Pipeline

• 

  Rui Xue 30 Jul 2026 ea7fcbc9473f25ebb0dffbe179037c40a3b75e6b

  Pull request #1906: PIPE-2738 to MAIN
  Merge in PIPE/pipeline from docs/PIPE-2738-migrate-cli-documentation to main
  
  * commit 'fedbef94ab69cccfedde2c7137a718b6d38cc612': (114 commits)
    PIPE-2738: fix two docstring gaps found during CLI doc fact-check
    PIPE-2738: improve parameter_linking extension logging and typing
    PIPE-2738: remove unused `mod_name` parameter from `_is_class_based_task`
    PIPE-2738: Remove the wrong statement related to `hsd_flagdata` `autocorr` parameter.
    PIPE-2738: remove incorrect "Low transmission" agent from hsd_flagdata docstring
    PIPE-2738: Refine Furo wide-screen layout symmetry and TOC collapse behavior
    PIPE-2738: add a pipeline Q&A documentation
    PIPE-2997: Explicitly disable the `--locked` flag in pixi setup
    PIPE-2738: Add RL to the "Contributors and Affiliations" section
    PIPE-2890: Improve the clarity of default `flagtargetstemplate.txt` names
    PIPE-2738: Update Pixi version to 0.70.2 in workflow and documentation setup
    PIPE-2738: Update release and timeline documentation for `release/2026.2.0`
    PIPE-2738: Add unified styling for docstring section headings
    PIPE-2890: Remove redundant Returns sections from 67 CLI docstrings
    PIPE-2738: Add parameter linking in Sphinx documentation
    PIPE-2738: Add parameter documentation note to class-based CLI tasks
    PIPE-2738: Add type hints for `h_init`
    PIPE-2890: Update diagnostic plot description for missed line channels in `hsd_imaging`
    PIPE-2738: Convert task references to Sphinx cross-references
    PIPE-2738: Add code review and merge guidelines to "Git development workflow"
    ...
• 

  Rui Xue 29 Jul 2026 fedbef94ab69cccfedde2c7137a718b6d38cc612 m

  PIPE-2738: fix two docstring gaps found during CLI doc fact-check
  - `hifa_tsysflag`: add missing `parallel` parameter description to
    TsysflagInputs.__init__; wording borrowed from hifa_bandpass
  - `hif_makeimlist`: replace inline "(not implemented)" note for `outframe`
    with a proper Note block; parameter is kept for future development

  • pipeline/hif/tasks/makeimlist/makeimlist.py (version fedbef94ab69cccfedde2c7137a718b6d38cc612) (diffs)
  • pipeline/hifa/tasks/tsysflag/tsysflag.py (version fedbef94ab69cccfedde2c7137a718b6d38cc612) (diffs)
• 

  Rui Xue 29 Jul 2026 13b84f8c355d17808abd2d1fb895c58560d0075a m

  PIPE-2738: improve parameter_linking extension logging and typing
  - Replace bare `except Exception` with narrow `except (OSError, AttributeError, ValueError)`
  - Switch `print()` calls to `logger.warning/info()` for proper Sphinx log integration
  - Replace `typing.Dict` with built-in `dict`

  • docs/source/_extension/parameter_linking.py (version 13b84f8c355d17808abd2d1fb895c58560d0075a) (diffs)
• 

  Rui Xue 29 Jul 2026 02c247069b20c4fba25458177d727cdb37315529 m

  PIPE-2738: remove unused `mod_name` parameter from `_is_class_based_task`

  • docs/source/_extension/cli_function_stubs.py (version 02c247069b20c4fba25458177d727cdb37315529) (diffs)
• 

  Rui Xue 29 Jul 2026 23d5fcc689fab98da4100fcb18c98ad76ad3909d m

  PIPE-2738: Remove the wrong statement related to `hsd_flagdata` `autocorr` parameter.

  • pipeline/hsd/cli/hsd_flagdata.py (version 23d5fcc689fab98da4100fcb18c98ad76ad3909d) (diffs)
• 

  Rui Xue 29 Jul 2026 91cdc20542d0b54f0399656a19b1cf9d73d0321c m

  PIPE-2738: remove incorrect "Low transmission" agent from hsd_flagdata docstring
  The Low Transmission flagging agent is not active for SD tasks:
  `FlagDeterALMASingleDishInputs` does not override the base-class default
  (lowtrans=False), so the agent is never executed by `hsd_flagdata`.

  • pipeline/hsd/cli/hsd_flagdata.py (version 91cdc20542d0b54f0399656a19b1cf9d73d0321c) (diffs)
• 

  Rui Xue 29 Jul 2026 3b18ae58db0f5e96341c112c45c2cc41d2a0181f m

  Merge tag '2026.1.1.102' into docs/PIPE-2738-migrate-cli-documentation
  Resolved conflicts:
  
  - pipeline/hif/cli/hif_findcont.py
  - pipeline/hif/cli/hif_mstransform.py
• 

  Rui Xue 30 Jun 2026 ef142bd91b68da3e95cacc31630369c85fd736d6 m

  Merge branch 'main' into docs/PIPE-2738-migrate-cli-documentation
• 

  Rui Xue 30 Jun 2026 64e8e5f36803ed874c57025011c803e95b9d030d m

  PIPE-2738: Refine Furo wide-screen layout symmetry and TOC collapse behavior
  - Extend sidebar drawer background across the left viewport margin (`calc(50% - 34rem)`) so the navigation panel background color fills empty screen space cleanly.
  - Standardize sidebar navigation container width to 15rem and allow main article content to expand up to 77rem when the right Table of Contents (TOC) is folded.
  - Track TOC toggle button position continuously (`requestAnimationFrame` over ~300ms) during drawer collapse/expand animations so the button moves smoothly with the drawer edge without overlapping article text.
  - Clean up whitespace and refine FAQ documentation.

  • docs/source/_static/custom_theme.css (version 64e8e5f36803ed874c57025011c803e95b9d030d) (diffs)
  • docs/source/_static/furo_layout.js (version 64e8e5f36803ed874c57025011c803e95b9d030d) (diffs)
  • docs/source/qa.md (version 64e8e5f36803ed874c57025011c803e95b9d030d) (diffs)
• 

  Rui Xue 30 Jun 2026 f3c7341cc402b96acc38a8c55ffa49dc55feed1e m

  PIPE-2738: add a pipeline Q&A documentation
  - Clarify differences between PPR and Recipe workflows
  - Improve local monolithic tarball build steps and developer installation guidelines.

  • docs/source/conf.py (version f3c7341cc402b96acc38a8c55ffa49dc55feed1e) (diffs)
  • docs/source/index.rst (version f3c7341cc402b96acc38a8c55ffa49dc55feed1e) (diffs)
  • docs/source/qa.md (version f3c7341cc402b96acc38a8c55ffa49dc55feed1e) (diffs)
• 

  Rui Xue 28 Jun 2026 b063500900fde5a3413fb28d1bcbc15c0f389070 m

  PIPE-2997: Explicitly disable the `--locked` flag in pixi setup

  • .github/workflows/env-setup-run-template-pixi.yml (version b063500900fde5a3413fb28d1bcbc15c0f389070) (diffs)
• 

  Rui Xue 25 Jun 2026 71ea26a9b12932f021a1f5745515967ddbf6b403 m

  PIPE-2738: Add RL to the "Contributors and Affiliations" section

  • Contributors.rst (version 71ea26a9b12932f021a1f5745515967ddbf6b403) (diffs)
• 

  Rui Xue 25 Jun 2026 5b25dc5a4556f08d4a77333bcf2276ccb09cb70a m

  PIPE-2890: Improve the clarity of default `flagtargetstemplate.txt` names

  • pipeline/hifa/tasks/flagging/flagtargetsalma.py (version 5b25dc5a4556f08d4a77333bcf2276ccb09cb70a) (diffs)
  • pipeline/hifv/tasks/flagging/flagtargetsdata.py (version 5b25dc5a4556f08d4a77333bcf2276ccb09cb70a) (diffs)
• 

  Rui Xue 24 Jun 2026 1fb8c86e923a476eafc0e2279830f79af5932c1e m

  PIPE-2738: Update Pixi version to 0.70.2 in workflow and documentation setup
  Note that ver-0.71.0 appears to introduce a breaking change to the `macos` runtime minimal spec within [system-requirements]. We might need to migrate the macOS requirement of "15.0" into the rich platform spec later.

  • .github/workflows/env-setup-run-template-pixi.yml (version 1fb8c86e923a476eafc0e2279830f79af5932c1e) (diffs)
  • .readthedocs.yaml (version 1fb8c86e923a476eafc0e2279830f79af5932c1e) (diffs)
• 

  Rui Xue 23 Jun 2026 24d3fcb8cb25b47a66fa6742ad1ba2ac4e2508b6 m

  PIPE-2738: Update release and timeline documentation for `release/2026.2.0`

  • docs/source/releases.md (version 24d3fcb8cb25b47a66fa6742ad1ba2ac4e2508b6) (diffs)
  • docs/source/timeline.md (version 24d3fcb8cb25b47a66fa6742ad1ba2ac4e2508b6) (diffs)
• 

  Rui Xue 20 Jun 2026 c93cec66c863ee0bbbc5625ce3d835c0e32a86a7 m

  PIPE-2738: Add unified styling for docstring section headings
  Style Notes, Examples, and other section headings (p.rubric) to match
  Parameters and Return Type field lists. Includes light/dark mode support
  for consistent visual hierarchy across all documentation sections.

  • docs/source/_static/custom_theme.css (version c93cec66c863ee0bbbc5625ce3d835c0e32a86a7) (diffs)
• 

  Rui Xue 19 Jun 2026 904d08d4ca999f45daa86ad369284ec81c26b516 m

  PIPE-2890: Remove redundant Returns sections from 67 CLI docstrings
  Sphinx's autodoc_typehints='description' automatically generates "Return type:"
  fields from function annotations. Explicit "Returns:" sections in docstrings
  created duplicate entries in the HTML output. Removed the redundant sections
  from all CLI wrapper functions across pipeline modules (h, hif, hifa, hifv,
  hsd, hsdn).

  • pipeline/h/cli/h_applycal.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/h/cli/h_importdata.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/h/cli/h_init.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/h/cli/h_tsyscal.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hif/cli/hif_analyzealpha.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hif/cli/hif_antpos.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hif/cli/hif_applycal.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hif/cli/hif_checkproductsize.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hif/cli/hif_correctedampflag.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hif/cli/hif_findcont.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hif/cli/hif_makeimages.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hif/cli/hif_makeimlist.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hif/cli/hif_makermsimages.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hif/cli/hif_rawflagchans.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hif/cli/hif_refant.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hif/cli/hif_selfcal.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hif/cli/hif_setjy.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hif/cli/hif_setmodels.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hif/cli/hif_transformimagedata.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hif/cli/hif_uvcontsub.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hifa/cli/hifa_bandpassflag.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hifv/cli/hifv_analyzestokescubes.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hifv/cli/hifv_applycals.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hifv/cli/hifv_checkflag.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hifv/cli/hifv_circfeedpolcal.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hifv/cli/hifv_exportdata.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hifv/cli/hifv_exportvlassdata.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hifv/cli/hifv_finalcals.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hifv/cli/hifv_fixpointing.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hifv/cli/hifv_flagcal.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hifv/cli/hifv_flagdata.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hifv/cli/hifv_flagtargetsdata.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hifv/cli/hifv_fluxboot.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hifv/cli/hifv_gaincurves.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hifv/cli/hifv_hanning.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hifv/cli/hifv_importdata.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hifv/cli/hifv_mstransform.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hifv/cli/hifv_opcal.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hifv/cli/hifv_pbcor.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hifv/cli/hifv_plotsummary.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hifv/cli/hifv_priorcals.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hifv/cli/hifv_restoredata.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hifv/cli/hifv_restorepims.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hifv/cli/hifv_rqcal.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hifv/cli/hifv_selfcal.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hifv/cli/hifv_semiFinalBPdcals.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hifv/cli/hifv_solint.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hifv/cli/hifv_statwt.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hifv/cli/hifv_swpowcal.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hifv/cli/hifv_syspower.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hifv/cli/hifv_targetflag.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hifv/cli/hifv_tecmaps.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hifv/cli/hifv_testBPdcals.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hifv/cli/hifv_vlasetjy.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hifv/cli/hifv_vlassmasking.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hsd/cli/hsd_applycal.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hsd/cli/hsd_atmcor.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hsd/cli/hsd_baseline.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hsd/cli/hsd_blflag.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hsd/cli/hsd_exportdata.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hsd/cli/hsd_flagdata.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hsd/cli/hsd_imaging.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hsd/cli/hsd_importdata.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hsd/cli/hsd_k2jycal.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hsd/cli/hsd_restoredata.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hsd/cli/hsd_skycal.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
  • pipeline/hsd/cli/hsd_tsysflag.py (version 904d08d4ca999f45daa86ad369284ec81c26b516) (diffs)
• 

  Rui Xue 19 Jun 2026 0053e5fd33d1cbaed2c52af13798d7b4ef7ab4eb m

  PIPE-2738: Add parameter linking in Sphinx documentation
  Implement extension to create clickable links between function signature
  parameters and their documentation entries. Parameters now link to their
  full descriptions with visual highlighting when targeted.

  • docs/source/_extension/parameter_linking.py (version 0053e5fd33d1cbaed2c52af13798d7b4ef7ab4eb) (diffs)
  • docs/source/conf.py (version 0053e5fd33d1cbaed2c52af13798d7b4ef7ab4eb) (diffs)
• 

  Rui Xue 19 Jun 2026 ae7b37e58b0f11eda0c50f297e285bd5ad6d6da9 m

  PIPE-2738: Add parameter documentation note to class-based CLI tasks
  Update `cli_function_stubs.py` extension to automatically inject a note into
  documentation for class-based pipeline tasks (registered in task_registry),
  explaining that parameters set to None use intelligent defaults from the
  pipeline context. Regular Python functions (like h_init, h_resume) do not
  receive the note.

  • docs/source/_extension/cli_function_stubs.py (version ae7b37e58b0f11eda0c50f297e285bd5ad6d6da9) (diffs)
• 

  Rui Xue 19 Jun 2026 7e3963df9229209912402364b37aca34675cc503 m

  PIPE-2738: Add type hints for `h_init`

  • pipeline/h/cli/h_init.py (version 7e3963df9229209912402364b37aca34675cc503) (diffs)
• 

  Rui Xue 19 Jun 2026 f112aa4a04739ecc20b460499c298c3007da9826 m

  PIPE-2890: Update diagnostic plot description for missed line channels in `hsd_imaging`

  • docs/source/figures/missedlines.png (version f112aa4a04739ecc20b460499c298c3007da9826) (diffs)
  • pipeline/hsd/cli/hsd_imaging.py (version f112aa4a04739ecc20b460499c298c3007da9826) (diffs)
• 

  Rui Xue 19 Jun 2026 cc53a07287c4618f9011f702d14776de9f1ca809 m

  PIPE-2738: Convert task references to Sphinx cross-references
  Replace backtick-quoted task names with :py:func: cross-reference syntax
  in 31 CLI docstrings (h, hif, hifa, hsd modules) to enable proper hyperlink
  generation in Sphinx-built documentation.

  • pipeline/h/cli/h_init.py (version cc53a07287c4618f9011f702d14776de9f1ca809) (diffs)
  • pipeline/h/cli/h_tsyscal.py (version cc53a07287c4618f9011f702d14776de9f1ca809) (diffs)
  • pipeline/hif/cli/hif_antpos.py (version cc53a07287c4618f9011f702d14776de9f1ca809) (diffs)
  • pipeline/hif/cli/hif_editimlist.py (version cc53a07287c4618f9011f702d14776de9f1ca809) (diffs)
  • pipeline/hif/cli/hif_findcont.py (version cc53a07287c4618f9011f702d14776de9f1ca809) (diffs)
  • pipeline/hif/cli/hif_makeimages.py (version cc53a07287c4618f9011f702d14776de9f1ca809) (diffs)
  • pipeline/hif/cli/hif_makeimlist.py (version cc53a07287c4618f9011f702d14776de9f1ca809) (diffs)
  • pipeline/hif/cli/hif_selfcal.py (version cc53a07287c4618f9011f702d14776de9f1ca809) (diffs)
  • pipeline/hif/cli/hif_setmodels.py (version cc53a07287c4618f9011f702d14776de9f1ca809) (diffs)
  • pipeline/hif/cli/hif_uvcontsub.py (version cc53a07287c4618f9011f702d14776de9f1ca809) (diffs)
  • pipeline/hifa/cli/hifa_antpos.py (version cc53a07287c4618f9011f702d14776de9f1ca809) (diffs)
  • pipeline/hifa/cli/hifa_bandpass.py (version cc53a07287c4618f9011f702d14776de9f1ca809) (diffs)
  • pipeline/hifa/cli/hifa_bandpassflag.py (version cc53a07287c4618f9011f702d14776de9f1ca809) (diffs)
  • pipeline/hifa/cli/hifa_diffgaincal.py (version cc53a07287c4618f9011f702d14776de9f1ca809) (diffs)
  • pipeline/hifa/cli/hifa_exportdata.py (version cc53a07287c4618f9011f702d14776de9f1ca809) (diffs)
  • pipeline/hifa/cli/hifa_flagdata.py (version cc53a07287c4618f9011f702d14776de9f1ca809) (diffs)
  • pipeline/hifa/cli/hifa_fluxcalflag.py (version cc53a07287c4618f9011f702d14776de9f1ca809) (diffs)
  • pipeline/hifa/cli/hifa_gfluxscale.py (version cc53a07287c4618f9011f702d14776de9f1ca809) (diffs)
  • pipeline/hifa/cli/hifa_gfluxscaleflag.py (version cc53a07287c4618f9011f702d14776de9f1ca809) (diffs)
  • pipeline/hifa/cli/hifa_lock_refant.py (version cc53a07287c4618f9011f702d14776de9f1ca809) (diffs)
  • pipeline/hifa/cli/hifa_polcalflag.py (version cc53a07287c4618f9011f702d14776de9f1ca809) (diffs)
  • pipeline/hifa/cli/hifa_renorm.py (version cc53a07287c4618f9011f702d14776de9f1ca809) (diffs)
  • pipeline/hifa/cli/hifa_restoredata.py (version cc53a07287c4618f9011f702d14776de9f1ca809) (diffs)
  • pipeline/hifa/cli/hifa_session_refant.py (version cc53a07287c4618f9011f702d14776de9f1ca809) (diffs)
  • pipeline/hifa/cli/hifa_spwphaseup.py (version cc53a07287c4618f9011f702d14776de9f1ca809) (diffs)
  • pipeline/hifa/cli/hifa_timegaincal.py (version cc53a07287c4618f9011f702d14776de9f1ca809) (diffs)
  • pipeline/hifa/cli/hifa_tsysflag.py (version cc53a07287c4618f9011f702d14776de9f1ca809) (diffs)
  • pipeline/hifa/cli/hifa_tsysflagcontamination.py (version cc53a07287c4618f9011f702d14776de9f1ca809) (diffs)
  • pipeline/hsd/cli/hsd_atmcor.py (version cc53a07287c4618f9011f702d14776de9f1ca809) (diffs)
  • pipeline/hsd/cli/hsd_baseline.py (version cc53a07287c4618f9011f702d14776de9f1ca809) (diffs)
  • pipeline/hsd/cli/hsd_imaging.py (version cc53a07287c4618f9011f702d14776de9f1ca809) (diffs)
• 

  Rui Xue 19 Jun 2026 f36931c5713e731267433c27cc66e20b22e9f060 m

  Merge remote-tracking branch 'origin/main' into docs/PIPE-2738-migrate-cli-documentation
  Resolved conflicts:
  - pipeline/hifa/cli/hifa_gfluxscaleflag.py
  - pipeline/hifa/cli/hifa_lock_refant.py
  - pipeline/hifa/cli/hifa_polcalflag.py
  - pipeline/hsd/cli/hsd_k2jycal.py
• 

  Rui Xue 20 May 2026 ce4ea192f83cac7e361e6db95aa55116f54e1104 m

  PIPE-2738: Add code review and merge guidelines to "Git development workflow"

  • docs/source/devel/process/git_dev_workflow.md (version ce4ea192f83cac7e361e6db95aa55116f54e1104) (diffs)
• 

  Rui Xue 18 May 2026 4d5cafd7dc083833861ca95a060112eaa1138556 m

  PIPE-2738: Update `index.md` to reorder and include `selfcal_workflow.md` and `VLASS_fits_header_keywords.md`

  • docs/source/devel/reference/index.md (version 4d5cafd7dc083833861ca95a060112eaa1138556) (diffs)
• 

  Rui Xue 15 May 2026 1d4622307226fef3b970402738c2c0e9484e3ca0 m

  PIPE-2922: Update test-unit-pixi matrix to match current Pixi env setup
  - Replace removed casa671-py312 with casa674-py312 (PL2026-CASA branch)
  - Add casa676-py312 and casa676-py313 (CASA master branch)
  - Update artifact pinning from casa675-py312 to casa674-py312 (default env)

  • .github/workflows/test-unit-pixi.yml (version 1d4622307226fef3b970402738c2c0e9484e3ca0) (diffs)
• 

  Rui Xue 15 May 2026 0d3d8de7cdd00e3daab428dd94dc5aa07ee5950b m

  PIPE-2922: update Pixi CASA env matrix and tighten version bounds
  - Bump casatasks/casatools minimum from >=6.6.6 to >=6.7.4.2
  - Remove obsolete casa671-py312 feature/environment (no longer compatible)
  - Rename casa675 comment from "dev/snapshot" to "latest release branch"
  - Add casa676-py312 and casa676-py313 environments for CASA 6.7.6 (master branch)
  - Switch default + docs environments from casa675 to casa674 (PL2026-CASA branch)
  - Drop no-op solo solve-groups from named environments; keep only the
    default/docs pairing which share a meaningful solve-group

  • pyproject.toml (version 0d3d8de7cdd00e3daab428dd94dc5aa07ee5950b) (diffs)
• 

  Rui Xue 14 May 2026 4f4996bcb4e92eb131ed66ce9171172844aa2266 m

  PIPE-2922: Bump MIN_CASA_REVISION to 6.7.4.2 and add discouraged version range
  Add DISCOURAGED_CASA_REVISION_RANGE ([6.7.5.0, 6.7.6.0]) to warn when the
  running CASA version is known to have issues (casatasks.getjyperkalma not
  implemented; see PIPE-2967/CAS-14704). Unlike the hard min/max checks, this
  emits a warning rather than a critical log and does not block execution.
  
  Also convert the existing LOG.critical() calls to lazy %-formatting.

  • pipeline/infrastructure/launcher.py (version 4f4996bcb4e92eb131ed66ce9171172844aa2266) (diffs)
• 

  Rui Xue 14 May 2026 8a5ab0900b15b3ebcf312bdb3afa2b512315d8ed m

  Merge remote-tracking branch 'origin/main' into docs/PIPE-2738-migrate-cli-documentation
• 

  Rui Xue 11 May 2026 043b535a62ae8415922736cbddc2368fe5eb1611 m

  PIPE-2738: Unshallow RTD clone to fix version string detection

  • .readthedocs.yaml (version 043b535a62ae8415922736cbddc2368fe5eb1611) (diffs)
• 

  Rui Xue 11 May 2026 413bf14efcb9d2aa979a1faa7079e63f3713658d m

  PIPE-2738: Fetch all tags before RTD build
  Add `git fetch --tags` as the first build command in .readthedocs.yaml
  so that git tags are available during the Sphinx build (e.g. for
  `sphinx-multiversion` or version string generation); by default, RTD only downloads the 50 most recent commits of the target branch.

  • .readthedocs.yaml (version 413bf14efcb9d2aa979a1faa7079e63f3713658d) (diffs)
• 

  Rui Xue 11 May 2026 5bfb56f076fc55fe835a6a0c46d63a321d6e7407 m

  PIPE-2738: Update ticket workflow documentation to clarify issue types and improve consistency following feedbacks

  • docs/source/devel/process/ticket_workflow.md (version 5bfb56f076fc55fe835a6a0c46d63a321d6e7407) (diffs)
• 

  Rui Xue 09 May 2026 f6fd16623609e029f199465d706d6b9ea401c05f m

  PIPE-2738: Refactor testing documentation to enhance clarity and organization

  • docs/source/devel/testing/automated_tests.md (version f6fd16623609e029f199465d706d6b9ea401c05f) (diffs)
  • docs/source/devel/testing/index.md (version f6fd16623609e029f199465d706d6b9ea401c05f) (diffs)
  • docs/source/devel/testing/unit_tests.md (version f6fd16623609e029f199465d706d6b9ea401c05f) (diffs)
  • docs/source/tickets/pipe3061.md (version f6fd16623609e029f199465d706d6b9ea401c05f) (diffs)
• 

  Rui Xue 09 May 2026 e9a0a439bb859df46dec6499cc7c0e44c59eda48 m

  PIPE-2738: Auto-expand content on pages with no local TOC

  • docs/source/_static/custom_theme.css (version e9a0a439bb859df46dec6499cc7c0e44c59eda48) (diffs)
  • docs/source/_static/furo_layout.js (version e9a0a439bb859df46dec6499cc7c0e44c59eda48) (diffs)
• 

  Rui Xue 09 May 2026 2b07fe1bdd98b7198cdb53b923691304462b3112 m

  PIPE-2738: Update unit tests documentation by adding new location for heuristics tests

  • docs/source/devel/testing/automated_tests.md (version 2b07fe1bdd98b7198cdb53b923691304462b3112) (diffs)
  • docs/source/devel/testing/unit_tests.md (version 2b07fe1bdd98b7198cdb53b923691304462b3112) (diffs)
• 

  Rui Xue 09 May 2026 75a013cba3d64a2d25431a9601bf20024c75cd51 m

  PIPE-2738: Consolidate testing documentation under devel/testing/
  Replace legacy testing_docs/ RST files and pipeline_tests.md with a
  restructured Markdown-based layout under docs/source/devel/testing/.
  
  New files:
  - unit_tests.md — unit test naming, running, writing, coverage, scoping
  - automated_tests.md — PipelineTester framework, component/regression tests,
    inputs, versioned results, running commands, mpicasa, coverage
  - pytest_reference.md — custom options, auto/manual markers, examples
  - test_environment.md — casa-data and pipeline-testdata configuration
  
  Updated:
  - index.md — overview table, repo layout, quick-start commands, toctree
  - index.rst — removed legacy testing_docs/ toctree entry
  
  Removed: testing_docs/ (3 RST files), pipeline_tests.md

  • docs/source/devel/testing/automated_tests.md (version 75a013cba3d64a2d25431a9601bf20024c75cd51) (diffs)
  • docs/source/devel/testing/index.md (version 75a013cba3d64a2d25431a9601bf20024c75cd51) (diffs)
  • docs/source/devel/testing/pipeline_tests.md (version 75a013cba3d64a2d25431a9601bf20024c75cd51) (diffs)
  • docs/source/devel/testing/pytest_reference.md (version 75a013cba3d64a2d25431a9601bf20024c75cd51) (diffs)
  • docs/source/devel/testing/test_environment.md (version 75a013cba3d64a2d25431a9601bf20024c75cd51) (diffs)
  • docs/source/devel/testing/unit_tests.md (version 75a013cba3d64a2d25431a9601bf20024c75cd51) (diffs)
  • docs/source/index.rst (version 75a013cba3d64a2d25431a9601bf20024c75cd51) (diffs)
  • docs/source/testing_docs/automated_testing.rst (version 75a013cba3d64a2d25431a9601bf20024c75cd51) (diffs)
  • docs/source/testing_docs/index.rst (version 75a013cba3d64a2d25431a9601bf20024c75cd51) (diffs)
  • docs/source/testing_docs/unit_testing.rst (version 75a013cba3d64a2d25431a9601bf20024c75cd51) (diffs)
• 

  Rui Xue 09 May 2026 ba2c5fa439d208651c3433dafe2a28cec24dcea1 m

  PIPE-2738: Rename documentation for diffing pipeline execution logs and update index

  • docs/source/devel/testing/diffing_execution_logs.md (version ba2c5fa439d208651c3433dafe2a28cec24dcea1) (diffs)
  • docs/source/devel/testing/index.md (version ba2c5fa439d208651c3433dafe2a28cec24dcea1) (diffs)
• 

  Rui Xue 09 May 2026 353601b66932a831cb4dba10d7b33d97869046a8 m

  PIPE-2738: Refactor logging documentation to consolidate log output restrictions and enhance clarity

  • docs/source/devel/reference/logging.md (version 353601b66932a831cb4dba10d7b33d97869046a8) (diffs)
  • docs/source/devel/testing/comparing_pipeline_executions.md (version 353601b66932a831cb4dba10d7b33d97869046a8) (diffs)
• 

  Rui Xue 09 May 2026 b4499d99b572a7357d4d97cf15d3de2a8ac6b900 m

  PIPE-2738: Refactor documentation for comparing pipeline executions to enhance clarity and update examples

  • docs/source/devel/testing/comparing_pipeline_executions.md (version b4499d99b572a7357d4d97cf15d3de2a8ac6b900) (diffs)
• 

  Rui Xue 08 May 2026 aaf0561166ca32a5a45fafb3ab7801661880c7a3 m

  PIPE-2738: Refactor documentation for hsd_atmcor and hsd_imaging functions to improve clarity and readability

  • pipeline/hsd/cli/hsd_atmcor.py (version aaf0561166ca32a5a45fafb3ab7801661880c7a3) (diffs)
  • pipeline/hsd/cli/hsd_imaging.py (version aaf0561166ca32a5a45fafb3ab7801661880c7a3) (diffs)
• 

  Rui Xue 08 May 2026 f5aaa6a733753127c9998077f680e8954edc2db9 m

  PIPE-2738: Add new figures and enhance documentation clarity in hsd_baseline and hsd_importdata

  • docs/source/figures/guide-img036.jpg (version f5aaa6a733753127c9998077f680e8954edc2db9) (diffs)
  • docs/source/figures/hsd_baseline_representative.png (version f5aaa6a733753127c9998077f680e8954edc2db9) (diffs)
  • pipeline/hsd/cli/hsd_atmcor.py (version f5aaa6a733753127c9998077f680e8954edc2db9) (diffs)
  • pipeline/hsd/cli/hsd_baseline.py (version f5aaa6a733753127c9998077f680e8954edc2db9) (diffs)
  • pipeline/hsd/cli/hsd_importdata.py (version f5aaa6a733753127c9998077f680e8954edc2db9) (diffs)
  • pipeline/hsd/cli/hsd_k2jycal.py (version f5aaa6a733753127c9998077f680e8954edc2db9) (diffs)
  • pipeline/hsd/tasks/importdata/importdata.py (version f5aaa6a733753127c9998077f680e8954edc2db9) (diffs)
• 

  Rui Xue 08 May 2026 b00757b412ff25aaf8f5604adda025da4691bbbd m

  PIPE-2738: Organize documentation structure by adding references section and updating index

  • docs/source/examples/test2.rst (version b00757b412ff25aaf8f5604adda025da4691bbbd) (diffs)
  • docs/source/index.rst (version b00757b412ff25aaf8f5604adda025da4691bbbd) (diffs)
  • docs/source/references.rst (version b00757b412ff25aaf8f5604adda025da4691bbbd) (diffs)
  • docs/source/references/pipeline.bib (version b00757b412ff25aaf8f5604adda025da4691bbbd) (diffs)
• 

  Rui Xue 08 May 2026 b397618bd3df25270066dd05c3ec893d5f9b9db6 m

  PIPE-2738: Clarify warning about pipeline operation support in Conda environment documentation

  • docs/source/devel/setup/conda_setup.rst (version b397618bd3df25270066dd05c3ec893d5f9b9db6) (diffs)
• 

  Rui Xue 08 May 2026 2587237cc527f8e6e9491ec557cc17ea887f16f5 m

  PIPE-2738: Add test data setup instructions for unit and regression tests in Pixi tasks documentation

  • docs/source/devel/setup/pixi_tasks.md (version 2587237cc527f8e6e9491ec557cc17ea887f16f5) (diffs)
• 

  Rui Xue 08 May 2026 b05f201564b38d6a1cd478b252c5d82c765bc1e3 m

  PIPE-2738: Clarify guidelines for `pipeline.extern` namespace and emphasize dual-use capability for long-term residency; update notes on adaptation period and migration process for improved clarity

  • docs/source/devel/process/heuristics_dev_integration.md (version b05f201564b38d6a1cd478b252c5d82c765bc1e3) (diffs)
  • docs/source/devel/process/ticket_workflow.md (version b05f201564b38d6a1cd478b252c5d82c765bc1e3) (diffs)
• 

  Rui Xue 06 May 2026 ef592a57523d2d85ab3af5fb086e57f36b47f81c m

  PIPE-2738: Rename section from 'Ticket Workflow' to 'Standard Ticket' for clarity

  • docs/source/devel/process/ticket_workflow.md (version ef592a57523d2d85ab3af5fb086e57f36b47f81c) (diffs)
• 

  Rui Xue 06 May 2026 1c36350a06712dac38c22d1fe47476dc835fad49 m

  PIPE-2738: Update ticket workflow documentation - add notes on PR process, review expectations, and early merge exceptions for clarity and guidance.

  • docs/source/devel/process/ticket_workflow.md (version 1c36350a06712dac38c22d1fe47476dc835fad49) (diffs)
• 

  Rui Xue 06 May 2026 85363b551f334899f32faa970358a9d07b60ac41 m

  PIPE-2738: Refine heuristics development documentation for clarity and consistency: improve language, structure, and formatting throughout the guide.

  • docs/source/devel/process/heuristics_dev_integration.md (version 85363b551f334899f32faa970358a9d07b60ac41) (diffs)
• 

  Rui Xue 06 May 2026 059bfcfff10bda217ec792b3d919cc06b818f7e5 m

  PIPE-2738: Update Pixi tasks documentation with repository cloning and branch checkout instructions

  • docs/source/devel/setup/pixi_tasks.md (version 059bfcfff10bda217ec792b3d919cc06b818f7e5) (diffs)
• 

  Rui Xue 06 May 2026 bb7783e1bd4b056902ffbb0044b35a1f8ffd4243 m

  PIPE-2738: Rename 'Development Workflow' to 'Git Development Workflow' for clarity and update index to reflect correct order of documentation.

  • docs/source/devel/process/git_dev_workflow.md (version bb7783e1bd4b056902ffbb0044b35a1f8ffd4243) (diffs)
  • docs/source/devel/process/index.md (version bb7783e1bd4b056902ffbb0044b35a1f8ffd4243) (diffs)
• 

  Rui Xue 06 May 2026 cfc820e88735715b8aca3831a93906a0b99b4a86 m

  PIPE-2738: Update ticket workflow documentation: enhance clarity and consistency in state descriptions

  • docs/source/devel/process/ticket_workflow.md (version cfc820e88735715b8aca3831a93906a0b99b4a86) (diffs)
• 

  Rui Xue 06 May 2026 59c216d1f680df3371e20c28fd91e9621c793e48 m

  PIPE-2738: rename develdocmd/ to devel/ and update all references

  • docs/source/devel/codestyle/codestyle.md (version 59c216d1f680df3371e20c28fd91e9621c793e48) (diffs)
  • docs/source/devel/codestyle/index.md (version 59c216d1f680df3371e20c28fd91e9621c793e48) (diffs)
  • docs/source/devel/misc/index.md (version 59c216d1f680df3371e20c28fd91e9621c793e48) (diffs)
  • docs/source/devel/misc/python3_conversion_notes.md (version 59c216d1f680df3371e20c28fd91e9621c793e48) (diffs)
  • docs/source/devel/process/git_dev_workflow.md (version 59c216d1f680df3371e20c28fd91e9621c793e48) (diffs)
  • docs/source/devel/process/heuristics_dev_integration.md (version 59c216d1f680df3371e20c28fd91e9621c793e48) (diffs)
  • docs/source/devel/process/index.md (version 59c216d1f680df3371e20c28fd91e9621c793e48) (diffs)
  • docs/source/devel/process/ticket_workflow.md (version 59c216d1f680df3371e20c28fd91e9621c793e48) (diffs)
  • docs/source/devel/reference/ALMA-Imaging-Workflow.md (version 59c216d1f680df3371e20c28fd91e9621c793e48) (diffs)
  • docs/source/devel/reference/FlaggingTasks.md (version 59c216d1f680df3371e20c28fd91e9621c793e48) (diffs)
  • docs/source/devel/reference/FunctionIODumper.md (version 59c216d1f680df3371e20c28fd91e9621c793e48) (diffs)
  • docs/source/devel/reference/QA_scores.md (version 59c216d1f680df3371e20c28fd91e9621c793e48) (diffs)
  • docs/source/devel/reference/VLA-Imaging-Workflow.md (version 59c216d1f680df3371e20c28fd91e9621c793e48) (diffs)
  • docs/source/devel/reference/VLASS-SE-CONT-Imaging-Workflow.md (version 59c216d1f680df3371e20c28fd91e9621c793e48) (diffs)
  • docs/source/devel/reference/VLASS-SE-CUBE-Imaging-Workflow.md (version 59c216d1f680df3371e20c28fd91e9621c793e48) (diffs)
  • docs/source/devel/reference/callibrary.md (version 59c216d1f680df3371e20c28fd91e9621c793e48) (diffs)
  • docs/source/devel/reference/context_domain_objects.md (version 59c216d1f680df3371e20c28fd91e9621c793e48) (diffs)
  • docs/source/devel/reference/field_parameter.md (version 59c216d1f680df3371e20c28fd91e9621c793e48) (diffs)
  • docs/source/devel/reference/index.md (version 59c216d1f680df3371e20c28fd91e9621c793e48) (diffs)
  • docs/source/devel/reference/logging.md (version 59c216d1f680df3371e20c28fd91e9621c793e48) (diffs)
  • docs/source/devel/reference/parallelization.md (version 59c216d1f680df3371e20c28fd91e9621c793e48) (diffs)
  • docs/source/devel/reference/selfcal_workflow.md (version 59c216d1f680df3371e20c28fd91e9621c793e48) (diffs)
  • docs/source/devel/reference/spectral_windows.md (version 59c216d1f680df3371e20c28fd91e9621c793e48) (diffs)
  • docs/source/devel/reference/task_types.md (version 59c216d1f680df3371e20c28fd91e9621c793e48) (diffs)
  • docs/source/devel/reference/versioning.md (version 59c216d1f680df3371e20c28fd91e9621c793e48) (diffs)
  • docs/source/devel/reference/weblog.md (version 59c216d1f680df3371e20c28fd91e9621c793e48) (diffs)
  • docs/source/devel/setup/conda_setup.rst (version 59c216d1f680df3371e20c28fd91e9621c793e48) (diffs)
  • docs/source/devel/setup/index.md (version 59c216d1f680df3371e20c28fd91e9621c793e48) (diffs)
  • docs/source/devel/setup/monolithic_casa.md (version 59c216d1f680df3371e20c28fd91e9621c793e48) (diffs)
  • docs/source/devel/setup/pixi_tasks.md (version 59c216d1f680df3371e20c28fd91e9621c793e48) (diffs)
  • docs/source/devel/setup/readthedocs.md (version 59c216d1f680df3371e20c28fd91e9621c793e48) (diffs)
  • docs/source/devel/testing/DataType_Testing.md (version 59c216d1f680df3371e20c28fd91e9621c793e48) (diffs)
  • docs/source/devel/testing/comparing_pipeline_executions.md (version 59c216d1f680df3371e20c28fd91e9621c793e48) (diffs)
  • docs/source/devel/testing/index.md (version 59c216d1f680df3371e20c28fd91e9621c793e48) (diffs)
  • docs/source/devel/testing/pipeline_tests.md (version 59c216d1f680df3371e20c28fd91e9621c793e48) (diffs)
  • docs/source/devel/usage/index.md (version 59c216d1f680df3371e20c28fd91e9621c793e48) (diffs)
  • docs/source/devel/usage/recipes.md (version 59c216d1f680df3371e20c28fd91e9621c793e48) (diffs)
  • docs/source/devel/usage/running_pipeline.md (version 59c216d1f680df3371e20c28fd91e9621c793e48) (diffs)
  • docs/source/index.rst (version 59c216d1f680df3371e20c28fd91e9621c793e48) (diffs)
  • docs/source/overview.md (version 59c216d1f680df3371e20c28fd91e9621c793e48) (diffs)
  • docs/source/testing_docs/index.rst (version 59c216d1f680df3371e20c28fd91e9621c793e48) (diffs)
  • docs/source/timeline.md (version 59c216d1f680df3371e20c28fd91e9621c793e48) (diffs)
• 

  Rui Xue 06 May 2026 160b44c37b0f626dfe453d232d6ad4c6ed14f55b m

  PIPE-2738: Update documentation tables for code style, QA scores, Pixi tasks, and overview: enhance formatting and clarity

  • docs/source/develdocmd/codestyle/codestyle.md (version 160b44c37b0f626dfe453d232d6ad4c6ed14f55b) (diffs)
  • docs/source/develdocmd/reference/QA_scores.md (version 160b44c37b0f626dfe453d232d6ad4c6ed14f55b) (diffs)
  • docs/source/develdocmd/setup/pixi_tasks.md (version 160b44c37b0f626dfe453d232d6ad4c6ed14f55b) (diffs)
  • docs/source/overview.md (version 160b44c37b0f626dfe453d232d6ad4c6ed14f55b) (diffs)
• 

  Rui Xue 06 May 2026 3c7943c6bec3c6e913fc54e7abbfa89efbd972af m

  PIPE-2738: Update `conda_setup.rst` and `readthedocs.md`: correct Pixi reference and improve documentation title

  • docs/source/develdocmd/setup/conda_setup.rst (version 3c7943c6bec3c6e913fc54e7abbfa89efbd972af) (diffs)
  • docs/source/develdocmd/setup/readthedocs.md (version 3c7943c6bec3c6e913fc54e7abbfa89efbd972af) (diffs)
• 

  Rui Xue 06 May 2026 e3bd5673fdc1deffbfe846ee3ed5eec8e2550cde m

  PIPE-2738: Update conda_setup.rst: modify warnings and notes for clarity on Conda environment usage

  • docs/source/develdocmd/setup/conda_setup.rst (version e3bd5673fdc1deffbfe846ee3ed5eec8e2550cde) (diffs)
• 

  Rui Xue 06 May 2026 6278bbf9f03dfac5d07f0f491a8528e7a7df026c m

  PIPE-2738: Remove `docstring.md` from code style documentation and update `index.md` accordingly

  • docs/source/develdocmd/codestyle/docstring.md (version 6278bbf9f03dfac5d07f0f491a8528e7a7df026c) (diffs)
  • docs/source/develdocmd/codestyle/index.md (version 6278bbf9f03dfac5d07f0f491a8528e7a7df026c) (diffs)
• 

  Rui Xue 06 May 2026 9e6616aa910cd69c2df6dfa4e312f87273530c91 m

  PIPE-2738: Update `index.rst`: reorder sections to improve navigation and include timeline

  • docs/source/index.rst (version 9e6616aa910cd69c2df6dfa4e312f87273530c91) (diffs)
• 

  Rui Xue 06 May 2026 b5b24190d8e36cc4dcc40868e82e4b5d970c589b m

  PIPE-2738: Update `overview.md`: add details on pipeline run methods and link to usage documentation

  • docs/source/overview.md (version b5b24190d8e36cc4dcc40868e82e4b5d970c589b) (diffs)
• 

  Rui Xue 06 May 2026 467cf5b8a25b31b460505191d2209f7c2a8220f7 m

  PIPE-2738: Update `dependencies.md`; enhance dependency list, add testing and code quality tools, and clarify documentation requirements

  • docs/source/dependencies.md (version 467cf5b8a25b31b460505191d2209f7c2a8220f7) (diffs)
• 

  Rui Xue 06 May 2026 21a5cca38774466c86a207975c800af778e9614f m

  PIPE-2738: Update `index.rst` to include overview section and add new overview.md file

  • docs/source/index.rst (version 21a5cca38774466c86a207975c800af778e9614f) (diffs)
  • docs/source/overview.md (version 21a5cca38774466c86a207975c800af778e9614f) (diffs)
• 

  Rui Xue 06 May 2026 02a331c60f0d31774755b6ec3c997d05766a4ae2 m

  PIPE-2738: dissolve workflows/ section into reference/ and process/
  Move task sequence files (ALMA/VLA/VLASS imaging, selfcal) to
  reference/ and heuristics_dev_integration to process/; remove the
  workflows/ section and its index from the nav.

  • docs/source/develdocmd/process/heuristics_dev_integration.md (version 02a331c60f0d31774755b6ec3c997d05766a4ae2) (diffs)
  • docs/source/develdocmd/process/index.md (version 02a331c60f0d31774755b6ec3c997d05766a4ae2) (diffs)
  • docs/source/develdocmd/reference/ALMA-Imaging-Workflow.md (version 02a331c60f0d31774755b6ec3c997d05766a4ae2) (diffs)
  • docs/source/develdocmd/reference/VLA-Imaging-Workflow.md (version 02a331c60f0d31774755b6ec3c997d05766a4ae2) (diffs)
  • docs/source/develdocmd/reference/VLASS-SE-CONT-Imaging-Workflow.md (version 02a331c60f0d31774755b6ec3c997d05766a4ae2) (diffs)
  • docs/source/develdocmd/reference/VLASS-SE-CUBE-Imaging-Workflow.md (version 02a331c60f0d31774755b6ec3c997d05766a4ae2) (diffs)
  • docs/source/develdocmd/reference/index.md (version 02a331c60f0d31774755b6ec3c997d05766a4ae2) (diffs)
  • docs/source/develdocmd/reference/selfcal_workflow.md (version 02a331c60f0d31774755b6ec3c997d05766a4ae2) (diffs)
  • docs/source/develdocmd/workflows/index.md (version 02a331c60f0d31774755b6ec3c997d05766a4ae2) (diffs)
  • docs/source/index.rst (version 02a331c60f0d31774755b6ec3c997d05766a4ae2) (diffs)
• 

  Rui Xue 06 May 2026 a3e061d8be920d4ded88fd41f180d203cf167298 m

  PIPE-2738: Update readthedocs.md: standardize formatting, enhance clarity, and add local build instructions

  • docs/source/develdocmd/setup/readthedocs.md (version a3e061d8be920d4ded88fd41f180d203cf167298) (diffs)
• 

  Rui Xue 06 May 2026 6f9b56a1bf8bab93bfee68ab3f1673cb81fa323f m

  PIPE-2738: Fix formatting and capitalization in release notes for consistency

  • docs/source/develdocmd/misc/old_releases.md (version 6f9b56a1bf8bab93bfee68ab3f1673cb81fa323f) (diffs)
  • docs/source/releases.md (version 6f9b56a1bf8bab93bfee68ab3f1673cb81fa323f) (diffs)
• 

  Rui Xue 06 May 2026 91edba388201eff643d88036882570d47e7a6a32 m

  PIPE-2738: Refactor timeline documentation: consolidate development phases and remove redundant versioning section

  • docs/source/develdocmd/reference/versioning.md (version 91edba388201eff643d88036882570d47e7a6a32) (diffs)
  • docs/source/timeline.md (version 91edba388201eff643d88036882570d47e7a6a32) (diffs)
• 

  Rui Xue 06 May 2026 7e7f7dfcb87679a6b02648e858af97c12e667665 m

  PIPE-2738: Update PL2026 timeline and milestones with revised delivery dates and version information

  • docs/source/timeline.md (version 7e7f7dfcb87679a6b02648e858af97c12e667665) (diffs)
• 

  Rui Xue 06 May 2026 083ffce96e4f68fb145a372f1fc0493559cdb890 m

  PIPE-2738: Remove Developer Notes and update Miscellaneous section in documentation

  • docs/source/develdocmd/misc/index.md (version 083ffce96e4f68fb145a372f1fc0493559cdb890) (diffs)
  • docs/source/devnotes.rst (version 083ffce96e4f68fb145a372f1fc0493559cdb890) (diffs)
  • docs/source/index.rst (version 083ffce96e4f68fb145a372f1fc0493559cdb890) (diffs)
• 

  Rui Xue 06 May 2026 1ea269039094abb644055d227e47b5e378469daa m

  PIPE-2738: rename building_the_pipeline.md to monolithic_casa.md
  Rename to clarify this covers the monolithic CASA install use case;
  update title and toctree reference in setup/index.md accordingly.

  • docs/source/develdocmd/setup/index.md (version 1ea269039094abb644055d227e47b5e378469daa) (diffs)
  • docs/source/develdocmd/setup/monolithic_casa.md (version 1ea269039094abb644055d227e47b5e378469daa) (diffs)
• 

  Rui Xue 06 May 2026 bf3e7bd9fc967d408c468d0a11a8442267837955 m

  PIPE-2738: move pipeline versioning section to `reference/versioning.md`
  Extract "Pipeline versioning" from building_the_pipeline.md into a
  dedicated reference/versioning.md; add to Reference toctree.

  • docs/source/develdocmd/reference/index.md (version bf3e7bd9fc967d408c468d0a11a8442267837955) (diffs)
  • docs/source/develdocmd/reference/versioning.md (version bf3e7bd9fc967d408c468d0a11a8442267837955) (diffs)
  • docs/source/develdocmd/setup/building_the_pipeline.md (version bf3e7bd9fc967d408c468d0a11a8442267837955) (diffs)
• 

  Rui Xue 06 May 2026 8c7fa1a49667b94cfbbea05a207dad724bc74706 m

  PIPE-2738: Update contribution timeline in README for clarity

  • docs/README.rst (version 8c7fa1a49667b94cfbbea05a207dad724bc74706) (diffs)
• 

  Rui Xue 06 May 2026 afb1ace53529d84398c7f7d9db1005ad13df2a57 m

  PIPE-2738: remove stale `develdocmd/index.md`; move heuristics to `reference/`
  - Delete orphaned develdocmd/index.md (superseded by per-section index pages)
  - Move heuristics/field_parameter.md and heuristics/FlaggingTasks.md to
    develdocmd/reference/ and add to Reference toctree
  - Remove heuristics entries from devnotes.rst

  • docs/source/develdocmd/index.md (version afb1ace53529d84398c7f7d9db1005ad13df2a57) (diffs)
  • docs/source/develdocmd/reference/FlaggingTasks.md (version afb1ace53529d84398c7f7d9db1005ad13df2a57) (diffs)
  • docs/source/develdocmd/reference/context_domain_objects.md (version afb1ace53529d84398c7f7d9db1005ad13df2a57) (diffs)
  • docs/source/develdocmd/reference/field_parameter.md (version afb1ace53529d84398c7f7d9db1005ad13df2a57) (diffs)
  • docs/source/develdocmd/reference/index.md (version afb1ace53529d84398c7f7d9db1005ad13df2a57) (diffs)
  • docs/source/devnotes.rst (version afb1ace53529d84398c7f7d9db1005ad13df2a57) (diffs)
• 

  Rui Xue 05 May 2026 c7793bccfcdb740f758138cc51b0d547d6f9f8d8 m

  PIPE-2738: Fix heading hierarchy and shorten titles in reference section
  - Shorten H1 titles: QA_scores, parallelization (remove redundant "Pipeline"/"Design" words)
  - Fix H3→H2, H4→H3 promotion in context_domain_objects and logging
  - Fix duplicate H1s → H2 in spectral_windows and task_types

  • docs/source/develdocmd/reference/QA_scores.md (version c7793bccfcdb740f758138cc51b0d547d6f9f8d8) (diffs)
  • docs/source/develdocmd/reference/context_domain_objects.md (version c7793bccfcdb740f758138cc51b0d547d6f9f8d8) (diffs)
  • docs/source/develdocmd/reference/logging.md (version c7793bccfcdb740f758138cc51b0d547d6f9f8d8) (diffs)
  • docs/source/develdocmd/reference/parallelization.md (version c7793bccfcdb740f758138cc51b0d547d6f9f8d8) (diffs)
  • docs/source/develdocmd/reference/spectral_windows.md (version c7793bccfcdb740f758138cc51b0d547d6f9f8d8) (diffs)
  • docs/source/develdocmd/reference/task_types.md (version c7793bccfcdb740f758138cc51b0d547d6f9f8d8) (diffs)
• 

  Rui Xue 05 May 2026 c0450abc8a3ddbb6f6a1356292f0b844fdf85568 m

  PIPE-2738: split `DeveloperDocumentation.md` into focused reference articles
  - context_domain_objects: Pipeline context, domain objects, example queries
  - logging: task log files and weblog notification handling
  - weblog: weblog rendering architecture
  - task_types: single/multi-vis, session-aware tasks, stage numbering
  - spectral_windows: SpectralSpec, SpW kinds/mapping, reference antennas
  - Remove DeveloperDocumentation.md (content fully migrated)
  - Shorten FunctionIODumper.md title
  - Update reference/index.md with new entries

  • docs/source/develdocmd/reference/DeveloperDocumentation.md (version c0450abc8a3ddbb6f6a1356292f0b844fdf85568) (diffs)
  • docs/source/develdocmd/reference/FunctionIODumper.md (version c0450abc8a3ddbb6f6a1356292f0b844fdf85568) (diffs)
  • docs/source/develdocmd/reference/context_domain_objects.md (version c0450abc8a3ddbb6f6a1356292f0b844fdf85568) (diffs)
  • docs/source/develdocmd/reference/index.md (version c0450abc8a3ddbb6f6a1356292f0b844fdf85568) (diffs)
  • docs/source/develdocmd/reference/logging.md (version c0450abc8a3ddbb6f6a1356292f0b844fdf85568) (diffs)
  • docs/source/develdocmd/reference/spectral_windows.md (version c0450abc8a3ddbb6f6a1356292f0b844fdf85568) (diffs)
  • docs/source/develdocmd/reference/task_types.md (version c0450abc8a3ddbb6f6a1356292f0b844fdf85568) (diffs)
  • docs/source/develdocmd/reference/weblog.md (version c0450abc8a3ddbb6f6a1356292f0b844fdf85568) (diffs)
• 

  Rui Xue 05 May 2026 b37a5c40a2f86c0ace0bc435873bda8a933601bd m

  PIPE-2738: move callibrary.md and modular.rst; reorder nav sections
  - Move callibrary.md to develdocmd/reference/ and add to Reference toctree
  - Remove modular.rst (superseded by develdocmd/setup/conda_setup.rst)
  - Reorder index.rst: Basics → API Reference → Developer Guide → Misc

  • docs/source/develdocmd/reference/callibrary.md (version b37a5c40a2f86c0ace0bc435873bda8a933601bd) (diffs)
  • docs/source/develdocmd/reference/index.md (version b37a5c40a2f86c0ace0bc435873bda8a933601bd) (diffs)
  • docs/source/index.rst (version b37a5c40a2f86c0ace0bc435873bda8a933601bd) (diffs)
  • docs/source/modular.rst (version b37a5c40a2f86c0ace0bc435873bda8a933601bd) (diffs)
• 

  Rui Xue 05 May 2026 809f1a167c84eaf355610d605d3503d68dfad14c m

  PIPE-2738: Refactor index.rst to reorganize API Reference section and remove duplicate toctree

  • docs/source/index.rst (version 809f1a167c84eaf355610d605d3503d68dfad14c) (diffs)
• 

  Rui Xue 05 May 2026 baa6ee33613b2fbc1251d629bb0c86e41e0ca3c1 m

  PIPE-2738: Update `conda_setup` documentation to reflect changes in environment.yml generation and usage

  • docs/source/develdocmd/setup/conda_setup.rst (version baa6ee33613b2fbc1251d629bb0c86e41e0ca3c1) (diffs)
• 

  Rui Xue 05 May 2026 f81bdea658601af2889ca8d1b3166636d224412f m

  PIPE-2738: Add conda setup documentation and update developer notes structure

  • docs/source/develdocmd/setup/conda_setup.rst (version f81bdea658601af2889ca8d1b3166636d224412f) (diffs)
  • docs/source/develdocmd/setup/index.md (version f81bdea658601af2889ca8d1b3166636d224412f) (diffs)
  • docs/source/devnotes.rst (version f81bdea658601af2889ca8d1b3166636d224412f) (diffs)
• 

  Rui Xue 05 May 2026 0661432afde532e33cd38a18deadebfe996337ff m

  PIPE-2738:  replace absolute RTD links with relative Sphinx references
  Use :doc: roles in README.rst and parallelization.md so internal links
  resolve to the correct version in any ReadTheDocs build.

  • docs/README.rst (version 0661432afde532e33cd38a18deadebfe996337ff) (diffs)
  • docs/source/develdocmd/reference/parallelization.md (version 0661432afde532e33cd38a18deadebfe996337ff) (diffs)
• 

  Rui Xue 05 May 2026 70b3cbf45cc16590eb742eff542cce577f74b5ce m

  PIPE-2738: Add section index pages and restructure Developer Guide nav
  Add index.md to each develdocmd/ subdirectory so the sidebar shows a
  proper two-level Developer Guide hierarchy in furo. Update index.rst to
  list section indexes under a single Developer Guide toctree. Rename
  ticket_workflow_standard.md to ticket_workflow.md and add short
  descriptions for Engineering and Research Request ticket types.

  • docs/source/develdocmd/codestyle/docstring.md (version 70b3cbf45cc16590eb742eff542cce577f74b5ce) (diffs)
  • docs/source/develdocmd/codestyle/index.md (version 70b3cbf45cc16590eb742eff542cce577f74b5ce) (diffs)
  • docs/source/develdocmd/index.md (version 70b3cbf45cc16590eb742eff542cce577f74b5ce) (diffs)
  • docs/source/develdocmd/misc/index.md (version 70b3cbf45cc16590eb742eff542cce577f74b5ce) (diffs)
  • docs/source/develdocmd/process/index.md (version 70b3cbf45cc16590eb742eff542cce577f74b5ce) (diffs)
  • docs/source/develdocmd/process/ticket_workflow.md (version 70b3cbf45cc16590eb742eff542cce577f74b5ce) (diffs)
  • docs/source/develdocmd/reference/index.md (version 70b3cbf45cc16590eb742eff542cce577f74b5ce) (diffs)
  • docs/source/develdocmd/setup/index.md (version 70b3cbf45cc16590eb742eff542cce577f74b5ce) (diffs)
  • docs/source/develdocmd/testing/index.md (version 70b3cbf45cc16590eb742eff542cce577f74b5ce) (diffs)
  • docs/source/develdocmd/usage/index.md (version 70b3cbf45cc16590eb742eff542cce577f74b5ce) (diffs)
  • docs/source/develdocmd/workflows/index.md (version 70b3cbf45cc16590eb742eff542cce577f74b5ce) (diffs)
  • docs/source/index.rst (version 70b3cbf45cc16590eb742eff542cce577f74b5ce) (diffs)
• 

  Rui Xue 05 May 2026 f74aeffefabb4210a9d29a48d28c05c3bcf23100 m

  PIPE-2738: rename ways_to_run_the_pipeline.md to running_pipeline.md
  Update toctree references in index.md and index.rst. Apply fact-check
  fixes and language improvements to the renamed file (h_init params,
  execfile→exec, SDRP→SRDP, starttage typo, grammar).

  • docs/source/develdocmd/index.md (version f74aeffefabb4210a9d29a48d28c05c3bcf23100) (diffs)
  • docs/source/develdocmd/usage/running_pipeline.md (version f74aeffefabb4210a9d29a48d28c05c3bcf23100) (diffs)
  • docs/source/index.rst (version f74aeffefabb4210a9d29a48d28c05c3bcf23100) (diffs)
• 

  Rui Xue 05 May 2026 a106c526bba11aeed5810356639b590f4ccea1df m

  Merge branch 'docs/PIPE-2738-migrate-cli-documentation' of https://open-bitbucket.nrao.edu/scm/pipe/pipeline into docs/PIPE-2738-migrate-cli-documentation
• 

  Rui Xue 05 May 2026 4d227b177e4724481befa0c4827ccb44203c7147 m

  PIPE-2738: restructure develdocmd/ and add developer guides
  Reorganize develdocmd/ into subdirectories (codestyle/, process/,
  setup/, testing/, reference/, workflows/, usage/, misc/). Add index.md
  as master toctree. Add new guides: git_dev_workflow.md,
  ticket_workflow_standard.md (with Mermaid diagrams), and codestyle.md.
  Remove dev_tips.md (content merged into git_dev_workflow.md). Update
  docs/source/index.rst accordingly.

  • docs/source/develdocmd/codestyle/codestyle.md (version 4d227b177e4724481befa0c4827ccb44203c7147) (diffs)
  • docs/source/develdocmd/dev_tips.md (version 4d227b177e4724481befa0c4827ccb44203c7147) (diffs)
  • docs/source/develdocmd/index.md (version 4d227b177e4724481befa0c4827ccb44203c7147) (diffs)
  • docs/source/develdocmd/misc/old_releases.md (version 4d227b177e4724481befa0c4827ccb44203c7147) (diffs)
  • docs/source/develdocmd/misc/python3_conversion_notes.md (version 4d227b177e4724481befa0c4827ccb44203c7147) (diffs)
  • docs/source/develdocmd/process/git_dev_workflow.md (version 4d227b177e4724481befa0c4827ccb44203c7147) (diffs)
  • docs/source/develdocmd/process/ticket_workflow_standard.md (version 4d227b177e4724481befa0c4827ccb44203c7147) (diffs)
  • docs/source/develdocmd/readme.md (version 4d227b177e4724481befa0c4827ccb44203c7147) (diffs)
  • docs/source/develdocmd/reference/DeveloperDocumentation.md (version 4d227b177e4724481befa0c4827ccb44203c7147) (diffs)
  • docs/source/develdocmd/reference/FunctionIODumper.md (version 4d227b177e4724481befa0c4827ccb44203c7147) (diffs)
  • docs/source/develdocmd/reference/QA_scores.md (version 4d227b177e4724481befa0c4827ccb44203c7147) (diffs)
  • docs/source/develdocmd/reference/parallelization.md (version 4d227b177e4724481befa0c4827ccb44203c7147) (diffs)
  • docs/source/develdocmd/setup/building_the_pipeline.md (version 4d227b177e4724481befa0c4827ccb44203c7147) (diffs)
  • docs/source/develdocmd/setup/pixi_tasks.md (version 4d227b177e4724481befa0c4827ccb44203c7147) (diffs)
  • docs/source/develdocmd/setup/readthedocs.md (version 4d227b177e4724481befa0c4827ccb44203c7147) (diffs)
  • docs/source/develdocmd/testing/DataType_Testing.md (version 4d227b177e4724481befa0c4827ccb44203c7147) (diffs)
  • docs/source/develdocmd/testing/comparing_pipeline_executions.md (version 4d227b177e4724481befa0c4827ccb44203c7147) (diffs)
  • docs/source/develdocmd/testing/pipeline_tests.md (version 4d227b177e4724481befa0c4827ccb44203c7147) (diffs)
  • docs/source/develdocmd/usage/recipes.md (version 4d227b177e4724481befa0c4827ccb44203c7147) (diffs)
  • docs/source/develdocmd/usage/ways_to_run_the_pipeline.md (version 4d227b177e4724481befa0c4827ccb44203c7147) (diffs)
  • docs/source/develdocmd/workflows/ALMA-Imaging-Workflow.md (version 4d227b177e4724481befa0c4827ccb44203c7147) (diffs)
  • docs/source/develdocmd/workflows/VLA-Imaging-Workflow.md (version 4d227b177e4724481befa0c4827ccb44203c7147) (diffs)
  • docs/source/develdocmd/workflows/VLASS-SE-CONT-Imaging-Workflow.md (version 4d227b177e4724481befa0c4827ccb44203c7147) (diffs)
  • docs/source/develdocmd/workflows/VLASS-SE-CUBE-Imaging-Workflow.md (version 4d227b177e4724481befa0c4827ccb44203c7147) (diffs)
  • docs/source/develdocmd/workflows/heuristics_dev_integration.md (version 4d227b177e4724481befa0c4827ccb44203c7147) (diffs)
  • docs/source/develdocmd/workflows/selfcal_workflow.md (version 4d227b177e4724481befa0c4827ccb44203c7147) (diffs)
  • docs/source/index.rst (version 4d227b177e4724481befa0c4827ccb44203c7147) (diffs)
• 

  Rui Xue 30 Apr 2026 2f70814717a6e1067ac500024b75d8aadcf2c9f9 m

  PIPE-2738: Update furo dependency version in `requirements_docs.txt`

  • requirements_docs.txt (version 2f70814717a6e1067ac500024b75d8aadcf2c9f9) (diffs)
• 

  Rui Xue 30 Apr 2026 430a5748135b5be6cf5218ffb17e508894267e07 m

  PIPE-2738: Minor docstring updates to improve Sphinx rendering
  Co-authored-by: Copilot <copilot@github.com>

  • pipeline/config.py (version 430a5748135b5be6cf5218ffb17e508894267e07) (diffs)
  • pipeline/domain/datatable.py (version 430a5748135b5be6cf5218ffb17e508894267e07) (diffs)
  • pipeline/domain/measures.py (version 430a5748135b5be6cf5218ffb17e508894267e07) (diffs)
  • pipeline/h/heuristics/tsysnormalize.py (version 430a5748135b5be6cf5218ffb17e508894267e07) (diffs)
  • pipeline/h/tasks/applycal/applycal.py (version 430a5748135b5be6cf5218ffb17e508894267e07) (diffs)
  • pipeline/h/tasks/applycal/renderer.py (version 430a5748135b5be6cf5218ffb17e508894267e07) (diffs)
  • pipeline/h/tasks/common/atmutil_test.py (version 430a5748135b5be6cf5218ffb17e508894267e07) (diffs)
  • pipeline/hif/tasks/analyzealpha/analyzealpha.py (version 430a5748135b5be6cf5218ffb17e508894267e07) (diffs)
  • pipeline/hif/tasks/antpos/antpos.py (version 430a5748135b5be6cf5218ffb17e508894267e07) (diffs)
  • pipeline/hif/tasks/bandpass/common.py (version 430a5748135b5be6cf5218ffb17e508894267e07) (diffs)
  • pipeline/hif/tasks/editimlist/editimlist.py (version 430a5748135b5be6cf5218ffb17e508894267e07) (diffs)
  • pipeline/hif/tasks/makecutoutimages/makecutoutimages.py (version 430a5748135b5be6cf5218ffb17e508894267e07) (diffs)
  • pipeline/hif/tasks/makeimlist/makeimlist.py (version 430a5748135b5be6cf5218ffb17e508894267e07) (diffs)
  • pipeline/hif/tasks/makermsimages/makermsimages.py (version 430a5748135b5be6cf5218ffb17e508894267e07) (diffs)
  • pipeline/hif/tasks/polarization/polarization.py (version 430a5748135b5be6cf5218ffb17e508894267e07) (diffs)
  • pipeline/hif/tasks/refant/referenceantenna.py (version 430a5748135b5be6cf5218ffb17e508894267e07) (diffs)
  • pipeline/hif/tasks/selfcal/selfcal.py (version 430a5748135b5be6cf5218ffb17e508894267e07) (diffs)
  • pipeline/hifa/cli/hifa_gfluxscale.py (version 430a5748135b5be6cf5218ffb17e508894267e07) (diffs)
  • pipeline/hifa/cli/hifa_spwphaseup.py (version 430a5748135b5be6cf5218ffb17e508894267e07) (diffs)
  • pipeline/hifa/tasks/antpos/almaantpos.py (version 430a5748135b5be6cf5218ffb17e508894267e07) (diffs)
  • pipeline/hifa/tasks/bandpassflag/resultobjects.py (version 430a5748135b5be6cf5218ffb17e508894267e07) (diffs)
  • pipeline/hifa/tasks/gfluxscaleflag/resultobjects.py (version 430a5748135b5be6cf5218ffb17e508894267e07) (diffs)
  • pipeline/hifa/tasks/imageprecheck/imageprecheck.py (version 430a5748135b5be6cf5218ffb17e508894267e07) (diffs)
  • pipeline/hifa/tasks/polcal/polcal.py (version 430a5748135b5be6cf5218ffb17e508894267e07) (diffs)
  • pipeline/hifa/tasks/polcalflag/polcalflag.py (version 430a5748135b5be6cf5218ffb17e508894267e07) (diffs)
  • pipeline/hifa/tasks/renorm/renorm.py (version 430a5748135b5be6cf5218ffb17e508894267e07) (diffs)
  • pipeline/hifa/tasks/sessionrefant/resultobjects.py (version 430a5748135b5be6cf5218ffb17e508894267e07) (diffs)
  • pipeline/hifa/tasks/targetflag/targetflag.py (version 430a5748135b5be6cf5218ffb17e508894267e07) (diffs)
  • pipeline/hifv/tasks/analyzestokescubes/analyzestokescubes.py (version 430a5748135b5be6cf5218ffb17e508894267e07) (diffs)
  • pipeline/hifv/tasks/circfeedpolcal/circfeedpolcal.py (version 430a5748135b5be6cf5218ffb17e508894267e07) (diffs)
  • pipeline/hifv/tasks/fixpointing/fixpointing.py (version 430a5748135b5be6cf5218ffb17e508894267e07) (diffs)
  • pipeline/hifv/tasks/flagging/checkflag.py (version 430a5748135b5be6cf5218ffb17e508894267e07) (diffs)
  • pipeline/hifv/tasks/flagging/flagcal.py (version 430a5748135b5be6cf5218ffb17e508894267e07) (diffs)
  • pipeline/hifv/tasks/flagging/flagtargetsdata.py (version 430a5748135b5be6cf5218ffb17e508894267e07) (diffs)
  • pipeline/hifv/tasks/plotsummary/plotsummary.py (version 430a5748135b5be6cf5218ffb17e508894267e07) (diffs)
  • pipeline/hifv/tasks/restorepims/restorepims.py (version 430a5748135b5be6cf5218ffb17e508894267e07) (diffs)
  • pipeline/hifv/tasks/selfcal/selfcal.py (version 430a5748135b5be6cf5218ffb17e508894267e07) (diffs)
  • pipeline/hifv/tasks/syspower/syspower.py (version 430a5748135b5be6cf5218ffb17e508894267e07) (diffs)
  • pipeline/hsd/cli/hsd_baseline.py (version 430a5748135b5be6cf5218ffb17e508894267e07) (diffs)
  • pipeline/hsd/cli/hsd_imaging.py (version 430a5748135b5be6cf5218ffb17e508894267e07) (diffs)
  • pipeline/hsd/cli/hsd_tsysflag.py (version 430a5748135b5be6cf5218ffb17e508894267e07) (diffs)
  • pipeline/hsd/tasks/k2jycal/k2jycal.py (version 430a5748135b5be6cf5218ffb17e508894267e07) (diffs)
  • pipeline/infrastructure/callibrary.py (version 430a5748135b5be6cf5218ffb17e508894267e07) (diffs)
  • pipeline/qa/__init__.py (version 430a5748135b5be6cf5218ffb17e508894267e07) (diffs)
• 

  Rui Xue 30 Apr 2026 a2a2103344f5faccccb6a0a56d591f37dd0c4829 m

  Merge branch 'docs/PIPE-2738-migrate-cli-documentation' of https://open-bitbucket.nrao.edu/scm/pipe/pipeline into docs/PIPE-2738-migrate-cli-documentation
• 

  Rui Xue 30 Apr 2026 4c889f90c32d031e339c199c62b511561341fe4d m

  PIPE-2738: Remove furo dependency from PyPI dependencies in pyproject.toml

  • pyproject.toml (version 4c889f90c32d031e339c199c62b511561341fe4d) (diffs)
• 

  Rui Xue 30 Apr 2026 5db9e589c922d1069cd2733912c967c2896e75e2 m

  PIPE-2738: Refactor documentation structure and update Sphinx configuration for improved clarity and organization
  Co-authored-by: Copilot <copilot@github.com>

  • docs/Makefile (version 5db9e589c922d1069cd2733912c967c2896e75e2) (diffs)
  • docs/source/apisummary.rst (version 5db9e589c922d1069cd2733912c967c2896e75e2) (diffs)
  • docs/source/conf.py (version 5db9e589c922d1069cd2733912c967c2896e75e2) (diffs)
  • docs/source/develdocmd/FunctionIODumper.md (version 5db9e589c922d1069cd2733912c967c2896e75e2) (diffs)
  • docs/source/examples/test2.rst (version 5db9e589c922d1069cd2733912c967c2896e75e2) (diffs)
  • docs/source/index.rst (version 5db9e589c922d1069cd2733912c967c2896e75e2) (diffs)
  • docs/source/inheritance.rst (version 5db9e589c922d1069cd2733912c967c2896e75e2) (diffs)
  • docs/source/testing_docs/automated_testing.rst (version 5db9e589c922d1069cd2733912c967c2896e75e2) (diffs)
• 

  Rui Xue 30 Apr 2026 9dc0597702e242dd7e17298c74ba8d33b3f84a82 m

  PIPE-2738: Migrate CLI documentation and update automodapi templates
  Co-authored-by: Copilot <copilot@github.com>

  • docs/source/_templates/autosummary_core/class.rst (version 9dc0597702e242dd7e17298c74ba8d33b3f84a82) (diffs)
  • docs/source/_templates/custom-module-template.rst (version 9dc0597702e242dd7e17298c74ba8d33b3f84a82) (diffs)
  • docs/source/automodapi/pipeline.domain.rst (version 9dc0597702e242dd7e17298c74ba8d33b3f84a82) (diffs)
  • docs/source/automodapi/pipeline.infrastructure.callibrary.rst (version 9dc0597702e242dd7e17298c74ba8d33b3f84a82) (diffs)
  • docs/source/automodapi/pipeline.infrastructure.imagelibrary.rst (version 9dc0597702e242dd7e17298c74ba8d33b3f84a82) (diffs)
  • docs/source/automodapi/pipeline.infrastructure.launcher.rst (version 9dc0597702e242dd7e17298c74ba8d33b3f84a82) (diffs)
  • docs/source/automodapi/pipeline.infrastructure.project.rst (version 9dc0597702e242dd7e17298c74ba8d33b3f84a82) (diffs)
  • docs/source/automodapi/pipeline.infrastructure.utils.rst (version 9dc0597702e242dd7e17298c74ba8d33b3f84a82) (diffs)
  • docs/source/automodapi/pipeline.infrastructure.vdp.rst (version 9dc0597702e242dd7e17298c74ba8d33b3f84a82) (diffs)
  • docs/source/automodapi/pipeline.qa.rst (version 9dc0597702e242dd7e17298c74ba8d33b3f84a82) (diffs)
  • docs/source/automodapi_src/pipeline.h.tasks.rst (version 9dc0597702e242dd7e17298c74ba8d33b3f84a82) (diffs)
  • docs/source/automodapi_src/pipeline.hif.tasks.rst (version 9dc0597702e242dd7e17298c74ba8d33b3f84a82) (diffs)
  • docs/source/automodapi_src/pipeline.hifa.tasks.rst (version 9dc0597702e242dd7e17298c74ba8d33b3f84a82) (diffs)
  • docs/source/automodapi_src/pipeline.hifv.tasks.rst (version 9dc0597702e242dd7e17298c74ba8d33b3f84a82) (diffs)
  • docs/source/automodapi_src/pipeline.hsd.tasks.rst (version 9dc0597702e242dd7e17298c74ba8d33b3f84a82) (diffs)
  • docs/source/automodapi_src/pipeline.hsdn.tasks.rst (version 9dc0597702e242dd7e17298c74ba8d33b3f84a82) (diffs)
• 

  Rui Xue 30 Apr 2026 7c29a43ac6bd87545a807caf879c1f2010891f94 m

  PIPE-2738: Add custom CSS for left sidebar width in Furo theme

  • docs/source/_static/custom_theme.css (version 7c29a43ac6bd87545a807caf879c1f2010891f94) (diffs)
• 

  Rui Xue 30 Apr 2026 faa249fa1f06bfb20d44d89fed9ad37bd6e62344 m

  Merge branch 'docs/PIPE-2738-migrate-cli-documentation' of https://open-bitbucket.nrao.edu/scm/pipe/pipeline into docs/PIPE-2738-migrate-cli-documentation
• 

  Rui Xue 30 Apr 2026 a21c02b871e653c487f544f34f58ad809f29fb52 m

  PIPE-2738: Update autodoc_mock_imports to include additional dependencies for documentation generation

  • docs/source/conf.py (version a21c02b871e653c487f544f34f58ad809f29fb52) (diffs)
• 

  Rui Xue 29 Apr 2026 91b14712d08dcddea8d7b52965a41652c9d05eea m

  Merge remote-tracking branch 'origin/main' into `docs/PIPE-2738-migrate-cli-documentation`
• 

  Rui Xue 29 Apr 2026 e2ea0d1c03ddf99b1f6730240a5366276747ee61 m

  PIPE-2738: Migrate documentation build tasks to new section in `pyproject.toml`

  • pyproject.toml (version e2ea0d1c03ddf99b1f6730240a5366276747ee61) (diffs)
• 

  Rui Xue 29 Apr 2026 27d331013fac8af67e315cfc14cf8eac930a3b9c m

  PIPE-2738: Update release documentation and styling for smaller font tables

  • docs/source/_static/custom_theme.css (version 27d331013fac8af67e315cfc14cf8eac930a3b9c) (diffs)
  • docs/source/releases.md (version 27d331013fac8af67e315cfc14cf8eac930a3b9c) (diffs)
• 

  Rui Xue 24 Apr 2026 dcc8247f022a27af11fb64965c8b28a1a8261e36 m

  Merge branch 'main' into docs/PIPE-2738-migrate-cli-documentation
• 

  Rui Xue 02 Apr 2026 9f6e21ad7c18fae88e219c4a39e695f847716fff m

  Merge remote-tracking branch 'origin/main' into docs/PIPE-2738-migrate-cli-documentation
• 

  Rui Xue 02 Apr 2026 8e9abdff5c34cbfd85a36de90d8b7aaf26a51e7b m

  PIPE-2738: Update timeline documentation with tentative ALMA testing schedule and adjust milestone dates

  • docs/source/timeline.md (version 8e9abdff5c34cbfd85a36de90d8b7aaf26a51e7b) (diffs)
• 

  Rui Xue 10 Mar 2026 c9ccd370c5dc564af7ab8feea8a5ea832b8f4e10 m

  PIPE-2738: Update minimum macOS runtime requirement to 15.0 for pixi compatibility

  • pyproject.toml (version c9ccd370c5dc564af7ab8feea8a5ea832b8f4e10) (diffs)
• 

  Rui Xue 10 Mar 2026 620de956e9f6f76f85e872cb3ed17b8279717ee9 m

  PIPE-2738: Update platform compatibility for casa675-py313 and adjust bdsf dependency for macOS

  • .github/workflows/test-unit-pixi.yml (version 620de956e9f6f76f85e872cb3ed17b8279717ee9) (diffs)
  • pyproject.toml (version 620de956e9f6f76f85e872cb3ed17b8279717ee9) (diffs)
  • requirements.txt (version 620de956e9f6f76f85e872cb3ed17b8279717ee9) (diffs)
• 

  Rui Xue 10 Mar 2026 8b797c5ee0d4663dcc3181070a83253b9e125250 m

  PIPE-2738: Fix `__all__` type in direction_utils
  Change `__all__` from set to list in
  `hsd/tasks/common/direction_utils.py`. Sphinx 9.1
  requires `__all__` to be a list or tuple, and the set
  literal caused autosummary to crash with a ValueError
  during recursive doc generation.

  • pipeline/hsd/tasks/common/direction_utils.py (version 8b797c5ee0d4663dcc3181070a83253b9e125250) (diffs)
• 

  Rui Xue 10 Mar 2026 31359bcd28b621fcaa2ebcef6e4f8f6e53c9ef53 m

  PIPE-2738: Update `casa675-py313` feature to include solve-group for consistency

  • pyproject.toml (version 31359bcd28b621fcaa2ebcef6e4f8f6e53c9ef53) (diffs)