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11-Nov-2024 20:24:17 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/fixes/__pycache__/fix_raise.cpython-38.pyc
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11-Nov-2024 20:24:17 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/fixes/__pycache__/fix_zip.cpython-38.opt-2.pyc
11-Nov-2024 20:24:17 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/fixes/__pycache__/fix_standarderror.cpython-38.opt-1.pyc
11-Nov-2024 20:24:17 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/fixes/__pycache__/fix_types.cpython-38.opt-2.pyc
11-Nov-2024 20:24:17 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/fixes/__pycache__/fix_imports.cpython-38.opt-2.pyc
11-Nov-2024 20:24:17 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/fixes/__pycache__/fix_nonzero.cpython-38.pyc
11-Nov-2024 20:24:17 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/fixes/__pycache__/fix_reload.cpython-38.pyc
11-Nov-2024 20:24:17 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/fixes/__pycache__/fix_ne.cpython-38.opt-2.pyc
11-Nov-2024 20:24:17 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/fixes/fix_execfile.py
11-Nov-2024 20:24:17 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/fixes/fix_filter.py
11-Nov-2024 20:24:17 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/fixes/fix_idioms.py
11-Nov-2024 20:24:17 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/fixes/fix_dict.py
11-Nov-2024 20:24:17 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/fixes/fix_apply.py
11-Nov-2024 20:24:17 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/fixes/fix_funcattrs.py
11-Nov-2024 20:24:17 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/fixes/fix_imports2.py
11-Nov-2024 20:24:17 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/fixes/fix_zip.py
11-Nov-2024 20:24:17 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/fixer_util.py
11-Nov-2024 20:24:17 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/fixer_base.py
11-Nov-2024 20:24:17 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/__pycache__/
11-Nov-2024 20:24:17 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/__pycache__/fixer_base.cpython-38.opt-1.pyc
11-Nov-2024 20:24:17 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/__pycache__/__main__.cpython-38.opt-1.pyc
11-Nov-2024 20:24:17 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/__pycache__/btm_utils.cpython-38.opt-2.pyc
11-Nov-2024 20:24:17 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/__pycache__/__main__.cpython-38.pyc
11-Nov-2024 20:24:17 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/__pycache__/fixer_base.cpython-38.opt-2.pyc
11-Nov-2024 20:24:17 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/__pycache__/pytree.cpython-38.opt-1.pyc
11-Nov-2024 20:24:17 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/__pycache__/__init__.cpython-38.opt-2.pyc
11-Nov-2024 20:24:17 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/__pycache__/refactor.cpython-38.opt-2.pyc
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/__pycache__/__main__.cpython-38.opt-2.pyc
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/__pycache__/btm_utils.cpython-38.pyc
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/__pycache__/pytree.cpython-38.opt-2.pyc
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/__pycache__/pytree.cpython-38.pyc
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/__pycache__/main.cpython-38.pyc
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/__pycache__/__init__.cpython-38.opt-1.pyc
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/__pycache__/refactor.cpython-38.pyc
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/__pycache__/fixer_util.cpython-38.opt-1.pyc
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/__pycache__/fixer_util.cpython-38.pyc
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/__pycache__/refactor.cpython-38.opt-1.pyc
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/__pycache__/btm_utils.cpython-38.opt-1.pyc
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/__pycache__/btm_matcher.cpython-38.opt-2.pyc
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/__pycache__/patcomp.cpython-38.pyc
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/__pycache__/main.cpython-38.opt-1.pyc
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/__pycache__/btm_matcher.cpython-38.opt-1.pyc
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/__pycache__/pygram.cpython-38.opt-2.pyc
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/__pycache__/pygram.cpython-38.opt-1.pyc
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/__pycache__/main.cpython-38.opt-2.pyc
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/__pycache__/btm_matcher.cpython-38.pyc
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/__pycache__/fixer_util.cpython-38.opt-2.pyc
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/__pycache__/fixer_base.cpython-38.pyc
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/__pycache__/patcomp.cpython-38.opt-2.pyc
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/__pycache__/patcomp.cpython-38.opt-1.pyc
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/__pycache__/pygram.cpython-38.pyc
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/__pycache__/__init__.cpython-38.pyc
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/btm_matcher.py
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/Grammar.txt
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/pytree.py
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/lib2to3/PatternGrammar3.8.10.final.0.pickle
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/fnmatch.py
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/LICENSE.txt
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/socket.py
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/lib/libpython3.8.a
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/bin/
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/bin/pytest
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/bin/py.test
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/bin/ipython3
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/bin/iptest3
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/bin/python3
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/bin/pip3
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/bin/2to3-3.8
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/bin/f2py
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/bin/pip
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/bin/f2py3.8
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/bin/idle3.8
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/bin/fonttools
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/bin/python3.8
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/bin/python3-config
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/bin/pyftmerge
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/bin/iptest
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/bin/python3.8-config
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/bin/pydoc3.8
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/bin/pydoc3
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/bin/pyftsubset
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/bin/pygmentize
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/bin/f2py3
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/bin/pip3.8
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/bin/2to3
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/bin/ipython
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/bin/ttx
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/bin/idle3
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/bin/pip3.10
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/py/bin/py-root-dir
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/libevent-2.1.so.6
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/casa/
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/casa/bin/
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/casa/bin/update-data
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/casa/bin/legacyapp
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/libevent_core-2.1.so.6
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/lib/libtk8.5.so
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/bin/
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/bin/mpicasa
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/bin/python3
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/bin/pip3
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/bin/casaviewer
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/bin/casa
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/bin/2to3
11-Nov-2024 20:25:31 casa-6.6.1-17-py3.8.el8/bin/buildmytasks
11-Nov-2024 20:25:31 0
11-Nov-2024 20:25:31 Executing: ['git', 'clone', 'https://open-bitbucket.nrao.edu/scm/pipe/pipeline.git']
11-Nov-2024 20:25:31 stderr: Cloning into 'pipeline'...
11-Nov-2024 20:25:31 0
11-Nov-2024 20:25:31 Executing: ['git', 'config', '--global', 'user.name', '"bamboo"']
11-Nov-2024 20:25:31 0
11-Nov-2024 20:25:31 Executing: ['git', 'config', '--global', 'user.email', '"bamboo_merge@.nrao.edu"']
11-Nov-2024 20:25:31 0
11-Nov-2024 20:25:31 Executing: ['git', 'checkout', 'main']
11-Nov-2024 20:25:31 stderr: Already on 'main'
11-Nov-2024 20:25:31 Your branch is up to date with 'origin/main'.
11-Nov-2024 20:25:31 0
11-Nov-2024 20:25:31 Executing: ['git', 'merge', 'origin/PIPE-2385-inheritance-of-docstrings-and-type-hints-cli-tasks-and-constructor-of-inputs-class']
11-Nov-2024 20:25:31 Updating aa8b58737..81715d68c
11-Nov-2024 20:25:31 Fast-forward
11-Nov-2024 20:25:31 pipeline/__init__.py                | 34 +++++++++++++-
11-Nov-2024 20:25:31 pipeline/infrastructure/basetask.py |  6 ++-
11-Nov-2024 20:25:31 pipeline/infrastructure/doctools.py | 89 +++++++++++++++++++++++++++++++++++++
11-Nov-2024 20:25:31 requirements.txt                    |  1 +
11-Nov-2024 20:25:31 4 files changed, 128 insertions(+), 2 deletions(-)
11-Nov-2024 20:25:31 create mode 100644 pipeline/infrastructure/doctools.py
11-Nov-2024 20:25:31 0
11-Nov-2024 20:25:31 casadir: casa-6.6.1-17-py3.8.el8
11-Nov-2024 20:25:31 fullpath: /home/casatest/casa-build-utils/pipeline/workdir/casa-6.6.1-17-py3.8.el8
11-Nov-2024 20:25:31 {'HOSTNAME': '4786ecc46c4f', 'PWD': '/home/casatest/casa-build-utils/pipeline', 'HOME': '/home/casatest', 'SHLVL': '1', 'PATH': '/home/casatest/casa-build-utils/pipeline/workdir/casa-6.6.1-17-py3.8.el8:/home/casatest/casa-build-utils/pipeline/workdir/casa-6.6.1-17-py3.8.el8/bin:/home/casatest/casa-build-utils/pipeline/workdir/pipeline:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin', 'OLDPWD': '/home/casatest', '_': '/usr/local/bin/python3.8', 'LC_CTYPE': 'C.UTF-8'}
11-Nov-2024 20:25:31 Executing: ['/home/casatest/casa-build-utils/pipeline/workdir/casa-6.6.1-17-py3.8.el8/bin/pip3', 'install', '--extra-index-url=https://pypi.org/simple', '--disable-pip-version-check', '--use-pep517', '--upgrade-strategy=only-if-needed', 'numpy==1.23.5', '-r', '/home/casatest/casa-build-utils/pipeline/workdir/pipeline/requirements.txt']
11-Nov-2024 20:25:31 Looking in indexes: https://pypi.org/simple, https://pypi.org/simple
11-Nov-2024 20:25:31 Ignoring astropy: markers 'python_version >= "3.10"' don't match your environment
11-Nov-2024 20:25:31 Collecting numpy==1.23.5
11-Nov-2024 20:25:31   Downloading numpy-1.23.5-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (17.1 MB)
11-Nov-2024 20:25:31      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 17.1/17.1 MB 386.8 kB/s eta 0:00:00
11-Nov-2024 20:25:31 Collecting csscompressor==0.9.5
11-Nov-2024 20:25:31   Downloading csscompressor-0.9.5.tar.gz (237 kB)
11-Nov-2024 20:25:31      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 237.8/237.8 kB 5.7 MB/s eta 0:00:00
11-Nov-2024 20:25:31   Installing build dependencies: started
11-Nov-2024 20:25:31   Installing build dependencies: finished with status 'done'
11-Nov-2024 20:25:31   Getting requirements to build wheel: started
11-Nov-2024 20:25:31   Getting requirements to build wheel: finished with status 'done'
11-Nov-2024 20:25:31   Preparing metadata (pyproject.toml): started
11-Nov-2024 20:25:31   Preparing metadata (pyproject.toml): finished with status 'done'
11-Nov-2024 20:25:31 Collecting cachetools==5.3.1
11-Nov-2024 20:25:31   Downloading cachetools-5.3.1-py3-none-any.whl (9.3 kB)
11-Nov-2024 20:25:31 Collecting mako==1.2.4
11-Nov-2024 20:25:31   Downloading Mako-1.2.4-py3-none-any.whl (78 kB)
11-Nov-2024 20:25:31      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 78.7/78.7 kB 5.1 MB/s eta 0:00:00
11-Nov-2024 20:25:31 Collecting pypubsub==4.0.3
11-Nov-2024 20:25:31   Downloading Pypubsub-4.0.3-py3-none-any.whl (61 kB)
11-Nov-2024 20:25:31      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 61.4/61.4 kB 3.2 MB/s eta 0:00:00
11-Nov-2024 20:25:31 Collecting intervaltree==3.1.0
11-Nov-2024 20:25:31   Downloading intervaltree-3.1.0.tar.gz (32 kB)
11-Nov-2024 20:25:31   Installing build dependencies: started
11-Nov-2024 20:25:31   Installing build dependencies: finished with status 'done'
11-Nov-2024 20:35:29   Getting requirements to build wheel: started
11-Nov-2024 20:35:29   Getting requirements to build wheel: finished with status 'done'
11-Nov-2024 20:35:29   Preparing metadata (pyproject.toml): started
11-Nov-2024 20:35:29   Preparing metadata (pyproject.toml): finished with status 'done'
11-Nov-2024 20:35:29 Collecting logutils==0.3.5
11-Nov-2024 20:35:29   Downloading logutils-0.3.5.tar.gz (27 kB)
11-Nov-2024 20:35:29   Installing build dependencies: started
11-Nov-2024 20:35:29   Installing build dependencies: finished with status 'done'
11-Nov-2024 20:35:29   Getting requirements to build wheel: started
11-Nov-2024 20:35:29   Getting requirements to build wheel: finished with status 'done'
11-Nov-2024 20:35:29   Preparing metadata (pyproject.toml): started
11-Nov-2024 20:35:29   Preparing metadata (pyproject.toml): finished with status 'done'
11-Nov-2024 20:35:29 Collecting ps_mem==3.14
11-Nov-2024 20:35:29   Downloading ps_mem-3.14-py2.py3-none-any.whl (19 kB)
11-Nov-2024 20:35:29 Collecting astropy==5.2.2
11-Nov-2024 20:35:29   Downloading astropy-5.2.2-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (11.4 MB)
11-Nov-2024 20:35:29      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 11.4/11.4 MB 21.8 MB/s eta 0:00:00
11-Nov-2024 20:35:29 Collecting bdsf==1.10.3
11-Nov-2024 20:35:29   Downloading bdsf-1.10.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.6 MB)
11-Nov-2024 20:35:29      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.6/2.6 MB 14.7 MB/s eta 0:00:00
11-Nov-2024 20:35:29 Collecting docstring-inheritance
11-Nov-2024 20:35:29   Downloading docstring_inheritance-2.2.1-py3-none-any.whl (24 kB)
11-Nov-2024 20:35:29 Collecting MarkupSafe>=0.9.2
11-Nov-2024 20:35:29   Downloading MarkupSafe-2.1.5-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (26 kB)
11-Nov-2024 20:35:29 Collecting sortedcontainers<3.0,>=2.0
11-Nov-2024 20:35:29   Downloading sortedcontainers-2.4.0-py2.py3-none-any.whl (29 kB)
11-Nov-2024 20:35:29 Collecting pyerfa>=2.0
11-Nov-2024 20:35:29   Downloading pyerfa-2.0.0.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (749 kB)
11-Nov-2024 20:35:29      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 749.7/749.7 kB 22.6 MB/s eta 0:00:00
11-Nov-2024 20:35:29 Requirement already satisfied: packaging>=19.0 in /home/casatest/casa-build-utils/pipeline/workdir/casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/site-packages (from astropy==5.2.2->-r /home/casatest/casa-build-utils/pipeline/workdir/pipeline/requirements.txt (line 30)) (23.1)
11-Nov-2024 20:35:29 Collecting PyYAML>=3.13
11-Nov-2024 20:35:29   Downloading PyYAML-6.0.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (746 kB)
11-Nov-2024 20:35:29      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 746.5/746.5 kB 12.9 MB/s eta 0:00:00
11-Nov-2024 20:35:29 Collecting backports.shutil-get-terminal-size
11-Nov-2024 20:35:29   Downloading backports.shutil_get_terminal_size-1.0.0-py2.py3-none-any.whl (6.5 kB)
11-Nov-2024 20:35:29 Requirement already satisfied: scipy in /home/casatest/casa-build-utils/pipeline/workdir/casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/site-packages (from bdsf==1.10.3->-r /home/casatest/casa-build-utils/pipeline/workdir/pipeline/requirements.txt (line 33)) (1.10.1)
11-Nov-2024 20:35:29 Building wheels for collected packages: csscompressor, intervaltree, logutils
11-Nov-2024 20:35:29   Building wheel for csscompressor (pyproject.toml): started
11-Nov-2024 20:35:29   Building wheel for csscompressor (pyproject.toml): finished with status 'done'
11-Nov-2024 20:35:29   Created wheel for csscompressor: filename=csscompressor-0.9.5-py3-none-any.whl size=240334 sha256=baa705fc8135387967fa4747f396625e707d4eb538b61fca18ec1a35e0889102
11-Nov-2024 20:35:29   Stored in directory: /home/casatest/.cache/pip/wheels/42/70/b2/cde687825f108be6a90249a0f10193e7660da0ce5de9f50e77
11-Nov-2024 20:35:29   Building wheel for intervaltree (pyproject.toml): started
11-Nov-2024 20:35:29   Building wheel for intervaltree (pyproject.toml): finished with status 'done'
11-Nov-2024 20:35:29   Created wheel for intervaltree: filename=intervaltree-3.1.0-py2.py3-none-any.whl size=26097 sha256=6033a9bcdede996a939fff569a45e6b9d4dca809bbe32975fb18eb37f1531cd1
11-Nov-2024 20:35:29   Stored in directory: /home/casatest/.cache/pip/wheels/84/83/6a/98a64d52a91da0bf81a9b7830f2f0d2ec749d4eac4742087c1
11-Nov-2024 20:35:29   Building wheel for logutils (pyproject.toml): started
11-Nov-2024 20:35:29   Building wheel for logutils (pyproject.toml): finished with status 'done'
11-Nov-2024 20:35:29   Created wheel for logutils: filename=logutils-0.3.5-py3-none-any.whl size=19928 sha256=3371abcafaa90dcfe010c67f67d0391be58a48454d41063b9ea6fa9bf002c441
11-Nov-2024 20:35:29   Stored in directory: /home/casatest/.cache/pip/wheels/30/3a/fc/8b94bab3bdebb027689bd6e7a9590852dc6afefea49552f02c
11-Nov-2024 20:35:29 Successfully built csscompressor intervaltree logutils
11-Nov-2024 20:35:29 Installing collected packages: sortedcontainers, ps_mem, logutils, csscompressor, backports.shutil-get-terminal-size, PyYAML, pypubsub, numpy, MarkupSafe, intervaltree, docstring-inheritance, cachetools, pyerfa, mako, astropy, bdsf
11-Nov-2024 20:35:29   Attempting uninstall: numpy
11-Nov-2024 20:35:29     Found existing installation: numpy 1.24.4
11-Nov-2024 20:35:29     Uninstalling numpy-1.24.4:
11-Nov-2024 20:35:29       Successfully uninstalled numpy-1.24.4
11-Nov-2024 20:35:29 Successfully installed MarkupSafe-2.1.5 PyYAML-6.0.2 astropy-5.2.2 backports.shutil-get-terminal-size-1.0.0 bdsf-1.10.3 cachetools-5.3.1 csscompressor-0.9.5 docstring-inheritance-2.2.1 intervaltree-3.1.0 logutils-0.3.5 mako-1.2.4 numpy-1.23.5 ps_mem-3.14 pyerfa-2.0.0.3 pypubsub-4.0.3 sortedcontainers-2.4.0
11-Nov-2024 20:35:29 0
11-Nov-2024 20:35:29 Executing: ['/home/casatest/casa-build-utils/pipeline/workdir/casa-6.6.1-17-py3.8.el8/bin/pip3', 'install', '.']
11-Nov-2024 20:35:29 Processing /home/casatest/casa-build-utils/pipeline/workdir/pipeline
11-Nov-2024 20:35:29   Preparing metadata (setup.py): started
11-Nov-2024 20:35:29   Preparing metadata (setup.py): finished with status 'done'
11-Nov-2024 20:35:29 Installing collected packages: Pipeline
11-Nov-2024 20:35:29 stderr:   DEPRECATION: Pipeline is being installed using the legacy 'setup.py install' method, because it does not have a 'pyproject.toml' and the 'wheel' package is not installed. pip 23.1 will enforce this behaviour change. A possible replacement is to enable the '--use-pep517' option. Discussion can be found at https://github.com/pypa/pip/issues/8559
11-Nov-2024 20:35:29   Running setup.py install for Pipeline: started
11-Nov-2024 20:35:29   Running setup.py install for Pipeline: finished with status 'done'
11-Nov-2024 20:35:29 Successfully installed Pipeline-2024.2.0.2+dirty
11-Nov-2024 20:35:29 stderr:
11-Nov-2024 20:35:29 stderr: [notice] A new release of pip available: 22.3.1 -> 24.3.1
11-Nov-2024 20:35:29 stderr: [notice] To update, run: pip install --upgrade pip
11-Nov-2024 20:35:29 0
11-Nov-2024 20:35:29 Executing: ['/home/casatest/casa-build-utils/pipeline/workdir/casa-6.6.1-17-py3.8.el8/bin/python3', '-m', 'pytest', '/home/casatest/casa-build-utils/pipeline/workdir/pipeline', '--junitxml=/home/casatest/casa-build-utils/pipeline/workdir/pipeline_test_result.xml']
11-Nov-2024 20:35:29 ============================= test session starts ==============================
11-Nov-2024 20:35:29 platform linux -- Python 3.8.10, pytest-7.4.2, pluggy-1.3.0
11-Nov-2024 20:35:29 rootdir: /home/casatest/casa-build-utils/pipeline/workdir/pipeline
11-Nov-2024 20:35:29 configfile: pytest.ini
11-Nov-2024 20:35:29 collected 638 items
11-Nov-2024 20:35:29
11-Nov-2024 20:35:29 pipeline/h/heuristics/linefinder_test.py ..........                      [  1%]
11-Nov-2024 20:35:29 pipeline/h/tasks/common/atmutil_test.py ................................ [  6%]
11-Nov-2024 20:35:29 ............sssssss                                                      [  9%]
11-Nov-2024 20:35:29 pipeline/hifa/tasks/applycal/ampphase_vs_freq_qa_test.py .               [  9%]
11-Nov-2024 20:35:29 pipeline/hifa/tasks/applycal/mswrapper_test.py ....                      [ 10%]
11-Nov-2024 20:35:29 pipeline/hifa/tasks/flagging/flagdeteralma_test.py .............         [ 12%]
11-Nov-2024 20:35:29 pipeline/hifv/heuristics/standard_test.py .....................          [ 15%]
11-Nov-2024 20:35:29 pipeline/hifv/heuristics/uvrange_test.py ...                             [ 16%]
11-Nov-2024 20:35:29 pipeline/hsd/heuristics/grouping2_test.py .......................        [ 19%]
11-Nov-2024 20:35:29 pipeline/hsd/heuristics/rasterscan_test.py ............................. [ 24%]
11-Nov-2024 20:35:29 .........................................................                [ 33%]
11-Nov-2024 20:35:29 pipeline/hsd/tasks/atmcor/atmcor_test.py ........                        [ 34%]
11-Nov-2024 20:35:29 pipeline/hsd/tasks/baseline/detection_test.py ............               [ 36%]
11-Nov-2024 20:35:29 pipeline/hsd/tasks/common/direction_utils_test.py ...............        [ 38%]
11-Nov-2024 20:35:29 pipeline/hsd/tasks/common/display_test.py .....                          [ 39%]
11-Nov-2024 20:35:29 pipeline/hsd/tasks/common/observatory_policy_test.py ...                 [ 39%]
11-Nov-2024 20:35:29 pipeline/hsd/tasks/common/utils_test.py ..........                       [ 41%]
11-Nov-2024 20:35:29 pipeline/hsd/tasks/importdata/reader_test.py .....                       [ 42%]
11-Nov-2024 20:35:29 pipeline/infrastructure/contfilehandler_test.py ..                       [ 42%]
11-Nov-2024 20:35:29 pipeline/infrastructure/executeppr_test.py ................              [ 45%]
11-Nov-2024 20:35:29 pipeline/infrastructure/utils_test.py ...........                        [ 46%]
11-Nov-2024 20:35:29 pipeline/infrastructure/utils/casa_data_test.py .....................    [ 50%]
11-Nov-2024 20:35:29 pipeline/infrastructure/utils/compatibility_test.py .                    [ 50%]
11-Nov-2024 20:35:37 pipeline/infrastructure/utils/conversion_test.py ....................... [ 53%]
11-Nov-2024 20:35:37 .............................................................            [ 63%]
11-Nov-2024 20:35:37 pipeline/infrastructure/utils/imaging_test.py .......................... [ 67%]
11-Nov-2024 20:35:37 .......                                                                  [ 68%]
11-Nov-2024 20:35:37 pipeline/infrastructure/utils/math_test.py ...............               [ 71%]
11-Nov-2024 20:35:37 pipeline/infrastructure/utils/positioncorrection_test.py ....            [ 71%]
11-Nov-2024 20:35:37 pipeline/infrastructure/utils/sorting_test.py ..................         [ 74%]
11-Nov-2024 20:35:37 pipeline/infrastructure/utils/utils_test.py ............................ [ 78%]
11-Nov-2024 20:35:37 ..........................s                                              [ 83%]
11-Nov-2024 20:35:37 pipeline/infrastructure/utils/weblog_test.py ..............              [ 85%]
11-Nov-2024 20:35:37 pipeline/qa/scorecalculator_test.py .................................... [ 90%]
11-Nov-2024 20:35:37 .....                                                                    [ 91%]
11-Nov-2024 20:35:37 pipeline/recipes/recipe_converter_test.py ssssssssssssssssssssssssssssss [ 96%]
11-Nov-2024 20:35:37 sssssssssssssssssssssss                                                  [100%]
11-Nov-2024 20:35:37
11-Nov-2024 20:35:37 =============================== warnings summary ===============================
11-Nov-2024 20:35:37 pipeline/__init__.py:8
11-Nov-2024 20:35:37   /home/casatest/casa-build-utils/pipeline/workdir/pipeline/pipeline/__init__.py:8: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
11-Nov-2024 20:35:37     import pkg_resources
11-Nov-2024 20:35:37
11-Nov-2024 20:35:37 ../casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/site-packages/pkg_resources/__init__.py:3117
11-Nov-2024 20:35:37   /home/casatest/casa-build-utils/pipeline/workdir/casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/site-packages/pkg_resources/__init__.py:3117: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('mpl_toolkits')`.
11-Nov-2024 20:35:37   Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
11-Nov-2024 20:35:37     declare_namespace(pkg)
11-Nov-2024 20:35:37
11-Nov-2024 20:35:37 ../casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/site-packages/pkg_resources/__init__.py:3117
11-Nov-2024 20:35:37   /home/casatest/casa-build-utils/pipeline/workdir/casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/site-packages/pkg_resources/__init__.py:3117: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('google')`.
11-Nov-2024 20:35:37   Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
11-Nov-2024 20:35:37     declare_namespace(pkg)
11-Nov-2024 20:35:37
11-Nov-2024 20:35:37 ../casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/site-packages/pkg_resources/__init__.py:3117
11-Nov-2024 20:35:37   /home/casatest/casa-build-utils/pipeline/workdir/casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/site-packages/pkg_resources/__init__.py:3117: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('stsci')`.
11-Nov-2024 20:35:37   Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
11-Nov-2024 20:35:37     declare_namespace(pkg)
11-Nov-2024 20:35:37
11-Nov-2024 20:35:37 <frozen importlib._bootstrap>:219
11-Nov-2024 20:35:37   <frozen importlib._bootstrap>:219: RuntimeWarning: numpy.ndarray size changed, may indicate binary incompatibility. Expected 80 from C header, got 96 from PyObject
11-Nov-2024 20:35:37
11-Nov-2024 20:35:37 pipeline/hif/tasks/tclean/plot_beams_vlasscube.py:72
11-Nov-2024 20:35:37 pipeline/hif/tasks/tclean/plot_beams_vlasscube.py:72
11-Nov-2024 20:35:37   /home/casatest/casa-build-utils/pipeline/workdir/pipeline/pipeline/hif/tasks/tclean/plot_beams_vlasscube.py:72: DeprecationWarning: invalid escape sequence \m
11-Nov-2024 20:35:37     f'Spw Selection\n BeamDev$_\mathdefault{{th}}$={beam_dev}, flagpct$_\mathdefault{{th}}$={flagpct_threshold*100}%')
11-Nov-2024 20:35:37
11-Nov-2024 20:35:37 pipeline/hif/tasks/editimlist/display.py:77
11-Nov-2024 20:35:37 pipeline/hif/tasks/editimlist/display.py:77
11-Nov-2024 20:35:37 pipeline/hif/tasks/editimlist/display.py:77
11-Nov-2024 20:35:37 pipeline/hif/tasks/editimlist/display.py:77
11-Nov-2024 20:35:37   /home/casatest/casa-build-utils/pipeline/workdir/pipeline/pipeline/hif/tasks/editimlist/display.py:77: DeprecationWarning: invalid escape sequence \m
11-Nov-2024 20:35:37     f'Spw Selection\n n$_\mathdefault{{field}}$ (flagpct>flagpct$_\mathdefault{{th}}$): n$_\mathdefault{{th}}$={nfield_thresh}, flagpct$_\mathdefault{{th}}$={flagpct_thresh*100}%')
11-Nov-2024 20:35:37
11-Nov-2024 20:35:37 pipeline/h/tasks/common/atmutil_test.py::test
11-Nov-2024 20:35:37   /home/casatest/casa-build-utils/pipeline/workdir/casa-6.6.1-17-py3.8.el8/lib/py/lib/python3.8/site-packages/_pytest/python.py:198: PytestReturnNotNoneWarning: Expected None, but pipeline/h/tasks/common/atmutil_test.py::test returned array([0.97613415, 0.97613389, 0.97613364, ..., 0.97125513, 0.97126336,
11-Nov-2024 20:35:37          0.97127152]), which will be an error in a future version of pytest.  Did you mean to use `assert` instead of `return`?
11-Nov-2024 20:35:37     warnings.warn(
11-Nov-2024 20:35:37
11-Nov-2024 20:35:37 -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
11-Nov-2024 20:35:37 - generated xml file: /home/casatest/casa-build-utils/pipeline/workdir/pipeline_test_result.xml -
11-Nov-2024 20:35:37 =========== 577 passed, 61 skipped, 12 warnings in 561.63s (0:09:21) ===========
11-Nov-2024 20:35:37 0
11-Nov-2024 20:35:38 mkdir: cannot create directory 'workdir': File exists
11-Nov-2024 20:35:39 Finished task 'Test' with result: Success
11-Nov-2024 20:35:39 All conditions for task 'JUnit Parser' were met. Conditions: Variable bamboo.repository.pr.targetBranch matches pattern main
11-Nov-2024 20:35:39 Starting task 'JUnit Parser' of type 'com.atlassian.bamboo.plugins.testresultparser:task.testresultparser.junit'
11-Nov-2024 20:35:39 Parsing test results under /export/home/cbt-pipeline-test/ci-workspace/bamboohome/xml-data/build-dir/PIPE-PPRT937-PPT661...
11-Nov-2024 20:35:39 Finished task 'JUnit Parser' with result: Success
11-Nov-2024 20:35:39 Starting task 'Cleanup' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script'
11-Nov-2024 20:35:39
Beginning to execute external process for build 'Pipeline - Pipeline Pull Request Test - PIPE-2385-inheritance-of-docstrings-and-type-hints-cli-tasks-and-constructor-of-inputs-class - Pipeline PR Test 6.6.1 #1 (PIPE-PPRT937-PPT661-1)'
... running command line:
/export/home/cbt-pipeline-test/ci-workspace/bamboohome/temp/PIPE-PPRT937-PPT661-1-ScriptBuildTask-2757019877421886274.sh
... in: /export/home/cbt-pipeline-test/ci-workspace/bamboohome/xml-data/build-dir/PIPE-PPRT937-PPT661
11-Nov-2024 20:35:39 Starting cleanup
11-Nov-2024 20:35:39 Error response from daemon: No such container: pipeline-test
11-Nov-2024 20:35:39 Error response from daemon: No such container: pipeline-test
11-Nov-2024 20:35:39 Cleanup complete
11-Nov-2024 20:35:39 Finished task 'Cleanup' with result: Success
11-Nov-2024 20:35:39 Running post build plugin 'Docker Container Cleanup'
11-Nov-2024 20:35:39
Beginning to execute external process for build 'Pipeline - Pipeline Pull Request Test - PIPE-2385-inheritance-of-docstrings-and-type-hints-cli-tasks-and-constructor-of-inputs-class - Pipeline PR Test 6.6.1 #1 (PIPE-PPRT937-PPT661-1)'
... running command line:
/usr/bin/docker rm -f pipelinetest
... in: /export/home/cbt-pipeline-test/ci-workspace/bamboohome/xml-data/build-dir/PIPE-PPRT937-PPT661
11-Nov-2024 20:35:43 pipelinetest
11-Nov-2024 20:35:43 Running post build plugin 'NCover Results Collector'
11-Nov-2024 20:35:43 Running post build plugin 'Build Results Label Collector'
11-Nov-2024 20:35:43 Running post build plugin 'Clover Results Collector'
11-Nov-2024 20:35:43 Running post build plugin 'npm Cache Cleanup'
11-Nov-2024 20:35:43 Running post build plugin 'Artifact Copier'
11-Nov-2024 20:35:43 Publishing an artifact: Result xml
11-Nov-2024 20:35:43 Finished publishing of artifact Required job artifact Http Compression On : [Result xml], patterns: [pipeline_test_result.xml] anchored at: [pkgout] in 155.0 ms
11-Nov-2024 20:35:43 Finalising the build...
11-Nov-2024 20:35:43 Stopping timer.
11-Nov-2024 20:35:43 Build PIPE-PPRT937-PPT661-1 completed.
11-Nov-2024 20:35:43 Running on server: post build plugin 'Build Hanging Detection Configuration'
11-Nov-2024 20:35:43 Running on server: post build plugin 'NCover Results Collector'
11-Nov-2024 20:35:43 Running on server: post build plugin 'Build Labeller'
11-Nov-2024 20:35:43 Running on server: post build plugin 'Clover Delta Calculator'
11-Nov-2024 20:35:43 Running on server: post build plugin 'Maven Dependencies Postprocessor'
11-Nov-2024 20:35:43 All post build plugins have finished
11-Nov-2024 20:35:43 Generating build results summary...
11-Nov-2024 20:35:43 Saving build results to disk...
11-Nov-2024 20:35:43 Store variable context...
11-Nov-2024 20:35:43 Finished building PIPE-PPRT937-PPT661-1.