Build: #59 failed

Job: Pipeline PR Test 6.6.6 failed

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  1. Default Stage

Build log

The build generated 27,337 lines of output.The output is too long and has been truncated to the last 1,000 lines. Download or view full build log.

14-Dec-2024 00:19:45 casa-6.6.6-7-py3.10.el8/lib/mpi/man/man3/HWLOC_OBJ_BRIDGE_HOST.3
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14-Dec-2024 00:19:45 casa-6.6.6-7-py3.10.el8/lib/mpi/man/man3/hwloc_bitmap_singlify.3
14-Dec-2024 00:19:45 casa-6.6.6-7-py3.10.el8/lib/mpi/man/man3/MPI_Raccumulate.3
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14-Dec-2024 00:19:45 casa-6.6.6-7-py3.10.el8/lib/mpi/man/man3/hwlocality_gl.3
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14-Dec-2024 00:19:45 casa-6.6.6-7-py3.10.el8/lib/mpi/man/man3/MPI_Comm_group.3
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14-Dec-2024 00:19:45 casa-6.6.6-7-py3.10.el8/lib/mpi/man/man3/MPI_File_read_ordered.3
14-Dec-2024 00:19:45 casa-6.6.6-7-py3.10.el8/lib/mpi/man/man3/hwloc_topology_set_flags.3
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14-Dec-2024 00:19:45 casa-6.6.6-7-py3.10.el8/lib/mpi/man/man3/MPI_Alltoallv.3
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14-Dec-2024 00:19:45 casa-6.6.6-7-py3.10.el8/lib/mpi/man/man3/hwloc_bitmap_set_ith_ulong.3
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14-Dec-2024 00:19:45 casa-6.6.6-7-py3.10.el8/lib/mpi/man/man3/MPI_Ineighbor_alltoall.3
14-Dec-2024 00:19:45 casa-6.6.6-7-py3.10.el8/lib/mpi/man/man3/MPI_Testsome.3
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14-Dec-2024 00:19:45 casa-6.6.6-7-py3.10.el8/lib/mpi/man/man3/MPI_Neighbor_alltoall.3
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14-Dec-2024 00:19:45 casa-6.6.6-7-py3.10.el8/share/tk8.6/demos/aniwave.tcl
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14-Dec-2024 00:19:45 casa-6.6.6-7-py3.10.el8/share/tk8.6/tk.tcl
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14-Dec-2024 00:19:45 casa-6.6.6-7-py3.10.el8/share/tk8.6/ttk/button.tcl
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14-Dec-2024 00:19:45 casa-6.6.6-7-py3.10.el8/share/tk8.6/ttk/utils.tcl
14-Dec-2024 00:19:45 casa-6.6.6-7-py3.10.el8/share/tk8.6/ttk/combobox.tcl
14-Dec-2024 00:19:45 casa-6.6.6-7-py3.10.el8/share/tk8.6/ttk/xpTheme.tcl
14-Dec-2024 00:19:45 casa-6.6.6-7-py3.10.el8/share/tk8.6/ttk/scale.tcl
14-Dec-2024 00:19:45 casa-6.6.6-7-py3.10.el8/share/tk8.6/ttk/cursors.tcl
14-Dec-2024 00:19:45 casa-6.6.6-7-py3.10.el8/share/tk8.6/ttk/treeview.tcl
14-Dec-2024 00:19:45 casa-6.6.6-7-py3.10.el8/share/tk8.6/ttk/altTheme.tcl
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14-Dec-2024 00:19:45 casa-6.6.6-7-py3.10.el8/share/tk8.6/ttk/notebook.tcl
14-Dec-2024 00:19:45 casa-6.6.6-7-py3.10.el8/share/tk8.6/ttk/menubutton.tcl
14-Dec-2024 00:19:45 casa-6.6.6-7-py3.10.el8/share/tk8.6/ttk/ttk.tcl
14-Dec-2024 00:19:45 casa-6.6.6-7-py3.10.el8/share/tk8.6/ttk/spinbox.tcl
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14-Dec-2024 00:19:45 casa-6.6.6-7-py3.10.el8/share/tk8.6/ttk/progress.tcl
14-Dec-2024 00:19:45 casa-6.6.6-7-py3.10.el8/share/tk8.6/ttk/clamTheme.tcl
14-Dec-2024 00:19:45 casa-6.6.6-7-py3.10.el8/share/tk8.6/ttk/scrollbar.tcl
14-Dec-2024 00:19:45 casa-6.6.6-7-py3.10.el8/share/tk8.6/text.tcl
14-Dec-2024 00:19:45 casa-6.6.6-7-py3.10.el8/share/tk8.6/bgerror.tcl
14-Dec-2024 00:19:45 casa-6.6.6-7-py3.10.el8/share/tk8.6/menu.tcl
14-Dec-2024 00:19:45 casa-6.6.6-7-py3.10.el8/share/tk8.6/spinbox.tcl
14-Dec-2024 00:19:45 casa-6.6.6-7-py3.10.el8/share/tk8.6/entry.tcl
14-Dec-2024 00:19:45 casa-6.6.6-7-py3.10.el8/share/tk8.6/optMenu.tcl
14-Dec-2024 00:19:45 casa-6.6.6-7-py3.10.el8/share/tk8.6/fontchooser.tcl
14-Dec-2024 00:19:45 casa-6.6.6-7-py3.10.el8/bin/
14-Dec-2024 00:19:45 casa-6.6.6-7-py3.10.el8/bin/python3
14-Dec-2024 00:19:45 casa-6.6.6-7-py3.10.el8/bin/casaviewer
14-Dec-2024 00:19:45 casa-6.6.6-7-py3.10.el8/bin/casa
14-Dec-2024 00:19:45 casa-6.6.6-7-py3.10.el8/bin/pip3
14-Dec-2024 00:19:45 casa-6.6.6-7-py3.10.el8/bin/2to3
14-Dec-2024 00:19:45 casa-6.6.6-7-py3.10.el8/bin/mpicasa
14-Dec-2024 00:19:45 casa-6.6.6-7-py3.10.el8/.revstate
14-Dec-2024 00:19:45 0
14-Dec-2024 00:20:14 Executing: ['git', 'clone', 'https://open-bitbucket.nrao.edu/scm/pipe/pipeline.git']
14-Dec-2024 00:20:14 stderr: Cloning into 'pipeline'...
14-Dec-2024 00:20:14 0
14-Dec-2024 00:20:14 Executing: ['git', 'config', '--global', 'user.name', '"bamboo"']
14-Dec-2024 00:20:14 0
14-Dec-2024 00:20:14 Executing: ['git', 'config', '--global', 'user.email', '"bamboo_merge@.nrao.edu"']
14-Dec-2024 00:20:14 0
14-Dec-2024 00:20:14 Executing: ['git', 'checkout', 'main']
14-Dec-2024 00:20:14 stderr: Already on 'main'
14-Dec-2024 00:20:14 Your branch is up to date with 'origin/main'.
14-Dec-2024 00:20:14 0
14-Dec-2024 00:20:14 Executing: ['git', 'merge', 'origin/PIPE-1669-run-dev-pipeline-with-modular-casa6']
14-Dec-2024 00:20:14 Updating e7c2d2fcb..ccf249c42
14-Dec-2024 00:20:14 Fast-forward
14-Dec-2024 00:20:14 .github/workflows/sphinx.yml                       |    57 +
14-Dec-2024 00:20:14 .gitignore                                         |     7 +-
14-Dec-2024 00:20:14 closure-compiler.jar                               |   Bin 8071796 -> 0 bytes
14-Dec-2024 00:20:14 conftest.py                                        |     2 +-
14-Dec-2024 00:20:14 docs/Makefile                                      |    11 +-
14-Dec-2024 00:20:14 docs/README.md                                     |    21 -
14-Dec-2024 00:20:14 docs/README.rst                                    |    35 +
14-Dec-2024 00:20:14 docs/pipeline_docs.yaml                            |    78 -
14-Dec-2024 00:20:14 docs/source/_static/custom_theme.css               |    37 +-
14-Dec-2024 00:20:14 docs/source/_templates/custom-class-template.rst   |    34 +
14-Dec-2024 00:20:14 docs/source/_templates/custom-module-template.rst  |    66 +
14-Dec-2024 00:20:14 docs/source/apisummary.rst                         |   185 +
14-Dec-2024 00:20:14 docs/source/conf.py                                |   220 +-
14-Dec-2024 00:20:14 docs/source/dependencies.rst                       |   107 +
14-Dec-2024 00:20:14 docs/source/develdocmd/building_the_pipeline.md    |   145 +-
14-Dec-2024 00:20:14 docs/source/develdocmd/old_releases.md             |    37 +
14-Dec-2024 00:20:14 docs/source/develdocmd/pipeline_tests.md           |    95 +-
14-Dec-2024 00:20:14 docs/source/develdocmd/recipes.md                  |    42 +
14-Dec-2024 00:20:14 docs/source/examples/test1.ipynb                   |   486 +
14-Dec-2024 00:20:14 .../installation.rst => examples/test2.rst}        |     2 +-
14-Dec-2024 00:20:14 docs/source/index.rst                              |    63 +-
14-Dec-2024 00:20:14 docs/source/latex.rst                              |    20 +-
14-Dec-2024 00:20:14 docs/source/modular.rst                            |   249 +
14-Dec-2024 00:20:14 docs/source/notebooks/context.ipynb                | 11212 +++++++++++++++++++
14-Dec-2024 00:20:14 docs/source/notebooks/tier0dask.ipynb              |  8178 ++++++++++++++
14-Dec-2024 00:20:14 docs/source/pipeline_tasks/pipeline_tasks.rst      |    10 -
14-Dec-2024 00:20:14 docs/source/references/pipeline.bib                |   366 +-
14-Dec-2024 00:20:14 docs/source/releases.rst                           |   206 +
14-Dec-2024 00:20:14 pipe1669.yaml                                      |    32 +
14-Dec-2024 00:20:14 pipeline/__init__.py                               |    48 +-
14-Dec-2024 00:20:14 pipeline/__main__.py                               |   359 +
14-Dec-2024 00:20:14 pipeline/config.py                                 |    41 +
14-Dec-2024 00:20:14 pipeline/domain/antenna.py                         |    77 +-
14-Dec-2024 00:20:14 pipeline/domain/antennaarray.py                    |   131 +-
14-Dec-2024 00:20:14 pipeline/domain/datadescription.py                 |    68 +-
14-Dec-2024 00:20:14 pipeline/domain/datatype.py                        |    21 +-
14-Dec-2024 00:20:14 pipeline/domain/field.py                           |    95 +-
14-Dec-2024 00:20:14 pipeline/domain/fluxmeasurement.py                 |    92 +-
14-Dec-2024 00:20:14 pipeline/domain/measurementset.py                  |   686 +-
14-Dec-2024 00:20:14 pipeline/domain/measures.py                        |   483 +-
14-Dec-2024 00:20:14 pipeline/domain/observingrun.py                    |   206 +-
14-Dec-2024 00:20:14 pipeline/domain/polarization.py                    |    37 +-
14-Dec-2024 00:20:14 pipeline/domain/scan.py                            |    94 +-
14-Dec-2024 00:20:14 pipeline/domain/source.py                          |   111 +-
14-Dec-2024 00:20:14 pipeline/domain/spectralwindow.py                  |   407 +-
14-Dec-2024 00:20:14 pipeline/domain/state.py                           |   160 +-
14-Dec-2024 00:20:14 pipeline/environment.py                            |   176 +-
14-Dec-2024 00:20:14 pipeline/extern/TsysDataClassFile.py               |     5 +-
14-Dec-2024 00:20:14 pipeline/extern/almahelpers.py                     |   766 ++
14-Dec-2024 00:20:14 pipeline/hif/tasks/makeimages/makeimages.py        |    36 +-
14-Dec-2024 00:20:14 pipeline/hif/tasks/makermsimages/makermsimages.py  |    17 +-
14-Dec-2024 00:20:14 pipeline/hif/tasks/selfcal/selfcal.py              |     8 +-
14-Dec-2024 00:20:14 pipeline/hifa/tasks/__init__.py                    |     2 +-
14-Dec-2024 00:20:14 pipeline/hifa/tasks/polcal/renderer.py             |     2 +-
14-Dec-2024 00:20:14 pipeline/hifa/tasks/tsysflag/__init__.py           |     4 +-
14-Dec-2024 00:20:14 pipeline/hifa/tasks/tsysflag/tsysflag.py           |     4 +-
14-Dec-2024 00:20:14 pipeline/hsd/tasks/baseline/simplegrid.py          |     3 +-
14-Dec-2024 00:20:14 pipeline/hsd/tasks/baseline/validation.py          |     2 +-
14-Dec-2024 00:20:14 pipeline/hsd/tasks/imaging/gridding.py             |     3 +-
14-Dec-2024 00:20:14 pipeline/infrastructure/basetask.py                |     5 +-
14-Dec-2024 00:20:14 pipeline/infrastructure/casa_tasks.py              |    48 +-
14-Dec-2024 00:20:14 pipeline/infrastructure/daskhelpers.py             |    70 +
14-Dec-2024 00:20:14 pipeline/infrastructure/jobrequest.py              |    28 +-
14-Dec-2024 00:20:14 pipeline/infrastructure/logging.py                 |    16 +-
14-Dec-2024 00:20:14 pipeline/infrastructure/mpihelpers.py              |    67 +-
14-Dec-2024 00:20:14 pipeline/infrastructure/sessionutils.py            |    13 +-
14-Dec-2024 00:20:14 pipeline/infrastructure/utils/__init__.py          |     6 +-
14-Dec-2024 00:20:14 pipeline/infrastructure/utils/casa_data.py         |    10 +-
14-Dec-2024 00:20:14 pipeline/infrastructure/utils/conversion.py        |     6 +-
14-Dec-2024 00:20:14 pipeline/infrastructure/utils/diagnostics.py       |     2 +-
14-Dec-2024 00:20:14 pipeline/infrastructure/utils/framework.py         |    16 +-
14-Dec-2024 00:20:14 .../{regression-tester.py => regression_tester.py} |     0
14-Dec-2024 00:20:14 pipeline/infrastructure/utils/subprocess.py        |    14 -
14-Dec-2024 00:20:14 pipeline/infrastructure/utils/utils.py             |     5 +-
14-Dec-2024 00:20:14 pipeline/infrastructure/version.py                 |   472 +-
14-Dec-2024 00:20:14 .../tests/test_procedure_hifa_calimage_tier0.xml   |   395 +
14-Dec-2024 00:20:14 pipeline/runpipeline.py                            |     3 +-
14-Dec-2024 00:20:14 pipeline/runvlapipeline.py                         |     3 +-
14-Dec-2024 00:20:14 pyproject.toml                                     |    54 +
14-Dec-2024 00:20:14 requirements.txt                                   |     6 +-
14-Dec-2024 00:20:14 requirements_dev.txt                               |    23 +
14-Dec-2024 00:20:14 .../requirements_docs.txt => requirements_docs.txt |    25 +-
14-Dec-2024 00:20:14 requirements_exp.txt                               |    24 +
14-Dec-2024 00:20:14 setup.py                                           |   128 +-
14-Dec-2024 00:20:14 84 files changed, 25750 insertions(+), 1836 deletions(-)
14-Dec-2024 00:20:14 create mode 100644 .github/workflows/sphinx.yml
14-Dec-2024 00:20:14 delete mode 100644 closure-compiler.jar
14-Dec-2024 00:20:14 delete mode 100644 docs/README.md
14-Dec-2024 00:20:14 create mode 100644 docs/README.rst
14-Dec-2024 00:20:14 delete mode 100644 docs/pipeline_docs.yaml
14-Dec-2024 00:20:14 create mode 100644 docs/source/_templates/custom-class-template.rst
14-Dec-2024 00:20:14 create mode 100644 docs/source/_templates/custom-module-template.rst
14-Dec-2024 00:20:14 create mode 100644 docs/source/apisummary.rst
14-Dec-2024 00:20:14 create mode 100644 docs/source/dependencies.rst
14-Dec-2024 00:20:14 create mode 100644 docs/source/develdocmd/old_releases.md
14-Dec-2024 00:20:14 create mode 100644 docs/source/develdocmd/recipes.md
14-Dec-2024 00:20:14 create mode 100644 docs/source/examples/test1.ipynb
14-Dec-2024 00:20:14 rename docs/source/{rst_examples/installation.rst => examples/test2.rst} (88%)
14-Dec-2024 00:20:14 create mode 100644 docs/source/modular.rst
14-Dec-2024 00:20:14 create mode 100644 docs/source/notebooks/context.ipynb
14-Dec-2024 00:20:14 create mode 100644 docs/source/notebooks/tier0dask.ipynb
14-Dec-2024 00:20:14 delete mode 100644 docs/source/pipeline_tasks/pipeline_tasks.rst
14-Dec-2024 00:20:14 create mode 100644 docs/source/releases.rst
14-Dec-2024 00:20:14 create mode 100644 pipe1669.yaml
14-Dec-2024 00:20:14 create mode 100644 pipeline/__main__.py
14-Dec-2024 00:20:14 create mode 100644 pipeline/config.py
14-Dec-2024 00:20:14 create mode 100644 pipeline/extern/almahelpers.py
14-Dec-2024 00:20:14 create mode 100644 pipeline/infrastructure/daskhelpers.py
14-Dec-2024 00:20:14 rename pipeline/infrastructure/utils/{regression-tester.py => regression_tester.py} (100%)
14-Dec-2024 00:20:14 delete mode 100644 pipeline/infrastructure/utils/subprocess.py
14-Dec-2024 00:20:14 create mode 100644 pipeline/recipes/tests/test_procedure_hifa_calimage_tier0.xml
14-Dec-2024 00:20:14 create mode 100644 pyproject.toml
14-Dec-2024 00:20:14 create mode 100644 requirements_dev.txt
14-Dec-2024 00:20:14 rename docs/requirements_docs.txt => requirements_docs.txt (57%)
14-Dec-2024 00:20:14 create mode 100644 requirements_exp.txt
14-Dec-2024 00:20:14 0
14-Dec-2024 00:20:14 casadir: casa-6.6.6-7-py3.10.el8
14-Dec-2024 00:20:14 fullpath: /home/casatest/casa-build-utils/pipeline/workdir/casa-6.6.6-7-py3.10.el8
14-Dec-2024 00:20:14 {'HOSTNAME': '99b427190d57', 'PWD': '/home/casatest/casa-build-utils/pipeline', 'HOME': '/home/casatest', 'SHLVL': '1', 'PATH': '/home/casatest/casa-build-utils/pipeline/workdir/casa-6.6.6-7-py3.10.el8:/home/casatest/casa-build-utils/pipeline/workdir/casa-6.6.6-7-py3.10.el8/bin:/home/casatest/casa-build-utils/pipeline/workdir/pipeline:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin', 'OLDPWD': '/home/casatest', '_': '/usr/local/bin/python3.8', 'LC_CTYPE': 'C.UTF-8'}
14-Dec-2024 00:21:31 Executing: ['/home/casatest/casa-build-utils/pipeline/workdir/casa-6.6.6-7-py3.10.el8/bin/pip3', 'install', '--extra-index-url=https://pypi.org/simple', '--disable-pip-version-check', '--use-pep517', '--upgrade-strategy=only-if-needed', 'numpy==1.23.5', '-r', '/home/casatest/casa-build-utils/pipeline/workdir/pipeline/requirements.txt']
14-Dec-2024 00:21:31 Looking in indexes: https://pypi.org/simple, https://pypi.org/simple
14-Dec-2024 00:21:31 Ignoring astropy: markers 'python_version < "3.10"' don't match your environment
14-Dec-2024 00:21:31 Ignoring bdsf: markers 'python_version < "3.10" or sys_platform == "darwin"' don't match your environment
14-Dec-2024 00:21:31 Collecting numpy==1.23.5
14-Dec-2024 00:21:31   Downloading numpy-1.23.5-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (17.1 MB)
14-Dec-2024 00:21:31      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 17.1/17.1 MB ? eta 0:00:00
14-Dec-2024 00:21:31 Collecting csscompressor==0.9.5
14-Dec-2024 00:21:31   Downloading csscompressor-0.9.5.tar.gz (237 kB)
14-Dec-2024 00:21:31      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 237.8/237.8 kB 5.1 MB/s eta 0:00:00
14-Dec-2024 00:21:31   Installing build dependencies: started
14-Dec-2024 00:21:31   Installing build dependencies: finished with status 'done'
14-Dec-2024 00:21:31   Getting requirements to build wheel: started
14-Dec-2024 00:21:31   Getting requirements to build wheel: finished with status 'done'
14-Dec-2024 00:21:31   Preparing metadata (pyproject.toml): started
14-Dec-2024 00:21:31   Preparing metadata (pyproject.toml): finished with status 'done'
14-Dec-2024 00:21:31 Collecting cachetools==5.5.0
14-Dec-2024 00:21:31   Downloading cachetools-5.5.0-py3-none-any.whl (9.5 kB)
14-Dec-2024 00:21:31 Collecting mako==1.3.5
14-Dec-2024 00:21:31   Downloading Mako-1.3.5-py3-none-any.whl (78 kB)
14-Dec-2024 00:21:31      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 78.6/78.6 kB 7.9 MB/s eta 0:00:00
14-Dec-2024 00:21:31 Collecting pypubsub==4.0.3
14-Dec-2024 00:21:31   Downloading Pypubsub-4.0.3-py3-none-any.whl (61 kB)
14-Dec-2024 00:21:31      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 61.4/61.4 kB 7.0 MB/s eta 0:00:00
14-Dec-2024 00:21:31 Collecting intervaltree==3.1.0
14-Dec-2024 00:21:31   Downloading intervaltree-3.1.0.tar.gz (32 kB)
14-Dec-2024 00:21:31   Installing build dependencies: started
14-Dec-2024 00:21:31   Installing build dependencies: finished with status 'done'
14-Dec-2024 00:21:31   Getting requirements to build wheel: started
14-Dec-2024 00:21:31   Getting requirements to build wheel: finished with status 'done'
14-Dec-2024 00:21:31   Preparing metadata (pyproject.toml): started
14-Dec-2024 00:21:31   Preparing metadata (pyproject.toml): finished with status 'done'
14-Dec-2024 00:21:31 Collecting logutils==0.3.5
14-Dec-2024 00:21:31   Downloading logutils-0.3.5.tar.gz (27 kB)
14-Dec-2024 00:21:31   Installing build dependencies: started
14-Dec-2024 00:21:31   Installing build dependencies: finished with status 'done'
14-Dec-2024 00:21:31   Getting requirements to build wheel: started
14-Dec-2024 00:21:31   Getting requirements to build wheel: finished with status 'done'
14-Dec-2024 00:21:31   Preparing metadata (pyproject.toml): started
14-Dec-2024 00:21:31   Preparing metadata (pyproject.toml): finished with status 'done'
14-Dec-2024 00:21:31 Collecting ps_mem==3.14
14-Dec-2024 00:21:31   Downloading ps_mem-3.14-py2.py3-none-any.whl (19 kB)
14-Dec-2024 00:21:31 Collecting astropy==6.1.4
14-Dec-2024 00:21:31   Downloading astropy-6.1.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (10.0 MB)
14-Dec-2024 00:21:31      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 10.0/10.0 MB 28.6 MB/s eta 0:00:00
14-Dec-2024 00:21:31 Collecting MarkupSafe>=0.9.2
14-Dec-2024 00:21:31   Downloading MarkupSafe-3.0.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (20 kB)
14-Dec-2024 00:21:31 Collecting sortedcontainers<3.0,>=2.0
14-Dec-2024 00:21:31   Downloading sortedcontainers-2.4.0-py2.py3-none-any.whl (29 kB)
14-Dec-2024 00:21:31 Collecting astropy-iers-data>=0.2024.8.27.10.28.29
14-Dec-2024 00:21:31   Downloading astropy_iers_data-0.2024.12.9.0.36.21-py3-none-any.whl (1.9 MB)
14-Dec-2024 00:21:31      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.9/1.9 MB 31.1 MB/s eta 0:00:00
14-Dec-2024 00:21:31 Collecting PyYAML>=3.13
14-Dec-2024 00:21:31   Downloading PyYAML-6.0.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (751 kB)
14-Dec-2024 00:21:31      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 751.2/751.2 kB 21.6 MB/s eta 0:00:00
14-Dec-2024 00:21:31 Requirement already satisfied: packaging>=19.0 in /home/casatest/casa-build-utils/pipeline/workdir/casa-6.6.6-7-py3.10.el8/lib/py/lib/python3.10/site-packages (from astropy==6.1.4->-r /home/casatest/casa-build-utils/pipeline/workdir/pipeline/requirements.txt (line 32)) (24.1)
14-Dec-2024 00:21:31 Requirement already satisfied: pyerfa>=2.0.1.1 in /home/casatest/casa-build-utils/pipeline/workdir/casa-6.6.6-7-py3.10.el8/lib/py/lib/python3.10/site-packages (from astropy==6.1.4->-r /home/casatest/casa-build-utils/pipeline/workdir/pipeline/requirements.txt (line 32)) (2.0.1.4)
14-Dec-2024 00:21:31 Building wheels for collected packages: csscompressor, intervaltree, logutils
14-Dec-2024 00:21:31   Building wheel for csscompressor (pyproject.toml): started
14-Dec-2024 00:21:31   Building wheel for csscompressor (pyproject.toml): finished with status 'done'
14-Dec-2024 00:21:31   Created wheel for csscompressor: filename=csscompressor-0.9.5-py3-none-any.whl size=240333 sha256=95c49df0a8d511df7d60510f3fa8e970da17f7c73f8323fd2ed87a74354b43ef
14-Dec-2024 00:21:31   Stored in directory: /home/casatest/.cache/pip/wheels/74/75/00/e4b2f02c36016a6df23980e58d041705aa9bea376b1600d42f
14-Dec-2024 00:21:31   Building wheel for intervaltree (pyproject.toml): started
14-Dec-2024 00:21:31   Building wheel for intervaltree (pyproject.toml): finished with status 'done'
14-Dec-2024 00:21:31   Created wheel for intervaltree: filename=intervaltree-3.1.0-py2.py3-none-any.whl size=26097 sha256=54d6cb286fa294017ec66f15b19ac4349a1935cd6446a296fc80de08df454dce
14-Dec-2024 00:21:31   Stored in directory: /home/casatest/.cache/pip/wheels/f1/52/97/0884d240db33fb0bbc0c2c9549ff13f6a81ec91bf0c1807615
14-Dec-2024 00:21:31   Building wheel for logutils (pyproject.toml): started
14-Dec-2024 00:21:31   Building wheel for logutils (pyproject.toml): finished with status 'done'
14-Dec-2024 00:21:31   Created wheel for logutils: filename=logutils-0.3.5-py3-none-any.whl size=19928 sha256=ec15361c7a65b70831a6e6668ad089286ac145049537bf16a170594c36d7bc8b
14-Dec-2024 00:21:31   Stored in directory: /home/casatest/.cache/pip/wheels/fa/b9/12/e139e8d532cc359011f4a8a9586ee962882e4a99d214262b67
14-Dec-2024 00:21:31 Successfully built csscompressor intervaltree logutils
14-Dec-2024 00:21:31 Installing collected packages: sortedcontainers, ps_mem, logutils, csscompressor, PyYAML, pypubsub, numpy, MarkupSafe, intervaltree, cachetools, astropy-iers-data, mako, astropy
14-Dec-2024 00:21:31   Attempting uninstall: numpy
14-Dec-2024 00:21:31     Found existing installation: numpy 2.0.1
14-Dec-2024 00:21:31     Uninstalling numpy-2.0.1:
14-Dec-2024 00:21:31       Successfully uninstalled numpy-2.0.1
14-Dec-2024 00:21:31 Successfully installed MarkupSafe-3.0.2 PyYAML-6.0.2 astropy-6.1.4 astropy-iers-data-0.2024.12.9.0.36.21 cachetools-5.5.0 csscompressor-0.9.5 intervaltree-3.1.0 logutils-0.3.5 mako-1.3.5 numpy-1.23.5 ps_mem-3.14 pypubsub-4.0.3 sortedcontainers-2.4.0
14-Dec-2024 00:21:31 0
14-Dec-2024 00:21:31 Executing: ['/home/casatest/casa-build-utils/pipeline/workdir/casa-6.6.6-7-py3.10.el8/bin/pip3', 'install', '.']
14-Dec-2024 00:21:31 Processing /home/casatest/casa-build-utils/pipeline/workdir/pipeline
14-Dec-2024 00:21:31   Installing build dependencies: started
14-Dec-2024 00:21:31   Installing build dependencies: finished with status 'done'
14-Dec-2024 00:21:31   Getting requirements to build wheel: started
14-Dec-2024 00:21:31   Getting requirements to build wheel: finished with status 'done'
14-Dec-2024 00:21:31   Preparing metadata (pyproject.toml): started
14-Dec-2024 00:21:31   Preparing metadata (pyproject.toml): finished with status 'done'
14-Dec-2024 00:21:31 Requirement already satisfied: ps_mem==3.14 in /home/casatest/casa-build-utils/pipeline/workdir/casa-6.6.6-7-py3.10.el8/lib/py/lib/python3.10/site-packages (from Pipeline==2024.2.0.4+141.gccf249c42) (3.14)
14-Dec-2024 00:21:31 Requirement already satisfied: intervaltree==3.1.0 in /home/casatest/casa-build-utils/pipeline/workdir/casa-6.6.6-7-py3.10.el8/lib/py/lib/python3.10/site-packages (from Pipeline==2024.2.0.4+141.gccf249c42) (3.1.0)
14-Dec-2024 00:21:31 Requirement already satisfied: astropy==6.1.4 in /home/casatest/casa-build-utils/pipeline/workdir/casa-6.6.6-7-py3.10.el8/lib/py/lib/python3.10/site-packages (from Pipeline==2024.2.0.4+141.gccf249c42) (6.1.4)
14-Dec-2024 00:21:31 Requirement already satisfied: cachetools==5.5.0 in /home/casatest/casa-build-utils/pipeline/workdir/casa-6.6.6-7-py3.10.el8/lib/py/lib/python3.10/site-packages (from Pipeline==2024.2.0.4+141.gccf249c42) (5.5.0)
14-Dec-2024 00:21:31 Requirement already satisfied: logutils==0.3.5 in /home/casatest/casa-build-utils/pipeline/workdir/casa-6.6.6-7-py3.10.el8/lib/py/lib/python3.10/site-packages (from Pipeline==2024.2.0.4+141.gccf249c42) (0.3.5)
14-Dec-2024 00:21:31 Requirement already satisfied: mako==1.3.5 in /home/casatest/casa-build-utils/pipeline/workdir/casa-6.6.6-7-py3.10.el8/lib/py/lib/python3.10/site-packages (from Pipeline==2024.2.0.4+141.gccf249c42) (1.3.5)
14-Dec-2024 00:21:31 Requirement already satisfied: pypubsub==4.0.3 in /home/casatest/casa-build-utils/pipeline/workdir/casa-6.6.6-7-py3.10.el8/lib/py/lib/python3.10/site-packages (from Pipeline==2024.2.0.4+141.gccf249c42) (4.0.3)
14-Dec-2024 00:21:43 Requirement already satisfied: csscompressor==0.9.5 in /home/casatest/casa-build-utils/pipeline/workdir/casa-6.6.6-7-py3.10.el8/lib/py/lib/python3.10/site-packages (from Pipeline==2024.2.0.4+141.gccf249c42) (0.9.5)
14-Dec-2024 00:21:43 Requirement already satisfied: numpy>=1.23 in /home/casatest/casa-build-utils/pipeline/workdir/casa-6.6.6-7-py3.10.el8/lib/py/lib/python3.10/site-packages (from astropy==6.1.4->Pipeline==2024.2.0.4+141.gccf249c42) (1.23.5)
14-Dec-2024 00:21:43 Requirement already satisfied: PyYAML>=3.13 in /home/casatest/casa-build-utils/pipeline/workdir/casa-6.6.6-7-py3.10.el8/lib/py/lib/python3.10/site-packages (from astropy==6.1.4->Pipeline==2024.2.0.4+141.gccf249c42) (6.0.2)
14-Dec-2024 00:21:43 Requirement already satisfied: pyerfa>=2.0.1.1 in /home/casatest/casa-build-utils/pipeline/workdir/casa-6.6.6-7-py3.10.el8/lib/py/lib/python3.10/site-packages (from astropy==6.1.4->Pipeline==2024.2.0.4+141.gccf249c42) (2.0.1.4)
14-Dec-2024 00:21:43 Requirement already satisfied: astropy-iers-data>=0.2024.8.27.10.28.29 in /home/casatest/casa-build-utils/pipeline/workdir/casa-6.6.6-7-py3.10.el8/lib/py/lib/python3.10/site-packages (from astropy==6.1.4->Pipeline==2024.2.0.4+141.gccf249c42) (0.2024.12.9.0.36.21)
14-Dec-2024 00:21:43 Requirement already satisfied: packaging>=19.0 in /home/casatest/casa-build-utils/pipeline/workdir/casa-6.6.6-7-py3.10.el8/lib/py/lib/python3.10/site-packages (from astropy==6.1.4->Pipeline==2024.2.0.4+141.gccf249c42) (24.1)
14-Dec-2024 00:21:43 Requirement already satisfied: sortedcontainers<3.0,>=2.0 in /home/casatest/casa-build-utils/pipeline/workdir/casa-6.6.6-7-py3.10.el8/lib/py/lib/python3.10/site-packages (from intervaltree==3.1.0->Pipeline==2024.2.0.4+141.gccf249c42) (2.4.0)
14-Dec-2024 00:21:43 Requirement already satisfied: MarkupSafe>=0.9.2 in /home/casatest/casa-build-utils/pipeline/workdir/casa-6.6.6-7-py3.10.el8/lib/py/lib/python3.10/site-packages (from mako==1.3.5->Pipeline==2024.2.0.4+141.gccf249c42) (3.0.2)
14-Dec-2024 00:21:43 Building wheels for collected packages: Pipeline
14-Dec-2024 00:21:43   Building wheel for Pipeline (pyproject.toml): started
14-Dec-2024 00:21:43   Building wheel for Pipeline (pyproject.toml): finished with status 'done'
14-Dec-2024 00:21:43   Created wheel for Pipeline: filename=Pipeline-2024.2.0.4+141.gccf249c42-py3-none-any.whl size=4122634 sha256=2b8d33ed1c782c4807b66e68e23992604780433442f7d02b2ea877b00d35878d
14-Dec-2024 00:21:43   Stored in directory: /tmp/pip-ephem-wheel-cache-mr7ulabo/wheels/7e/4c/71/bd7963ad57705c5c4c611d608b708d19a5fa10d4d8417e129b
14-Dec-2024 00:21:43 Successfully built Pipeline
14-Dec-2024 00:21:43 Installing collected packages: Pipeline
14-Dec-2024 00:21:43 Successfully installed Pipeline-2024.2.0.4+141.gccf249c42
14-Dec-2024 00:21:43 stderr:
14-Dec-2024 00:21:43 stderr: [notice] A new release of pip available: 22.3.1 -> 24.3.1
14-Dec-2024 00:21:43 stderr: [notice] To update, run: pip install --upgrade pip
14-Dec-2024 00:21:43 0
14-Dec-2024 00:21:43 Executing: ['/home/casatest/casa-build-utils/pipeline/workdir/casa-6.6.6-7-py3.10.el8/bin/python3', '-m', 'pytest', '/home/casatest/casa-build-utils/pipeline/workdir/pipeline', '--junitxml=/home/casatest/casa-build-utils/pipeline/workdir/pipeline_test_result.xml']
14-Dec-2024 00:21:43 stderr:
14-Dec-2024 00:21:43 stderr: data_update: path must exist as a directory and it must be owned by the user, path = /home/casatest/.casa/data
14-Dec-2024 00:21:43 stderr:
14-Dec-2024 00:21:43 stderr: Warning: measurespath must exist as a directory and it must be owned by the user.
14-Dec-2024 00:21:43 stderr: Warning: no auto update is possible on this measurespath by this user.
14-Dec-2024 00:21:43 stderr:
14-Dec-2024 00:21:43 stderr: The expected casa data was not found at measurespath. CASA may still work if the data can be found in datapath.
14-Dec-2024 00:21:43 stderr: The expected measures data was not found at measurespath. CASA may still work if the data can be found in datapath.
14-Dec-2024 00:21:43 stderr: visit https://casadocs.readthedocs.io/en/stable/notebooks/external-data.html for more information
14-Dec-2024 00:21:43 stderr:
14-Dec-2024 00:21:43 stderr: 2024-12-14 05:21:43        SEVERE        ::casa        
14-Dec-2024 00:21:43 stderr: 2024-12-14 05:21:43        SEVERE        ::casa        data_update: path must exist as a directory and it must be owned by the user, path = /home/casatest/.casa/data
14-Dec-2024 00:21:43 stderr: 2024-12-14 05:21:43        SEVERE        ::casa        
14-Dec-2024 00:21:43 stderr: 2024-12-14 05:21:43        SEVERE        ::casa        Warning: measurespath must exist as a directory and it must be owned by the user.
14-Dec-2024 00:21:43 stderr: 2024-12-14 05:21:43        SEVERE        ::casa        Warning: no auto update is possible on this measurespath by this user.
14-Dec-2024 00:21:43 stderr: 2024-12-14 05:21:43        SEVERE        ::casa        
14-Dec-2024 00:21:43 stderr: 2024-12-14 05:21:43        SEVERE        ::casa        The expected casa data was not found at measurespath. CASA may still work if the data can be found in datapath.
14-Dec-2024 00:21:43 stderr: 2024-12-14 05:21:43        SEVERE        ::casa        The expected measures data was not found at measurespath. CASA may still work if the data can be found in datapath.
14-Dec-2024 00:21:43 stderr: 2024-12-14 05:21:43        SEVERE        ::casa        visit https://casadocs.readthedocs.io/en/stable/notebooks/external-data.html for more information
14-Dec-2024 00:21:43 stderr: 2024-12-14 05:21:43        SEVERE        ::casa        
14-Dec-2024 00:21:43 stderr: ImportError while loading conftest '/home/casatest/casa-build-utils/pipeline/workdir/pipeline/conftest.py'.
14-Dec-2024 00:21:43 stderr: conftest.py:8: in <module>
14-Dec-2024 00:21:43 stderr:     from casatasks import casalog
14-Dec-2024 00:21:43 stderr: ../casa-6.6.6-7-py3.10.el8/lib/py/lib/python3.10/site-packages/casatasks/__init__.py:5: in <module>
14-Dec-2024 00:21:43 stderr:     from casatools import logsink as _logsink
14-Dec-2024 00:21:43 stderr: ../casa-6.6.6-7-py3.10.el8/lib/py/lib/python3.10/site-packages/casatools/__init__.py:257: in <module>
14-Dec-2024 00:21:43 stderr:     raise config_except
14-Dec-2024 00:21:43 stderr: ../casa-6.6.6-7-py3.10.el8/lib/py/lib/python3.10/site-packages/casatools/__init__.py:116: in <module>
14-Dec-2024 00:21:43 stderr:     do_auto_updates(config, logger)
14-Dec-2024 00:21:43 stderr: ../casa-6.6.6-7-py3.10.el8/lib/py/lib/python3.10/site-packages/casaconfig/private/do_auto_updates.py:73: in do_auto_updates
14-Dec-2024 00:21:43 stderr:     data_update(configDict.measurespath, logger=logger, auto_update_rules=True, verbose=verbose)
14-Dec-2024 00:21:43 stderr: ../casa-6.6.6-7-py3.10.el8/lib/py/lib/python3.10/site-packages/casaconfig/private/data_update.py:158: in data_update
14-Dec-2024 00:21:43 stderr:     raise AutoUpdatesNotAllowed("data_update: path must exist as a directory and it must be owned by the user, path = %s" % path)
14-Dec-2024 00:21:43 stderr: E   casaconfig.private.CasaconfigErrors.AutoUpdatesNotAllowed: data_update: path must exist as a directory and it must be owned by the user, path = /home/casatest/.casa/data
14-Dec-2024 00:21:43 measures data is not available
14-Dec-2024 00:21:43 4
14-Dec-2024 00:21:43 mkdir: cannot create directory 'workdir': File exists
14-Dec-2024 00:21:48 cp: cannot stat '/home/casatest/casa-build-utils/pipeline/workdir/pipeline_test_result.xml': No such file or directory
14-Dec-2024 00:21:48 chown: cannot access '/pkgout/*': No such file or directory
14-Dec-2024 00:21:48 Failing task since return code of [/export/home/cbt-pipeline-test/ci-workspace/bamboohome/temp/PIPE-PPRT770-PPT666-59-ScriptBuildTask-7272509807377285395.sh] was 1 while expected 0
14-Dec-2024 00:21:48 Finished task 'Test' with result: Failed
14-Dec-2024 00:21:48 Starting task 'Cleanup' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script'
14-Dec-2024 00:21:48
Beginning to execute external process for build 'Pipeline - Pipeline Pull Request Test - PIPE-1669-run-dev-pipeline-with-modular-casa6 - Pipeline PR Test 6.6.6 #59 (PIPE-PPRT770-PPT666-59)'
... running command line:
/export/home/cbt-pipeline-test/ci-workspace/bamboohome/temp/PIPE-PPRT770-PPT666-59-ScriptBuildTask-390934414498305338.sh
... in: /export/home/cbt-pipeline-test/ci-workspace/bamboohome/xml-data/build-dir/PIPE-PPRT770-PPT666
14-Dec-2024 00:21:48 Starting cleanup
14-Dec-2024 00:21:48 Error response from daemon: No such container: pipeline-test
14-Dec-2024 00:21:48 Error response from daemon: No such container: pipeline-test
14-Dec-2024 00:21:48 Cleanup complete
14-Dec-2024 00:21:48 Finished task 'Cleanup' with result: Success
14-Dec-2024 00:21:48 Running post build plugin 'Docker Container Cleanup'
14-Dec-2024 00:21:48
Beginning to execute external process for build 'Pipeline - Pipeline Pull Request Test - PIPE-1669-run-dev-pipeline-with-modular-casa6 - Pipeline PR Test 6.6.6 #59 (PIPE-PPRT770-PPT666-59)'
... running command line:
/usr/bin/docker rm -f pipelinetest
... in: /export/home/cbt-pipeline-test/ci-workspace/bamboohome/xml-data/build-dir/PIPE-PPRT770-PPT666
14-Dec-2024 00:21:57 pipelinetest
14-Dec-2024 00:21:57 Running post build plugin 'NCover Results Collector'
14-Dec-2024 00:21:57 Running post build plugin 'Build Results Label Collector'
14-Dec-2024 00:21:57 Running post build plugin 'Clover Results Collector'
14-Dec-2024 00:21:57 Running post build plugin 'npm Cache Cleanup'
14-Dec-2024 00:21:57 Running post build plugin 'Artifact Copier'
14-Dec-2024 00:21:57 Publishing an artifact: Result xml
14-Dec-2024 00:21:57 Failing as no matching files has been found and empty artifacts are not allowed.
14-Dec-2024 00:21:57 Unable to publish artifact [Result xml]:
14-Dec-2024 00:21:57 The artifact is required, build will now fail.
14-Dec-2024 00:21:57 The artifact hasn't been successfully published after 50.14 ms
14-Dec-2024 00:21:57 Finalising the build...
14-Dec-2024 00:21:57 Stopping timer.
14-Dec-2024 00:21:57 Build PIPE-PPRT770-PPT666-59 completed.
14-Dec-2024 00:21:58 Running on server: post build plugin 'Build Hanging Detection Configuration'
14-Dec-2024 00:21:58 Running on server: post build plugin 'NCover Results Collector'
14-Dec-2024 00:21:58 Running on server: post build plugin 'Build Labeller'
14-Dec-2024 00:21:58 Running on server: post build plugin 'Clover Delta Calculator'
14-Dec-2024 00:21:58 Running on server: post build plugin 'Maven Dependencies Postprocessor'
14-Dec-2024 00:21:58 All post build plugins have finished
14-Dec-2024 00:21:58 Generating build results summary...
14-Dec-2024 00:21:58 Saving build results to disk...
14-Dec-2024 00:21:58 Store variable context...
14-Dec-2024 00:21:58 Finished building PIPE-PPRT770-PPT666-59.