Pipeline

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  Ryan Loomis 10 Jul 2026 aa076a32b10279281486fea98646ac5b833c3411

  Pull request #1880: PIPE-3151 add hif findroi to alma imaging recipes
  Merge in PIPE/pipeline from PIPE-3151-add-hif-findroi-to-alma-imaging-recipes to main
  
  * commit '3c0ffbf59499ce302a08d67209d7aafe1c073bdf': (21 commits)
    PIPE-3151: add hif_findroi to ALMA imaging recipes
    PIPE-3136: export hif_findroi tar via aux products
    PIPE-3149: add ROI.dat placeholders for empty SPWs
    PIPE-3149: keep only stitched mosaic cubes in products
    PIPE-3149: filter mixed-array findroi imaging inputs
    PIPE-3149: clean up hif_findroi metadata and tar accounting
    Switch findroi handoff to tar
    Rename findroi cube outputs and enable saving
    Rename findroi products and schema keys
    Package findroi outputs in workdir tarball
    Remove overabstraction in findroi
    Trim hif_findroi public surface
    Align findroi OUS prefix with imaging tasks
    Inline remaining findroi metadata helpers
    Inline findroi MOUS prefix lookup
    Fix findroi OUS prefix source
    Remove findroi fallback metadata paths
    PIPEREQ-414 Fix findroi plot import
    PIPEREQ-414 Refactor findroi into hif task
    Fix hifa_findroi task contract
    ...
• 

  Dirk Muders 10 Jul 2026 3c0ffbf59499ce302a08d67209d7aafe1c073bdf

  Merge remote-tracking branch 'origin/main' into PIPE-3151-add-hif-findroi-to-alma-imaging-recipes
• 

  ryanaloomis <ryan.a.loomis@gmail.com> 10 Jul 2026 9ad4b0238b9d32c0e7075ff669c618b1f178657c m

  PIPE-3151: add hif_findroi to ALMA imaging recipes

  • pipeline/recipes/procedure_hifa_calimage.xml (version 9ad4b0238b9d32c0e7075ff669c618b1f178657c) (diffs)
  • pipeline/recipes/procedure_hifa_calimage_diffgain.xml (version 9ad4b0238b9d32c0e7075ff669c618b1f178657c) (diffs)
  • pipeline/recipes/procedure_hifa_image.xml (version 9ad4b0238b9d32c0e7075ff669c618b1f178657c) (diffs)
  • pipeline/recipes/procedure_hifa_polcalimage.xml (version 9ad4b0238b9d32c0e7075ff669c618b1f178657c) (diffs)
  • pipeline/recipes/procedure_hifa_polcalimage_totalintensity.xml (version 9ad4b0238b9d32c0e7075ff669c618b1f178657c) (diffs)
  • pipeline/recipes/procedure_hifa_polimage.xml (version 9ad4b0238b9d32c0e7075ff669c618b1f178657c) (diffs)
  • pipeline/recipes/template_hifa_cubeimage.xml (version 9ad4b0238b9d32c0e7075ff669c618b1f178657c) (diffs)
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  ryanaloomis <ryan.a.loomis@gmail.com> 10 Jul 2026 0dbae07994d13e5f33c9d8aeaa9e310999ef93b9 m

  Merge remote-tracking branch 'origin/PIPE-3131_Use_intrinsic_hif_makeimlist_call_in_hif_findcont' into PIPE-3151-add-hif-findroi-to-alma-imaging-recipes
  # Conflicts:
  #        pipeline/infrastructure/utils/imaging.py
• 

  ryanaloomis <ryan.a.loomis@gmail.com> 09 Jul 2026 504d1945cc5abe4b3fb50c589f3217f745d6c627 m

  PIPE-3136: export hif_findroi tar via aux products

  • pipeline/h/tasks/exportdata/exportdata.py (version 504d1945cc5abe4b3fb50c589f3217f745d6c627) (diffs)
  • pipeline/infrastructure/launcher.py (version 504d1945cc5abe4b3fb50c589f3217f745d6c627) (diffs)
• 

  ryanaloomis <ryan.a.loomis@gmail.com> 09 Jul 2026 383e1e90ac20c7a88cefa1ae4d4bce1648bb272d m

  PIPE-3149: add ROI.dat placeholders for empty SPWs

  • pipeline/hif/heuristics/findroi.py (version 383e1e90ac20c7a88cefa1ae4d4bce1648bb272d) (diffs)
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  ryanaloomis <ryan.a.loomis@gmail.com> 09 Jul 2026 0ea63a99b008905659616b9d0e5c2aa86199346a m

  PIPE-3149: keep only stitched mosaic cubes in products

  • pipeline/hif/heuristics/findroi.py (version 0ea63a99b008905659616b9d0e5c2aa86199346a) (diffs)
• 

  ryanaloomis <ryan.a.loomis@gmail.com> 09 Jul 2026 9d91d77ed41057494875ab95d5214486f71a7572 m

  PIPE-3149: filter mixed-array findroi imaging inputs

  • pipeline/hif/heuristics/findroi.py (version 9d91d77ed41057494875ab95d5214486f71a7572) (diffs)
• 

  ryanaloomis <ryan.a.loomis@gmail.com> 09 Jul 2026 438260f919e73889730c3c1322021d4a295dc420 m

  PIPE-3149: clean up hif_findroi metadata and tar accounting

  • pipeline/hif/cli/hif_findroi.py (version 438260f919e73889730c3c1322021d4a295dc420) (diffs)
  • pipeline/hif/heuristics/findroi.py (version 438260f919e73889730c3c1322021d4a295dc420) (diffs)
• 

  ryanaloomis <ryan.a.loomis@gmail.com> 02 Jul 2026 882a274145f8c53aaddc4766b86e48d2dd599cd7 m

  Switch findroi handoff to tar

  • pipeline/hif/heuristics/findroi.py (version 882a274145f8c53aaddc4766b86e48d2dd599cd7) (diffs)
  • pipeline/hif/tasks/findroi/findroi.py (version 882a274145f8c53aaddc4766b86e48d2dd599cd7) (diffs)
  • pipeline/hif/tasks/findroi/renderer.py (version 882a274145f8c53aaddc4766b86e48d2dd599cd7) (diffs)
  • pipeline/hif/tasks/findroi/resultobjects.py (version 882a274145f8c53aaddc4766b86e48d2dd599cd7) (diffs)
• 

  ryanaloomis <ryan.a.loomis@gmail.com> 02 Jul 2026 95a60d0e578f0b09ce57e86dd3ff86b9571ebe11 m

  Rename findroi cube outputs and enable saving

  • pipeline/hif/heuristics/findroi.py (version 95a60d0e578f0b09ce57e86dd3ff86b9571ebe11) (diffs)
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  ryanaloomis <ryan.a.loomis@gmail.com> 02 Jul 2026 06fa9ebda4d36f189f2cffa6a79d4488581562bb m

  Rename findroi products and schema keys

  • pipeline/hif/heuristics/findroi.py (version 06fa9ebda4d36f189f2cffa6a79d4488581562bb) (diffs)
  • pipeline/hif/tasks/findroi/plots.py (version 06fa9ebda4d36f189f2cffa6a79d4488581562bb) (diffs)
• 

  ryanaloomis <ryan.a.loomis@gmail.com> 02 Jul 2026 999cb9ae81fb0a22a2968ee80c65ba8f4ce67975 m

  Package findroi outputs in workdir tarball

  • pipeline/hif/heuristics/findroi.py (version 999cb9ae81fb0a22a2968ee80c65ba8f4ce67975) (diffs)
  • pipeline/hif/tasks/findroi/renderer.py (version 999cb9ae81fb0a22a2968ee80c65ba8f4ce67975) (diffs)
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  ryanaloomis <ryan.a.loomis@gmail.com> 02 Jul 2026 e185fb041e793f2635fa6d3d34434acc9631e555 m

  Remove overabstraction in findroi

  • pipeline/hif/heuristics/findroi.py (version e185fb041e793f2635fa6d3d34434acc9631e555) (diffs)
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  ryanaloomis <ryan.a.loomis@gmail.com> 02 Jul 2026 91507518d2287fca904c330f2a22966d46bca328 m

  Trim hif_findroi public surface

  • pipeline/hif/cli/hif_findroi.py (version 91507518d2287fca904c330f2a22966d46bca328) (diffs)
  • pipeline/hif/heuristics/findroi.py (version 91507518d2287fca904c330f2a22966d46bca328) (diffs)
  • pipeline/hif/tasks/findroi/findroi.py (version 91507518d2287fca904c330f2a22966d46bca328) (diffs)
• 

  ryanaloomis <ryan.a.loomis@gmail.com> 01 Jul 2026 913624ff1849e5aa033ee4f4349118260f9790b6 m

  Align findroi OUS prefix with imaging tasks

  • pipeline/hif/heuristics/findroi.py (version 913624ff1849e5aa033ee4f4349118260f9790b6) (diffs)
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  ryanaloomis <ryan.a.loomis@gmail.com> 01 Jul 2026 74e8ee297b685dcbc16ccf8e70ddf58898156e68 m

  Inline remaining findroi metadata helpers

  • pipeline/hif/heuristics/findroi.py (version 74e8ee297b685dcbc16ccf8e70ddf58898156e68) (diffs)
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  ryanaloomis <ryan.a.loomis@gmail.com> 01 Jul 2026 233f840644ce99b203641c20d589627e1771fc49 m

  Inline findroi MOUS prefix lookup

  • pipeline/hif/heuristics/findroi.py (version 233f840644ce99b203641c20d589627e1771fc49) (diffs)
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  ryanaloomis <ryan.a.loomis@gmail.com> 01 Jul 2026 3b38fc79682a7372b9f2f19c1f197c1c04661e78 m

  Fix findroi OUS prefix source

  • pipeline/hif/heuristics/findroi.py (version 3b38fc79682a7372b9f2f19c1f197c1c04661e78) (diffs)
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  ryanaloomis <ryan.a.loomis@gmail.com> 01 Jul 2026 797f5b2e04a350cc0d3e3b7ddc434bfca5b6120d m

  Remove findroi fallback metadata paths

  • pipeline/hif/heuristics/findroi.py (version 797f5b2e04a350cc0d3e3b7ddc434bfca5b6120d) (diffs)
  • pipeline/infrastructure/utils/imaging.py (version 797f5b2e04a350cc0d3e3b7ddc434bfca5b6120d) (diffs)
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  ryanaloomis <ryan.a.loomis@gmail.com> 30 Jun 2026 0916f2a0fe06ab2d8945a1c96b3c952304eb8ede m

  PIPEREQ-414 Fix findroi plot import

  • pipeline/hif/heuristics/findroi.py (version 0916f2a0fe06ab2d8945a1c96b3c952304eb8ede) (diffs)
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  ryanaloomis <ryan.a.loomis@gmail.com> 29 Jun 2026 58bfcd5fb3458383b10b7495e53d38b9c2703c7b m

  PIPEREQ-414 Refactor findroi into hif task

  • pipeline/hif/cli/__init__.py (version 58bfcd5fb3458383b10b7495e53d38b9c2703c7b) (diffs)
  • pipeline/hif/cli/hif_findroi.py (version 58bfcd5fb3458383b10b7495e53d38b9c2703c7b) (diffs)
  • pipeline/hif/heuristics/findroi.py (version 58bfcd5fb3458383b10b7495e53d38b9c2703c7b) (diffs)
  • pipeline/hif/tasks/__init__.py (version 58bfcd5fb3458383b10b7495e53d38b9c2703c7b) (diffs)
  • pipeline/hif/tasks/findroi/__init__.py (version 58bfcd5fb3458383b10b7495e53d38b9c2703c7b) (diffs)
  • pipeline/hif/tasks/findroi/findroi.py (version 58bfcd5fb3458383b10b7495e53d38b9c2703c7b) (diffs)
  • pipeline/hif/tasks/findroi/plots.py (version 58bfcd5fb3458383b10b7495e53d38b9c2703c7b) (diffs)
  • pipeline/hif/tasks/findroi/qa.py (version 58bfcd5fb3458383b10b7495e53d38b9c2703c7b) (diffs)
  • pipeline/hif/tasks/findroi/renderer.py (version 58bfcd5fb3458383b10b7495e53d38b9c2703c7b) (diffs)
  • pipeline/hif/tasks/findroi/resultobjects.py (version 58bfcd5fb3458383b10b7495e53d38b9c2703c7b) (diffs)
  • pipeline/hif/templates/findroi.mako (version 58bfcd5fb3458383b10b7495e53d38b9c2703c7b) (diffs)
  • pipeline/hifa/cli/__init__.py (version 58bfcd5fb3458383b10b7495e53d38b9c2703c7b) (diffs)
  • pipeline/hifa/cli/hifa_findroi.py (version 58bfcd5fb3458383b10b7495e53d38b9c2703c7b) (diffs)
  • pipeline/hifa/tasks/__init__.py (version 58bfcd5fb3458383b10b7495e53d38b9c2703c7b) (diffs)
  • pipeline/infrastructure/utils/imaging.py (version 58bfcd5fb3458383b10b7495e53d38b9c2703c7b) (diffs)
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  ryanaloomis <ryan.a.loomis@gmail.com> 14 May 2026 6310d0d296ec060b58658764ee8597ce9364d114 m

  Fix hifa_findroi task contract

  • pipeline/hifa/tasks/findroi/findroi.py (version 6310d0d296ec060b58658764ee8597ce9364d114) (diffs)
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  ryanaloomis <ryan.a.loomis@gmail.com> 12 May 2026 424e2e1d605e599c5c6b12821cd55387154d2421 m

  Initial hifa_findroi stage implementation

  • pipeline/hifa/cli/__init__.py (version 424e2e1d605e599c5c6b12821cd55387154d2421) (diffs)
  • pipeline/hifa/cli/hifa_findroi.py (version 424e2e1d605e599c5c6b12821cd55387154d2421) (diffs)
  • pipeline/hifa/tasks/__init__.py (version 424e2e1d605e599c5c6b12821cd55387154d2421) (diffs)
  • pipeline/hifa/tasks/findroi/__init__.py (version 424e2e1d605e599c5c6b12821cd55387154d2421) (diffs)
  • pipeline/hifa/tasks/findroi/findroi.py (version 424e2e1d605e599c5c6b12821cd55387154d2421) (diffs)
  • pipeline/hifa/tasks/findroi/plots.py (version 424e2e1d605e599c5c6b12821cd55387154d2421) (diffs)
  • pipeline/hifa/tasks/findroi/qa.py (version 424e2e1d605e599c5c6b12821cd55387154d2421) (diffs)
  • pipeline/hifa/tasks/findroi/renderer.py (version 424e2e1d605e599c5c6b12821cd55387154d2421) (diffs)
  • pipeline/hifa/tasks/findroi/resultobjects.py (version 424e2e1d605e599c5c6b12821cd55387154d2421) (diffs)
  • pipeline/hifa/templates/findroi.mako (version 424e2e1d605e599c5c6b12821cd55387154d2421) (diffs)