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Code commits
Pipeline
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Ajay Vibhute 122ab729e60d38421960aa64d9c4be9cada7c27c
PIPE-2952: skipping computing uvrange by passing uvrange='' to makeimlist
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Rui Xue 6895792b3fa831029cf13c829e69c16d4bcde586
Merge remote-tracking branch 'origin/main' into PIPE-2952-hif_uvcontsub-runs-for-an-extremely-long-time-during-restore
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Rui Xue 15bb0dc4b15b3cca2a4f9400a6f9c5fa959de9ae m
Pull request #1806: PIPE-2738: Update RTD setup
Merge in PIPE/pipeline from PIPE-2738-update-readthedocs-yaml to main
* commit 'f2cc52c1605ce1c02653e06d845bc3581eeaad47':
PIPE-2738: Update ReadTheDocs configuration to use Python 3.12 and Pixi for building documentation -
Rui Xue f2cc52c1605ce1c02653e06d845bc3581eeaad47 m
PIPE-2738: Update ReadTheDocs configuration to use Python 3.12 and Pixi for building documentation
Co-authored-by: Copilot <copilot@github.com> -
Rui Xue 57e37988e5efa6c75a1e874b66154a64bf0fb28c m
Pull request #1805: PIPE-3077: doc update on regression test, pixi tasks
Merge in PIPE/pipeline from PIPE-3077-isolate-individual-regression-tests-from-casa-stateful-behavior to main
* commit '72a633b55efcf3af84583b240744337865ac7a6b':
PIPE-3077: Remove deprecated environment configuration files for pipeline and pipeline-vlass2026
PIPE-3077: `pyproject.toml` improve comments and move pandoc to docs env
PIPE-3077: Refactor Pixi task documentation for clarity and consistency
PIPE-3077: Update documentation and configuration for running tests with pixi and pytest -
Rui Xue 72a633b55efcf3af84583b240744337865ac7a6b m
PIPE-3077: Remove deprecated environment configuration files for pipeline and pipeline-vlass2026
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Rui Xue 3222b0ed762be0d3baea6bcb0bece7e0235c76ec m
PIPE-3077: `pyproject.toml` improve comments and move pandoc to docs env
- Add inline rationale comments: poppler/imagemagick (Pipeline),
protobuf pin (casaplotms), openmpi-mpicxx (C++ MPI bindings),
nodefaults (not needed in pixi), casa674 indirect deps
- Move pandoc to [tool.pixi.feature.docs] — only needed for doc builds
- Add --junitxml=regression-results.xml to test-regression task
Co-authored-by: Copilot <copilot@github.com> -
Rui Xue 578d072259b387f9969b6121b5cbf12c630a3725 m
PIPE-3077: Refactor Pixi task documentation for clarity and consistency
Co-authored-by: Copilot <copilot@github.com> -
Rui Xue de8bdaccb6bbf11018c8bce17185ae3a6fcccd72 m
PIPE-3077: Update documentation and configuration for running tests with pixi and pytest
Co-authored-by: Copilot <copilot@github.com> -
Takeshi Nakazato 60a4c0de699922601dcb4adecc5377495d6b9989 m
Pull request #1762: PIPE-2945 hsd_skycal should not crash if it failed to generate sky caltable for only one
Merge in PIPE/pipeline from PIPE-2945-hsd_skycal-sdpl-should-not-crash-if-it-failed-to-generate-sky-caltable-for-only-one to main
* commit '16ce874a58991b45f3955a2b0924440c2e5becae':
Skip generating elevation plot if the data is empty
Bug fix on removing extra files created by plotbandpass
Fix wrong scan number issue in amp vs freq summary plot
Skip computing elevation difference when no valid skycal solution exists
Improvement of warning message
refactoring
Remove obsolete debug log
Simply the implementation
Remove unused class
Refactoring
Fix typo
Error accurate error handling
PIPE-2945 consolidate per-fields sdcal calls into just a single call -
Rui Xue b49d03f06a1a212024a52fada5fa3e60699a3099 m
Pull request #1767: PIPE-2947: Implement NaN handling for `savgol_filter` and update requirements to unpin scipy version
Merge in PIPE/pipeline from PIPE-2947-update-heuristics to main
* commit '0c9b827f1b746ffb8167e59bff1ef6824776157f':
PIPE-2947: Implement NaN handling for `savgol_filter` and update requirements to unpin scipy version -
Rui Xue 0c9b827f1b746ffb8167e59bff1ef6824776157f m
Merge remote-tracking branch 'origin/main' into PIPE-2947-update-heuristics
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Shawn Booth 5d62817fa7d0d41f848349fcf5ca3d7e2962cc02 m
Pull request #1736: PIPE-1787: Integrating Regression Test Documentation into RTD Source Code
Merge in PIPE/pipeline from integrate-docs-to-source-code to main
* commit 'e72af9e9f6dc3cdcab1f3251c0b9ae662207d915':
PIPE-1787: move table of contents to top of page
PIPE-1787: integrated regression testing instructions from confluence; updated to include information on component and unit tests -
Shawn Booth e72af9e9f6dc3cdcab1f3251c0b9ae662207d915 m
Merge remote-tracking branch 'origin/main' into integrate-docs-to-source-code
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Takeshi Nakazato 16ce874a58991b45f3955a2b0924440c2e5becae m
Merge branch 'main' into PIPE-2945-hsd_skycal-sdpl-should-not-crash-if-it-failed-to-generate-sky-caltable-for-only-one
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Takeshi Nakazato 19019e59b38674e3f5a2dcef53abe374862910b4 m
Pull request #1794: PIPE-3001 hsd baseline proper use of virtual real spw id in baseline worker.py
Merge in PIPE/pipeline from PIPE-3001-hsd_baseline-proper-use-of-virtual-real-spw-id-in-baseline-worker.py to main
* commit '72b7331ba1f531a7577dcc2efdfaaeae0dd9dfd7':
harmless change to trigger Bamboo build
Replace string format method with f-string
Update spw-related variable names to indicate they store real spw id
Replace "EB" with more generic word, "MS"
rename spw-related variables to distinguish virtual or real
Fix inconsistent order of the args
Add docstrings to some methods
Update parameter name accordingly
gather fitting configuration log per EB (per worker process)
bug fix on the use of local _wave_number
Remove extra comma
Clearly separate the use of real/virtual spw ids -
Takeshi Nakazato 20c1fde25f0a690cb78314659b1e9a8ed2020392 m
Merge branch 'main' into PIPE-2945-hsd_skycal-sdpl-should-not-crash-if-it-failed-to-generate-sky-caltable-for-only-one
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Takeshi Nakazato 72b7331ba1f531a7577dcc2efdfaaeae0dd9dfd7 m
harmless change to trigger Bamboo build
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Takeshi Nakazato 78659804c692531c049fdd943848342283554f73 m
Merge branch 'main' into PIPE-3001-hsd_baseline-proper-use-of-virtual-real-spw-id-in-baseline-worker.py
Co-authored-by: Copilot <copilot@github.com> -
Ryan Loomis d94fb1cb5caf9e7a9169818bb224b1445ad8ba02 m
Pull request #1787: PIPE-2617: make hif_findcont use uvrange
Merge in PIPE/pipeline from PIPE-2617-make-hif_findcont-use-uvrange to main
* commit '803f8d791bb8a562a28f97f032ba7939e678f16d':
PIPE-2617: make hif_findcont use uvrange -
Shawn Booth a1e5544161d269358a369c16ed132a32904a2706 m
Pull request #1724: PIPE-2903 & PIPE-2939: Python Code Modernization, Import Optimization, and Cleanup
Merge in PIPE/pipeline from PIPE-2903-additional-refactoring-items-after-pr-1452 to main
* commit '83fe0c033e0abcb3a7237aa8768681ca58a63e1a':
PIPE-2903: reverted super reference calls to the parent object; changed type of QuantityDict value
PIPE-2903: fix failure introduced at merge
PIPE-2903: removed references to custom dictionaries in the all block that got reintroduced on merge with main
PIPE-2903: fixed docstring reference to the correct Jira ticket
PIPE-2903: removed defunct _cluster_details function replaced by deferred request
Replace naive datetimes with timezone-aware UTC datetimes throughout codebase
PIPE-2903: fixed timezone naive issues by adding UTC timezone
PIPE-2903: gathered all custom CASA type hints into single module casa_types
PIPE-2903: fixes to unit test failures associated with datetime changes from naive to UTC aware
PIPE-2903: converted callable type hint to Callable; removed commented out code and duplicated type hints from docstrings; updated numpy type hints
PIPE-2939: removed defunct pipeline/infrastructure/docutils module
PIPE-2903: updated type hints to use type MaskedArray instead of constructor; fixed inaccurate type hints in hsd/baselineflag; updated several NewType custom variables to use TypedDict; fixed several indentation levels; moved type-hint-only imports into TYPE_CHECKING; replaced Integral with Real for more accurate type hint
PIPE-2903: reverted changes to extern module; reverted several namespace imports that were incorrectly removed; reverted incorrectly moved imports to TYPE_CHECKING
PIPE-2903: moved more type-hint-only imports to TYPE_CHECKING; removed several unused imports; fixed several unbound/undefined variable errors; replaced deprecated imports with functionally-equivalent imports; fixed invalid type forms; added import of collections.abc library
PIPE-2903: moved more type-hint-only imports into TYPE_CHECKING; replaced typing module shims with direct module imports
PIPE-2903: removed deprecated datetime.utcnow function; migrated generic type hints to appropriate modules per PEP585; switched abstract base class usage per PEP 3119
PIPE-2903: moved many type-hint-only imports into TYPE_CHECKING; added future annotations and removed many string literals from type hints; updated many old style docstrings; removed object name from class definitions and super calls
PIPE-2903: updated type hinting standards per PEP484, PEP585, and PEP604, including replacing imports for built-ins and removing string literals and adding annotation forwarding -
Rui Xue 1fa18ea485c9483ae9961384aedc3e0d4ce45e92 m
Pull request #1790: PIPE-3061/PIPE-3027
Merge in PIPE/pipeline from PIPE-3061-examining-the-possible-memory-leak-when-running-multiple-regression-tests-on-one-pytest to main
* commit 'ebb6ced6fd1f23d977a302abef49c5d461feca85':
PIPE-3061: Update `pixi_tasks.md`
PIPE-3061: drop Python 3.10/3.11, add CASA 6.7.4 env, update docs theme
PIPE-3061: add pixi tasks for regression/unit tests and developer docs
PIPE-3061: Add `pytest-xvfb` to development requirements for headless testing support without `xvfb-run`
PIPE-3061: Update documentation to clarify xdist worker scaling and per-test timing details
PIPE-3061: Add MPI worker scaling recommendations and per-test timing details to documentation
PIPE-3061: Add usage examples for `@pytest.mark.mpi` in documentation
PIPE-3061: Further improve memory management by triggering garbage collection after clearing caches and releasing context in `PipelineTester`
PIPE-3027: Simplify MPI marker handling in pytest configuration and update description for clarity
PIPE-3027: add `@pytest.mark.mpi` marker and `--ignore-mpi-markers` option
PIPE-2061: Add fixture to clear module-level caches between tests to reduce memory footprint
PIPE-3061: Implement unsubscribe functionality in eventbus and improve the memory management for `Context` in `PipelineTester` -
Takeshi Nakazato 9b6f98a19b6ed94b5194f1179604ed21ea3afb3f m
Merge branch 'main' into PIPE-3001-hsd_baseline-proper-use-of-virtual-real-spw-id-in-baseline-worker.py
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Takeshi Nakazato 4ea0c6786241662b50f1467baab613b34249a4c4 m
Replace string format method with f-string
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Rui Xue ebb6ced6fd1f23d977a302abef49c5d461feca85 m
PIPE-3061: Update `pixi_tasks.md`
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Rui Xue d42126852c0284c766a041f46c36e47382b81001 m
PIPE-3061: drop Python 3.10/3.11, add CASA 6.7.4 env, update docs theme
- Bump requires-python to >=3.12; remove 3.10/3.11 classifiers
- Drop casa666-py310 and casa671-py310 pixi environments
- Add casa674-py312 feature/environment (CASA 6.7.4, Python 3.12)
- Enable casa675-py313 on osx-arm64; guard bdsf via sys_platform
marker in requirements.txt instead of platform list restriction
- Bump macos system-requirement to 15.0
- Simplify astropy pin: drop python_version conditional (3.10 gone)
- Add build-docs-fast (incremental) and build-pdf pixi tasks
- Add furo Sphinx theme to requirements_docs.txt and docs environment -
Rui Xue 87558d0b47039b0f84760dfe0c9eae09d184db12 m
PIPE-3061: add pixi tasks for regression/unit tests and developer docs
Add two pixi tasks to pyproject.toml:
- test-regression: runs tests/regression/fast/ with pytest-xdist
(worksteal, -m "not mpi") inside a plain Python session
- test-pltest1: runs a single small ALMA-IF regression test via `casashell`
Both tasks cd into PL_WORKDIR (default: ../working) before launching,
keeping CASA logs and pipeline output out of the source tree.
PL_WORKDIR is overridable at invocation time:
PL_WORKDIR=/zfs/scratch/myrun pixi run test-regression
Also add docs/source/develdocmd/pixi_tasks.md documenting all five
pixi tasks (test-unit, test-regression, test-pltest1,
fetch-casarundata, build-docs), the available CASA environments,
PL_WORKDIR usage, and per-environment invocation examples. -
Rui Xue 7a18fb44737e7411b666b4d547fec735bb9e78f6 m
PIPE-3061: Add `pytest-xvfb` to development requirements for headless testing support without `xvfb-run`
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Rui Xue 1a2b9adcaa74775f5ed57162127b9132773f2488 m
PIPE-3061: Update documentation to clarify xdist worker scaling and per-test timing details
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Rui Xue 2b588848a18322c774aaa1984949cd5c8105be68 m
PIPE-3061: Add MPI worker scaling recommendations and per-test timing details to documentation
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Takeshi Nakazato 7dc7aaff480337556994edd8ab262731bd661c6a m
Replace "EB" with more generic word, "MS"
-
Takeshi Nakazato 205fec595f43e475ddc7936b24ba264a37d177aa m
Update spw-related variable names to indicate they store real spw id
-
Takeshi Nakazato f82c92fe5d2109a066c88967333c9607f0c95336 m
rename spw-related variables to distinguish virtual or real
-
Takeshi Nakazato dd6b61aebe504d8ffb1da0dff71191162b693197 m
Fix inconsistent order of the args
-
Takeshi Nakazato b9c676fa2d8c0223de535bb0c619f743f5bce723 m
Add docstrings to some methods
-
Shawn Booth 83fe0c033e0abcb3a7237aa8768681ca58a63e1a m
PIPE-2903: reverted super reference calls to the parent object; changed type of QuantityDict value
-
Ajay Vibhute 066a71cca960d6dab310199d95f057b0d7c8d10c m
Pull request #1796: PIPE-3070: changing doquantiles to boolean from string
Merge in PIPE/pipeline from PIPE-3070-change-the-value-of-doquantiles-argument-value-from-string-to-boolean to main
* commit '3225e28bc9fb8dd7374a28f163c05ba463fbe6ba':
PIPE-3070: changing doquantiles to boolean from string -
Rui Xue a03d8c4a4d73e15e284dcdf7c14ab036edd35d73 m
PIPE-3061: Add usage examples for `@pytest.mark.mpi` in documentation
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Rui Xue 1fdf943c22c982a2fafa8be9827c6ac93cfbd1e0 m
Pull request #1789: PIPE-3060: Refactor masking logic in syspower to ensure proper boolean array handling
Merge in PIPE/pipeline from PIPE-3060-clone-typeerror-in-hifv_syspower to main
* commit '48578da916cdd083f98e572695bf6ed92de9d347':
PIPE-3060: Refactor masking logic in syspower to ensure proper boolean array handling -
Rui Xue 48182a99d008cbad907a23a6931d27675ea6fa18 m
Pull request #1792: PIPE-3063: add pipeline scripts/
Merge in PIPE/pipeline from PIPE-3063-add-scripts-for-standalone-helpers-cicd-functions to main
* commit 'b691966bbd3884dcb41b45ab29a60970f2c08337':
PIPE-3063: Update documentation in procedure_add_parallel.py to clarify task support for parallel execution
PIPE-3063: Add script to inject `parallel=True` into procedure/PPR for faster development testing -
Shawn Booth bd2d6c90ae315b302adb9ea120052a2f6efbf060 m
PIPE-2903: fix failure introduced at merge
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Shawn Booth 5b727dd9aa82adb227b08d2d4c66bd4fd036df02 m
Merge remote-tracking branch 'origin/main' into PIPE-2903-additional-refactoring-items-after-pr-1452
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Ajay Vibhute 3225e28bc9fb8dd7374a28f163c05ba463fbe6ba m
PIPE-3070: changing doquantiles to boolean from string
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Takeshi Nakazato b5bbd549effbe90924cd068cfc70edf869a3d2df m
Update parameter name accordingly
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Takeshi Nakazato 8a6139173ac337ed8a7838258a312045ace5627a m
gather fitting configuration log per EB (per worker process)
-
Takeshi Nakazato b6005bb326fa30689ea73cfc0eca7a0b8ca84550 m
bug fix on the use of local _wave_number
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Takeshi Nakazato 8e6c772470209dab9cef7efcb77090149a479d54 m
Remove extra comma
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Takeshi Nakazato a2f12afcd6e4c489117d3fd6e280782f56b96dbd m
Clearly separate the use of real/virtual spw ids
In baseline/worker.py most of the spw ids are *real*. Exception is dictionary keys in fit_order, fit_func, and wave_number. When processing these dictionaries, every keys are checked if they are virtual and converted to real spw ids if necessary. -
Takeshi Nakazato bb957e3eeada2f1133358c97fbaed230fdbc2369 m
Pull request #1774: PIPE-2774 hsd atmcor selected atmtype become worse in pl2025
Merge in PIPE/pipeline from PIPE-2774-hsd_atmcor-selected-atmtype-become-worse-in-pl2025 to main
* commit '6dbac1563e26e93c773bb3f9b6139dd58440b0d0':
Eliminate matplotlib.pyplot depencency
Eliminate pylab dependency
Simplify the code using numpy function
Eliminate unnecessary conditional block
Complete docstring and type annotation of smooth function
Examine separate atmowpheric features individually
Adjust smoothing box size
increase smoothing kernel size
Refactoring to reduce number of smoothing operation
bug fix on metricnorm and revised skychansel
Mitigate boundary effect of convolution
change default metric for selectModelParams to 'intsqdiff'
intsqdiff -
Rui Xue 60ddcac9ca40ee8314460cf1007d7d1310c59415 m
Pull request #1779: PIPE-3034: Fix AQUA report formatting error due to single-string `vis` specifications of `TargetDataSelection`
Merge in PIPE/pipeline from PIPE-3034-aqua-report-datas-selection-asdm-description-section-got-comma-splitted-string to main
* commit '9a44970a9ba0fa860d5209486a307e66f954920d':
PIPE-3034: Fix AQUA report formatting error due to single-string `vis` specifications of `TargetDataSelection` -
Rui Xue 1d2fb62039efa1638db27ef4674750eb42f4d55f m
Pull request #1777: PIPE-3025: Remove serial model write enforcement logic in tclean for 'mosaic' gridder
Merge in PIPE/pipeline from PIPE-3025-remove-the-serial-model-write-enforcement-logic-in-hif_selfcal to main
* commit 'eb7e76035f6b6ca3a7d9bb131dc988dc669d61d3':
PIPE-3025: Remove serial model write enforcement logic in tclean for 'mosaic' gridder -
Dirk Muders 77b65bba576542a5c2e63db2fbd0e346b73183ad m
Pull request #1778: PIPE-3018: Applied changes made in PIPE-3012 for the PL2025 release and changed the image library 'overwrite' parameter to 'overwrite_on_export' to clarify the meaning.
Merge in PIPE/pipeline from PIPE-3018_Missing_cubes_hifa_exportdata_output to main
* commit 'e26c8ead3642ecc1751599fff56925ac214f0b17':
PIPE-3018: Added doc string for add_item method to explain its behavior in detail.
PIPE-3018: Applied changes made in PIPE-3012 for the PL2025 release and changed the image library 'overwrite' parameter to 'overwrite_on_export' to clarify the meaning. -
Takeshi Nakazato 6dbac1563e26e93c773bb3f9b6139dd58440b0d0 m
Eliminate matplotlib.pyplot depencency
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Takeshi Nakazato f6934da6f8dfdba3997a01116a28b838c360f948 m
Eliminate pylab dependency
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Takeshi Nakazato 6605902ee53a01ba945f8bbcce8de86a0832c65a m
Simplify the code using numpy function
-
Dirk Muders e26c8ead3642ecc1751599fff56925ac214f0b17 m
PIPE-3018: Added doc string for add_item method to explain its behavior in detail.
-
Dirk Muders 993278cbb303ae10148f08146199e09e8d1d20ad m
Merge remote-tracking branch 'origin/main' into PIPE-3018_Missing_cubes_hifa_exportdata_output
-
Takeshi Nakazato cfbf937b7d2cc3b77ffa1d407f47a5303e2bcde4 m
Eliminate unnecessary conditional block
-
Takeshi Nakazato d906191ca22646b37e14c08e8263ea74e885fa1c m
Complete docstring and type annotation of smooth function
Also added safeguard code not to perform the smoothing operation unnecessarily. -
Takeshi Nakazato c2578a84746e49bf4c35a2698c96484bbc5d7a66 m
Merge branch 'main' into PIPE-2774-hsd_atmcor-selected-atmtype-become-worse-in-pl2025
-
Joshua Hoskins 75da060fa90f5525ab4ff38f6ec9e3c78812903c m
Pull request #1757: PIPE-2893 hsd baseline enable sinusoid option
Merge in PIPE/pipeline from PIPE-2893-hsd_baseline-enable-sinusoid-option to main
* commit 'a02fd8911995418b7e518da3232bd608c9c6f1b8': (26 commits)
Switching the order up in API call.
Remove a few unused imports and rearranged the import list to be better grouped and neat.
Addressing additional minor formatting suggestions.
More type-hint changes. List -> list, Dict -> dict
More type-hint changes.
Applied suggestion
Applied suggestion
More type-hint changes.
Add new test for wave_number and new sinusoid test to build_fitting_configuration() test.
Add default behavior in the build_fitting_configuration() function for when the fit_function is None.
Fixed _get_fir_param() function error or lack thereof and added new .is_sinusoid_fit()
Fixed _get_fir_param() function error or lack thereof and added new .is_sinusoid_fit()
Fixed _get_fir_param() function error or lack thereof and added new .is_sinusoid_fit()
Update type hint according to code review suggestion.
Update type hint according to code review suggestion.
fix issue with mapped memory in insgle fitfunction case.
Changes related to Takeshi's code review.
Refactor and change tests to match up with the current build_fitting_configuration() function.
Test changes to test file to find problem.
Test changes to test file to find problem.
... -
Rui Xue b691966bbd3884dcb41b45ab29a60970f2c08337 m
PIPE-3063: Update documentation in procedure_add_parallel.py to clarify task support for parallel execution
-
Rui Xue 759e9cea24c382968581f2db14b49dee6267bec1 m
PIPE-3063: Add script to inject `parallel=True` into procedure/PPR for faster development testing
-
Rui Xue eb7e76035f6b6ca3a7d9bb131dc988dc669d61d3 m
PIPE-3025: Remove serial model write enforcement logic in tclean for 'mosaic' gridder
-
Rui Xue d87a7d922af5cbaaa24e42f894012ceb3b9d604e m
PIPE-3061: Further improve memory management by triggering garbage collection after clearing caches and releasing context in `PipelineTester`
-
Rui Xue ad99e6939dd46f3b43e47d6d9dd061d0b5908cbb m
PIPE-3027: Simplify MPI marker handling in pytest configuration and update description for clarity
-
Rui Xue ce6a72e9f88b598c68279407e4d3d312d8d934f7 m
PIPE-3027: add `@pytest.mark.mpi` marker and `--ignore-mpi-markers` option
- Add `mpi` pytest marker to `pyproject.toml`
- Auto-skip `@pytest.mark.mpi` tests in pytest_collection_modifyitems
when `MPIEnvironment.is_mpi_enabled` is False
- Add `--ignore-mpi-markers` CLI flag to disable the auto-skip, allowing
mpi-marked tests to run in a serial session
- Apply `@pytest.mark.mpi` to tests that require an MPI-enabled CASA
session: two alma_if fast tests and one vla fast test- conftest.py (version ce6a72e9f88b598c68279407e4d3d312d8d934f7) (diffs)
- pyproject.toml (version ce6a72e9f88b598c68279407e4d3d312d8d934f7) (diffs)
- tests/regression/fast/alma_if_fast_test.py (version ce6a72e9f88b598c68279407e4d3d312d8d934f7) (diffs)
- tests/regression/fast/vla_fast_test.py (version ce6a72e9f88b598c68279407e4d3d312d8d934f7) (diffs)
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Takeshi Nakazato 07f517743b331eed2d069619296b09d85dec3a2a m
Pull request #1782: PIPE-3035 bug fix to support "infiles" in VDPTaskFactory
Merge in PIPE/pipeline from PIPE-3035-paralleltemplate-doesn-t-distribute-vis-dependent-parameter-values-properly to main
* commit '7b27c5c12798e6f956051aa65083203fede4d714':
PIPE-3035 bug fix to support "infiles" in VDPTaskFactory -
Shawn Booth fba4e6ac1de89b456eb656aa416f36e615747f67 m
PIPE-2903: removed references to custom dictionaries in the all block that got reintroduced on merge with main
-
Rui Xue 70972aee0d83b0a8be223cdeb50ddca4f96ff80e m
PIPE-2061: Add fixture to clear module-level caches between tests to reduce memory footprint
-
Rui Xue 9e388ec091c0724e3181ba14affd6d25131a6290 m
PIPE-3061: Implement unsubscribe functionality in eventbus and improve the memory management for `Context` in `PipelineTester`
- pipeline/infrastructure/eventbus/__init__.py (version 9e388ec091c0724e3181ba14affd6d25131a6290) (diffs)
- pipeline/infrastructure/eventbus/eventbus.py (version 9e388ec091c0724e3181ba14affd6d25131a6290) (diffs)
- pipeline/infrastructure/timetracker.py (version 9e388ec091c0724e3181ba14affd6d25131a6290) (diffs)
- tests/testing_utils.py (version 9e388ec091c0724e3181ba14affd6d25131a6290) (diffs)
-
Rui Xue 48578da916cdd083f98e572695bf6ed92de9d347 m
PIPE-3060: Refactor masking logic in syspower to ensure proper boolean array handling
-
Shawn Booth 3e3976b61f2b37a6824b68198f2d949e81a0ab55 m
Merge remote-tracking branch 'origin/main' into PIPE-2903-additional-refactoring-items-after-pr-1452
-
Takeshi Nakazato 7b27c5c12798e6f956051aa65083203fede4d714 m
Merge branch 'main' into PIPE-3035-paralleltemplate-doesn-t-distribute-vis-dependent-parameter-values-properly
-
Shawn Booth 4842d060901afcc09e61070a7f380c25346fa7f4 m
Merge remote-tracking branch 'origin/main' into PIPE-2903-additional-refactoring-items-after-pr-1452
-
Shawn Booth 5a7209aabbcb235cd271c44472bae21935d7e416 m
PIPE-2903: fixed docstring reference to the correct Jira ticket
-
Shawn Booth ec6af9d454324357ee474cb23a3b529368a9db8d m
Merge remote-tracking branch 'origin/main' into PIPE-2903-additional-refactoring-items-after-pr-1452
-
Takeshi Nakazato 567235a4cb8564e27783af5d48c14da69bb42195 m
PIPE-3035 bug fix to support "infiles" in VDPTaskFactory
There was a bug in ParallelTemplate that per-EB parameter was not distributed properly for SD tasks that takes "infiles" instead of "vis". This fix switches scope attribute depending on the name of tha parameter. -
Shawn Booth 9c33ba790f7f9a54dfb054d19c213341559f14f1 m
Merge remote-tracking branch 'origin/main' into PIPE-2903-additional-refactoring-items-after-pr-1452
-
Takeshi Nakazato 4b5feeae87f2ef5ebf044820d526bf65cc7157a7 m
Merge branch 'main' into PIPE-2945-hsd_skycal-sdpl-should-not-crash-if-it-failed-to-generate-sky-caltable-for-only-one
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Rui Xue 9a44970a9ba0fa860d5209486a307e66f954920d m
PIPE-3034: Fix AQUA report formatting error due to single-string `vis` specifications of `TargetDataSelection`
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ryanaloomis <ryan.a.loomis@gmail.com> 803f8d791bb8a562a28f97f032ba7939e678f16d m
PIPE-2617: make hif_findcont use uvrange
-
Dirk Muders 20cf895fc0ed76bdd1a7ba243718353b540d5eda m
PIPE-3018: Applied changes made in PIPE-3012 for the PL2025 release and changed the image library 'overwrite' parameter to 'overwrite_on_export' to clarify the meaning.
- pipeline/hif/tasks/makeimages/makeimages.py (version 20cf895fc0ed76bdd1a7ba243718353b540d5eda) (diffs)
- pipeline/hif/tasks/makeimages/resultobjects.py (version 20cf895fc0ed76bdd1a7ba243718353b540d5eda) (diffs)
- pipeline/hif/tasks/selfcal/selfcal.py (version 20cf895fc0ed76bdd1a7ba243718353b540d5eda) (diffs)
- pipeline/hif/tasks/tclean/cleanbase.py (version 20cf895fc0ed76bdd1a7ba243718353b540d5eda) (diffs)
- pipeline/hif/tasks/tclean/renderer.py (version 20cf895fc0ed76bdd1a7ba243718353b540d5eda) (diffs)
- pipeline/hif/tasks/tclean/resultobjects.py (version 20cf895fc0ed76bdd1a7ba243718353b540d5eda) (diffs)
- pipeline/hif/tasks/tclean/tclean.py (version 20cf895fc0ed76bdd1a7ba243718353b540d5eda) (diffs)
- pipeline/infrastructure/imagelibrary.py (version 20cf895fc0ed76bdd1a7ba243718353b540d5eda) (diffs)
-
Takeshi Nakazato 1c56a8aaaa26bc193a8fa718b5773dc9124f9652 m
Examine separate atmowpheric features individually
Previous impelentation combined all the detected atmospheric features
together to calculate metric values. This commit evaluates metric values
for each atmospheric feature individually and takes sum of them. -
Takeshi Nakazato 87641e4339e44075d04b7058bd4e3dbeca53d88d m
Adjust smoothing box size
Smoothing box size is extended to 0.016 * nchan (factor was 0.004
previously). Set upper limit depending on the width of the atmospheric
feature (nchatm * 0.2). -
Takeshi Nakazato 21b281a3aeb48fe17b03939e6932cd6c9e549c32 m
increase smoothing kernel size
-
Joshua Hoskins a02fd8911995418b7e518da3232bd608c9c6f1b8 m
Merge branch 'main' into PIPE-2893-hsd_baseline-enable-sinusoid-option
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Takeshi Nakazato a8f9f6ed98054530edd94b18d6aae009bc715538 m
Refactoring to reduce number of smoothing operation
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Takeshi Nakazato a9b49a4a86bcf203f35e2ec1b67676ac13ab1c83 m
bug fix on metricnorm and revised skychansel
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Takeshi Nakazato c94e640f8edeb03c5a90a6eb8c9229fcdf1ef106 m
Mitigate boundary effect of convolution
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Takeshi Nakazato c82c9db997ebb20a58204b5c35afa68ebc75c823 m
change default metric for selectModelParams to 'intsqdiff'
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Joshua Hoskins 3194ce03631b16ce48da5efba930d1803a3bdfdf m
Switching the order up in API call.
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Joshua Hoskins 6465560ec6763cfd690ef405d706a78ba3f3be9f m
Remove a few unused imports and rearranged the import list to be better grouped and neat.
- pipeline/hsd/heuristics/baselineparamconfig.py (version 6465560ec6763cfd690ef405d706a78ba3f3be9f) (diffs)
- pipeline/hsd/heuristics/fitorder.py (version 6465560ec6763cfd690ef405d706a78ba3f3be9f) (diffs)
- pipeline/hsd/tasks/baseline/baseline.py (version 6465560ec6763cfd690ef405d706a78ba3f3be9f) (diffs)
- pipeline/infrastructure/basetask.py (version 6465560ec6763cfd690ef405d706a78ba3f3be9f) (diffs)
-
Joshua Hoskins fa682e7c0002f255ea9faf1598b6fd71c955089f m
Addressing additional minor formatting suggestions.
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Joshua Hoskins 18b31e45e29ff1af4d0a1a5195236276cc00973e m
More type-hint changes. List -> list, Dict -> dict
- pipeline/hsd/heuristics/baselineparamconfig.py (version 18b31e45e29ff1af4d0a1a5195236276cc00973e) (diffs)
- pipeline/hsd/tasks/baseline/baseline.py (version 18b31e45e29ff1af4d0a1a5195236276cc00973e) (diffs)
- pipeline/hsd/tasks/baseline/worker.py (version 18b31e45e29ff1af4d0a1a5195236276cc00973e) (diffs)
-
Joshua Hoskins 253bcebeaa5f09b19b7a7636211d9463053d8ce9 m
Merge remote-tracking branch 'origin/PIPE-2893-hsd_baseline-enable-sinusoid-option' into PIPE-2893-hsd_baseline-enable-sinusoid-option
-
Joshua Hoskins 59b3cb0065a2521000a6587a43a69d23d09a14ff m
More type-hint changes.
-
Takeshi Nakazato 4e9f8d632e183e9ff43ff5f28f3bc70879f59b51 m
Applied suggestion
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Takeshi Nakazato 152328bc229719751b50b2bb10d76ece844414a3 m
Applied suggestion
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Joshua Hoskins e6a52b927f859d98fc02a368abf8b2b2dbc16749 m
More type-hint changes.
Casa6
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Kumar Golap 0673f3ad43b910fe023c96aea061c23f81f0fb38
Pull request #1047: It was not the precision of converting fromRecord or to Record but numpy print precision.
Merge in CASA/casa6 from CAS-13338 to master
* commit 'dfb7e5241859986be77d9b1c19a09c8e2e5c3747':
It was not the precision of converting fromRecord or to Record but numpy print precision. That I believe fixes the precision of phasecenter for parallel continuum -
Srikrishna Sekhar 50e2cf84c451f0970e69a3aaf15ddd26166eb3de
Pull request #1046: CAS-13818
Merge in CASA/casa6 from CAS-13818 to master
* commit 'b0973d16124b120e2baf377a91488649c0034986':
CAS-13818 : Skip failing deconvolve tests
CAS-13818 : Fix mask cache conflict on tclean restart
CAS-13818: Add test to check for full stokes mask
Added a skip to test_mtmfsimgval_startmodel_axesmismatch in test_task_deconvolve for MacOS due to Fatal Python error. The failure and solution are being investigated on CAS-14117
CAS-13818 : Disable test_imgval_startmodel_axesmismatch on MacOS
CAS-13818 : Fix for failing test
CAS-13818 : Fix for image.tt0 pb mask -
Ville Suoranta 1d8db3ef8539fcf1f25aac6429130548c3a6304c
Pull request #1045: CAS-14769
Merge in CASA/casa6 from CAS-14769 to master
* commit '85227bc5735154327b1a1394763b90f6bd60ac0a':
Update casacore reference
Revert "Point casacore to dev branch"
Remove redefition of PtrBlock in TransformMachines
Point casacore to dev branch -
Akeem Wells 96543550841e6adfc298ea4bf932d3a6befa0157
Pull request #1044: CAS-14768
Merge in CASA/casa6 from CAS-14768 to master
* commit '1011c5933ca639144a5ae3c253086f038da63442':
Update xmlrunner_to_junit to work with unittest-xml-reporting module -
Srikrishna Sekhar b0973d16124b120e2baf377a91488649c0034986
Merge remote-tracking branch 'origin/master' into CAS-13818
-
Kumar Golap dfb7e5241859986be77d9b1c19a09c8e2e5c3747
It was not the precision of converting fromRecord or to Record but numpy print precision. That I believe fixes the precision of phasecenter for parallel continuum
-
Ville Suoranta 85227bc5735154327b1a1394763b90f6bd60ac0a m
Update casacore reference
-
Ville Suoranta 5401a2510043db196722fda194d292eae1fbe0e4 m
Revert "Point casacore to dev branch"
This reverts commit cf53b61404c57a80cfcef14f4df9392985b57443. -
Akeem Wells 1011c5933ca639144a5ae3c253086f038da63442
Merge branch 'master' into CAS-14768
-
Ville Suoranta 76a61842ff2f6c1e457900680d14157c96c2e59e m
Remove redefition of PtrBlock in TransformMachines
-
Ville Suoranta cf53b61404c57a80cfcef14f4df9392985b57443 m
Point casacore to dev branch
-
Akeem Wells 624b1aca4d9570ee193ab3b18ddac0db9fc2bf37 m
Update xmlrunner_to_junit to work with unittest-xml-reporting module
-
Srikrishna Sekhar ca5cf74ea4826b7c981a5931f405467735b895bc m
CAS-13818 : Skip failing deconvolve tests
These two tests are skipped in master, but were not skipped here even
after a merge from master.- casatasks/tests/tasks/test_task_deconvolve.py (version ca5cf74ea4826b7c981a5931f405467735b895bc) (diffs)
- casatools/src/code/synthesis/ImagerObjects/SIImageStore.cc (version ca5cf74ea4826b7c981a5931f405467735b895bc) (diffs)
- casatools/src/code/synthesis/ImagerObjects/SIImageStoreMultiTerm.cc (version ca5cf74ea4826b7c981a5931f405467735b895bc) (diffs)
-
Srikrishna Sekhar b8764caa1a4106dddb60f554b01670367722607b m
Merge remote-tracking branch 'origin/master' into CAS-13818
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Srikrishna Sekhar 1dcf3787bf43a9bf7622907c35d8971ad01d7087 m
CAS-13818 : Fix mask cache conflict on tclean restart
As documented, the fix for the original issue triggered a mask cache
conflict on restart. In the end the fix turned out to be fairly simple -
check if the mask exists and is valid, and do not touch it if it is.
So in the first instance, when the mask does not exist, it will do the
right thing. And it will not try to do anything on the restart either.
It ended up being a simple inversion of the original logic, with
appropriate traps in place so it works for both the original bug and the
derived bug. -
Srikrishna Sekhar f12d89e8155d92b786530e0078ed983406ba2287 m
Merge remote-tracking branch 'origin/master' into CAS-13818
-
Srikrishna Sekhar e9c363510f36d63230e74a9075a06e65eb4ee6b2 m
CAS-13818: Add test to check for full stokes mask
Added a check within test_stokes_mtmfs_IQUV within test_task_tclean to test the
mask when using mtmfs + full Stokes. -
Akeem Wells 9fd98280248fddc92b692d14aab4b5fb9a5c6dd3 m
Added a skip to test_mtmfsimgval_startmodel_axesmismatch in test_task_deconvolve for MacOS due to Fatal Python error. The failure and solution are being investigated on CAS-14117
-
Srikrishna Sekhar 40c02d7f0905f0b1a5fe4160e14a37fef39b3154 m
CAS-13818 : Disable test_imgval_startmodel_axesmismatch on MacOS
Added a skip to test_imgval_startmodel_axesmismatch in test_task_deconvolve for
MacOS. This test fails for unknown reasons, unrelated to the code on this
branch.
The failure and solution are being investigated on CAS-14117 and will be
re-enabled on that ticket. -
Srikrishna Sekhar 1095b56a0e0b446e4733b3a0afa1a5a7d8b1b123 m
CAS-13818 : Fix for failing test
The previous commit fixed the issue from the parent ticket (no mask for
multi-stokes MT-MFS images) in the wrong location, causing a single tclean test
to fail. This commit moves the fix to the right spot, i.e., into
SDAlgorithMSMFS::restore which works.
All the tclean + deconvolve tests now pass locally. -
Srikrishna Sekhar 24294615507801e5a512818b85aa9956a9a1518e m
CAS-13818 : Fix for image.tt0 pb mask
Fixed the issue, the full Stokes MT-MFS restored images now have the PB mask
included correctly. This has been tested with the script provided to reproduce
the original issue.