Pipeline

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  Rui Xue 2 days ago 2f87b8c4e4838b7a0fd72e87100d24710cf43fa3

  Pull request #1931: PIPE-3196: migrate the changes of PIPE-3150/PIPE-3162/PIPE-3191 to MAIN
  Merge in PIPE/pipeline from PIPE-3196-clone-PIPE-3150-3162-to-main to main
  
  * commit 'b8400037f84cab6544bf92d482bcbe93d5c48fa7': (21 commits)
    PIPE-3196/PIPE-3191: Refactor `tmp_dir` to use relative paths
    PIPE-3196/PIPE-3162: Optimize memory footprint by removing advanced indexing copies in Stokes I extraction
    PIPE-3196/PIPE-3162: Refactor findroi parallel-hand correlation extraction by reading `POLARIZATION` table directly and support RR/LL
    PIPE-3196/PIPE-3162: Use the correct data type selection
    PIPE-3196/PIPE-3150: Clip absorption evidence display
    PIPE-3196/PIPE-3150: Plot absorption evidence with original sign
    PIPE-3196/PIPE-3150: Rename ROI ranges column
    PIPE-3196/PIPE-3150: Update FindROI thresholds and evidence
    PIPE-3196/PIPE-3150: Refine FindROI supporting plots
    PIPE-3196/PIPE-3150: Format displayed ROI ranges
    PIPE-3196/PIPE-3150: Update FindROI QA scoring
    PIPE-3196/PIPE-3150: Show positive ROI ranges
    PIPE-3196/PIPE-3150: Fix findroi plot font sizing
    PIPE-3196/PIPE-3150: Tune findroi evidence layout
    PIPE-3196/PIPE-3150: Refine findroi evidence plots
    PIPE-3196/PIPE-3150: Split findroi plots by SPW
    PIPE-3196/PIPE-3150: Restructure findroi summary
    PIPE-3196/PIPE-3150: Improve hif_findroi weblog view
    PIPE-3196/PIPE-3162: Form Stokes I in hif_findroi
    PIPE-3196/PIPE-3162: Relax findroi min channel sanity check
    ...
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  Rui Xue 4 days ago b8400037f84cab6544bf92d482bcbe93d5c48fa7 m

  PIPE-3196/PIPE-3191: Refactor `tmp_dir` to use relative paths

  • pipeline/hif/heuristics/findroi.py (version b8400037f84cab6544bf92d482bcbe93d5c48fa7) (diffs)
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  Rui Xue 4 days ago 1510eed13986b5a2fed597888d11de4b07f669d7 m

  PIPE-3196/PIPE-3162: Optimize memory footprint by removing advanced indexing copies in Stokes I extraction

  • pipeline/hif/heuristics/findroi.py (version 1510eed13986b5a2fed597888d11de4b07f669d7) (diffs)
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  Rui Xue 4 days ago f347fa1c55e3b2416fc12b46171cf8882001bcdb m

  PIPE-3196/PIPE-3162: Refactor findroi parallel-hand correlation extraction by reading `POLARIZATION` table directly and support RR/LL

  • pipeline/hif/heuristics/findroi.py (version f347fa1c55e3b2416fc12b46171cf8882001bcdb) (diffs)
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  Rui Xue 4 days ago 0ee14157201db437ae3e416f49d87da4dd1bfcc0 m

  PIPE-3196/PIPE-3162: Use the correct data type selection

  • pipeline/hif/tasks/findroi/findroi.py (version 0ee14157201db437ae3e416f49d87da4dd1bfcc0) (diffs)
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  ryanaloomis <ryan.a.loomis@gmail.com> 4 days ago a9373c521f333f36248492cdf1a2ac1b4e13cf0e m

  PIPE-3196/PIPE-3150: Clip absorption evidence display

  • pipeline/hif/tasks/findroi/plots.py (version a9373c521f333f36248492cdf1a2ac1b4e13cf0e) (diffs)
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  ryanaloomis <ryan.a.loomis@gmail.com> 4 days ago 3449f1975ef1a2f1c0e2b1e586d0ca5ad0c4da4b m

  PIPE-3196/PIPE-3150: Plot absorption evidence with original sign

  • pipeline/hif/tasks/findroi/plots.py (version 3449f1975ef1a2f1c0e2b1e586d0ca5ad0c4da4b) (diffs)
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  ryanaloomis <ryan.a.loomis@gmail.com> 4 days ago 2e430c471cce62c31d4ec680ce1f951fc9ce8f26 m

  PIPE-3196/PIPE-3150: Rename ROI ranges column

  • pipeline/hif/templates/findroi.mako (version 2e430c471cce62c31d4ec680ce1f951fc9ce8f26) (diffs)
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  ryanaloomis <ryan.a.loomis@gmail.com> 4 days ago 987e43bf88faf3b6460ccb9b60427deb9b52266b m

  PIPE-3196/PIPE-3150: Update FindROI thresholds and evidence

  • pipeline/hif/heuristics/findroi.py (version 987e43bf88faf3b6460ccb9b60427deb9b52266b) (diffs)
  • pipeline/hif/tasks/findroi/plots.py (version 987e43bf88faf3b6460ccb9b60427deb9b52266b) (diffs)
  • pipeline/hif/templates/findroi.mako (version 987e43bf88faf3b6460ccb9b60427deb9b52266b) (diffs)
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  ryanaloomis <ryan.a.loomis@gmail.com> 4 days ago e81c8a96072384da02d6876dc8d4cf88953750be m

  PIPE-3196/PIPE-3150: Refine FindROI supporting plots

  • pipeline/hif/tasks/findroi/plots.py (version e81c8a96072384da02d6876dc8d4cf88953750be) (diffs)
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  ryanaloomis <ryan.a.loomis@gmail.com> 4 days ago b577c1178486a57cb0bee4c31585e718dbe93d7a m

  PIPE-3196/PIPE-3150: Format displayed ROI ranges

  • pipeline/hif/tasks/findroi/renderer.py (version b577c1178486a57cb0bee4c31585e718dbe93d7a) (diffs)
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  ryanaloomis <ryan.a.loomis@gmail.com> 4 days ago 9f59b103c4cda79e99c9e06ee524369a63a1f80c m

  PIPE-3196/PIPE-3150: Update FindROI QA scoring

  • pipeline/hif/heuristics/findroi.py (version 9f59b103c4cda79e99c9e06ee524369a63a1f80c) (diffs)
  • pipeline/hif/tasks/findroi/findroi.py (version 9f59b103c4cda79e99c9e06ee524369a63a1f80c) (diffs)
  • pipeline/hif/tasks/findroi/qa.py (version 9f59b103c4cda79e99c9e06ee524369a63a1f80c) (diffs)
  • pipeline/hif/tasks/findroi/renderer.py (version 9f59b103c4cda79e99c9e06ee524369a63a1f80c) (diffs)
  • pipeline/hif/tasks/findroi/resultobjects.py (version 9f59b103c4cda79e99c9e06ee524369a63a1f80c) (diffs)
  • pipeline/hif/templates/findroi.mako (version 9f59b103c4cda79e99c9e06ee524369a63a1f80c) (diffs)
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  ryanaloomis <ryan.a.loomis@gmail.com> 4 days ago 429781578ef69fe474ead097503122d4607fe687 m

  PIPE-3196/PIPE-3150: Show positive ROI ranges

  • pipeline/hif/tasks/findroi/renderer.py (version 429781578ef69fe474ead097503122d4607fe687) (diffs)
  • pipeline/hif/templates/findroi.mako (version 429781578ef69fe474ead097503122d4607fe687) (diffs)
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  ryanaloomis <ryan.a.loomis@gmail.com> 4 days ago ea3ee195b246fcd05b510c96245623c2a9baa286 m

  PIPE-3196/PIPE-3150: Fix findroi plot font sizing

  • pipeline/hif/tasks/findroi/plots.py (version ea3ee195b246fcd05b510c96245623c2a9baa286) (diffs)
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  ryanaloomis <ryan.a.loomis@gmail.com> 4 days ago 463bb2944ac8235c728330657671b5cce6a9860a m

  PIPE-3196/PIPE-3150: Tune findroi evidence layout

  • pipeline/hif/tasks/findroi/plots.py (version 463bb2944ac8235c728330657671b5cce6a9860a) (diffs)
  • pipeline/hif/tasks/findroi/renderer.py (version 463bb2944ac8235c728330657671b5cce6a9860a) (diffs)
  • pipeline/hif/templates/findroi.mako (version 463bb2944ac8235c728330657671b5cce6a9860a) (diffs)
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  ryanaloomis <ryan.a.loomis@gmail.com> 4 days ago e7a43e7688bc33a94079503a52a2d6c5a0b46d56 m

  PIPE-3196/PIPE-3150: Refine findroi evidence plots

  • pipeline/hif/tasks/findroi/plots.py (version e7a43e7688bc33a94079503a52a2d6c5a0b46d56) (diffs)
  • pipeline/hif/tasks/findroi/renderer.py (version e7a43e7688bc33a94079503a52a2d6c5a0b46d56) (diffs)
  • pipeline/hif/templates/findroi.mako (version e7a43e7688bc33a94079503a52a2d6c5a0b46d56) (diffs)
  • pipeline/infrastructure/renderer/logger.py (version e7a43e7688bc33a94079503a52a2d6c5a0b46d56) (diffs)
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  ryanaloomis <ryan.a.loomis@gmail.com> 4 days ago d2be1386bceb2e7ced6b73550dc8954b16d61c80 m

  PIPE-3196/PIPE-3150: Split findroi plots by SPW

  • pipeline/hif/heuristics/findroi.py (version d2be1386bceb2e7ced6b73550dc8954b16d61c80) (diffs)
  • pipeline/hif/tasks/findroi/plots.py (version d2be1386bceb2e7ced6b73550dc8954b16d61c80) (diffs)
  • pipeline/hif/tasks/findroi/renderer.py (version d2be1386bceb2e7ced6b73550dc8954b16d61c80) (diffs)
  • pipeline/hif/templates/findroi.mako (version d2be1386bceb2e7ced6b73550dc8954b16d61c80) (diffs)
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  ryanaloomis <ryan.a.loomis@gmail.com> 4 days ago 910137d9b953ac71196e3184c981e51bd6d724ac m

  PIPE-3196/PIPE-3150: Restructure findroi summary

  • pipeline/hif/heuristics/findroi.py (version 910137d9b953ac71196e3184c981e51bd6d724ac) (diffs)
  • pipeline/hif/tasks/findroi/renderer.py (version 910137d9b953ac71196e3184c981e51bd6d724ac) (diffs)
  • pipeline/hif/templates/findroi.mako (version 910137d9b953ac71196e3184c981e51bd6d724ac) (diffs)
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  ryanaloomis <ryan.a.loomis@gmail.com> 4 days ago 18ad59d201ae77f6594c9e58c255dfca00994658 m

  PIPE-3196/PIPE-3150: Improve hif_findroi weblog view

  • pipeline/hif/heuristics/findroi.py (version 18ad59d201ae77f6594c9e58c255dfca00994658) (diffs)
  • pipeline/hif/tasks/findroi/plots.py (version 18ad59d201ae77f6594c9e58c255dfca00994658) (diffs)
  • pipeline/hif/tasks/findroi/renderer.py (version 18ad59d201ae77f6594c9e58c255dfca00994658) (diffs)
  • pipeline/hif/templates/findroi.mako (version 18ad59d201ae77f6594c9e58c255dfca00994658) (diffs)
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  ryanaloomis <ryan.a.loomis@gmail.com> 4 days ago 71cd09a1109ed1c6ca2ad1d2bdb0455ef6c57095 m

  PIPE-3196/PIPE-3162: Form Stokes I in hif_findroi

  • pipeline/hif/heuristics/findroi.py (version 71cd09a1109ed1c6ca2ad1d2bdb0455ef6c57095) (diffs)
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  ryanaloomis <ryan.a.loomis@gmail.com> 4 days ago 507055c85650804a861d04acae132c161683491d m

  PIPE-3196/PIPE-3162: Relax findroi min channel sanity check

  • pipeline/hif/heuristics/findroi.py (version 507055c85650804a861d04acae132c161683491d) (diffs)
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  ryanaloomis <ryan.a.loomis@gmail.com> 4 days ago c1bfbe20ffadb02d25bcb3455b981eef06e66e06 m

  PIPE-3196/PIPE-3162: skip fully flagged findroi SPWs

  • pipeline/hif/heuristics/findroi.py (version c1bfbe20ffadb02d25bcb3455b981eef06e66e06) (diffs)
  • pipeline/hif/tasks/findroi/findroi.py (version c1bfbe20ffadb02d25bcb3455b981eef06e66e06) (diffs)