Build: #100 was successful Rebuilt by Andrew McNichols
Code commits
Pipeline
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Rui Xue fb50ffeb80b378fda7ec498eff8147372a29d87b
Pull request #1982: PIPE-3211: update GitHub Actions workflows, add git-resilient helper, and fix doc badge clicks
Merge in PIPE/pipeline from PIPE-3211-update-gh-workflows to main
* commit '2271c07d0be45594b7856f9734d4ee9d92b7ae73':
PIPE-3211: modernize GitHub Actions workflows, add git-resilient helper, and fix doc badge clicks -
Rui Xue 2271c07d0be45594b7856f9734d4ee9d92b7ae73
PIPE-3211: modernize GitHub Actions workflows, add git-resilient helper, and fix doc badge clicks
- Add .github/scripts/git-resilient.sh with in-memory tuning, retries, and native HTTP timeouts
- Modernize workflows to Pixi, align artifact actions to @v7, and upgrade to checkout@v5 / cache@v5
- Make Bitbucket scheduled sync resilient to on-prem server downtime
- Remove legacy conda workflows (build-gh-pages.yml, env-setup-run-template.yml, test-unit.yml)
- Unify Pages deployment under official actions and remove third-party peaceiris/actions-gh-pages
- Fix Viewer.js lightbox hijacking on Sphinx doc badges and document LaTeX prerequisites- .github/scripts/git-resilient.sh (version 2271c07d0be45594b7856f9734d4ee9d92b7ae73) (diffs)
- .github/workflows/build-gh-pages-pixi.yml (version 2271c07d0be45594b7856f9734d4ee9d92b7ae73) (diffs)
- .github/workflows/build-gh-pages.yml (version 2271c07d0be45594b7856f9734d4ee9d92b7ae73) (diffs)
- .github/workflows/env-setup-run-template-pixi.yml (version 2271c07d0be45594b7856f9734d4ee9d92b7ae73) (diffs)
- .github/workflows/env-setup-run-template.yml (version 2271c07d0be45594b7856f9734d4ee9d92b7ae73) (diffs)
- .github/workflows/sync-from-open-bitbucket.yml (version 2271c07d0be45594b7856f9734d4ee9d92b7ae73) (diffs)
- .github/workflows/test-unit-pixi.yml (version 2271c07d0be45594b7856f9734d4ee9d92b7ae73) (diffs)
- .github/workflows/test-unit.yml (version 2271c07d0be45594b7856f9734d4ee9d92b7ae73) (diffs)
- docs/source/_static/custom_theme.css (version 2271c07d0be45594b7856f9734d4ee9d92b7ae73) (diffs)
- docs/source/_static/viewer_init.js (version 2271c07d0be45594b7856f9734d4ee9d92b7ae73) (diffs)
- docs/source/devel/setup/readthedocs.md (version 2271c07d0be45594b7856f9734d4ee9d92b7ae73) (diffs)
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Rui Xue 363f65f480c16c4b39c6e96e23983877248f687f
Pull request #1981: PIPE-3211: clean up pyproject.toml by removing unnecessary line breaks and comments
Merge in PIPE/pipeline from PIPE-3211-followup to main
* commit 'bfd57924b3a31bacb83ed99ab683e92b53822bfc':
PIPE-3211: clean up pyproject.toml by removing unnecessary line breaks and comments -
Rui Xue bfd57924b3a31bacb83ed99ab683e92b53822bfc
PIPE-3211: clean up pyproject.toml by removing unnecessary line breaks and comments
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Rui Xue 62d0284b0eb2bfe226c950f2020117c260320c51
Pull request #1973: PIPE-3211
Merge in PIPE/pipeline from PIPE-3211 to main
* commit '050c7ff9597ba670223e7d6e55ce1419bd0f2fc6':
PIPE-3251/PIPE-3252: clarify parallel imaging docstrings
PIPE-3211: update `astropy` dependency to version 8.0
PIPE-3211: remove stale test procedures for `hifa_cal_tier0` and `hifa_calimage_tier0`; should use `scripts/procedure_add_parallel.py` instead.
PIPE-3211: single-source dynamic version from `pipeline._version.py`
PIPE-3211: define CASA aliases upfront and add export option for dependencies
PIPE-3211: update CI/CD workflow trigger path filters
PIPE-3211: prune redundant six dependency and obsolete egg package data
PIPE-3211: prune obsolete and unused documentation dependencies
PIPE-3211: prune redundant and obsolete development dependencies
PIPE-3211: bump runtime dependencies in `pyproject.toml` and update `pixi.lock`
PIPE-3211: fold requirements into `pyproject.toml` and add CASA dependency installer
PIPE-3211: migrate dynamic versioning to in-tree build backend and remove `setup.py`
PIPE-3211: add documentation for weblog resources and developer scripts
PIPE-3211: decouple weblog asset minification from `setup.py`
PIPE-3211/PIPE-2930: Remove duplicated test tasks from `pyproject.toml` and update Numpy version constraint in `requirements.txt` -
Rui Xue 050c7ff9597ba670223e7d6e55ce1419bd0f2fc6
PIPE-3251/PIPE-3252: clarify parallel imaging docstrings
- Clarify `parallel` docstrings in makeimlist, checkproductsize, and imageprecheck: document automatic fallback to serial imager (PySynthesisImager) when parallel=True in serial sessions, and remove references to tclean(parallel=True).
- Add note in makeimages docstring citing CASAdocs regarding CASA built-in tclean parallelization behavior for spectral cubes vs. continuum.- pipeline/hif/heuristics/imageparams_vlass_single_epoch_continuum.py (version 050c7ff9597ba670223e7d6e55ce1419bd0f2fc6) (diffs)
- pipeline/hif/tasks/checkproductsize/checkproductsize.py (version 050c7ff9597ba670223e7d6e55ce1419bd0f2fc6) (diffs)
- pipeline/hif/tasks/makeimages/makeimages.py (version 050c7ff9597ba670223e7d6e55ce1419bd0f2fc6) (diffs)
- pipeline/hif/tasks/makeimlist/makeimlist.py (version 050c7ff9597ba670223e7d6e55ce1419bd0f2fc6) (diffs)
- pipeline/hifa/tasks/imageprecheck/imageprecheck.py (version 050c7ff9597ba670223e7d6e55ce1419bd0f2fc6) (diffs)
- pixi.lock (version 050c7ff9597ba670223e7d6e55ce1419bd0f2fc6) (diffs)
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Rui Xue 7d3b841391659d55a82dd233871517f4b0d2dd5a
PIPE-3211: define CASA aliases upfront and add export option for dependencies
- Move CASA environment shortcuts and aliases (`casa_pip`, `casa_python`)
upfront under Prerequisites in monolithic CASA documentation.
- Add `--export [FILE]` (`-o`) option to `scripts/install_dependencies.py`
to extract dependencies in requirements.txt format.
- Add TOML parser fallback (tomllib -> tomli -> pip._vendor.tomli) in
`scripts/install_dependencies.py` for Python < 3.11 (monolithic CASA) support.
- Document standalone Python 3.11+ tomllib one-liners with standard line wrapping.
- Clarify test execution commands in `daskhelpers_test.py` docstring.
- Cross-reference monolithic CASA environment setup from pytest reference guide.- docs/source/devel/setup/monolithic_casa.md (version 7d3b841391659d55a82dd233871517f4b0d2dd5a) (diffs)
- docs/source/devel/testing/pytest_reference.md (version 7d3b841391659d55a82dd233871517f4b0d2dd5a) (diffs)
- docs/source/qa.md (version 7d3b841391659d55a82dd233871517f4b0d2dd5a) (diffs)
- pipeline/infrastructure/daskhelpers_test.py (version 7d3b841391659d55a82dd233871517f4b0d2dd5a) (diffs)
- scripts/README.md (version 7d3b841391659d55a82dd233871517f4b0d2dd5a) (diffs)
- scripts/install_dependencies.py (version 7d3b841391659d55a82dd233871517f4b0d2dd5a) (diffs)
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Rui Xue c5814b3059e280ff7102a2e49dfea61ca1740b97
PIPE-3211: prune redundant and obsolete development dependencies
- Remove legacy linters and formatters (black, isort, flake8, pylint, pydocstyle, pycodestyle) superseded by ruff.
- Remove deprecated pytest-forked (covered by pytest-xdist) and unused CLI inspector johnnydep from dev dependencies.
- Update developer documentation in `docs/source/dependencies.md`.
- Synchronize and prune `pixi.lock` across all environments. -
Rui Xue c51df6219e629aa1991514534969533117f189b2
PIPE-3211: remove stale test procedures for `hifa_cal_tier0` and `hifa_calimage_tier0`; should use `scripts/procedure_add_parallel.py` instead.
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Rui Xue 05f7e92c5c32b44b1c005b054229de35d298e55b
PIPE-3211: update `astropy` dependency to version 8.0
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Rui Xue 7242f0943dc9ff5d969f976c8c4050cdcf2e8ab3
PIPE-3211: prune obsolete and unused documentation dependencies
- Remove legacy Python 2/3 compatibility shim future and redundant transitive dependency urllib3 from docs optional-dependencies.
- Remove dead PyPI dummy package nodejs (Node.js is provided by Conda).
- Remove unused Sphinx extensions (nbsphinx, sphinx-autoapi), unused theme (sphinx_rtd_theme), and ipympl widget not active in conf.py.
- Update documentation list in `docs/source/dependencies.md`.
- Synchronize and prune `pixi.lock` across docs environments. -
Rui Xue 99c9b87a741c4f3802da8bb954e72287ba074e1a
PIPE-3211: single-source dynamic version from `pipeline._version.py`
- Configure setuptools dynamic version via attr = "pipeline._version.version"
in pyproject.toml instead of file = "version".
- Update `scripts/build_backend.py` to eliminate root version file generation,
leaving `pipeline/_version.py` as the single source of truth for both build
and runtime.
- Remove redundant /version ignore from .gitignore and package-data.
- Add docstrings to `build_backend.py` PEP 517/660 hooks and format with Ruff.- .gitignore (version 99c9b87a741c4f3802da8bb954e72287ba074e1a) (diffs)
- pyproject.toml (version 99c9b87a741c4f3802da8bb954e72287ba074e1a) (diffs)
- scripts/README.md (version 99c9b87a741c4f3802da8bb954e72287ba074e1a) (diffs)
- scripts/build_backend.py (version 99c9b87a741c4f3802da8bb954e72287ba074e1a) (diffs)
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Rui Xue 74823d13b4eddac41d072131f0e80b908a971467
PIPE-3211: update CI/CD workflow trigger path filters
- Replace deleted setup.py and environment*.yml paths with active
project components (scripts/**, pixi.lock, MANIFEST.in).
- Ensure modifications to in-tree build backend, asset bundler,
and dependency installer trigger test and docs workflows.- .github/workflows/build-gh-pages-pixi.yml (version 74823d13b4eddac41d072131f0e80b908a971467) (diffs)
- .github/workflows/build-gh-pages.yml (version 74823d13b4eddac41d072131f0e80b908a971467) (diffs)
- .github/workflows/test-unit-pixi.yml (version 74823d13b4eddac41d072131f0e80b908a971467) (diffs)
- .github/workflows/test-unit.yml (version 74823d13b4eddac41d072131f0e80b908a971467) (diffs)
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Rui Xue 79d49872125a4170b64ea819c286bb465459a632
PIPE-3211: prune redundant six dependency and obsolete egg package data
- Remove redundant top-level six requirement from pixi pypi-dependencies
(not imported by Pipeline; resolved transitively where needed).
- Remove obsolete '*.egg' pattern from setuptools package-data. -
Rui Xue 3e14baf569ff0feea0bb288ba1c74d6dab451268
PIPE-3211: fold requirements into `pyproject.toml` and add CASA dependency installer
- Declare dependencies and optional extras (dev, docs, exp) statically in `pyproject.toml` per PEP 621, removing dynamic dependency file tables.
- Remove `requirements*.txt` and legacy `Dockerfile`.
- Add `scripts/install_dependencies.py` to allow installing dependencies into monolithic CASA environments without installing Pipeline.
- Update `MANIFEST.in` to include `scripts/install_dependencies.py` in sdists.
- Update developer and setup documentation to reflect `pyproject.toml` as SSoT.- Dockerfile (version 3e14baf569ff0feea0bb288ba1c74d6dab451268) (diffs)
- MANIFEST.in (version 3e14baf569ff0feea0bb288ba1c74d6dab451268) (diffs)
- docs/source/dependencies.md (version 3e14baf569ff0feea0bb288ba1c74d6dab451268) (diffs)
- docs/source/devel/setup/conda_setup.rst (version 3e14baf569ff0feea0bb288ba1c74d6dab451268) (diffs)
- docs/source/devel/setup/monolithic_casa.md (version 3e14baf569ff0feea0bb288ba1c74d6dab451268) (diffs)
- docs/source/qa.md (version 3e14baf569ff0feea0bb288ba1c74d6dab451268) (diffs)
- pixi.lock (version 3e14baf569ff0feea0bb288ba1c74d6dab451268) (diffs)
- pyproject.toml (version 3e14baf569ff0feea0bb288ba1c74d6dab451268) (diffs)
- requirements.txt (version 3e14baf569ff0feea0bb288ba1c74d6dab451268) (diffs)
- requirements_dev.txt (version 3e14baf569ff0feea0bb288ba1c74d6dab451268) (diffs)
- requirements_docs.txt (version 3e14baf569ff0feea0bb288ba1c74d6dab451268) (diffs)
- requirements_exp.txt (version 3e14baf569ff0feea0bb288ba1c74d6dab451268) (diffs)
- scripts/README.md (version 3e14baf569ff0feea0bb288ba1c74d6dab451268) (diffs)
- scripts/bundle_assets.py (version 3e14baf569ff0feea0bb288ba1c74d6dab451268) (diffs)
- scripts/install_dependencies.py (version 3e14baf569ff0feea0bb288ba1c74d6dab451268) (diffs)
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Rui Xue 6919fb4f257da7fffc1aaa1ccb8390336b5e583f
PIPE-3211: add documentation for weblog resources and developer scripts
- Add `templates/resources/README.md` documenting vendor assets, bundling, and licenses
- Add `scripts/README.md` documenting maintenance and utility scripts
- Fix minor docstring formatting in `scripts/update_references.py` -
Rui Xue 17c5d5815dfaf728dd7209b4e630cde9ae0a282e
PIPE-3211: migrate dynamic versioning to in-tree build backend and remove `setup.py`
- Add in-tree PEP 517/660 build backend wrapper (`scripts/build_backend.py`)
delegating to `setuptools.build_meta` to generate NRAO Git versioning
on-demand during build and installation.
- Configure `build-backend = "build_backend"` and `version = { file = "version" }`
in `pyproject.toml`.
- Add `MANIFEST.in` to include `scripts/build_backend.py` in source distributions.
- Remove legacy `setup.py` and ignore generated `/version` in `.gitignore`.
- Document `build_backend.py` in `scripts/README.md`.- .gitignore (version 17c5d5815dfaf728dd7209b4e630cde9ae0a282e) (diffs)
- MANIFEST.in (version 17c5d5815dfaf728dd7209b4e630cde9ae0a282e) (diffs)
- pyproject.toml (version 17c5d5815dfaf728dd7209b4e630cde9ae0a282e) (diffs)
- scripts/README.md (version 17c5d5815dfaf728dd7209b4e630cde9ae0a282e) (diffs)
- scripts/build_backend.py (version 17c5d5815dfaf728dd7209b4e630cde9ae0a282e) (diffs)
- setup.py (version 17c5d5815dfaf728dd7209b4e630cde9ae0a282e) (diffs)
-
Rui Xue 9d3fc84477d803a0c67f325e7375d13af31a6caa
PIPE-3211/PIPE-2930: Remove duplicated test tasks from `pyproject.toml` and update Numpy version constraint in `requirements.txt`
-
Rui Xue 9912dcb94977a770df4c6263bc0ff59a38a03ee9
PIPE-3211: decouple weblog asset minification from `setup.py`
- Add `scripts/bundle_assets.py` and track pre-generated minified CSS/JS bundles
- Remove minification commands and jsmin/csscompressor from `setup.py` and build-system requires
- Add bundle-assets pixi task and move minification dependencies to `requirements_dev.txt`- pipeline/infrastructure/renderer/templates/resources/css/all.min.css (version 9912dcb94977a770df4c6263bc0ff59a38a03ee9) (diffs)
- pipeline/infrastructure/renderer/templates/resources/js/pipeline_common.min.js (version 9912dcb94977a770df4c6263bc0ff59a38a03ee9) (diffs)
- pipeline/infrastructure/renderer/templates/resources/js/pipeline_plots.min.js (version 9912dcb94977a770df4c6263bc0ff59a38a03ee9) (diffs)
- pyproject.toml (version 9912dcb94977a770df4c6263bc0ff59a38a03ee9) (diffs)
- requirements_dev.txt (version 9912dcb94977a770df4c6263bc0ff59a38a03ee9) (diffs)
- scripts/bundle_assets.py (version 9912dcb94977a770df4c6263bc0ff59a38a03ee9) (diffs)
- setup.py (version 9912dcb94977a770df4c6263bc0ff59a38a03ee9) (diffs)
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Rui Xue 08dc2a857608a09d87d0209a3a8065e1c22e25a5
PIPE-3211: bump runtime dependencies in `pyproject.toml` and update `pixi.lock`
- Bump bdsf to ~=1.14 and drop macOS platform/version constraint now that native wheels support Python 3.13+ on Apple Silicon.
- Bump low-risk runtime dependencies: intervaltree to ~=3.2, mako to ~=1.4, and pypubsub to ==4.0.7.
- Synchronize pixi.lock across all environments.