Joseph Masters 19 Mar 2021 3d2cde5f9212e62b225fd5c73d06e9d1ec6b127c

Merge pull request #550 in PIPE/pipeline from bugfix/PIPE-1082-fix-visibility-to-session-mapping-in-executeppr to release/2020.1.0
* commit '6e3b6a79bc11be02c8aa9a0699c6947a8b78d942':
  Revert "PIPE-1082: fix a fatal error of hsd_restoredata"
  PIPE-1082: fix a fatal error of hsd_restoredata
  PIPE-1082: streamline the sanitization function a bit more
  PIPE-1082: fix bug that improperly removes chars from SDM endings

Kana Sugimoto 18 Mar 2021 6e3b6a79bc11be02c8aa9a0699c6947a8b78d942

Revert "PIPE-1082: fix a fatal error of hsd_restoredata"
This reverts commit 56d55e90c9f91064d2450f3092976fdc6a599f1d.

• pipeline/infrastructure/executeppr.py (version 6e3b6a79bc11be02c8aa9a0699c6947a8b78d942) (diffs)

Kana Sugimoto 17 Mar 2021 56d55e90c9f91064d2450f3092976fdc6a599f1d

PIPE-1082: fix a fatal error of hsd_restoredata

• pipeline/infrastructure/executeppr.py (version 56d55e90c9f91064d2450f3092976fdc6a599f1d) (diffs)

Joseph Masters 17 Mar 2021 cd8d0e1ec378e3a00fac041ad0a59d07376c1814

PIPE-1082: streamline the sanitization function a bit more

• pipeline/infrastructure/executeppr.py (version cd8d0e1ec378e3a00fac041ad0a59d07376c1814) (diffs)

Joseph Masters 17 Mar 2021 83f2f242becb7c645b7f278580a9b5634c225aa2

PIPE-1082: fix bug that improperly removes chars from SDM endings
This adds more robust sanitization to
allow MSs ending in '.ms' or '_target.ms' while doing no harm to
other visibility file names.

An accompanying executeppr_test.py file is included to check this
new method.

• pipeline/infrastructure/executeppr.py (version 83f2f242becb7c645b7f278580a9b5634c225aa2) (diffs)
• pipeline/infrastructure/executeppr_test.py (version 83f2f242becb7c645b7f278580a9b5634c225aa2) (diffs)

Ville Suoranta 18 Mar 2021 b0ccb52b0daf324ca2664c6f86e81d4b53cd4b09

Merge pull request #356 in CASA/casa6 from CAS-13403 to master
* commit 'a6e7fe9bfe9994bdc328e7e3134590caad2bc04b':
  Update plotms master wheel
  Advance plotms wheel version
  Adjust test_plotms skycal plot size
  Treat skycal table as pure antenna-based in plotms

Pam Harris <pharris@nrao.edu> 17 Mar 2021 a6e7fe9bfe9994bdc328e7e3134590caad2bc04b

Update plotms master wheel

• build.conf (version a6e7fe9bfe9994bdc328e7e3134590caad2bc04b) (diffs)

Ville Suoranta 17 Mar 2021 04fb0d01dbf1a796962481c23186996e968a25b7

Merge pull request #353 in CASA/casa6 from CAS-13377 to master
* commit 'ccb94b33a04fd110ae2dda89fa801e04d11e1e3c':
  added linearmosic tool. CAS-13377

Sandra Castro 17 Mar 2021 f61d3c420d560c11457a7d777fce53ba36ca7da9

Merge pull request #354 in CASA/casa6 from CAS-13397 to master
* commit 'b1ee7220046d04ae6216e083b90f9b26c6f07387':
  add test in CASA6
  make test CASA5/6 compatible, CAS-13397
  Fixed a few testOptions in the json file. Added mpi to test_mstransform_mms.
  swap when-equals False/True values to prevent misbehavior of default(), CAS-13397
  add again explicit when/defaults for createmms sub and pseudo-subparameters, CAS-13397

Ville Suoranta 16 Mar 2021 6fcdb459febc7d650e6715916b9cd982a4c76d9f

Merge pull request #348 in CASA/casa6 from CAS-9912 to master
* commit '88cb6572ec4b779db4d1004922f03bbf143410cb':
  Added doc strings for each test case. Some light reformatting.
  Update Data Path. Add in additional checks
  Adding test_plotbandpass to components mapping json.
  Add skips to extended tests. Skips to be removed in future
  Added skips, teardowns to test cases
  Added remaining tests to test_plotbandpass
  initial commit of test_plotbandpass

Bob Garwood 16 Mar 2021 ccb94b33a04fd110ae2dda89fa801e04d11e1e3c

Merge branch 'master' into CAS-13377

Sandra Castro 16 Mar 2021 c18443fb1d7c58bfc42f3181ab3c77ae727ed24c

Merge pull request #352 in CASA/casa6 from CAS-13086 to master
* commit '7174c9b9f6ef41caa46083ac3c755538cfbe21fb':
  removed test_e2e_simanalyze_m51_3sim_alma.py, original version of one of the new tests, no longer needed. Removed one accidentally added line for a regression. CAS-13086.
  Update casacore reference from master in CAS-13086
  updated casatools/casacore to what's used in current casa6 master
  Updated the datapath for test data in casatestdata. Added reference data for some tests. Minor updated to comments in test scripts
  CAS-13086: updated sim regressions to run successfully in 5.8 and 6.2
  updated test_regression_sim_components_and_skymodel.py with current 5.8 and 6.2 refstats, 6.2 are in use, 5.8 and past values in the comments
  Merge master
  First version test_regression_sim_components_and_skymodel regression script, which is a CASA6 version of the old ppdisk2_regression script
  Added assert to make test succeed or fail.
  First version of updated regression script
  Made the regression script compatible with the template for regressions. Removed the call to findTemplate and gave explicitly the names of the files needed for comparison in the script. Removed the dependency to testhelper and added a call to casatestutils. Remove the data in the tearDown method
  First updated version of simobserve+simanalyze regression script

Sandra Castro 15 Mar 2021 88cb6572ec4b779db4d1004922f03bbf143410cb

Merge branch 'master' into CAS-9912

Ville Suoranta 15 Mar 2021 85fb20d3ce0c4631f2e1ec72d17945b532c70c39

Merge pull request #351 in CASA/casa6 from CAS-13334 to master
* commit '5402da0a44402041405ada6b2682f9c1baa87b92':
  Forgot that old vi is still being tested in synthesisimager
  fix a type that got introduced in the negative frequency case
  Missed a compiler warning about a non return value
  Fixed a first partition swing underestimation due to hitting channel 0 and some cleanup of temp files that seems to remain sometimes
  fixed a couple of extra commenting
  Fix an issue when using multiple ms and perchanweightdensity=True... the imaging weight number of channels was not accounting for the retuning of spw in the second and subsequent ms

Federico Montesino Pouzols 15 Mar 2021 b1ee7220046d04ae6216e083b90f9b26c6f07387

Merge remote-tracking branch 'origin/master' into CAS-13397

Federico Montesino Pouzols 15 Mar 2021 0be19fdea8b109de10fbfd38cd7cfbc78608d48e

add test in CASA6

• casatasks/tests/tasks/test_mstransform_mms.py (version 0be19fdea8b109de10fbfd38cd7cfbc78608d48e) (diffs)

Federico Montesino Pouzols 15 Mar 2021 85be67f976d60c970042dcd2d811a8c289bf5bea

make test CASA5/6 compatible, CAS-13397

• casa5/gcwrap/python/scripts/tests/test_mstransform_mms.py (version 85be67f976d60c970042dcd2d811a8c289bf5bea) (diffs)

Sandra Castro 15 Mar 2021 0e4cf0ca6db0761e470168a228da5f49ecc8da9b

Fixed a few testOptions in the json file. Added mpi to test_mstransform_mms.

• casatestutils/casatestutils/component_to_test_map.json (version 0e4cf0ca6db0761e470168a228da5f49ecc8da9b) (diffs)

Kumar Golap 14 Mar 2021 5402da0a44402041405ada6b2682f9c1baa87b92

Forgot that old vi is still being tested in synthesisimager

• casa5/code/synthesis/ImagerObjects/SIMapperCollection.cc (version 5402da0a44402041405ada6b2682f9c1baa87b92) (diffs)

Kumar Golap 13 Mar 2021 3bb0937af510b5db886aaa015d4be5c5b791884f

Merge branch 'master' into CAS-13334

Pam Harris <pharris@nrao.edu> 12 Mar 2021 8fffb6c302bb0bb55fffa1439fb9334ec2933b02

Advance plotms wheel version

• build.conf (version 8fffb6c302bb0bb55fffa1439fb9334ec2933b02) (diffs)

Pam Harris <pharris@nrao.edu> 12 Mar 2021 c2ba53ac7ce07303d799b0990eecfbab80fee3f4

Adjust test_plotms skycal plot size

• casa5/gcwrap/python/scripts/tests/test_plotms.py (version c2ba53ac7ce07303d799b0990eecfbab80fee3f4) (diffs)

Bob Garwood 12 Mar 2021 7174c9b9f6ef41caa46083ac3c755538cfbe21fb

removed test_e2e_simanalyze_m51_3sim_alma.py, original version of one of the new tests, no longer needed. Removed one accidentally added line for a regression. CAS-13086.

• casatests/e2e/test_e2e_simanalyze_m51_3sim_alma.py (version 7174c9b9f6ef41caa46083ac3c755538cfbe21fb) (diffs)
• casatests/regression/test_regression_sim_components.py (version 7174c9b9f6ef41caa46083ac3c755538cfbe21fb) (diffs)

Pam Harris <pharris@nrao.edu> 12 Mar 2021 eda0785bcaaa66fbaf180166a65220d8f3a21ce2

Treat skycal table as pure antenna-based in plotms
When ANT1 column == ANT2 column

• build.conf (version eda0785bcaaa66fbaf180166a65220d8f3a21ce2) (diffs)
• casa5/code/synthesis/CalTables/CTInterface.cc (version eda0785bcaaa66fbaf180166a65220d8f3a21ce2) (diffs)
• casa5/gcwrap/python/scripts/tests/test_plotms.py (version eda0785bcaaa66fbaf180166a65220d8f3a21ce2) (diffs)

Sandra Castro 12 Mar 2021 2c7b2bd9ae788cdeac9db3fb622404e008af39d5

Merge pull request #343 in CASA/casa6 from CAS-13387 to master
* commit '6461ae65446dc16788e715551088154b0ed04234':
  Add Missing Import
  Add submodule datahelpers

Takeshi Nakazato 11 Mar 2021 9bf2557df1f733210c7f6cc143b27c2d033fdef2

Merge pull request #346 in CASA/casa6 from CAS-13360 to master
* commit 'bd94c94ca4091c7869aec3cc196735324fc42d12':
  Use the SPW and polID from the msiter to improve performance
  Cache the spw and pol for determineChannelSelection in the row loop under row blocking
  Read the spectral windows and polarizations before the loop on rows
  Rename test_eq->func_test_eq to avoid issues with pytest
  test_flagdata: Unflag test MS before running flagdata and check for total flagged rows
  Improve VisibilityIteratorImpl2 unit tests with row blocking
  Add test to flagdata that exercises an MS with decreasing number of rows in subsequent chunks
  Initialize the row numbers to allow the channel selection to work properly

Federico Montesino Pouzols 11 Mar 2021 c6477df7ddb91326b97f3427a3cea9e73fc2367a

swap when-equals False/True values to prevent misbehavior of default(), CAS-13397

• casa5/gcwrap/tasks/mstransform.xml (version c6477df7ddb91326b97f3427a3cea9e73fc2367a) (diffs)

Ville Suoranta 11 Mar 2021 bc18dfea2a8a08d5e653b30d011a7b63a0c82536

Merge pull request #347 in CASA/casa6 from CAS-13369 to master
* commit '665970a0a1a03f0deea878db422e7c7ac598d22a':
  Fix pb math in task_simalma (CAS-13369)
  Adding a new regression script based on the simalma casaguides from https://casaguides.nrao.edu/index.php?title=Simalma_(CASA_5.4). This regression will monitor that task simalma works properly for those use-cases described in the guides. The fits file used by the regression is added to the casatestdata repository.
  Add feather to XML deps for simalma (CAS-13369)
  Update deprecated image extension in task_simalma (CAS-13369)
  simanalyze cell parameter accepts non-strings (CAS-13369)
  vector element fix (CAS-13369)
  allow for specification of task dependencies in XML w/ <needs> (CAS-13369)

Bob Garwood 11 Mar 2021 9cc431c802afa4876a54cf487af3b14eb5977afb

Merge branch 'CAS-13086' of https://open-bitbucket.nrao.edu/scm/casa/casa6 into CAS-13086

Ville Suoranta 11 Mar 2021 71fea082b4c6c20dcae24eef2ce67c1eb541a6c5 m

Update casacore reference from master in CAS-13086

• casatools/casacore (version 71fea082b4c6c20dcae24eef2ce67c1eb541a6c5) (diffs)

Bob Garwood 11 Mar 2021 ea8d64276cfa598844b162006b8934f7e61bc278

updated casatools/casacore to what's used in current casa6 master

• casatools/casacore (version ea8d64276cfa598844b162006b8934f7e61bc278) (diffs)

Bob Garwood 11 Mar 2021 e0c90798c4c252b7ea342fc1236337951e2f9496

Merge branch 'master' into CAS-13086

Sandra Castro 11 Mar 2021 2c9ece732c9ae9e95fc712a834aec1eee79e4718 m

Updated the datapath for test data in casatestdata. Added reference data for some tests. Minor updated to comments in test scripts

• casatests/regression/test_regression_sim_TP.py (version 2c9ece732c9ae9e95fc712a834aec1eee79e4718) (diffs)
• casatests/regression/test_regression_sim_components.py (version 2c9ece732c9ae9e95fc712a834aec1eee79e4718) (diffs)
• casatests/regression/test_regression_sim_components_and_skymodel.py (version 2c9ece732c9ae9e95fc712a834aec1eee79e4718) (diffs)
• casatests/regression/test_regression_sim_cube.py (version 2c9ece732c9ae9e95fc712a834aec1eee79e4718) (diffs)
• casatests/regression/test_regression_sim_multi_arrays_and_TP.py (version 2c9ece732c9ae9e95fc712a834aec1eee79e4718) (diffs)

Sandra Castro 11 Mar 2021 dfaa899539477053c1c444b264c9979d8257c396 m

Merge branch 'CAS-13086' of https://open-bitbucket.nrao.edu/scm/casa/casa6 into CAS-13086

Sandra Castro 11 Mar 2021 6461ae65446dc16788e715551088154b0ed04234

Merge branch 'master' into CAS-13387

C. Enrique Garcia Dabo 11 Mar 2021 bd94c94ca4091c7869aec3cc196735324fc42d12

Merge branch 'master' into CAS-13360

Sandra Castro 11 Mar 2021 b6e882b8abbf860c8704afface57741a80689a84

Merge pull request #345 in CASA/casa6 from CAS-13398 to master
* commit '71d8c098968d4e4d9a1ebab471f7599275a5c189':
  Update plotms master wheel
  Update test_plotms for Mac, plotms wheel
  Set plotms branch wheel
  Add plotms test for cal axes
  Fix plotms cache for cal axis types

Bob Garwood 10 Mar 2021 3b8f647cbbb15bb44320b65428c0351d68631001 m

CAS-13086: updated sim regressions to run successfully in 5.8 and 6.2

• casa5/gcwrap/python/scripts/regressions/m51_tpsim_regression.py (version 3b8f647cbbb15bb44320b65428c0351d68631001) (diffs)
• casa5/gcwrap/python/scripts/regressions/ppdisk2_regression.py (version 3b8f647cbbb15bb44320b65428c0351d68631001) (diffs)
• casatests/regression/test_regression_sim_TP.py (version 3b8f647cbbb15bb44320b65428c0351d68631001) (diffs)
• casatests/regression/test_regression_sim_components.py (version 3b8f647cbbb15bb44320b65428c0351d68631001) (diffs)
• casatests/regression/test_regression_sim_components_and_skymodel.py (version 3b8f647cbbb15bb44320b65428c0351d68631001) (diffs)
• casatests/regression/test_regression_sim_cube.py (version 3b8f647cbbb15bb44320b65428c0351d68631001) (diffs)
• casatests/regression/test_regression_sim_multi_arrays_and_TP.py (version 3b8f647cbbb15bb44320b65428c0351d68631001) (diffs)

Andrew McNichols 10 Mar 2021 665970a0a1a03f0deea878db422e7c7ac598d22a

Merge branch 'master' of https://open-bitbucket.nrao.edu/scm/casa/casa6 into CAS-13369
Conflicts:
        casatools/ac/templates/setup.py.in
        casatools/readme.md
        casatools/scripts/gcw-pick
        casatools/scripts/xml-casa
The jar file had been incremented underneath these changes

Ville Suoranta 10 Mar 2021 367c54a0cf031082e9cc8cf71480d58e147fc9aa

Merge pull request #342 in CASA/casa6 from CAS-13395 to master
* commit '3be1c6524f8876c870ba3342332a876fb1991fd6':
  Fixed the issue described in CAS-13395...i.e building image coordinates with second or subsequent ms does not gum up the works for moving source,

Ville Suoranta 10 Mar 2021 91ecf40aa7ed8f9196bdd90a98668ad6680421ec

Merge pull request #344 in CASA/casa6 from hf-update-test-timeouts to master
* commit '6da9ca320dc1b601bd172a12520c68d8fbcf7450':
  Shorten test_stk_alma_pipeline_imaging timeout
  Increase timeouts

Pam Harris <pharris@nrao.edu> 10 Mar 2021 71d8c098968d4e4d9a1ebab471f7599275a5c189

Update plotms master wheel

• build.conf (version 71d8c098968d4e4d9a1ebab471f7599275a5c189) (diffs)

Sandra Castro 10 Mar 2021 3be751fb8d2de691d5fdd87c5de74bf800a42288

Added doc strings for each test case. Some light reformatting.

• casa5/gcwrap/python/scripts/tests/test_plotbandpass.py (version 3be751fb8d2de691d5fdd87c5de74bf800a42288) (diffs)
• casatasks/tests/tasks/test_plotbandpass.py (version 3be751fb8d2de691d5fdd87c5de74bf800a42288) (diffs)

Pam Harris <pharris@nrao.edu> 09 Mar 2021 4bcd4050383edc9f098a691beadacfac550bf929

Merge branch 'master' into CAS-13398

Akeem Wells 09 Mar 2021 068d7f1d84cb4d13e095cfe9a455c8a01d7c6387

Add Missing Import

• casa5/gcwrap/python/scripts/casatestutils/datahelpers/getTelescope.py (version 068d7f1d84cb4d13e095cfe9a455c8a01d7c6387) (diffs)
• casatestutils/casatestutils/datahelpers/getTelescope.py (version 068d7f1d84cb4d13e095cfe9a455c8a01d7c6387) (diffs)

Akeem Wells 09 Mar 2021 59c77efc430865abe29a2892aa22253ba856be49

Merge branch 'master' into CAS-9912

Akeem Wells 09 Mar 2021 0814e24ab844cf9223b7342b503179a64d88ad53 m

Update Data Path. Add in additional checks

• casa5/gcwrap/python/scripts/tests/test_plotbandpass.py (version 0814e24ab844cf9223b7342b503179a64d88ad53) (diffs)
• casatasks/tests/tasks/test_plotbandpass.py (version 0814e24ab844cf9223b7342b503179a64d88ad53) (diffs)

Ville Suoranta 09 Mar 2021 7229f1b3bcd4846bf91001200545cdaa6ae81c26

Merge pull request #341 in CASA/casa6 from CAS-13218 to master
* commit 'addeb67e92c593f19fe4b45b1b06b9182ad30d79':
  replace tabs with spaces (CAS-13218)
  added an important note about virtual column and ephermides sources

Pam Harris <pharris@nrao.edu> 08 Mar 2021 b2448fdb356333643193fbc4a51bfe5bf4891a6e

Update test_plotms for Mac, plotms wheel

• build.conf (version b2448fdb356333643193fbc4a51bfe5bf4891a6e) (diffs)
• casa5/gcwrap/python/scripts/tests/test_plotms.py (version b2448fdb356333643193fbc4a51bfe5bf4891a6e) (diffs)

Ville Suoranta 08 Mar 2021 dafe59116c2938c31e1d21c1e8b82cefdb9f66f7

Merge pull request #340 in CASA/casa6 from CAS-13340 to master
* commit 'ea52ffb17a392b120445b80ccd3b7d73e63bad50':
  Additional fix to modify_dict() so that modificcation of the task list happens only once per testcase
  Added the changes to casa5 side
  Fixed a bug in check_list_vals in imagetesthelpers and added test_dict modify function to remove the task commands not used in actual execution of the test due to the if-else block.

Sandra Castro 08 Mar 2021 10471b1149ac0e6235a486637c76cd01d5c7707f m

Adding test_plotbandpass to components mapping json.

• casatestutils/casatestutils/component_to_test_map.json (version 10471b1149ac0e6235a486637c76cd01d5c7707f) (diffs)

Federico Montesino Pouzols 07 Mar 2021 ee25f36c88f7834cedeaac98054b738a5fde4129

add again explicit when/defaults for createmms sub and pseudo-subparameters, CAS-13397

• casa5/gcwrap/tasks/mstransform.xml (version ee25f36c88f7834cedeaac98054b738a5fde4129) (diffs)

Pam Harris <pharris@nrao.edu> 05 Mar 2021 f84e6b58ba544381c903e44093af9ded34efd689

Set plotms branch wheel

• build.conf (version f84e6b58ba544381c903e44093af9ded34efd689) (diffs)

Pam Harris <pharris@nrao.edu> 05 Mar 2021 fd3406b3b4f14bde62a26400f9503a39404e576f

Add plotms test for cal axes

• casa5/gcwrap/python/scripts/tests/test_plotms.py (version fd3406b3b4f14bde62a26400f9503a39404e576f) (diffs)

Kumar Golap 05 Mar 2021 3be1c6524f8876c870ba3342332a876fb1991fd6

Fixed the issue described in CAS-13395...i.e building image coordinates with second or subsequent ms does not gum up the works for moving source,

• casa5/code/synthesis/ImagerObjects/SynthesisUtilMethods.cc (version 3be1c6524f8876c870ba3342332a876fb1991fd6) (diffs)
• casa5/code/synthesis/ImagerObjects/SynthesisUtilMethods.h (version 3be1c6524f8876c870ba3342332a876fb1991fd6) (diffs)

Pam Harris <pharris@nrao.edu> 05 Mar 2021 116479c2fccfce5b0719556148c31520fe3cc10a

Fix plotms cache for cal axis types

• casa5/code/plotms/Data/CalCache.cc (version 116479c2fccfce5b0719556148c31520fe3cc10a) (diffs)

C. Enrique Garcia Dabo 04 Mar 2021 6bae68763602119263e22edb98a066734d428b45

Merge branch 'master' into CAS-13360

Bob Garwood 04 Mar 2021 17955011580159430912b9130ecd555ba7c30b3d m

updated test_regression_sim_components_and_skymodel.py with current 5.8 and 6.2 refstats, 6.2 are in use, 5.8 and past values in the comments

• casatests/regression/test_regression_sim_components_and_skymodel.py (version 17955011580159430912b9130ecd555ba7c30b3d) (diffs)

Ville Suoranta 04 Mar 2021 01e7efd0ae778dbfc719a98701871aa8a3892705

Merge pull request #339 in CASA/casa6 from CAS-13195 to master
* commit 'e30a81584590fe1862e311fa785614ac6e088ab1': (25 commits)
  add comment to trigger one more build, CAS-13195
  restore original sequence of parameters, CAS-13195
  fix hidden sub-parameters of createmms, CAS-13195
  use subparam="true" and not "yes", CAS-13195
  fix subparam for CASA6 (CAS-13195)
  remove subparam descriptions and defaults conditional on subparam, breaks inp help, CAS-13195
  switch XML default for the function parameter of specsmooth from boxcar to hanning (CAS-13195)
  bungled the build.conf with master merge
  Trigger a build
  pick up casaviewer fixes (CAS-13195)
  almatasks gotask directory left out (CAS-13195)
  trigger new build (CAS-13195)
  increment almatasks version (CAS-13195)
  select specific almatasks version (CAS-13195)
  trigger new build (CAS-13195)
  trigger new build (CAS-13195)
  restore browsetable.xml (CAS-13195)
  trigger new build (CAS-13195)
  retrigger new build (CAS-13195)
  trigger new build (CAS-13195)
  ...

C. Enrique Garcia Dabo 04 Mar 2021 3c500fd71c88f9fc724253daa8e86cfb9569f104 m

Use the SPW and polID from the msiter to improve performance
Fixes partially CAS-13360

• casa5/code/msvis/MSVis/VisibilityIteratorImpl2.cc (version 3c500fd71c88f9fc724253daa8e86cfb9569f104) (diffs)

C. Enrique Garcia Dabo 04 Mar 2021 02c3f38e2c91492f12955b27396e0feb9cc4fc22 m

Cache the spw and pol for determineChannelSelection in the row loop under row blocking
Fixes partially CAS-13360

• casa5/code/msvis/MSVis/VisibilityIteratorImpl2.cc (version 02c3f38e2c91492f12955b27396e0feb9cc4fc22) (diffs)

C. Enrique Garcia Dabo 03 Mar 2021 10b3e3692a00b1a142344e0f63d6cded5cb36c00 m

Read the spectral windows and polarizations before the loop on rows
Fixes partially CAS-13360

• casa5/code/msvis/MSVis/VisibilityIteratorImpl2.cc (version 10b3e3692a00b1a142344e0f63d6cded5cb36c00) (diffs)

Darrell Schiebel <darrell@schiebel.us> 03 Mar 2021 addeb67e92c593f19fe4b45b1b06b9182ad30d79 m

replace tabs with spaces (CAS-13218)

• casa5/gcwrap/tasks/setjy.xml (version addeb67e92c593f19fe4b45b1b06b9182ad30d79) (diffs)

Darrell Schiebel <darrell@schiebel.us> 03 Mar 2021 e30a81584590fe1862e311fa785614ac6e088ab1

Merge branch 'master' into CAS-13195
Conflicts:
        build.conf

Ville Suoranta 03 Mar 2021 6f51524ff783e2f9b41b120c52913b17084b609f

Merge pull request #337 in CASA/casa6 from CAS-8335 to master
* commit 'c88ba856788a91d9245a974fdee7033299064878': (23 commits)
  Update plotms master wheel
  Fix caltable averaging test
  Advance plotms wheel
  Fix caltable averaging with spw selection, add tests
  Advance plotms branch wheel
  Fix merge errors
  Advance plotms branch wheel version
  Update plotms wheel
  Advance plotms branch version
  Make test consistent
  Fix tab
  sync test_plotms with casa6
  Set plotms branch wheel
  Remove unused variables
  Add tests for cal table averaging
  Use poln selection for caltable cache shape
  Fix baseline axis for caltable antenna averaging
  Add cal table antenna averaging
  Average frequencies with channel averaging
  Implement cal table channel averaging
  ...

Ville Suoranta 03 Mar 2021 a8c5ee2d42817f7438063094e1ceeb2673ba565b

Merge pull request #338 in CASA/casa6 from CAS-13389 to master
* commit 'f487b175536e482febe4e457017e425f30c5fa39':
  Renamed dataset used in test according to new name in casatestdata.

Akeem Wells 03 Mar 2021 4990bae40f2924eb967ff6b4f48362011904631f

Add submodule datahelpers

• casa5/gcwrap/python/scripts/casatestutils/CMakeLists.txt (version 4990bae40f2924eb967ff6b4f48362011904631f) (diffs)
• casa5/gcwrap/python/scripts/casatestutils/datahelpers/CMakeLists.txt (version 4990bae40f2924eb967ff6b4f48362011904631f) (diffs)
• casa5/gcwrap/python/scripts/casatestutils/datahelpers/__init__.py (version 4990bae40f2924eb967ff6b4f48362011904631f) (diffs)
• casa5/gcwrap/python/scripts/casatestutils/datahelpers/getTelescope.py (version 4990bae40f2924eb967ff6b4f48362011904631f) (diffs)
• casa5/gcwrap/python/scripts/casatestutils/datahelpers/selectTaql.py (version 4990bae40f2924eb967ff6b4f48362011904631f) (diffs)
• casatestutils/casatestutils/datahelpers/__init__.py (version 4990bae40f2924eb967ff6b4f48362011904631f) (diffs)
• casatestutils/casatestutils/datahelpers/getTelescope.py (version 4990bae40f2924eb967ff6b4f48362011904631f) (diffs)
• casatestutils/casatestutils/datahelpers/selectTaql.py (version 4990bae40f2924eb967ff6b4f48362011904631f) (diffs)

Bob Garwood 02 Mar 2021 42fde16f2f8625289b8a03299fbd6720497f48f5 m

Merge branch 'master' into CAS-13086

Andrew McNichols 02 Mar 2021 72d21ff7a17ff5fc843ee9209dcabe0c2b238c8c m

Fix pb math in task_simalma (CAS-13369)
The .image file produced by clean in 5.4 had primary beam correction applied. Since CAS-12502 and the change to using imtclean instead of imclean in simanalyze (called by simalma) the .image file is now sky-flat and does not need an extra scaling by the primary beam before it is feathered with the SD image.

Ensure the task_simalma code follows the algorithm:
* create SD image
* create IF flat-noise image
* regrid SD to IF
* output = feather(SD*IF.pb, IF(flat-noise) )/ IF.pb

• casa5/gcwrap/python/scripts/task_simalma.py (version 72d21ff7a17ff5fc843ee9209dcabe0c2b238c8c) (diffs)
• casatasks/src/tasks/task_simalma.py (version 72d21ff7a17ff5fc843ee9209dcabe0c2b238c8c) (diffs)

Pam Harris <pharris@nrao.edu> 02 Mar 2021 c88ba856788a91d9245a974fdee7033299064878 m

Update plotms master wheel

• build.conf (version c88ba856788a91d9245a974fdee7033299064878) (diffs)

Pam Harris <pharris@nrao.edu> 02 Mar 2021 7437c98fa9579d02266c77b2573c77ad384f57f5 m

Merge branch 'master' into CAS-8335

Sandra Castro 02 Mar 2021 f487b175536e482febe4e457017e425f30c5fa39 m

Renamed dataset used in test according to new name in casatestdata.

• casa5/gcwrap/python/scripts/tests/test_req_task_visstat.py (version f487b175536e482febe4e457017e425f30c5fa39) (diffs)
• casatasks/tests/tasks/test_req_task_visstat.py (version f487b175536e482febe4e457017e425f30c5fa39) (diffs)

Takahiro Tsutsumi 01 Mar 2021 ea52ffb17a392b120445b80ccd3b7d73e63bad50 m

Additional fix to modify_dict() so that modificcation of the task list happens only once per testcase

• casa5/gcwrap/python/scripts/tests/test_stk_alma_pipeline_imaging.py (version ea52ffb17a392b120445b80ccd3b7d73e63bad50) (diffs)
• casatests/stakeholder/test_stk_alma_pipeline_imaging.py (version ea52ffb17a392b120445b80ccd3b7d73e63bad50) (diffs)

C. Enrique Garcia Dabo 01 Mar 2021 8e932b7a24d4c72a18a33d929a5bfc310747aee0 m

Rename test_eq->func_test_eq to avoid issues with pytest
Explanation.
Fixes CAS-

• casa5/gcwrap/python/scripts/tests/test_flagdata.py (version 8e932b7a24d4c72a18a33d929a5bfc310747aee0) (diffs)
• casatasks/tests/tasks/test_flagdata.py (version 8e932b7a24d4c72a18a33d929a5bfc310747aee0) (diffs)

C. Enrique Garcia Dabo 01 Mar 2021 da18f84adf25cf9800023faa6c89d5d82dd812cb m

test_flagdata: Unflag test MS before running flagdata and check for total flagged rows
Fixes partially CAS-13360

• casa5/gcwrap/python/scripts/tests/test_flagdata.py (version da18f84adf25cf9800023faa6c89d5d82dd812cb) (diffs)
• casatasks/tests/tasks/test_flagdata.py (version da18f84adf25cf9800023faa6c89d5d82dd812cb) (diffs)

C. Enrique Garcia Dabo 01 Mar 2021 fdfa202da38d1fcc831c487ab64723708cf77caf m

Improve VisibilityIteratorImpl2 unit tests with row blocking
Fixes partially CAS-13360

• casa5/code/msvis/MSVis/test/MsFactory.cc (version fdfa202da38d1fcc831c487ab64723708cf77caf) (diffs)
• casa5/code/msvis/MSVis/test/MsFactory.h (version fdfa202da38d1fcc831c487ab64723708cf77caf) (diffs)
• casa5/code/msvis/MSVis/test/TestUtilsTVI.cc (version fdfa202da38d1fcc831c487ab64723708cf77caf) (diffs)
• casa5/code/msvis/MSVis/test/TestUtilsTVI.h (version fdfa202da38d1fcc831c487ab64723708cf77caf) (diffs)
• casa5/code/msvis/MSVis/test/tViiLayerFactory_GT.cc (version fdfa202da38d1fcc831c487ab64723708cf77caf) (diffs)

Pam Harris <pharris@nrao.edu> 26 Feb 2021 c8df82619c58cf82815f964c8500fe2dd8881c6d m

Merge branch 'master' into CAS-8335

Takahiro Tsutsumi 26 Feb 2021 eb1e0980b0900e306f3b419a249f4293d4c9d8ca m

Added the changes to casa5 side

• casa5/gcwrap/python/scripts/casatestutils/imagerhelpers/imagetesthelpers.py (version eb1e0980b0900e306f3b419a249f4293d4c9d8ca) (diffs)
• casa5/gcwrap/python/scripts/tests/test_stk_alma_pipeline_imaging.py (version eb1e0980b0900e306f3b419a249f4293d4c9d8ca) (diffs)

C. Enrique Garcia Dabo 26 Feb 2021 1af8ab55e37846d853d23e11735baa3f723456b4 m

Add test to flagdata that exercises an MS with decreasing number of rows in subsequent chunks
Fixes partially CAS-13360

• casa5/gcwrap/python/scripts/tests/test_flagdata.py (version 1af8ab55e37846d853d23e11735baa3f723456b4) (diffs)
• casatasks/tests/tasks/test_flagdata.py (version 1af8ab55e37846d853d23e11735baa3f723456b4) (diffs)

Pam Harris <pharris@nrao.edu> 26 Feb 2021 74af160cdbf6f7fb12ec52ac2c6be38ff27f3436 m

Fix caltable averaging test

• casa5/gcwrap/python/scripts/tests/test_plotms.py (version 74af160cdbf6f7fb12ec52ac2c6be38ff27f3436) (diffs)

Pam Harris <pharris@nrao.edu> 26 Feb 2021 2b2c9a74cb156a604c7dfad8df6824b75ef9d7f7 m

Advance plotms wheel

• build.conf (version 2b2c9a74cb156a604c7dfad8df6824b75ef9d7f7) (diffs)

Takahiro Tsutsumi 25 Feb 2021 b2d53923c50265c9395873cf61af29c51e701fd7 m

Fixed a bug in check_list_vals in imagetesthelpers and added test_dict modify function to remove the task commands not used in actual execution of the test due to the if-else block.

• casatests/stakeholder/test_stk_alma_pipeline_imaging.py (version b2d53923c50265c9395873cf61af29c51e701fd7) (diffs)
• casatestutils/casatestutils/imagerhelpers/imagetesthelpers.py (version b2d53923c50265c9395873cf61af29c51e701fd7) (diffs)

Bob Garwood 25 Feb 2021 9f10f451d9a75f4d126a34adba611c9035aa162b m

added linearmosic tool. CAS-13377

• casatools/scripts/gcw-pick (version 9f10f451d9a75f4d126a34adba611c9035aa162b) (diffs)

Kumar Golap 25 Feb 2021 773aa3fb205265f379f84dc3ce2c1d35087b815e m

fix a type that got introduced in the negative frequency case

• casa5/code/synthesis/TransformMachines2/BriggsCubeWeightor.cc (version 773aa3fb205265f379f84dc3ce2c1d35087b815e) (diffs)

Akeem Wells <awells@humite.local> 25 Feb 2021 32cb283a5301791bb3474a27ab57030fec45825b m

Merge branch 'master' into CAS-9912

Akeem Wells <awells@humite.local> 25 Feb 2021 002a70884dfd1d4f6c49d5da68ba2c279b88333e m

Add skips to extended tests. Skips to be removed in future

• casa5/gcwrap/python/scripts/tests/test_plotbandpass.py (version 002a70884dfd1d4f6c49d5da68ba2c279b88333e) (diffs)
• casatasks/tests/tasks/test_plotbandpass.py (version 002a70884dfd1d4f6c49d5da68ba2c279b88333e) (diffs)

Sandra Castro 25 Feb 2021 27a25138b5cfb78af1e439cbb06d66c8916fc0be m

Adding a new regression script based on the simalma casaguides from https://casaguides.nrao.edu/index.php?title=Simalma_(CASA_5.4). This regression will monitor that task simalma works properly for those use-cases described in the guides. The fits file used by the regression is added to the casatestdata repository.

• casatests/regression/test_regression_simalma_12m_ACA_combination.py (version 27a25138b5cfb78af1e439cbb06d66c8916fc0be) (diffs)

Pam Harris <pharris@nrao.edu> 24 Feb 2021 30426413b713a357a3a2cb3ec650e96a0e3e9306 m

Merge branch 'CAS-8335' of https://open-bitbucket.nrao.edu/scm/casa/casa6 into CAS-8335

Pam Harris <pharris@nrao.edu> 24 Feb 2021 af052a833381876137b2dad4ed838d1765227a3c m

Fix caltable averaging with spw selection, add tests

• build.conf (version af052a833381876137b2dad4ed838d1765227a3c) (diffs)
• casa5/code/plotms/Data/CalCache.cc (version af052a833381876137b2dad4ed838d1765227a3c) (diffs)
• casa5/gcwrap/python/scripts/tests/test_plotms.py (version af052a833381876137b2dad4ed838d1765227a3c) (diffs)

Andrew McNichols 24 Feb 2021 b93cf530c8c88740ffd1d851df7f228dde1a8543 m

Add feather to XML deps for simalma (CAS-13369)

• casa5/gcwrap/tasks/simalma.xml (version b93cf530c8c88740ffd1d851df7f228dde1a8543) (diffs)

Kumar Golap 24 Feb 2021 a0473db5c7ce124210b15a753a3d383b8b130aa0 m

Merge branch 'master' into CAS-13334

Kumar Golap 24 Feb 2021 349b21a392886cc84ec23c37dcbddd32bf8736ed m

Missed a compiler warning about a non return value

• casa5/code/synthesis/ImagerObjects/CubeMajorCycleAlgorithm.cc (version 349b21a392886cc84ec23c37dcbddd32bf8736ed) (diffs)
• casa5/code/synthesis/ImagerObjects/SynthesisImager.cc (version 349b21a392886cc84ec23c37dcbddd32bf8736ed) (diffs)

Kumar Golap 23 Feb 2021 4b8e4a194c65c42fe9684d4db3012f557d0d0956 m

Fixed a first partition swing underestimation due to hitting channel 0 and some cleanup of temp files that seems to remain sometimes

• casa5/code/synthesis/ImagerObjects/CubeMajorCycleAlgorithm.cc (version 4b8e4a194c65c42fe9684d4db3012f557d0d0956) (diffs)
• casa5/code/synthesis/ImagerObjects/SynthesisImager.cc (version 4b8e4a194c65c42fe9684d4db3012f557d0d0956) (diffs)
• casa5/code/synthesis/ImagerObjects/SynthesisImager.h (version 4b8e4a194c65c42fe9684d4db3012f557d0d0956) (diffs)
• casa5/code/synthesis/TransformMachines2/BriggsCubeWeightor.cc (version 4b8e4a194c65c42fe9684d4db3012f557d0d0956) (diffs)

Pam Harris <pharris@nrao.edu> 23 Feb 2021 94c37e6b29e33a2dbd151fa304a7fd779d9ec781 m

Advance plotms branch wheel

• build.conf (version 94c37e6b29e33a2dbd151fa304a7fd779d9ec781) (diffs)

Pam Harris <pharris@nrao.edu> 23 Feb 2021 a0bba67f0de535abbd2d5f9100231cde5dcea8e6 m

Fix merge errors

• casa5/code/plotms/Data/CalCache.cc (version a0bba67f0de535abbd2d5f9100231cde5dcea8e6) (diffs)
• casa5/code/plotms/Data/CalCache.h (version a0bba67f0de535abbd2d5f9100231cde5dcea8e6) (diffs)

Pam Harris <pharris@nrao.edu> 23 Feb 2021 e225a23a5886a13b0aec027b5fcc7590cc68b3e7 m

Merge branch 'master' into CAS-8335

Andrew McNichols 22 Feb 2021 47faf2308a6e7bce5830b5dc1ca3dd92995956ad m

Update deprecated image extension in task_simalma (CAS-13369)
CAS-12502 changed expected outputs of simanalyze due to simutil.imtclean call, so change expected pathname to ".pb" from ".flux.pbcoverage" which is no longer created.

• casa5/gcwrap/python/scripts/task_simalma.py (version 47faf2308a6e7bce5830b5dc1ca3dd92995956ad) (diffs)
• casatasks/src/tasks/task_simalma.py (version 47faf2308a6e7bce5830b5dc1ca3dd92995956ad) (diffs)

Darrell Schiebel <darrell@schiebel.us> 22 Feb 2021 cf725350c9fac1c93194269ead597220b5cd38e7 m

simanalyze cell parameter accepts non-strings (CAS-13369)

• casa5/gcwrap/tasks/simanalyze.xml (version cf725350c9fac1c93194269ead597220b5cd38e7) (diffs)

Ville Suoranta 22 Feb 2021 6da9ca320dc1b601bd172a12520c68d8fbcf7450 m

Shorten test_stk_alma_pipeline_imaging timeout

• casatestutils/casatestutils/component_to_test_map.json (version 6da9ca320dc1b601bd172a12520c68d8fbcf7450) (diffs)

Pam Harris <pharris@nrao.edu> 19 Feb 2021 781043449378a8966ae062e1adc6a3f2738a24e9 m

Merge branch 'master' into CAS-8335

Ville Suoranta 19 Feb 2021 a5bf212b100655e1a7836423e80b1ad575859892 m

Increase timeouts

• casatestutils/casatestutils/component_to_test_map.json (version a5bf212b100655e1a7836423e80b1ad575859892) (diffs)

Darrell Schiebel <darrell@schiebel.us> 19 Feb 2021 c95eecac99c538b6820bc2f4a159780c5885b700 m

vector element fix (CAS-13369)

• casa5/gcwrap/tasks/simalma.xml (version c95eecac99c538b6820bc2f4a159780c5885b700) (diffs)

Kumar Golap 18 Feb 2021 6e8d5dae08cd73650d179892ba70a1486ddd0823 m

added an important note about virtual column and ephermides sources

• casa5/gcwrap/tasks/setjy.xml (version 6e8d5dae08cd73650d179892ba70a1486ddd0823) (diffs)

Darrell Schiebel <darrell@schiebel.us> 18 Feb 2021 83c18f757d63a2a6a95c26975e2879ad387024e8 m

allow for specification of task dependencies in XML w/ <needs> (CAS-13369)

• casa5/gcwrap/tasks/simalma.xml (version 83c18f757d63a2a6a95c26975e2879ad387024e8) (diffs)
• casatools/ac/templates/setup.py.in (version 83c18f757d63a2a6a95c26975e2879ad387024e8) (diffs)
• casatools/readme.md (version 83c18f757d63a2a6a95c26975e2879ad387024e8) (diffs)
• casatools/scripts/gcw-pick (version 83c18f757d63a2a6a95c26975e2879ad387024e8) (diffs)
• casatools/scripts/xml-casa (version 83c18f757d63a2a6a95c26975e2879ad387024e8) (diffs)

Kumar Golap 17 Feb 2021 55821dba523823ee5696397834bda272bc0df363 m

fixed a couple of extra commenting

• casa5/code/synthesis/TransformMachines2/BriggsCubeWeightor.cc (version 55821dba523823ee5696397834bda272bc0df363) (diffs)