line 200, in <module>
12-Mar-2024 09:35:46   File "atlutil.py", line 165, in has_fix_version
12-Mar-2024 09:35:46   File "json/__init__.py", line 354, in loads
12-Mar-2024 09:35:46   File "json/decoder.py", line 339, in decode
12-Mar-2024 09:35:46   File "json/decoder.py", line 357, in raw_decode
12-Mar-2024 09:35:46 json.decoder.JSONDecodeError: Expecting value: line 1 column 1 (char 0)
12-Mar-2024 09:35:46 Already on 'release/6.6.1'
12-Mar-2024 09:35:47 CMake version:
12-Mar-2024 09:35:48 cmake3 version 3.17.5
12-Mar-2024 09:35:48
12-Mar-2024 09:35:48 CMake suite maintained and supported by Kitware (kitware.com/cmake).
12-Mar-2024 09:35:56 qtoption:
12-Mar-2024 09:35:56 Executing: docker exec casalith_container /bin/bash -c "useradd -u 9285 casaci"
12-Mar-2024 09:35:56 Executing: docker exec -u casaci casalith_container /bin/bash -c "python3.8 -m pip install --upgrade --user numpy"
12-Mar-2024 09:35:56 Collecting numpy
12-Mar-2024 09:35:56 Downloading numpy-1.24.4-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (17.3 MB)
12-Mar-2024 09:35:56 Installing collected packages: numpy
12-Mar-2024 09:35:56 WARNING: The scripts f2py, f2py3 and f2py3.8 are installed in '/home/casaci/.local/bin' which is not on PATH.
12-Mar-2024 09:35:56 Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
12-Mar-2024 09:35:56 Successfully installed numpy-1.24.4
12-Mar-2024 09:35:56 WARNING: You are using pip version 20.2.3; however, version 24.0 is available.
12-Mar-2024 09:35:56 You should consider upgrading via the '/usr/local/bin/python3.8 -m pip install --upgrade pip' command.
12-Mar-2024 09:35:56 Executing: docker exec -u casaci casalith_container /bin/bash -c "mkdir ~/.casa && mkdir -p ~/.config/pip"
12-Mar-2024 09:35:56 Executing: docker cp /export/home/cbt-el7-2/bamboohome/xml-data/build-dir/CASA-CRBC661-BPML2014S/source/casa-build-utils/cmakebuild/scripts/config/config.py casalith_container:/home/casaci/.casa/config.py
12-Mar-2024 09:35:56 Executing: docker cp /export/home/cbt-el7-2/bamboohome/xml-data/build-dir/CASA-CRBC661-BPML2014S/source/casa-build-utils/cmakebuild/scripts/config/pip.conf.cmake.manylinux.py38 casalith_container:/home/casaci/.config/pip/pip.conf
12-Mar-2024 09:35:56 Executing: docker cp /export/home/cbt-el7-2/bamboohome/xml-data/build-dir/CASA-CRBC661-BPML2014S/source/casa-build-utils/cmakebuild/scripts/build_casalith_cmake.sh casalith_container:/home/casaci/build_casalith_cmake
12-Mar-2024 09:35:56 Executing: docker exec -u casaci casalith_container /bin/bash -c "cd /home/casaci && ./build_casalith_cmake -r /source -p 3.8 -m ml2014 -b release/6.6.1"
12-Mar-2024 09:35:56 Set cache size limit to 50.0 GB
12-Mar-2024 09:35:56 <casa_cmake> pythonversion 3.8
12-Mar-2024 09:35:56 <casa_cmake> branch release/6.6.1
12-Mar-2024 09:35:56 <casa_cmake> Setting up ccache
12-Mar-2024 09:35:56 Set cache size limit to 50.0 GB
12-Mar-2024 09:35:56 <casa_cmake> buildtarget not set. Defaulting to Casalith build.
12-Mar-2024 09:35:56 build_casalith_cmake.sh qtversion:
12-Mar-2024 09:35:56 build_casalith_cmake.sh qtoption: -q
12-Mar-2024 09:35:56 Creating /source/casainstall
12-Mar-2024 09:35:56 Creating /source/work
12-Mar-2024 09:35:56 Downloading libsakura
12-Mar-2024 09:35:56 % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
12-Mar-2024 09:35:56 Dload  Upload   Total   Spent    Left  Speed
12-Mar-2024 09:35:56 0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
12-Mar-2024 09:35:56   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
12-Mar-2024 09:35:56   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/.github/
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/.github/workflows/
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/.github/workflows/cmake.yml
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/Makefile
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/bench/
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/bench/A/
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/bench/A/Makefile
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/bench/A/fetchAllPointing-sqlite.cc
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/bench/A/fetchAllPointing.cc
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/bench/A/insertToPointing-sqlite.cc
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/bench/A/insertToPointing.cc
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/bench/B/
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/bench/B/Makefile
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/bench/B/get-all-casa.cc
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/bench/B/get-all-sqlite.cc
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/bench/C/
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/bench/C/Makefile
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/bench/C/addcol-casa.cc
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/bench/D/
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/bench/D/Makefile
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/bench/D/select-get-casa.cc
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/bench/D/select-get-sqlite.cc
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/bench/E/
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/bench/E/Makefile
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/bench/E/select-update-casa.cc
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/bench/avg/
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/bench/avg/Makefile
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/bench/avg/average-ext.cc
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/bench/avg/average.cc
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/bench/e2eReduce/
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/bench/e2eReduce/.cproject
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/bench/e2eReduce/.project
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/bench/e2eReduce/.settings/
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/bench/e2eReduce/.settings/language.settings.xml
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/bench/e2eReduce/.settings/org.eclipse.cdt.codan.core.prefs
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/bench/e2eReduce/.settings/org.eclipse.cdt.core.prefs
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/bench/e2eReduce/CMakeLists.txt
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/bench/e2eReduce/cmake-modules/
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/bench/e2eReduce/cmake-modules/FindCasaCore.cmake
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/bench/e2eReduce/cmake-modules/FindLibSakura.cmake
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/bench/e2eReduce/cmake-modules/FindLog4CXX.cmake
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/bench/e2eReduce/cmake-modules/FindXDispatch.cmake
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/bench/e2eReduce/config.log4j
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/bench/e2eReduce/e2eana.config
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/bench/e2eReduce/e2etest.config
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/bench/e2eReduce/libsakura.log4j
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/bench/e2eReduce/src/
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/bench/e2eReduce/src/config_file_reader.h
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/bench/e2eReduce/src/context_handler.h
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/bench/e2eReduce/src/main.cc
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/bench/e2eReduce/src/option_parser.h
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/bench/e2eReduce/src/utils.h
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/c++/
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/c++/Doxyfile
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/c++/Makefile
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/c++/include/
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/c++/include/SQLite.h
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/c++/lib/
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/c++/lib/Makefile
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/c++/lib/SQLite.cc
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/c++/lib/libSQLiteMMapVTable.cc
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/c++/lib/sql-ext.cc
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/libsakura/
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/libsakura/.cproject
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/libsakura/.gitignore
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/libsakura/.project
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/libsakura/.settings/
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/libsakura/.settings/language.settings.xml
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/libsakura/.settings/org.eclipse.cdt.codan.core.prefs
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/libsakura/CMakeLists.txt
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/libsakura/COPYING
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/libsakura/COPYING.LESSER
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/libsakura/INSTALL.txt
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/libsakura/NOTICE
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/libsakura/bin/
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/libsakura/bin/fix-license.sh
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/libsakura/bin/multi-arch-build.sh
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/libsakura/bin/osx_python_to_casa.sh
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/libsakura/bin/package_release.sh
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/libsakura/cmake-modules/
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/libsakura/cmake-modules/FindEigen3.cmake
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/libsakura/cmake-modules/FindFFTW3.cmake
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/libsakura/cmake-modules/FindLog4Cxx.cmake
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/libsakura/cmake-modules/SetArchFlags.cmake
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/libsakura/doc/
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/libsakura/doc/images/
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/libsakura/doc/images/GetCoefficientsForLeastSquareFitting.png
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/libsakura/doc/images/InterpolateXAxisFloat.png
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/libsakura/doc/images/InterpolateYAxisFloat.png
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/libsakura/doc/mainpage.dox
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/libsakura/doc/misc/
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/libsakura/doc/misc/SakuraStatistics-algorithm.xlsx
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/libsakura/libsakura.pc.in
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/libsakura/python-binding/
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/libsakura/python-binding/CMakeLists.txt
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/libsakura/python-binding/Doxyfile.in
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12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/libsakura/python-binding/libsakura/config-python.h.in
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/libsakura/python-binding/libsakura/sakura-python.h
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/libsakura/python-binding/python-binding.cc
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/libsakura/python-binding/test.py
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/libsakura/python-binding/test.sh
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/libsakura/python-binding/test3.py
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/libsakura/src/
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/libsakura/src/CMakeLists.txt
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12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/libsakura/src/baseline.cc
12-Mar-2024 09:35:56 sakura-libsakura-5.1.3/libsakura/src/baseline.h
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12-Mar-2024 09:35:58 sakura-libsakura-5.1.3/libsakura/src/convolution.cc
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12-Mar-2024 09:35:58 sakura-libsakura-5.1.3/libsakura/src/gen_util.cc
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12-Mar-2024 09:35:58 sakura-libsakura-5.1.3/libsakura/src/libsakura/
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12-Mar-2024 09:35:58 sakura-libsakura-5.1.3/libsakura/src/libsakura/logger.h
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12-Mar-2024 09:35:58 sakura-libsakura-5.1.3/libsakura/src/libsakura/packed_operation.h
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12-Mar-2024 09:35:58 sakura-libsakura-5.1.3/libsakura/test/
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12-Mar-2024 09:35:58 sakura-libsakura-5.1.3/libsakura/test/asap/BisectionLocator.tcc
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12-Mar-2024 09:35:58 sakura-libsakura-5.1.3/libsakura/test/bench-interpolation-casacore.cc
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12-Mar-2024 09:35:58 sakura-libsakura-5.1.3/libsakura/test/c_interface.c
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12-Mar-2024 09:35:58 sakura-libsakura-5.1.3/libsakura/test/fft.cc
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12-Mar-2024 09:35:58 sakura-libsakura-5.1.3/libsakura/test/init.cc
12-Mar-2024 09:35:58 sakura-libsakura-5.1.3/libsakura/test/interpolation.h
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12-Mar-2024 09:35:58 sakura-libsakura-5.1.3/libsakura/test/libsakura.log4j
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12-Mar-2024 09:35:58 sakura-libsakura-5.1.3/libsakura/test/normalization.cc
12-Mar-2024 09:35:58 sakura-libsakura-5.1.3/libsakura/test/numeric_operation.cc
12-Mar-2024 09:35:58 sakura-libsakura-5.1.3/libsakura/test/statistics.cc
12-Mar-2024 09:35:58 sakura-libsakura-5.1.3/libsakura/test/testutil.cc
12-Mar-2024 09:35:58 sakura-libsakura-5.1.3/libsakura/test/testutil.h
12-Mar-2024 09:35:58 sakura-libsakura-5.1.3/sql/
12-Mar-2024 09:35:58 sakura-libsakura-5.1.3/sql/MS.erm
12-Mar-2024 09:35:58 sakura-libsakura-5.1.3/sql/MSM.ddl
12-Mar-2024 09:35:58 sakura-libsakura-5.1.3/sql/MST.ddl
12-Mar-2024 09:35:58 sakura-libsakura-5.1.3/sql/Makefile
12-Mar-2024 09:35:58 sakura-libsakura-5.1.3/sql/fix.sed
12-Mar-2024 09:35:58 sakura-libsakura-5.1.3/sql/sep.sh
12-Mar-2024 09:35:58 sakura-libsakura-5.1.3/tools/
12-Mar-2024 09:35:58 sakura-libsakura-5.1.3/tools/converter/
12-Mar-2024 09:35:58 sakura-libsakura-5.1.3/tools/converter/msconverter/
12-Mar-2024 09:35:58 sakura-libsakura-5.1.3/tools/converter/msconverter/Makefile
12-Mar-2024 09:35:58 sakura-libsakura-5.1.3/tools/converter/msconverter/msconverter.cc
12-Mar-2024 09:35:58 sakura-libsakura-5.1.3/tools/converter/msconverter/test.sql
12-Mar-2024 09:35:58 Configuring libsakura
12-Mar-2024 09:35:58 CMake Deprecation Warning at CMakeLists.txt:24 (cmake_minimum_required):
12-Mar-2024 09:35:58 Compatibility with CMake < 2.8.12 will be removed from a future version of
12-Mar-2024 09:35:58 CMake.
12-Mar-2024 09:35:58
12-Mar-2024 09:36:01 Update the VERSION argument <min> value or use a ...<max> suffix to tell
12-Mar-2024 09:36:01 CMake that the project does not need compatibility with older versions.
12-Mar-2024 09:36:01
12-Mar-2024 09:36:01
12-Mar-2024 09:36:01 -- The C compiler identification is GNU 10.2.1
12-Mar-2024 09:36:01 -- The CXX compiler identification is GNU 10.2.1
12-Mar-2024 09:36:01 -- Detecting C compiler ABI info
12-Mar-2024 09:36:01 -- Detecting C compiler ABI info - done
12-Mar-2024 09:36:01 -- Check for working C compiler: /usr/lib64/ccache/cc - skipped
12-Mar-2024 09:36:01 -- Detecting C compile features
12-Mar-2024 09:36:01 -- Detecting C compile features - done
12-Mar-2024 09:36:01 -- Detecting CXX compiler ABI info
12-Mar-2024 09:36:01 -- Detecting CXX compiler ABI info - done
12-Mar-2024 09:36:01 -- Check for working CXX compiler: /usr/lib64/ccache/c++ - skipped
12-Mar-2024 09:36:01 -- Detecting CXX compile features
12-Mar-2024 09:36:01 -- Detecting CXX compile features - done
12-Mar-2024 09:36:01 -- CMAKE_CXX_FLAGS= -std=c++11
12-Mar-2024 09:36:01 CMake Deprecation Warning at src/CMakeLists.txt:24 (cmake_minimum_required):
12-Mar-2024 09:36:01 Compatibility with CMake < 2.8.12 will be removed from a future version of
12-Mar-2024 09:36:01 CMake.
12-Mar-2024 09:36:01
12-Mar-2024 09:36:01 Update the VERSION argument <min> value or use a ...<max> suffix to tell
12-Mar-2024 09:36:01 CMake that the project does not need compatibility with older versions.
12-Mar-2024 09:36:01
12-Mar-2024 09:36:01
12-Mar-2024 09:36:01 CMake Warning (dev) at src/CMakeLists.txt:26 (project):
12-Mar-2024 09:36:01 Policy CMP0048 is not set: project() command manages VERSION variables.
12-Mar-2024 09:36:01 Run "cmake --help-policy CMP0048" for policy details.  Use the cmake_policy
12-Mar-2024 09:36:01 command to set the policy and suppress this warning.
12-Mar-2024 09:36:01
12-Mar-2024 09:36:01 The following variable(s) would be set to empty:
12-Mar-2024 09:36:01
12-Mar-2024 09:36:01 libsakura_VERSION_MAJOR
12-Mar-2024 09:36:01 libsakura_VERSION_MINOR
12-Mar-2024 09:36:01 This warning is for project developers.  Use -Wno-dev to suppress it.
12-Mar-2024 09:36:01
12-Mar-2024 09:36:01 -- Looking for pthread.h
12-Mar-2024 09:36:01 -- Looking for pthread.h - found
12-Mar-2024 09:36:01 -- Performing Test CMAKE_HAVE_LIBC_PTHREAD
12-Mar-2024 09:36:01 -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
12-Mar-2024 09:36:01 -- Looking for pthread_create in pthreads
12-Mar-2024 09:36:01 -- Looking for pthread_create in pthreads - not found
12-Mar-2024 09:36:01 -- Looking for pthread_create in pthread
12-Mar-2024 09:36:01 -- Looking for pthread_create in pthread - found
12-Mar-2024 09:36:01 -- Found Threads: TRUE
12-Mar-2024 09:36:01 CMake Warning (dev) at /opt/_internal/pipx/venvs/cmake/lib/python3.9/site-packages/cmake/data/share/cmake-3.22/Modules/FindPackageHandleStandardArgs.cmake:438 (message):
12-Mar-2024 09:36:01 The package name passed to `find_package_handle_standard_args` (EIGEN3)
12-Mar-2024 09:36:01 does not match the name of the calling package (Eigen3).  This can lead to
12-Mar-2024 09:36:01 problems in calling code that expects `find_package` result variables
12-Mar-2024 09:36:01 (e.g., `_FOUND`) to follow a certain pattern.
12-Mar-2024 09:36:01 Call Stack (most recent call first):
12-Mar-2024 09:36:01 cmake-modules/FindEigen3.cmake:16 (find_package_handle_standard_args)
12-Mar-2024 09:36:01 src/CMakeLists.txt:29 (find_package)
12-Mar-2024 09:36:01 This warning is for project developers.  Use -Wno-dev to suppress it.
12-Mar-2024 09:36:01
12-Mar-2024 09:36:01 -- Found EIGEN3: /usr/include/eigen3 (found version "3.3.7")
12-Mar-2024 09:36:01 CMake Warning (dev) at /opt/_internal/pipx/venvs/cmake/lib/python3.9/site-packages/cmake/data/share/cmake-3.22/Modules/FindPackageHandleStandardArgs.cmake:438 (message):
12-Mar-2024 09:36:01 The package name passed to `find_package_handle_standard_args` (LOG4CXX)
12-Mar-2024 09:36:01 does not match the name of the calling package (Log4Cxx).  This can lead to
12-Mar-2024 09:36:01 problems in calling code that expects `find_package` result variables
12-Mar-2024 09:36:01 (e.g., `_FOUND`) to follow a certain pattern.
12-Mar-2024 09:36:01 Call Stack (most recent call first):
12-Mar-2024 09:36:01 cmake-modules/FindLog4Cxx.cmake:5 (FIND_PACKAGE_HANDLE_STANDARD_ARGS)
12-Mar-2024 09:36:01 src/CMakeLists.txt:30 (find_package)
12-Mar-2024 09:36:01 This warning is for project developers.  Use -Wno-dev to suppress it.
12-Mar-2024 09:36:01
12-Mar-2024 09:36:01 -- Could NOT find LOG4CXX (missing: LOG4CXX_LIBRARY LOG4CXX_INCLUDE_DIR)
12-Mar-2024 09:36:01 -- FFTW3_ROOT_DIR=
12-Mar-2024 09:36:01 -- FFTW3_INCLUDE_DIR=/usr/include
12-Mar-2024 09:36:01 -- Found FFTW3: /usr/lib64/libfftw3.so (Required is at least version "3.3.2")
12-Mar-2024 09:36:01 CMAKE_BUILD_TYPE is RelWithDebInfo
12-Mar-2024 09:36:01 CMAKE_CXX_COMPILER_ID is GNU
12-Mar-2024 09:36:01 SIMD_ARCH is GENERIC
12-Mar-2024 09:36:01 CMAKE_CXX_FLAGS is -I/source/work/sakura-libsakura-5.1.3/libsakura/build/bin -I/source/work/sakura-libsakura-5.1.3/libsakura/src  -std=c++11 -I/usr/include/eigen3 -I/usr/include -m64 -Wall -Wno-deprecated-register -fPIC -pipe
12-Mar-2024 09:36:01 default CMAKE_CXX_FLAGS_RELEASE is -O3 -DNDEBUG
12-Mar-2024 09:36:01 default CMAKE_CXX_FLAGS_DEBUG is -g
12-Mar-2024 09:36:01 CMAKE_CXX_FLAGS_RELEASE was set to -funroll-all-loops -O3 -DNDEBUG
12-Mar-2024 09:36:01 -- Configuring done
12-Mar-2024 09:36:01 -- Generating done
12-Mar-2024 09:36:01 -- Build files have been written to: /source/work/sakura-libsakura-5.1.3/libsakura/build
12-Mar-2024 09:36:01 Building and installing libsakura
12-Mar-2024 09:36:01 [  7%] Building CXX object bin/CMakeFiles/sakura.dir/baseline.cc.o
12-Mar-2024 09:37:05 [ 14%] Building CXX object bin/CMakeFiles/sakura.dir/bool_filter_collection.cc.o
12-Mar-2024 09:37:05 [ 21%] Building CXX object bin/CMakeFiles/sakura.dir/bit_operation.cc.o
12-Mar-2024 09:37:05 [ 28%] Building CXX object bin/CMakeFiles/sakura.dir/convolution.cc.o
12-Mar-2024 09:37:05 [ 35%] Building CXX object bin/CMakeFiles/sakura.dir/gridding.cc.o
12-Mar-2024 09:37:05 [ 42%] Building CXX object bin/CMakeFiles/sakura.dir/interpolation.cc.o
12-Mar-2024 09:37:05 [ 50%] Building CXX object bin/CMakeFiles/sakura.dir/normalization.cc.o
12-Mar-2024 09:37:05 [ 57%] Building CXX object bin/CMakeFiles/sakura.dir/numeric_operation.cc.o
12-Mar-2024 09:37:05 [ 64%] Building CXX object bin/CMakeFiles/sakura.dir/statistics.cc.o
12-Mar-2024 09:37:05 [ 71%] Building CXX object bin/CMakeFiles/sakura.dir/fft.cc.o
12-Mar-2024 09:37:05 [ 78%] Building CXX object bin/CMakeFiles/sakura.dir/gen_util.cc.o
12-Mar-2024 09:37:05 [ 85%] Building CXX object bin/CMakeFiles/sakura.dir/concurrent.cc.o
12-Mar-2024 09:37:05 [ 92%] Building CXX object bin/CMakeFiles/sakura.dir/mask_edge.cc.o
12-Mar-2024 09:37:05 [100%] Linking CXX shared library libsakura.so
12-Mar-2024 09:37:05 [100%] Built target sakura
12-Mar-2024 09:37:05 Install the project...
12-Mar-2024 09:37:05 -- Install configuration: "RelWithDebInfo"
12-Mar-2024 09:37:05 -- Installing: /source/casainstall/lib/pkgconfig/libsakura.pc
12-Mar-2024 09:37:05 -- Installing: /source/casainstall/lib/libsakura.so.5.1
12-Mar-2024 09:37:05 -- Installing: /source/casainstall/lib/libsakura.so.5
12-Mar-2024 09:37:05 -- Installing: /source/casainstall/lib/libsakura.so
12-Mar-2024 09:37:05 -- Installing: /source/casainstall/include/libsakura/sakura.h
12-Mar-2024 09:37:05 -- Installing: /source/casainstall/include/libsakura/config.h
12-Mar-2024 09:37:05 Installing data
12-Mar-2024 09:37:05 % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
12-Mar-2024 09:37:05 Dload  Upload   Total   Spent    Left  Speed
12-Mar-2024 09:37:05 0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
12-Mar-2024 09:37:05   0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
12-Mar-2024 09:37:05   2 19.5M    2  415k    0     0   213k      0  0:01:33  0:00:01  0:01:32  213k
12-Mar-2024 09:37:05   7 19.5M    7 1448k    0     0   490k      0  0:00:40  0:00:02  0:00:38  490k
12-Mar-2024 09:37:05 13 19.5M   13 2639k    0     0   667k      0  0:00:29  0:00:03  0:00:26  667k
12-Mar-2024 09:37:05 19 19.5M   19 3873k    0     0   780k      0  0:00:25  0:00:04  0:00:21  781k
12-Mar-2024 09:37:05 25 19.5M   25 5090k    0     0   858k      0  0:00:23  0:00:05  0:00:18 1019k
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12-Mar-2024 09:37:05 71 19.5M   71 13.9M    0     0  1189k      0  0:00:16  0:00:12  0:00:04 1551k
12-Mar-2024 09:37:05 78 19.5M   78 15.2M    0     0  1207k      0  0:00:16  0:00:12  0:00:04 1568k
12-Mar-2024 09:37:05 84 19.5M   84 16.5M    0     0  1218k      0  0:00:16  0:00:13  0:00:03 1550k
12-Mar-2024 09:37:05 92 19.5M   92 18.0M    0     0  1235k      0  0:00:16  0:00:14  0:00:02 1539k
12-Mar-2024 09:37:05 99 19.5M   99 19.4M    0     0  1249k      0  0:00:16  0:00:15  0:00:01 1462k
12-Mar-2024 09:37:05 100 19.5M  100 19.5M    0     0  1244k      0  0:00:16  0:00:16 --:--:-- 1408k
12-Mar-2024 09:37:05 Building casacore
12-Mar-2024 09:37:05 -- The C compiler identification is GNU 10.2.1
12-Mar-2024 09:37:05 -- The CXX compiler identification is GNU 10.2.1
12-Mar-2024 09:37:05 -- Detecting C compiler ABI info
12-Mar-2024 09:37:05 -- Detecting C compiler ABI info - done
12-Mar-2024 09:37:05 -- Check for working C compiler: /usr/lib64/ccache/cc - skipped
12-Mar-2024 09:37:05 -- Detecting C compile features
12-Mar-2024 09:37:05 -- Detecting C compile features - done
12-Mar-2024 09:37:05 -- Detecting CXX compiler ABI info
12-Mar-2024 09:37:05 -- Detecting CXX compiler ABI info - done
12-Mar-2024 09:37:05 -- Check for working CXX compiler: /usr/lib64/ccache/c++ - skipped
12-Mar-2024 09:37:05 -- Detecting CXX compile features
12-Mar-2024 09:37:05 -- Detecting CXX compile features - done
12-Mar-2024 09:37:05 -- Performing Test HAVE_O_DIRECT
12-Mar-2024 09:37:05 -- Performing Test HAVE_O_DIRECT - Success
12-Mar-2024 09:37:05 -- Searching for ccache.
12-Mar-2024 09:37:05 -- Ccache found.
12-Mar-2024 09:37:05 -- Using namespace casacore.
12-Mar-2024 09:37:05 -- Performing Test HAS_CXX11
12-Mar-2024 09:37:05 -- Performing Test HAS_CXX11 - Success
12-Mar-2024 09:37:05 -- Looking for pread
12-Mar-2024 09:37:05 -- Looking for pread - found
12-Mar-2024 09:37:05 -- Looking for pwrite
12-Mar-2024 09:37:05 -- Looking for pwrite - found
12-Mar-2024 09:37:05 -- The Fortran compiler identification is GNU 10.2.1
12-Mar-2024 09:37:05 -- Detecting Fortran compiler ABI info
12-Mar-2024 09:37:05 -- Detecting Fortran compiler ABI info - done
12-Mar-2024 09:37:05 -- Check for working Fortran compiler: /opt/rh/devtoolset-10/root/usr/bin/gfortran - skipped
12-Mar-2024 09:37:05 -- Performing Test HAS_GXX_FORTRAN_RULES
12-Mar-2024 09:37:05 -- Performing Test HAS_GXX_FORTRAN_RULES - Success
12-Mar-2024 09:37:05 -- Performing Test HAS_GCC_FORTRAN_RULES
12-Mar-2024 09:37:13 -- Performing Test HAS_GCC_FORTRAN_RULES - Success
12-Mar-2024 09:37:13 -- Found Readline: /usr/lib64/libreadline.so
12-Mar-2024 09:37:13 -- Could NOT find SOFA (missing: SOFA_LIBRARY)
12-Mar-2024 09:37:13 -- Found FLEX: /usr/bin/flex
12-Mar-2024 09:37:13 -- Found BISON: /usr/bin/bison
12-Mar-2024 09:37:13 -- Looking for Fortran sgemm
12-Mar-2024 09:37:13 -- Looking for Fortran sgemm - not found
12-Mar-2024 09:37:13 -- Looking for pthread.h
12-Mar-2024 09:37:13 -- Looking for pthread.h - found
12-Mar-2024 09:37:13 -- Performing Test CMAKE_HAVE_LIBC_PTHREAD
12-Mar-2024 09:37:13 -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
12-Mar-2024 09:37:13 -- Looking for pthread_create in pthreads
12-Mar-2024 09:37:13 -- Looking for pthread_create in pthreads - not found
12-Mar-2024 09:37:13 -- Looking for pthread_create in pthread
12-Mar-2024 09:37:13 -- Looking for pthread_create in pthread - found
12-Mar-2024 09:37:13 -- Found Threads: TRUE
12-Mar-2024 09:37:13 -- Looking for Fortran sgemm
12-Mar-2024 09:37:13 -- Looking for Fortran sgemm - found
12-Mar-2024 09:37:13 -- Found BLAS: /usr/lib64/libblas.so
12-Mar-2024 09:37:13 -- Looking for Fortran cheev
12-Mar-2024 09:37:13 -- Looking for Fortran cheev - not found
12-Mar-2024 09:37:13 -- Looking for Fortran cheev
12-Mar-2024 09:37:13 -- Looking for Fortran cheev - not found
12-Mar-2024 09:37:13 -- Looking for Fortran cheev
12-Mar-2024 09:37:13 -- Looking for Fortran cheev - found
12-Mar-2024 09:37:13 -- Found LAPACK: /usr/lib64/liblapack.so;/usr/lib64/libblas.so
12-Mar-2024 09:37:13 -- Found FFTW3: /usr/lib64/libfftw3f_threads.so
12-Mar-2024 09:37:13 -- Found CFITSIO: /usr/lib64/libcfitsio.so (found suitable version "3.370", minimum required is "3.030")
12-Mar-2024 09:37:13 -- Found WCSLIB: /usr/lib64/libwcs.so (found suitable version "4.25", minimum required is "4.7")
12-Mar-2024 09:37:13 -- Found OpenMP_C: -fopenmp (found version "4.5")
12-Mar-2024 09:37:13 -- Found OpenMP_CXX: -fopenmp (found version "4.5")
12-Mar-2024 09:37:13 -- Found OpenMP_Fortran: -fopenmp (found version "4.5")
12-Mar-2024 09:37:13 -- Found OpenMP: TRUE (found version "4.5")
12-Mar-2024 09:37:13 -- Found Pthreads: /usr/lib64/libpthread.so
12-Mar-2024 09:37:13 -- Could NOT find Boost (missing: Boost_INCLUDE_DIR filesystem unit_test_framework system)
12-Mar-2024 09:37:13 -- Could NOT find Boost (missing: Boost_INCLUDE_DIR system filesystem unit_test_framework)
12-Mar-2024 09:37:13 Boost testing framework not found.
12-Mar-2024 09:37:13 -- Performing Test FORTRAN_HAS_ALLOW_ARGUMENT_MISMATCH
12-Mar-2024 09:37:13 -- Performing Test FORTRAN_HAS_ALLOW_ARGUMENT_MISMATCH - Success
12-Mar-2024 09:37:13 -- CMAKE_SYSTEM .......... = Linux-3.10.0-1160.99.1.el7.x86_64
12-Mar-2024 09:37:13 -- CMAKE_BUILD_TYPE ...... = Release
12-Mar-2024 09:37:13 -- Modules to be built ... = casa;tables;scimath_f;scimath;measures;meas;fits;ms;msfits;derivedmscal;lattices;mirlib;coordinates;images
12-Mar-2024 09:37:13 -- BUILD_SHARED_LIBS ..... = ON
12-Mar-2024 09:37:13 -- ENABLE_RPATH .......... = ON
12-Mar-2024 09:37:13 -- CMAKE_INSTALL_NAME_DIR  = /source/casainstall/lib
12-Mar-2024 09:37:13 -- ENABLE_TABLELOCKING ... = ON
12-Mar-2024 09:37:13 -- USE_PCH ............... = OFF
12-Mar-2024 09:37:13 -- USE_THREADS ........... = YES
12-Mar-2024 09:37:13 -- USE_OPENMP ............ = ON
12-Mar-2024 09:37:13 -- USE_MPI ............... = OFF
12-Mar-2024 09:37:13 -- USE_STACKTRACE ........ = OFF
12-Mar-2024 09:37:13 -- HAVE_O_DIRECT ......... = 1
12-Mar-2024 09:37:13 -- CMAKE_CXX_COMPILER .... = /usr/lib64/ccache/c++
12-Mar-2024 09:37:13 -- CMAKE_CXX_FLAGS ....... = -fcx-fortran-rules -I /opt/casa/03/include -L /opt/casa/03/lib/ -lgsl -lgslcblas -std=c++11 -fopenmp -pthread
12-Mar-2024 09:37:13 -- DATA directory ........ = /source/casainstall/data
12-Mar-2024 09:37:13 -- DL library? ........... = /usr/lib64/libdl.so
12-Mar-2024 09:37:13 -- Pthreads library? ..... = /usr/lib64/libpthread.so
12-Mar-2024 09:37:13 -- Readline library? ..... = /usr/lib64/libreadline.so;/usr/lib64/libncurses.so
12-Mar-2024 09:37:13 -- BLAS library? ......... = /usr/lib64/libblas.so
12-Mar-2024 09:37:13 -- LAPACK library? ....... = /usr/lib64/liblapack.so;/usr/lib64/libblas.so
12-Mar-2024 09:37:13 -- WCS library? .......... = /usr/lib64/libwcs.so;/usr/lib64/libm.so
12-Mar-2024 09:37:13 -- SOFA library? ......... = SOFA_LIBRARY-NOTFOUND
12-Mar-2024 09:37:13 -- CFitsio library? ...... = /usr/lib64/libcfitsio.so;/usr/lib64/libm.so
12-Mar-2024 09:37:13 -- ADIOS2 library? ....... =
12-Mar-2024 09:37:13 -- HDF5 library? ......... =
12-Mar-2024 09:37:13 -- FFTW3 library? ........ = /usr/lib64/libfftw3f_threads.so;/usr/lib64/libfftw3_threads.so;/usr/lib64/libfftw3f.so;/usr/lib64/libfftw3.so
12-Mar-2024 09:37:13 -- BUILD_FFTPACK_DEPRECATED= ON
12-Mar-2024 09:37:13 -- BUILD_DEPRECATED ...... = OFF
12-Mar-2024 09:37:13 -- BUILD_DYSCO ........... = ON
12-Mar-2024 09:37:13 -- BUILD_PYTHON .......... = OFF
12-Mar-2024 09:37:13 -- BUILD_PYTHON3 ......... = OFF
12-Mar-2024 09:37:13 -- Configuring done
12-Mar-2024 09:37:13 -- Generating done
12-Mar-2024 09:37:13 CMake Warning:
12-Mar-2024 09:37:13 Manually-specified variables were not used by the project:
12-Mar-2024 09:37:13
12-Mar-2024 09:37:13 GSL_CBLAS_LIBRARY
12-Mar-2024 09:37:13 GSL_LIBRARY
12-Mar-2024 09:37:13
12-Mar-2024 09:37:13
12-Mar-2024 09:37:13 -- Build files have been written to: /source/casa6/casatools/casacore/build
12-Mar-2024 09:37:13 [  0%] [FLEX][JsonGram] Building scanner with flex 2.5.37
12-Mar-2024 09:37:13 [  0%] [BISON][JsonGram] Building parser with bison 3.0.4
12-Mar-2024 09:37:13 [  0%] Building CXX object tables/Dysco/CMakeFiles/dyscostman-object.dir/aftimeblockencoder.cc.o
12-Mar-2024 09:37:13 [  0%] Building CXX object tables/Dysco/CMakeFiles/dyscostman-object.dir/dyscostman.cc.o
12-Mar-2024 09:37:39 [  1%] Building CXX object tables/Dysco/CMakeFiles/dyscostman-object.dir/dyscodatacolumn.cc.o
12-Mar-2024 09:37:39 [  1%] Building CXX object tables/Dysco/CMakeFiles/dyscostman-object.dir/dyscoweightcolumn.cc.o
12-Mar-2024 09:37:39 [  1%] Building CXX object tables/Dysco/CMakeFiles/dyscostman-object.dir/stochasticencoder.cc.o
12-Mar-2024 09:37:39 [  1%] Building CXX object tables/Dysco/CMakeFiles/dyscostman-object.dir/threadeddyscocolumn.cc.o
12-Mar-2024 09:37:39 [  1%] Building CXX object tables/Dysco/CMakeFiles/dyscostman-object.dir/rftimeblockencoder.cc.o
12-Mar-2024 09:37:39 [  1%] Building CXX object casa/CMakeFiles/casa_casa.dir/Arrays/ArrayBase.cc.o
12-Mar-2024 09:37:39 [  1%] Building CXX object tables/Dysco/CMakeFiles/dyscostman-object.dir/rowtimeblockencoder.cc.o
12-Mar-2024 09:37:39 [  1%] Building CXX object casa/CMakeFiles/casa_casa.dir/Arrays/ArrayError.cc.o
12-Mar-2024 09:37:39 [  1%] Building CXX object casa/CMakeFiles/casa_casa.dir/Arrays/ArrayOpsDiffShapes.cc.o
12-Mar-2024 09:37:39 [  1%] Building CXX object casa/CMakeFiles/casa_casa.dir/Arrays/ArrayPartMath.cc.o
12-Mar-2024 09:37:39 [  1%] Building CXX object casa/CMakeFiles/casa_casa.dir/Arrays/ArrayPosIter.cc.o
12-Mar-2024 09:37:39 [  1%] Building CXX object casa/CMakeFiles/casa_casa.dir/Arrays/ArrayUtil2.cc.o
12-Mar-2024 09:37:39 [  1%] Building CXX object casa/CMakeFiles/casa_casa.dir/Arrays/Array2.cc.o
12-Mar-2024 09:37:39 [  1%] Building CXX object casa/CMakeFiles/casa_casa.dir/Arrays/Array2Math.cc.o
12-Mar-2024 09:37:39 [  1%] Building CXX object casa/CMakeFiles/casa_casa.dir/Arrays/Array_tmpl.cc.o
12-Mar-2024 09:37:39 [  1%] Building CXX object casa/CMakeFiles/casa_casa.dir/Arrays/AxesMapping.cc.o
12-Mar-2024 09:37:39 [  1%] Building CXX object casa/CMakeFiles/casa_casa.dir/Arrays/AxesSpecifier.cc.o
12-Mar-2024 09:37:39 [  1%] Building CXX object casa/CMakeFiles/casa_casa.dir/Arrays/ExtendSpecifier.cc.o
12-Mar-2024 09:37:39 [  1%] Building CXX object casa/CMakeFiles/casa_casa.dir/Arrays/IPosition.cc.o
12-Mar-2024 09:37:39 [  1%] Building CXX object casa/CMakeFiles/casa_casa.dir/Arrays/MaskArrMath2.cc.o
12-Mar-2024 09:37:39 [  2%] Building CXX object casa/CMakeFiles/casa_casa.dir/Arrays/Matrix2Math.cc.o
12-Mar-2024 09:37:39 [  2%] Building CXX object casa/CMakeFiles/casa_casa.dir/Arrays/Matrix_tmpl.cc.o
12-Mar-2024 09:37:39 [  2%] Built target dyscostman-object
12-Mar-2024 09:37:39 [  2%] Building CXX object casa/CMakeFiles/casa_casa.dir/Arrays/Slice.cc.o
12-Mar-2024 09:37:39 [  2%] Building CXX object casa/CMakeFiles/casa_casa.dir/Arrays/Slicer.cc.o
12-Mar-2024 09:37:39 [  2%] Building CXX object casa/CMakeFiles/casa_casa.dir/Arrays/Vector_tmpl.cc.o
12-Mar-2024 09:37:39 [  2%] Building CXX object casa/CMakeFiles/casa_casa.dir/BasicMath/Math.cc.o
12-Mar-2024 09:37:39 [  2%] Building CXX object casa/CMakeFiles/casa_casa.dir/BasicMath/Primes.cc.o
12-Mar-2024 09:37:39 [  2%] Building CXX object casa/CMakeFiles/casa_casa.dir/BasicMath/Random.cc.o
12-Mar-2024 09:37:39 [  2%] Building CXX object casa/CMakeFiles/casa_casa.dir/BasicSL/Complex.cc.o
12-Mar-2024 09:37:39 [  2%] Building CXX object casa/CMakeFiles/casa_casa.dir/BasicSL/Constants.cc.o
12-Mar-2024 09:37:39 [  2%] Building CXX object casa/CMakeFiles/casa_casa.dir/BasicSL/IComplex.cc.o
12-Mar-2024 09:37:39 [  2%] Building CXX object casa/CMakeFiles/casa_casa.dir/BasicSL/STLMath.cc.o
12-Mar-2024 09:37:39 [  2%] Building CXX object casa/CMakeFiles/casa_casa.dir/BasicSL/String.cc.o
12-Mar-2024 09:37:39 [  2%] Building CXX object casa/CMakeFiles/casa_casa.dir/Containers/Allocator.cc.o
12-Mar-2024 09:37:39 [  2%] Building CXX object casa/CMakeFiles/casa_casa.dir/Containers/Block.cc.o
12-Mar-2024 09:37:39 [  2%] Building CXX object casa/CMakeFiles/casa_casa.dir/Containers/Block_tmpl.cc.o
12-Mar-2024 09:37:39 [  2%] Building CXX object casa/CMakeFiles/casa_casa.dir/Containers/IterError.cc.o
12-Mar-2024 09:37:39 [  2%] Building CXX object casa/CMakeFiles/casa_casa.dir/Containers/Record.cc.o
12-Mar-2024 09:37:39 [  3%] Building CXX object casa/CMakeFiles/casa_casa.dir/Containers/RecordDesc.cc.o
12-Mar-2024 09:37:39 [  3%] Building CXX object casa/CMakeFiles/casa_casa.dir/Containers/RecordDescRep.cc.o
12-Mar-2024 09:37:39 [  3%] Building CXX object casa/CMakeFiles/casa_casa.dir/Containers/RecordFieldId.cc.o
12-Mar-2024 09:37:39 [  3%] Building CXX object casa/CMakeFiles/casa_casa.dir/Containers/RecordField2Writer.cc.o
12-Mar-2024 09:37:39 [  3%] Building CXX object casa/CMakeFiles/casa_casa.dir/Containers/RecordInterface.cc.o
12-Mar-2024 09:37:39 [  3%] Building CXX object casa/CMakeFiles/casa_casa.dir/Containers/RecordRep.cc.o
12-Mar-2024 09:37:39 [  3%] Building CXX object casa/CMakeFiles/casa_casa.dir/Containers/Record2.cc.o
12-Mar-2024 09:37:39 [  3%] Building CXX object casa/CMakeFiles/casa_casa.dir/Containers/Record2Interface.cc.o
12-Mar-2024 09:37:39 [  3%] Building CXX object casa/CMakeFiles/casa_casa.dir/Containers/ValueHolder.cc.o
12-Mar-2024 09:37:39 [  3%] Building CXX object casa/CMakeFiles/casa_casa.dir/Containers/ValueHolderRep.cc.o
12-Mar-2024 09:37:39 [  3%] Building CXX object casa/CMakeFiles/casa_casa.dir/Exceptions/Error2.cc.o
12-Mar-2024 09:37:40 Failing task since return code of [/export/home/cbt-el7-2/bamboohome/temp/CASA-CRBC661-BPML2014S-13-ScriptBuildTask-3025930825307495635.sh] was 143 while expected 0
12-Mar-2024 09:37:40 Finished task 'Create casalith' with result: Failed
12-Mar-2024 09:37:40 Starting task 'Clean up' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script'
12-Mar-2024 09:37:40
Beginning to execute external process for build 'CASA - CMake Release Build Casalith 6.6+ - release-6.6.1 - Build and Package Many Linux 2014 #13 (CASA-CRBC661-BPML2014S-13)'
... running command line:
/export/home/cbt-el7-2/bamboohome/temp/CASA-CRBC661-BPML2014S-13-ScriptBuildTask-8987416350747679379.sh
... in: /export/home/cbt-el7-2/bamboohome/xml-data/build-dir/CASA-CRBC661-BPML2014S
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bamboo_repository_92209154_revision_number=0f5f5457976fc70d8bb77e9995e1e54c4b6ad40d
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12-Mar-2024 09:37:40 Starting cleanup
12-Mar-2024 09:37:40 Force Stop build feature is enabled for current plan. Either Bamboo has detected the build has hung or it has been manually stopped.
12-Mar-2024 09:37:40 Attempting to generate stack trace and terminate spawned sub-processes of process id: 10931
12-Mar-2024 09:37:40 Error response from daemon: No such container: build_container
12-Mar-2024 09:37:40 Found related process: pid: 24293 ppid: 10931 pgid: 9122 %cpu: 0.0 %mem: 0.0 cmd: /bin/sh
12-Mar-2024 09:37:40 Found related process: pid: 22932 ppid: 1 pgid: 9122 %cpu: 0.1 %mem: 0.0 cmd: python
12-Mar-2024 09:37:40 getStackTraceAndKillRelatedProcesses for 2 processes
12-Mar-2024 09:37:40 Executing kill -3 22932
12-Mar-2024 09:37:40 Executing kill -3 24293
12-Mar-2024 09:37:45 Killing: 22932
12-Mar-2024 09:37:45 Executing kill 22932
12-Mar-2024 09:37:45 Killing: 24293
12-Mar-2024 09:37:45 Executing kill 24293
12-Mar-2024 09:37:45 [  3%] Building CXX object casa/CMakeFiles/casa_cas
12-Mar-2024 09:37:50 Force Stop build feature is enabled for current plan. Either Bamboo has detected the build has hung or it has been manually stopped.
12-Mar-2024 09:37:50 Has finished generating stack trace and terminating spawned sub-processes of process id: 10931
12-Mar-2024 09:37:50 Failing task since return code of [/export/home/cbt-el7-2/bamboohome/temp/CASA-CRBC661-BPML2014S-13-ScriptBuildTask-8987416350747679379.sh] was 143 while expected 0
12-Mar-2024 09:37:50 Finished task 'Clean up' with result: Failed
12-Mar-2024 09:37:50 Running post build plugin 'Docker Container Cleanup'
12-Mar-2024 09:37:50
Beginning to execute external process for build 'CASA - CMake Release Build Casalith 6.6+ - release-6.6.1 - Build and Package Many Linux 2014 #13 (CASA-CRBC661-BPML2014S-13)'
... running command line:
/bin/docker rm -f casalith_container
... in: /export/home/cbt-el7-2/bamboohome/xml-data/build-dir/CASA-CRBC661-BPML2014S
12-Mar-2024 09:37:51 casalith_container
12-Mar-2024 09:37:51 Running post build plugin 'NCover Results Collector'
12-Mar-2024 09:37:51 Running post build plugin 'Build Results Label Collector'
12-Mar-2024 09:37:51 Running post build plugin 'Clover Results Collector'
12-Mar-2024 09:37:51 Running post build plugin 'npm Cache Cleanup'
12-Mar-2024 09:37:51 Running post build plugin 'Artifact Copier'
12-Mar-2024 09:37:51 Publishing an artifact: Sys GRPC ManyLinux2014 Python 3.8 Tool wheel
12-Mar-2024 09:37:51 Failing as no matching files has been found and empty artifacts are not allowed.
12-Mar-2024 09:37:51 Unable to publish artifact [Sys GRPC ManyLinux2014 Python 3.8 Tool wheel]:
12-Mar-2024 09:37:51 The artifact is required, build will now fail.
12-Mar-2024 09:37:51 The artifact hasn't been successfully published after 64.88 ms
12-Mar-2024 09:37:51 Publishing an artifact: Sys GRPC  ManyLinux2014 Python 3.8 Task wheel
12-Mar-2024 09:37:52 Failing as no matching files has been found and empty artifacts are not allowed.
12-Mar-2024 09:37:52 Unable to publish artifact [Sys GRPC  ManyLinux2014 Python 3.8 Task wheel]:
12-Mar-2024 09:37:52 The artifact is required, build will now fail.
12-Mar-2024 09:37:52 The artifact hasn't been successfully published after 16.52 ms
12-Mar-2024 09:37:52 Publishing an artifact: Sys GRPC  ManyLinux2014 Python 3.8 Shell wheel
12-Mar-2024 09:37:52 Failing as no matching files has been found and empty artifacts are not allowed.
12-Mar-2024 09:37:52 Unable to publish artifact [Sys GRPC  ManyLinux2014 Python 3.8 Shell wheel]:
12-Mar-2024 09:37:52 The artifact is required, build will now fail.
12-Mar-2024 09:37:52 The artifact hasn't been successfully published after 39.13 ms
12-Mar-2024 09:37:52 Publishing an artifact: Sys GRPC ManyLinux2014 Python 3.8 debug_symbols
12-Mar-2024 09:37:52 Unable to publish artifact [Sys GRPC ManyLinux2014 Python 3.8 debug_symbols]: the source directory /export/home/cbt-el7-2/bamboohome/xml-data/build-dir/CASA-CRBC661-BPML2014S/source/casa6/casatools/debugsymbols does not exist.
12-Mar-2024 09:37:52 The artifact hasn't been successfully published after 642.6 μs
12-Mar-2024 09:37:52 Publishing an artifact: Sys GRPC ManyLinux2014 Python 3.8 Tar 2
12-Mar-2024 09:37:52 Failing as no matching files has been found and empty artifacts are not allowed.
12-Mar-2024 09:37:52 Unable to publish artifact [Sys GRPC ManyLinux2014 Python 3.8 Tar 2]:
12-Mar-2024 09:37:52 The artifact is required, build will now fail.
12-Mar-2024 09:37:52 The artifact hasn't been successfully published after 61.03 ms
12-Mar-2024 09:37:52 Publishing an artifact: Sys GRPC ManyLinux2014 Casatestutils
12-Mar-2024 09:37:52 Failing as no matching files has been found and empty artifacts are not allowed.
12-Mar-2024 09:37:52 Unable to publish artifact [Sys GRPC ManyLinux2014 Casatestutils]:
12-Mar-2024 09:37:52 The artifact is required, build will now fail.
12-Mar-2024 09:37:52 The artifact hasn't been successfully published after 53.17 ms
12-Mar-2024 09:37:52 Finalising the build...
12-Mar-2024 09:37:52 Stopping timer.
12-Mar-2024 09:37:52 Build CASA-CRBC661-BPML2014S-13 completed.
12-Mar-2024 09:37:52 Running on server: post build plugin 'Build Hanging Detection Configuration'
12-Mar-2024 09:37:52 Running on server: post build plugin 'NCover Results Collector'
12-Mar-2024 09:37:52 Running on server: post build plugin 'Build Labeller'
12-Mar-2024 09:37:52 Running on server: post build plugin 'Clover Delta Calculator'
12-Mar-2024 09:37:52 Running on server: post build plugin 'Maven Dependencies Postprocessor'
12-Mar-2024 09:37:52 All post build plugins have finished
12-Mar-2024 09:37:52 Generating build results summary...
12-Mar-2024 09:37:52 Saving build results to disk...
12-Mar-2024 09:37:52 Store variable context...
12-Mar-2024 09:37:52 Finished building CASA-CRBC661-BPML2014S-13.