Build: #26 was successful Changes by Rui Xue <rx.astro@gmail.com>
Code commits
Pipeline
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Rui Xue <rx.astro@gmail.com> 38e875e1b34feb7aec6f47ea5ffb4fd4024396ca
Merge remote-tracking branch 'origin/main' into docs/PIPE-2738-migrate-cli-documentation
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Shawn Booth 7b4b761df7dc444059837a8201775dbe9b74ec10 m
Pull request #1743: PIPE-1836: Clean Up Deprecation Warnings
Merge in PIPE/pipeline from pipe-1836-clean-up-deprecation-warnings to main
* commit 'bb482b1f169f76d0610ff8b695fafc94f0b37405':
PIPE-2666: fixed indentation issue in mako file
PIPE-2663: added explicit data format 'o' to mimic plot_date default
PIPE-1836: improved numpy code per reviewer comments
PIPE-1836: removed more deprecated newshape keyword arguments
PIPE-1836: remove deprecated newshape keyword argument in np.reshape; added filter argument to tar.extractall calls
PIPE-2665: fixed additional array-to-scalar deprecation warnings; switched deprecated fig.set_constrained_layout_pads call in favor of fig.get_layout_engine().set
PIPE-1836: fixed numpy rename leading to import error
PIPE-2984: fixed pyparsing deprecation warnings in conversion.py
PIPE-1836: changed deprecated interpolation parameter in numpy.percentile to use method name instead
PIPE-2666: replace use of deprecated matplotlib.pyplot.cm.get_cmap
PIPE-2665: fixed numpy scalar conversion warnings when converting an array to a scalar
PIPE-2663: converted all deprecated calls to pyplot.plot_date to pyplot.plot -
Luke Maud c51d15a957cd2cf7aa627407563c3836d2577c2d m
Pull request #1765: PIPE-2932 change fraction flag limit to 0.5 and logics to equal and greater than
Merge in PIPE/pipeline from PIPE-2932-stop-hifa_diffgaincal-from-also-flagging-target-solutions-when-some-scan-groups-are-fully to main
* commit '6357f6a46b48c324e28a1bbec8a4909fa5f7f9db':
PIPE-2932 update comment with comma
PIPE-2932 change fraction flag limit to 0.5 and logics to equal and greater than -
Kristin Berry 6357f6a46b48c324e28a1bbec8a4909fa5f7f9db m
PIPE-2932 update comment with comma
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Rui Xue 5f73f8ce047cc9d78f02675f1755fa8bb243e808 m
Pull request #1752: PIPE-1677: multiple mses in vlass imaging pipeline
Merge in PIPE/pipeline from PIPE-1677-multiple-mses-in-vlass-imaging-pipeline to main
* commit '4fa7558f183f744ef44c52687ea70abdbe63022b':
PIPE-1677: Refactor `get_sourcename` method in `ImageParamsHeuristics` for improved readability
PIPE-1677: Refactor logging statements in `ImageParamsHeuristics` and `ImageParamsHeuristicsVlassQl`
PIPE-1677: Update `is_eph_obj` method in VLASS heuristics to include type hints and detailed docstrings
PIPE-1677: Remove the `spwsel_lsrk` specification workaround for multi-MS case.
PIPE-1667: Override `is_eph_obj` in `ImageParamsHeuristicsVlassQl` to disable ephemeris checks
PIPE-1677: Add multi-MS support for the VLASS imaging pipeline in `hif_editimlist`, `hif_makeimages`/`hif_tclean`, and imaging heuristics classes.
PIPE-1677: Support multiple MSes in `Transformimagedata`
PIPE-1677: Improve `vlass_selfcal.mako` for better multi-vis support
PIPE-1677: Adjust `hifv_checkflag` summary rendering for better multi-vis support
PIPE-1677: Refactor `hifv_statwt` rendering to support multiple MSes for VLASS
PIPE-1677: Convert `hifv_exportvlassdata` to a "multi-vis" task and add support for archiving multiple self-calibration tables and flag versions -
Rui Xue 4fa7558f183f744ef44c52687ea70abdbe63022b m
PIPE-1677: Refactor `get_sourcename` method in `ImageParamsHeuristics` for improved readability
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Luke Maud 464b85b3f776af89d91eb7e023091e2eee133dde m
Pull request #1740: PIPE-2901 add commentary explanations into hifa heursitics snr code
Merge in PIPE/pipeline from PIPE-2901-add-commentary-explanations-into-hifa-heursitics-snr-code to main
* commit 'd43d5679e37928cbc9f1d50a362290982cb42343':
PIPE-2901: Improve comments and variable naming in SNR calculations for clarity
PIPE-2901: Fix some minor typos with small codestyle updates
PIPE-2901: updated gaincalSNR function in fluxscale/qa.py for compatability with snr.py calculations
PIPE-2901: correct all parameters nbaselines to nEffectiveAntennas
PIPE-2901: edit to n-3 equation and rename nbaselines to nEffectiveAntennas
add PIPE-2901 explination and update hard coded ant numbers to fiducal variable -
Rui Xue d43d5679e37928cbc9f1d50a362290982cb42343 m
PIPE-2901: Improve comments and variable naming in SNR calculations for clarity
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Rui Xue a8a3f62d8cc3c19a44797d23af0ff9f091b455ed m
Pull request #1763: PIPE-3004: Refactor FieldTable._read_table to optimize scan checks and reduce unnecessary computations
Merge in PIPE/pipeline from PIPE-3004-refactoring-fieldtable._read_table to main
* commit '7f44fe5b8df0412da26d172ccf0a1797cc97efbb':
PIPE-3004: Minor updates to improve readability of scan determination logic
PIPE-3004: Refactor FieldTable._read_table to optimize scan checks and reduce unnecessary computations -
Rui Xue <rx.astro@gmail.com> 7f44fe5b8df0412da26d172ccf0a1797cc97efbb m
PIPE-3004: Minor updates to improve readability of scan determination logic
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Luke Maud f13422f29445a6e51af26d2b34aef050f72452f3 m
PIPE-2932 change fraction flag limit to 0.5 and logics to equal and greater than
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Rui Xue 30e1473dcb3773a1b02c07f4b222313243e30e1d m
PIPE-3004: Refactor FieldTable._read_table to optimize scan checks and reduce unnecessary computations
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Rui Xue <rx.astro@gmail.com> b9ab438464dd42f47c0b3456c7a24fca7a28bb32 m
PIPE-1677: Refactor logging statements in `ImageParamsHeuristics` and `ImageParamsHeuristicsVlassQl`
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Rui Xue <rx.astro@gmail.com> f036033eb1e92fd746c033492a0a59b5311c0130 m
PIPE-1677: Update `is_eph_obj` method in VLASS heuristics to include type hints and detailed docstrings
- pipeline/hif/heuristics/imageparams_base.py (version f036033eb1e92fd746c033492a0a59b5311c0130) (diffs)
- pipeline/hif/heuristics/imageparams_vlass_quick_look.py (version f036033eb1e92fd746c033492a0a59b5311c0130) (diffs)
- pipeline/hif/heuristics/imageparams_vlass_single_epoch_continuum.py (version f036033eb1e92fd746c033492a0a59b5311c0130) (diffs)
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Shawn Booth 7e7c567325cfb66a6ec4fbef286b7e35453bd9d4 m
Pull request #1759: PIPE-2999: auto-cleanup of testing directory from almaimportdata_test.py
Merge in PIPE/pipeline from PIPE-2999-auto-cleanup-of-testing-directory-from-almaimportdata_test.py to main
* commit 'fe959666c96e7b94bd4e02784ba0eebbcdae8aad':
PIPE-2999: added fixture to prevent leftover directory after running recipe_converter_test.py
PIPE-2999: use pytest's tmp_path fixture to clean up temp directories -
Shawn Booth 571d3827104cc21a36f6d92209f12f04f557fd5b m
Pull request #1761: PIPE-2503: add small b2b / polcal tests in the regression test collections
Merge in PIPE/pipeline from PIPE-2503-add-small-b2b-polcal-tests-in-the-regression-test-collections to main
* commit '0b8a3cd5a9b16714a4faa3caf0d82e861a7ca4c3':
PIPE-2503: turned back on polcal and B2B regression tests; updated polcal test to use different dataset -
Shawn Booth fe959666c96e7b94bd4e02784ba0eebbcdae8aad m
PIPE-2999: added fixture to prevent leftover directory after running recipe_converter_test.py
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Shawn Booth 8791506dff62feb3a95804c61117920eb1cd20e4 m
Pull request #1760: PIPE-1654: Add weblog rendering failure detection to regression tests
Merge in PIPE/pipeline from PIPE-1654-detect-weblog-rendering-failures-in-regression-tester to main
* commit '15b8691d7f4c9da10b6b7f69347c99aa17035891':
PIPE-1654: moved SIMULATE_WEBLOG_FAILURE logic into conftest.py to isolate from production code
PIPE-1654: add weblog rendering failure detection to regression tests -
Shawn Booth 15b8691d7f4c9da10b6b7f69347c99aa17035891 m
PIPE-1654: moved SIMULATE_WEBLOG_FAILURE logic into conftest.py to isolate from production code
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Shawn Booth 0b8a3cd5a9b16714a4faa3caf0d82e861a7ca4c3 m
PIPE-2503: turned back on polcal and B2B regression tests; updated polcal test to use different dataset
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Shawn Booth 5ebece4eb9d0f7def69a3b6e27affdab83531d03 m
PIPE-1654: add weblog rendering failure detection to regression tests
- pipeline/infrastructure/renderer/htmlrenderer.py (version 5ebece4eb9d0f7def69a3b6e27affdab83531d03) (diffs)
- pipeline/infrastructure/renderer/regression.py (version 5ebece4eb9d0f7def69a3b6e27affdab83531d03) (diffs)
- tests/test_pipeline_testing_framework.py (version 5ebece4eb9d0f7def69a3b6e27affdab83531d03) (diffs)
- tests/testing_utils.py (version 5ebece4eb9d0f7def69a3b6e27affdab83531d03) (diffs)
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Shawn Booth 885fa1cdc0039f090613a54079da47be2c63ed2a m
PIPE-2999: use pytest's tmp_path fixture to clean up temp directories
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Rui Xue <rx.astro@gmail.com> 5494b0144b4c425948f8e46843df37d645bd2e0b m
Merge remote-tracking branch 'origin/main' into PIPE-1677-multiple-mses-in-vlass-imaging-pipeline
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Shawn Booth bb482b1f169f76d0610ff8b695fafc94f0b37405 m
PIPE-2666: fixed indentation issue in mako file
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Shawn Booth 834358c74f94f949040517d2af109971693c9df2 m
PIPE-2663: added explicit data format 'o' to mimic plot_date default
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Shawn Booth 1fb676fce43f05a304ce0ed08007bc57496710e3 m
PIPE-1836: improved numpy code per reviewer comments
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Rui Xue c7211e85b28f68948a0c35ff80068ba5d45ce051 m
PIPE-2901: Fix some minor typos with small codestyle updates
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Rui Xue ee58e080236d14cb7c8fa5d57e3258a3d3996131 m
Merge remote-tracking branch 'origin/main' into PIPE-2901-add-commentary-explanations-into-hifa-heursitics-snr-code
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Rui Xue 3ae1efb71ad2c049ba34a36d1eb35df736bb8e44 m
PIPE-1677: Remove the `spwsel_lsrk` specification workaround for multi-MS case.
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Rui Xue dcdf548b5f42fc8351e9e78174cd570642b7c6a7 m
PIPE-1667: Override `is_eph_obj` in `ImageParamsHeuristicsVlassQl` to disable ephemeris checks
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Rui Xue <rx.astro@gmail.com> ab6b70d7bc2c149393ce9a1d5c48c8cd42d14d78 m
PIPE-1677: Add multi-MS support for the VLASS imaging pipeline in `hif_editimlist`, `hif_makeimages`/`hif_tclean`, and imaging heuristics classes.
- pipeline/hif/heuristics/imageparams_base.py (version ab6b70d7bc2c149393ce9a1d5c48c8cd42d14d78) (diffs)
- pipeline/hif/heuristics/imageparams_vlass_single_epoch_continuum.py (version ab6b70d7bc2c149393ce9a1d5c48c8cd42d14d78) (diffs)
- pipeline/hif/tasks/editimlist/editimlist.py (version ab6b70d7bc2c149393ce9a1d5c48c8cd42d14d78) (diffs)
- pipeline/hif/tasks/tclean/cleanbase.py (version ab6b70d7bc2c149393ce9a1d5c48c8cd42d14d78) (diffs)
- pipeline/hif/templates/editimlist.mako (version ab6b70d7bc2c149393ce9a1d5c48c8cd42d14d78) (diffs)
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Rui Xue <rx.astro@gmail.com> a1df607cf1a41ace235a461cda5779329080ac57 m
PIPE-1677: Support multiple MSes in `Transformimagedata`
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Rui Xue <rx.astro@gmail.com> 6a9b8c9599307bf52c631444baa11451b6a08a7b m
PIPE-1677: Improve `vlass_selfcal.mako` for better multi-vis support
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Rui Xue <rx.astro@gmail.com> 07701b4ccf7c862826a04a83675824958e29040a m
PIPE-1677: Adjust `hifv_checkflag` summary rendering for better multi-vis support
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Rui Xue <rx.astro@gmail.com> b804f9eb3a0775e9b56c9e4698ead5330376e6b3 m
PIPE-1677: Refactor `hifv_statwt` rendering to support multiple MSes for VLASS
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Rui Xue <rx.astro@gmail.com> 20e1130e0d7104ef9faff523019a70ba7e964fc7 m
PIPE-1677: Convert `hifv_exportvlassdata` to a "multi-vis" task and add support for archiving multiple self-calibration tables and flag versions
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Shawn Booth 7e82a0aef849ef495d98f86d3655f375d80f859c m
PIPE-1836: removed more deprecated newshape keyword arguments
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Shawn Booth 70b88353a5e1679e051d0b7d86456bb00b792907 m
PIPE-1836: remove deprecated newshape keyword argument in np.reshape; added filter argument to tar.extractall calls
- pipeline/h/tasks/importdata/importdata.py (version 70b88353a5e1679e051d0b7d86456bb00b792907) (diffs)
- pipeline/h/tasks/restoredata/restoredata.py (version 70b88353a5e1679e051d0b7d86456bb00b792907) (diffs)
- pipeline/hif/tasks/selfcal/selfcal.py (version 70b88353a5e1679e051d0b7d86456bb00b792907) (diffs)
- pipeline/hif/tasks/uvcontsub/uvcontsub.py (version 70b88353a5e1679e051d0b7d86456bb00b792907) (diffs)
- pipeline/hifv/tasks/restoredata/vlarestoredata.py (version 70b88353a5e1679e051d0b7d86456bb00b792907) (diffs)
- pipeline/hifv/tasks/restorepims/restorepims.py (version 70b88353a5e1679e051d0b7d86456bb00b792907) (diffs)
- pipeline/hifv/tasks/syspower/display.py (version 70b88353a5e1679e051d0b7d86456bb00b792907) (diffs)
- pipeline/hifv/tasks/syspower/syspower.py (version 70b88353a5e1679e051d0b7d86456bb00b792907) (diffs)
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Shawn Booth 46741bfe0a5d7b397eb1c390d581ae101123f441 m
PIPE-2665: fixed additional array-to-scalar deprecation warnings; switched deprecated fig.set_constrained_layout_pads call in favor of fig.get_layout_engine().set
- pipeline/domain/source.py (version 46741bfe0a5d7b397eb1c390d581ae101123f441) (diffs)
- pipeline/h/tasks/common/displays/image.py (version 46741bfe0a5d7b397eb1c390d581ae101123f441) (diffs)
- pipeline/h/tasks/exportdata/aqua.py (version 46741bfe0a5d7b397eb1c390d581ae101123f441) (diffs)
- pipeline/hsd/tasks/importdata/reader.py (version 46741bfe0a5d7b397eb1c390d581ae101123f441) (diffs)
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Shawn Booth 6e2e86004dddc5785713cbe69387b9ba4dca5f4d m
PIPE-1836: fixed numpy rename leading to import error
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Shawn Booth cfc9a7d58ecdfdcea9de0e67f0c1a95386e4a6c2 m
PIPE-2984: fixed pyparsing deprecation warnings in conversion.py
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Shawn Booth 5b523c068a8434822f9ef9a0e7c9d8182f7ef200 m
PIPE-1836: changed deprecated interpolation parameter in numpy.percentile to use method name instead
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Shawn Booth f7bdc201b717abee65e4e75082c3a01130dc7d9d m
PIPE-2666: replace use of deprecated matplotlib.pyplot.cm.get_cmap
- pipeline/hif/tasks/makecutoutimages/display.py (version f7bdc201b717abee65e4e75082c3a01130dc7d9d) (diffs)
- pipeline/hif/templates/vlasscube_makecutoutimages.mako (version f7bdc201b717abee65e4e75082c3a01130dc7d9d) (diffs)
- pipeline/hif/templates/vlasscube_makermsimages.mako (version f7bdc201b717abee65e4e75082c3a01130dc7d9d) (diffs)
- pipeline/hifv/tasks/analyzestokescubes/display.py (version f7bdc201b717abee65e4e75082c3a01130dc7d9d) (diffs)
- pipeline/hifv/tasks/statwt/renderer.py (version f7bdc201b717abee65e4e75082c3a01130dc7d9d) (diffs)
- pipeline/hifv/templates/analyzestokescubes.mako (version f7bdc201b717abee65e4e75082c3a01130dc7d9d) (diffs)
- pipeline/hsd/tasks/k2jycal/display.py (version f7bdc201b717abee65e4e75082c3a01130dc7d9d) (diffs)
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Shawn Booth a87d1695c4e58f64cd8f979f26f7cbed7f7b079c m
PIPE-2665: fixed numpy scalar conversion warnings when converting an array to a scalar
- pipeline/hif/heuristics/cleanbox.py (version a87d1695c4e58f64cd8f979f26f7cbed7f7b079c) (diffs)
- pipeline/hif/heuristics/imageparams_base.py (version a87d1695c4e58f64cd8f979f26f7cbed7f7b079c) (diffs)
- pipeline/hif/tasks/lowgainflag/lowgainflag.py (version a87d1695c4e58f64cd8f979f26f7cbed7f7b079c) (diffs)
- pipeline/hif/tasks/makeimlist/makeimlist.py (version a87d1695c4e58f64cd8f979f26f7cbed7f7b079c) (diffs)
- pipeline/hifa/tasks/imageprecheck/renderer.py (version a87d1695c4e58f64cd8f979f26f7cbed7f7b079c) (diffs)
- pipeline/hifv/tasks/fluxscale/renderer.py (version a87d1695c4e58f64cd8f979f26f7cbed7f7b079c) (diffs)
- pipeline/hsd/tasks/imaging/worker.py (version a87d1695c4e58f64cd8f979f26f7cbed7f7b079c) (diffs)
- pipeline/infrastructure/utils/math.py (version a87d1695c4e58f64cd8f979f26f7cbed7f7b079c) (diffs)
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Shawn Booth ad4478c622693b148a1d6ba8c0237ed5855af916 m
PIPE-2663: converted all deprecated calls to pyplot.plot_date to pyplot.plot
- pipeline/hifa/tasks/common/displays/phaseoffset.py (version ad4478c622693b148a1d6ba8c0237ed5855af916) (diffs)
- pipeline/hifv/tasks/syspower/display.py (version ad4478c622693b148a1d6ba8c0237ed5855af916) (diffs)
- pipeline/infrastructure/displays/plotpwv.py (version ad4478c622693b148a1d6ba8c0237ed5855af916) (diffs)
- pipeline/infrastructure/displays/plotsuntrack.py (version ad4478c622693b148a1d6ba8c0237ed5855af916) (diffs)
- pipeline/infrastructure/displays/plotweather.py (version ad4478c622693b148a1d6ba8c0237ed5855af916) (diffs)
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Luke Maud befc8db21581b8af56fb536b9e14ea389b592d94 m
PIPE-2901: updated gaincalSNR function in fluxscale/qa.py for compatability with snr.py calculations
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Luke Maud bc0325204ae9ea93a2ac6080a34aee1eae3d3a80 m
PIPE-2901: correct all parameters nbaselines to nEffectiveAntennas
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Luke Maud 70fd30191f7ff9c0e5ec49f9f341322f9c21b5bf m
PIPE-2901: edit to n-3 equation and rename nbaselines to nEffectiveAntennas
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Luke Maud db8113b013c49cca7dc6ae003ec37c05d2e79fba m
add PIPE-2901 explination and update hard coded ant numbers to fiducal variable