Build: #47 failed

Job: OSX 10.14 did not complete

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Build log

The build generated 309 lines of output. Download or view full build log.

11-Feb-2020 16:03:25 Build CASA - Casa 6 Master Package - OSX 10.14 #47 (CASA-C6MP-O1-47) started building on agent cbt-osx1014-dev.cv.nrao.edu
11-Feb-2020 16:03:25 Remote agent on host cbt-osx1014-dev.cv.nrao.edu
11-Feb-2020 16:03:25 Build working directory is /Users/casaci/bamboohome/xml-data/build-dir/CASA-C6MP-O1
11-Feb-2020 16:03:25 Executing build CASA - Casa 6 Master Package - OSX 10.14 #47 (CASA-C6MP-O1-47)
11-Feb-2020 16:03:25 Starting task 'Clean working directory task' of type 'com.atlassian.bamboo.plugins.bamboo-artifact-downloader-plugin:cleanWorkingDirectoryTask'
11-Feb-2020 16:03:25 Cleaning working directory '/Users/casaci/bamboohome/xml-data/build-dir/CASA-C6MP-O1'
11-Feb-2020 16:03:25 Finished task 'Clean working directory task' with result: Success
11-Feb-2020 16:03:25 Running pre-build action: VCS Version Collector
11-Feb-2020 16:03:25
Substituting variable: ${bamboo.repository.branch.name} with master
11-Feb-2020 16:03:25
Substituting variable: ${bamboo.agentWorkingDirectory} with /Users/casaci/bamboohome/xml-data/build-dir
11-Feb-2020 16:03:25
Substituting variable: ${bamboo.agentWorkingDirectory} with /Users/casaci/bamboohome/xml-data/build-dir
11-Feb-2020 16:03:25 Starting task 'Build Tools wheel' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script'
11-Feb-2020 16:03:25
Beginning to execute external process for build 'CASA - Casa 6 Master Package - OSX 10.14 #47 (CASA-C6MP-O1-47)'
... running command line:
/Users/casaci/bamboohome/temp/CASA-C6MP-O1-47-ScriptBuildTask-2858661691331834662.sh
... in: /Users/casaci/bamboohome/xml-data/build-dir/CASA-C6MP-O1
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11-Feb-2020 16:03:25 Set cache size limit to 50.0 GB
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11-Feb-2020 16:04:11 Submodule 'casatools/casacore' (https://github.com/casacore/casacore.git) registered for path 'casatools/casacore'
11-Feb-2020 16:04:11 Submodule 'casatools/grpc-source' (https://github.com/grpc/grpc) registered for path 'casatools/grpc-source'
11-Feb-2020 16:04:11 Cloning into '/Volumes/EXT/bamboohome/xml-data/build-dir/CASA-C6MP-O1/casa6/casatools/casacore'...
11-Feb-2020 16:04:39 Cloning into '/Volumes/EXT/bamboohome/xml-data/build-dir/CASA-C6MP-O1/casa6/casatools/grpc-source'...
11-Feb-2020 16:05:32 Submodule path 'casatools/casacore': checked out '87ff9dafbd637da80cc116a51282bdfc704f11f0'
11-Feb-2020 16:05:34 Submodule path 'casatools/grpc-source': checked out 'cca868ac8f3641df4003a82b7fc54c921e14f765'
11-Feb-2020 16:05:34 Submodule 'third_party/abseil-cpp' (https://github.com/abseil/abseil-cpp) registered for path 'casatools/grpc-source/third_party/abseil-cpp'
11-Feb-2020 16:05:34 Submodule 'third_party/benchmark' (https://github.com/google/benchmark) registered for path 'casatools/grpc-source/third_party/benchmark'
11-Feb-2020 16:05:34 Submodule 'third_party/bloaty' (https://github.com/google/bloaty.git) registered for path 'casatools/grpc-source/third_party/bloaty'
11-Feb-2020 16:05:34 Submodule 'third_party/boringssl' (https://github.com/google/boringssl.git) registered for path 'casatools/grpc-source/third_party/boringssl'
11-Feb-2020 16:05:34 Submodule 'third_party/boringssl-with-bazel' (https://github.com/google/boringssl.git) registered for path 'casatools/grpc-source/third_party/boringssl-with-bazel'
11-Feb-2020 16:05:34 Submodule 'third_party/cares/cares' (https://github.com/c-ares/c-ares.git) registered for path 'casatools/grpc-source/third_party/cares/cares'
11-Feb-2020 16:05:34 Submodule 'third_party/gflags' (https://github.com/gflags/gflags.git) registered for path 'casatools/grpc-source/third_party/gflags'
11-Feb-2020 16:05:34 Submodule 'third_party/googletest' (https://github.com/google/googletest.git) registered for path 'casatools/grpc-source/third_party/googletest'
11-Feb-2020 16:05:34 Submodule 'third_party/protobuf' (https://github.com/google/protobuf.git) registered for path 'casatools/grpc-source/third_party/protobuf'
11-Feb-2020 16:05:34 Submodule 'third_party/zlib' (https://github.com/madler/zlib) registered for path 'casatools/grpc-source/third_party/zlib'
11-Feb-2020 16:05:35 Cloning into '/Volumes/EXT/bamboohome/xml-data/build-dir/CASA-C6MP-O1/casa6/casatools/grpc-source/third_party/abseil-cpp'...
11-Feb-2020 16:05:36 Cloning into '/Volumes/EXT/bamboohome/xml-data/build-dir/CASA-C6MP-O1/casa6/casatools/grpc-source/third_party/benchmark'...
11-Feb-2020 16:05:36 Cloning into '/Volumes/EXT/bamboohome/xml-data/build-dir/CASA-C6MP-O1/casa6/casatools/grpc-source/third_party/bloaty'...
11-Feb-2020 16:05:37 Cloning into '/Volumes/EXT/bamboohome/xml-data/build-dir/CASA-C6MP-O1/casa6/casatools/grpc-source/third_party/boringssl'...
11-Feb-2020 16:05:56 Cloning into '/Volumes/EXT/bamboohome/xml-data/build-dir/CASA-C6MP-O1/casa6/casatools/grpc-source/third_party/boringssl-with-bazel'...
11-Feb-2020 16:06:18 Cloning into '/Volumes/EXT/bamboohome/xml-data/build-dir/CASA-C6MP-O1/casa6/casatools/grpc-source/third_party/cares/cares'...
11-Feb-2020 16:06:19 Cloning into '/Volumes/EXT/bamboohome/xml-data/build-dir/CASA-C6MP-O1/casa6/casatools/grpc-source/third_party/gflags'...
11-Feb-2020 16:06:20 Cloning into '/Volumes/EXT/bamboohome/xml-data/build-dir/CASA-C6MP-O1/casa6/casatools/grpc-source/third_party/googletest'...
11-Feb-2020 16:06:22 Cloning into '/Volumes/EXT/bamboohome/xml-data/build-dir/CASA-C6MP-O1/casa6/casatools/grpc-source/third_party/protobuf'...
11-Feb-2020 16:06:30 Cloning into '/Volumes/EXT/bamboohome/xml-data/build-dir/CASA-C6MP-O1/casa6/casatools/grpc-source/third_party/zlib'...
11-Feb-2020 16:06:31 Submodule path 'casatools/grpc-source/third_party/abseil-cpp': checked out 'cc4bed2d74f7c8717e31f9579214ab52a9c9c610'
11-Feb-2020 16:06:31 Submodule path 'casatools/grpc-source/third_party/benchmark': checked out '5b7683f49e1e9223cf9927b24f6fd3d6bd82e3f8'
11-Feb-2020 16:06:32 Submodule path 'casatools/grpc-source/third_party/bloaty': checked out '73594cde8c9a52a102c4341c244c833aa61b9c06'
11-Feb-2020 16:06:32 Submodule 'third_party/googletest' (https://github.com/google/googletest.git) registered for path 'casatools/grpc-source/third_party/bloaty/third_party/googletest'
11-Feb-2020 16:06:32 Submodule 'third_party/libFuzzer' (https://chromium.googlesource.com/chromium/llvm-project/llvm/lib/Fuzzer) registered for path 'casatools/grpc-source/third_party/bloaty/third_party/libFuzzer'
11-Feb-2020 16:06:32 Submodule 'third_party/re2' (https://github.com/google/re2) registered for path 'casatools/grpc-source/third_party/bloaty/third_party/re2'
11-Feb-2020 16:06:32 Cloning into '/Volumes/EXT/bamboohome/xml-data/build-dir/CASA-C6MP-O1/casa6/casatools/grpc-source/third_party/bloaty/third_party/googletest'...
11-Feb-2020 16:06:34 Cloning into '/Volumes/EXT/bamboohome/xml-data/build-dir/CASA-C6MP-O1/casa6/casatools/grpc-source/third_party/bloaty/third_party/libFuzzer'...
11-Feb-2020 16:06:35 Cloning into '/Volumes/EXT/bamboohome/xml-data/build-dir/CASA-C6MP-O1/casa6/casatools/grpc-source/third_party/bloaty/third_party/re2'...
11-Feb-2020 16:06:36 Submodule path 'casatools/grpc-source/third_party/bloaty/third_party/googletest': checked out 'a2b8a8e07628e5fd60644b6dd99c1b5e7d7f1f47'
11-Feb-2020 16:06:36 Submodule path 'casatools/grpc-source/third_party/bloaty/third_party/libFuzzer': checked out '1b543d6e5073b56be214394890c9193979a3d7e1'
11-Feb-2020 16:06:36 Submodule path 'casatools/grpc-source/third_party/bloaty/third_party/re2': checked out 'c964d9b07816f9b52ca692e23b8b3dba33beec54'
11-Feb-2020 16:06:37 Submodule path 'casatools/grpc-source/third_party/boringssl': checked out 'be2ee342d3781ddb954f91f8a7e660c6f59e87e5'
11-Feb-2020 16:06:39 Submodule path 'casatools/grpc-source/third_party/boringssl-with-bazel': checked out '886e7d75368e3f4fab3f4d0d3584e4abfc557755'
11-Feb-2020 16:06:39 Submodule path 'casatools/grpc-source/third_party/cares/cares': checked out '3be1924221e1326df520f8498d704a5c4c8d0cce'
11-Feb-2020 16:06:40 Submodule path 'casatools/grpc-source/third_party/gflags': checked out '30dbc81fb5ffdc98ea9b14b1918bfe4e8779b26e'
11-Feb-2020 16:06:40 Submodule 'doc' (https://github.com/gflags/gflags.git) registered for path 'casatools/grpc-source/third_party/gflags/doc'
11-Feb-2020 16:06:40 Cloning into '/Volumes/EXT/bamboohome/xml-data/build-dir/CASA-C6MP-O1/casa6/casatools/grpc-source/third_party/gflags/doc'...
11-Feb-2020 16:06:40 Submodule path 'casatools/grpc-source/third_party/gflags/doc': checked out '971dd2a4fadac9cdab174c523c22df79efd63aa5'
11-Feb-2020 16:06:41 Submodule path 'casatools/grpc-source/third_party/googletest': checked out 'ec44c6c1675c25b9827aacd08c02433cccde7780'
11-Feb-2020 16:06:41 Submodule path 'casatools/grpc-source/third_party/protobuf': checked out '2761122b810fe8861004ae785cc3ab39f384d342'
11-Feb-2020 16:06:42 Submodule 'third_party/benchmark' (https://github.com/google/benchmark.git) registered for path 'casatools/grpc-source/third_party/protobuf/third_party/benchmark'
11-Feb-2020 16:06:42 Cloning into '/Volumes/EXT/bamboohome/xml-data/build-dir/CASA-C6MP-O1/casa6/casatools/grpc-source/third_party/protobuf/third_party/benchmark'...
11-Feb-2020 16:06:42 Submodule path 'casatools/grpc-source/third_party/protobuf/third_party/benchmark': checked out '360e66c1c4777c99402cf8cd535aa510fee16573'
11-Feb-2020 16:06:42 Submodule path 'casatools/grpc-source/third_party/zlib': checked out 'cacf7f1d4e3d44d871b605da3b647f07d718623f'
11-Feb-2020 16:06:43 found java version 1.8
11-Feb-2020 16:06:44 configuring CASAtools... this may take a little while...
11-Feb-2020 16:07:52 configure: host os is darwin
11-Feb-2020 16:07:52 checking whether the C++ compiler works... yes
11-Feb-2020 16:07:52 checking for C++ compiler default output file name... a.out
11-Feb-2020 16:07:52 checking for suffix of executables...
11-Feb-2020 16:07:52 checking whether we are cross compiling... no
11-Feb-2020 16:07:52 checking for suffix of object files... o
11-Feb-2020 16:07:52 checking whether we are using the GNU C++ compiler... yes
11-Feb-2020 16:07:53 checking whether /usr/bin/c++ accepts -g... yes
11-Feb-2020 16:07:53 checking for OpenMP flag of C++ compiler... unknown
11-Feb-2020 16:07:53 checking for OpenMP flag of C++ compiler... (cached) unknown
11-Feb-2020 16:07:53 configure: C++11 compiler /usr/bin/c++
11-Feb-2020 16:07:53 checking for std::defaultfloat... yes
11-Feb-2020 16:07:53 checking whether C++ compiler accepts -fcx-fortran-rules... no
11-Feb-2020 16:07:54 checking for flags to support C++11 libc++... no
11-Feb-2020 16:07:54 configure: c++ compiler is /usr/bin/c++
11-Feb-2020 16:07:54 configure:  temporary directory /tmp/casatools-config-61733
11-Feb-2020 16:07:54 configure: creating /tmp/casatools-config-61733
11-Feb-2020 16:07:54 checking whether we are using the GNU C compiler... yes
11-Feb-2020 16:07:54 checking whether /usr/bin/cc accepts -g... yes
11-Feb-2020 16:07:55 checking for /usr/bin/cc option to accept ISO C89... none needed
11-Feb-2020 16:07:55 configure: C compiler /usr/bin/cc
11-Feb-2020 16:07:55 checking whether C compiler accepts -fcx-fortran-rules... no
11-Feb-2020 16:07:55 checking for gfortran-mp-5... no
11-Feb-2020 16:07:55 checking for gfortran-mp-4.9... no
11-Feb-2020 16:07:55 checking for gfortran-mp-4.8... no
11-Feb-2020 16:07:55 checking for gfortran... no
11-Feb-2020 16:07:55 checking whether we are using the GNU Fortran compiler... no
11-Feb-2020 16:07:55 checking whether  accepts -g... no
11-Feb-2020 16:07:55 checking for gfortran-mp-5... gfortran-mp-5
11-Feb-2020 16:07:55 checking whether we are using the GNU Fortran compiler... (cached) no
11-Feb-2020 16:07:55 checking whether gfortran-mp-5 accepts -g... (cached) no
11-Feb-2020 16:07:55 configure: Fortran compiler /opt/casa/03/bin/gfortran-mp-5
11-Feb-2020 16:07:55 checking for ccache... /opt/casa/03/bin/ccache
11-Feb-2020 16:07:55 checking for pread... yes
11-Feb-2020 16:07:55 checking for pwrite... yes
11-Feb-2020 16:07:55 checking for boostlib >= 1.41... yes
11-Feb-2020 16:07:55 checking for python... /opt/casa/03/bin/python
11-Feb-2020 16:07:55 checking for a version of Python >= '2.1.0'... yes
11-Feb-2020 16:07:55 checking for a version of Python >= '2.7.0'... yes
11-Feb-2020 16:07:56 checking for the distutils Python package... yes
11-Feb-2020 16:07:56 checking for Python include path... /opt/casa/03/Library/Frameworks/Python.framework/Versions/3.6/include/python3.6m
11-Feb-2020 16:07:56 checking for Python library path...
11-Feb-2020 16:07:56 checking for Python site-packages path... /opt/casa/03/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages
11-Feb-2020 16:07:56 checking python extra libraries...  -ldl  -framework CoreFoundation
11-Feb-2020 16:07:56 checking python extra linking flags... -L/opt/casa/03/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/config-3.6m-darwin -lpython3.6m -ldl -framework CoreFoundation
11-Feb-2020 16:07:56 checking consistency of all components of python development environment... yes
11-Feb-2020 16:07:56 checking for python... /opt/casa/03/bin/python
11-Feb-2020 16:07:56 checking for numpy includedir... /opt/casa/03/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/numpy/core/include
11-Feb-2020 16:07:57 checking whether linking to numpy library works... yes
11-Feb-2020 16:07:57 checking for readline in -lreadline... yes
11-Feb-2020 16:07:57 checking for flex... flex
11-Feb-2020 16:07:57 checking lex output file root... lex.yy
11-Feb-2020 16:07:57 checking lex library... none needed
11-Feb-2020 16:07:57 checking whether yytext is a pointer... no
11-Feb-2020 16:07:57 checking for bison... bison -y
11-Feb-2020 16:07:57 checking if compiler needs -Werror to reject unknown flags... yes
11-Feb-2020 16:07:57 checking whether pthreads work with -pthread... yes
11-Feb-2020 16:07:57 checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
11-Feb-2020 16:07:57 checking if more special flags are required for pthreads... -D_THREAD_SAFE
11-Feb-2020 16:07:58 checking for PTHREAD_PRIO_INHERIT... yes
11-Feb-2020 16:07:58 checking for pkg-config... /opt/casa/03/bin/pkg-config
11-Feb-2020 16:07:58 checking pkg-config is at least version 0.9.0... yes
11-Feb-2020 16:07:58 checking how to run the C++ preprocessor... /usr/bin/c++ -E
11-Feb-2020 16:07:58 checking for grep that handles long lines and -e... /usr/bin/grep
11-Feb-2020 16:07:58 checking for egrep... /usr/bin/grep -E
11-Feb-2020 16:07:58 checking for ANSI C header files... yes
11-Feb-2020 16:07:58 checking for sys/types.h... yes
11-Feb-2020 16:07:58 checking for sys/stat.h... yes
11-Feb-2020 16:07:58 checking for stdlib.h... yes
11-Feb-2020 16:07:59 checking for string.h... yes
11-Feb-2020 16:07:59 checking for memory.h... yes
11-Feb-2020 16:07:59 checking for strings.h... yes
11-Feb-2020 16:07:59 checking for inttypes.h... yes
11-Feb-2020 16:07:59 checking for stdint.h... yes
11-Feb-2020 16:07:59 checking for unistd.h... yes
11-Feb-2020 16:07:59 checking for CFITSIO... yes
11-Feb-2020 16:07:59 checking for WCSLIB... yes
11-Feb-2020 16:07:59 checking for rpfitsin_ in -lrpfits... no
11-Feb-2020 16:07:59 checking for rpfitsin_ in -lrpfits... yes
11-Feb-2020 16:07:59 checking for gsl-config... /opt/casa/03/bin/gsl-config
11-Feb-2020 16:07:59 checking requested gsl version (2.0)... yes
11-Feb-2020 16:07:59 checking for swig... /opt/casa/03/bin/swig
11-Feb-2020 16:07:59 checking swig version... 3.0.12
11-Feb-2020 16:07:59 checking requested swig version (3.0.0)... yes
11-Feb-2020 16:07:59 checking for libxml2 library... checking for xml2-config... /opt/casa/03/bin/xml2-config
11-Feb-2020 16:08:00 yes
11-Feb-2020 16:08:00 checking for EIGEN... yes
11-Feb-2020 16:08:00 configure: removing /tmp/casatools-config-61733
11-Feb-2020 16:08:00 configure: creating ./config.status
11-Feb-2020 16:08:00 config.status: creating build.properties
11-Feb-2020 16:08:00 config.status: creating setup.py
11-Feb-2020 16:43:51
Request to stop 'CASA-C6MP-O1-47' received from vsuorant
11-Feb-2020 16:43:51 Failing task since return code of [/Users/casaci/bamboohome/temp/CASA-C6MP-O1-47-ScriptBuildTask-2858661691331834662.sh] was 143 while expected 0
11-Feb-2020 16:43:51 Finished task 'Build Tools wheel' with result: Failed
11-Feb-2020 16:43:51 Running post build plugin 'Docker Container Cleanup'
11-Feb-2020 16:43:51 Running post build plugin 'NCover Results Collector'
11-Feb-2020 16:43:51 Running post build plugin 'Clover Results Collector'
11-Feb-2020 16:43:51 Running post build plugin 'npm Cache Cleanup'
11-Feb-2020 16:43:51 Running post build plugin 'Artifact Copier'
11-Feb-2020 16:43:51 Publishing an artifact: OSX10.14  tools wheel
11-Feb-2020 16:43:51 Force Stop build feature is enabled for current plan. Either Bamboo has detected the build has hung or it has been manually stopped.
11-Feb-2020 16:43:51 Attempting to generate stack trace and terminate spawned sub-processes of process id: 760
11-Feb-2020 16:43:51 Unable to publish artifact [OSX10.14  tools wheel]: the source directory /Users/casaci/bamboohome/xml-data/build-dir/CASA-C6MP-O1/casa6/casatools/dist does not exist.
11-Feb-2020 16:43:51 The artifact is required, build will now fail.
11-Feb-2020 16:43:51 The artifact hasn't been successfully published after 3.404 ms
11-Feb-2020 16:43:51 Publishing an artifact: OSX10.14 tasks wheel
11-Feb-2020 16:43:51 Unable to publish artifact [OSX10.14 tasks wheel]: the source directory /Users/casaci/bamboohome/xml-data/build-dir/CASA-C6MP-O1/casa6/casatasks/dist does not exist.
11-Feb-2020 16:43:51 The artifact hasn't been successfully published after 266.2 ?s
11-Feb-2020 16:43:51 Publishing an artifact: OSX10.14 shell wheel
11-Feb-2020 16:43:51 Unable to publish artifact [OSX10.14 shell wheel]: the source directory /Users/casaci/bamboohome/xml-data/build-dir/CASA-C6MP-O1/casashell/dist does not exist.
11-Feb-2020 16:43:51 The artifact hasn't been successfully published after 210.6 ?s
11-Feb-2020 16:43:51 Finalising the build...
11-Feb-2020 16:43:51 Stopping timer.
11-Feb-2020 16:43:51 Build CASA-C6MP-O1-47 completed.
11-Feb-2020 16:43:51 Running on server: post build plugin 'NCover Results Collector'
11-Feb-2020 16:43:51 Running on server: post build plugin 'Build Hanging Detection Configuration'
11-Feb-2020 16:43:51 Running on server: post build plugin 'Clover Delta Calculator'
11-Feb-2020 16:43:51 Running on server: post build plugin 'Maven Dependencies Postprocessor'
11-Feb-2020 16:43:51 All post build plugins have finished
11-Feb-2020 16:43:51 Generating build results summary...
11-Feb-2020 16:43:51 Saving build results to disk...
11-Feb-2020 16:43:51 Logging substituted variables...
11-Feb-2020 16:43:51 Indexing build results...
11-Feb-2020 16:43:51 Finished building CASA-C6MP-O1-47.
11-Feb-2020 16:43:51 Found related process: pid: 62891 ppid: 1 pgid: 758 %cpu: 0.0 %mem: 0.2 cmd: /opt/casa/03/Library/Frameworks/Python.framework/Versions/3.6/Resources/Python.app/Contents/MacOS/Python
11-Feb-2020 16:43:51 Found related process: pid: 62892 ppid: 1 pgid: 758 %cpu: 0.0 %mem: 0.0 cmd: perl
11-Feb-2020 16:43:51 getStackTraceAndKillRelatedProcesses for 2 processes
11-Feb-2020 16:43:51 Executing kill -3 62892
11-Feb-2020 16:43:51 Executing kill -3 62891
11-Feb-2020 16:43:56 Killing: 62892
11-Feb-2020 16:43:56 Executing kill 62892
11-Feb-2020 16:43:56 Killing: 62891
11-Feb-2020 16:43:56 Executing kill 62891
11-Feb-2020 16:44:01 Force Stop build feature is enabled for current plan. Either Bamboo has detected the build has hung or it has been manually stopped.
11-Feb-2020 16:44:01 Has finished generating stack trace and terminating spawned sub-processes of process id: 760