Pipeline

• 

  Rui Xue 6 days ago d4c1cf365fb7cf6405ee6f69b5aa57c67cc1c050

  Pull request #1988: PIPE-3260: Fix false QA failures in `VLASetjy`
  Merge in PIPE/pipeline from PIPE-3260-false-qa-warning-about-lack-of-flux-calibrator-in-hifv_vlasetjy-task to main
  
  * commit '34228abc590663d2714f3d8cc7e37e8d124b2293':
    PIPE-3260: Fix false QA failures in `VLASetjy`
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  Rui Xue 6 days ago b0920bd33c2728cf8292bc773bf49ed5cb9e5ca4

  Pull request #1983: PIPE-3258: fix reference antenna fallback and caltable cleanup in `hifv_semiFinalBPdcals`
  Merge in PIPE/pipeline from PIPE-3258-antenna-fully-flagged-during-bandpass-scan-still-used-as-refant to main
  
  * commit '8dabe1b5b997da832ea10696bb0a42d11d6c2337':
    PIPE-3258: preserve list type in refant fallback and align testBPdcals
    PIPE-3258: fix reference antenna fallback and caltable cleanup in `hifv_semiFinalBPdcals`
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  Rui Xue 6 days ago 0e65d3296eb61d1facf16f2708c2a9cd6711f316

  Pull request #1992: PIPE-3252 append alma task ref to plug main
  Merge in PIPE/pipeline from PIPE-3252-append-alma-task-ref-to-plug-main to main
  
  * commit 'c32c5ee6f49ee372db9c51fcd18132440540ac23':
    PIPE-3252: partition dev docs and add contributors page
    PIPE-3252: include ALMA tasks in User's Guide PDF and clean up doc links
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  Rui Xue 6 days ago c32c5ee6f49ee372db9c51fcd18132440540ac23

  PIPE-3252: partition dev docs and add contributors page
  - partition dev toctrees and `conf.py` exclusions between public and internal builds
  - move `dependencies.md` under `devel/setup/` and update cross-references
  - add Contributors to Basics navigation with courtesy note
  - tweak citation and transition notices in `docs/README.rst`
  - clean up "CASA pipeline tasks" terminology across documentation

  • Contributors.rst (version c32c5ee6f49ee372db9c51fcd18132440540ac23) (diffs)
  • docs/README.rst (version c32c5ee6f49ee372db9c51fcd18132440540ac23) (diffs)
  • docs/source/conf.py (version c32c5ee6f49ee372db9c51fcd18132440540ac23) (diffs)
  • docs/source/contributors.rst (version c32c5ee6f49ee372db9c51fcd18132440540ac23) (diffs)
  • docs/source/devel/reference/callibrary.md (version c32c5ee6f49ee372db9c51fcd18132440540ac23) (diffs)
  • docs/source/devel/setup/dependencies.md (version c32c5ee6f49ee372db9c51fcd18132440540ac23) (diffs)
  • docs/source/devel/setup/index.md (version c32c5ee6f49ee372db9c51fcd18132440540ac23) (diffs)
  • docs/source/devel/testing/diffing_execution_logs.md (version c32c5ee6f49ee372db9c51fcd18132440540ac23) (diffs)
  • docs/source/devel/usage/running_pipeline.md (version c32c5ee6f49ee372db9c51fcd18132440540ac23) (diffs)
  • docs/source/index.rst (version c32c5ee6f49ee372db9c51fcd18132440540ac23) (diffs)
  • docs/source/qa.md (version c32c5ee6f49ee372db9c51fcd18132440540ac23) (diffs)
  • docs/source/users_guide/pipeline-versions-and-documentation.md (version c32c5ee6f49ee372db9c51fcd18132440540ac23) (diffs)
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  Rui Xue 6 days ago 9b876959674a29dd5f275d64375dd01d13d472fe

  PIPE-3252: include ALMA tasks in User's Guide PDF and clean up doc links
  - Add `users_guide/alma_tasks.rst` and Sphinx hooks in conf.py to resolve task hyperlinks in `users_guide.pdf` while excluding them from HTML builds.
  - Drop "known_issues" from `users_guide/index.md` to eliminate duplicate toctree warnings and align navigation hierarchy with VLA.
  - Fix broken cross-references, link syntax, code fences, and typos across the PLUG documentation files.

  • docs/source/conf.py (version 9b876959674a29dd5f275d64375dd01d13d472fe) (diffs)
  • docs/source/users_guide/alma_tasks.rst (version 9b876959674a29dd5f275d64375dd01d13d472fe) (diffs)
  • docs/source/users_guide/data-processing-files.md (version 9b876959674a29dd5f275d64375dd01d13d472fe) (diffs)
  • docs/source/users_guide/helper-text-files.md (version 9b876959674a29dd5f275d64375dd01d13d472fe) (diffs)
  • docs/source/users_guide/index.md (version 9b876959674a29dd5f275d64375dd01d13d472fe) (diffs)
  • docs/source/users_guide/known_issues.md (version 9b876959674a29dd5f275d64375dd01d13d472fe) (diffs)
  • docs/source/users_guide/lowSNR-workflow.md (version 9b876959674a29dd5f275d64375dd01d13d472fe) (diffs)
  • docs/source/users_guide/pipeline-weblog.md (version 9b876959674a29dd5f275d64375dd01d13d472fe) (diffs)
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  Rui Xue 1 week ago c394948a650b5fbd04e48e7d39f16e711270d163

  Pull request #1990: PIPE-3262
  Merge in PIPE/pipeline from PIPE-3262 to main
  
  * commit '8d3c214a77b5638e53eed418fafc0f126617e138':
    PIPE-3262: prevent MPI import deadlock and drop `casaplotserver` in pixi
    PIPE-3262: avoid unconditional mpi4py import in `daskhelpers.py`
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  Rui Xue 1 week ago 8d3c214a77b5638e53eed418fafc0f126617e138

  PIPE-3262: prevent MPI import deadlock and drop `casaplotserver` in pixi
  - Add dynamic `scripts/stubs/casalith.py` to defer MPI initialization to casashell script scope and avoid casatasks import-lock deadlocks (CAS-14037).
  - Propagate PYTHONPATH with scripts/stubs in pixi `casa` and `casampi` tasks.
  - Remove unused `casaplotserver` dependency from `pyproject.toml` and lockfile.

  • pixi.lock (version 8d3c214a77b5638e53eed418fafc0f126617e138) (diffs)
  • pyproject.toml (version 8d3c214a77b5638e53eed418fafc0f126617e138) (diffs)
  • scripts/stubs/casalith.py (version 8d3c214a77b5638e53eed418fafc0f126617e138) (diffs)
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  Rui Xue 1 week ago 8f568c69ee1cef7d1b872cb1261b5ee41ca6a9bb

  PIPE-3262: avoid unconditional mpi4py import in `daskhelpers.py`
  Use `MPIEnvironment.mpi_processor_rank` instead of `mpi4py.MPI.COMM_WORLD.Get_rank()` to prevent unmanaged `MPI_Init` calls and potentially crashes in macOS serial sessions environments with OpenMPI build/version mismatches.

  • pipeline/infrastructure/daskhelpers.py (version 8f568c69ee1cef7d1b872cb1261b5ee41ca6a9bb) (diffs)
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  Rui Xue 1 week ago 34228abc590663d2714f3d8cc7e37e8d124b2293

  PIPE-3260: Fix false QA failures in `VLASetjy`
  - `pipeline/hifv/tasks/setmodel/qa.py`: filter standard calibrators to fields with AMPLITUDE intent, safeguard statistics lookups, and disambiguate MS field names in messages.
  - `pipeline/hifv/tasks/setmodel/qa_test.py`: add unit tests covering single/multiple calibrators, pointing aliases, and edge cases.

  • pipeline/hifv/tasks/setmodel/qa.py (version 34228abc590663d2714f3d8cc7e37e8d124b2293) (diffs)
  • pipeline/hifv/tasks/setmodel/qa_test.py (version 34228abc590663d2714f3d8cc7e37e8d124b2293) (diffs)
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  Rui Xue 16 Sep 2026 8dabe1b5b997da832ea10696bb0a42d11d6c2337 m

  PIPE-3258: preserve list type in refant fallback and align testBPdcals
  Use list slicing instead of `np.delete` for refant fallback, clean up delay caltables on retry in testBPdcals, and streamline docstrings.

  • pipeline/hifv/tasks/semiFinalBPdcals/semiFinalBPdcals.py (version 8dabe1b5b997da832ea10696bb0a42d11d6c2337) (diffs)
  • pipeline/hifv/tasks/testBPdcals/testBPdcals.py (version 8dabe1b5b997da832ea10696bb0a42d11d6c2337) (diffs)
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  Rui Xue 15 Sep 2026 15dcc142b4d05281e356875261f733e0c026ef78 m

  PIPE-3258: fix reference antenna fallback and caltable cleanup in `hifv_semiFinalBPdcals`
  Propagate the updated reference antenna list in the delaycal retry loop, clean up preexisting delay caltables, and guard against empty antenna lists.

  • pipeline/hifv/tasks/semiFinalBPdcals/semiFinalBPdcals.py (version 15dcc142b4d05281e356875261f733e0c026ef78) (diffs)