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Rui Xue 2 days ago 5dead9ae807422078ab5ba32dacd80165f625251

Pull request #1729: Update GitHub workflows and environment configuration to include unit tests for VLASS-PL2026.
Merge in PIPE/pipeline from unit-test-vlass2026 to main

* commit 'd9b21b61a46e2b5984530ce12c589bfcbf4805cd':
  PIPE-2940: Improve test data checkout by adding a directory existence check before cloning the repository
  PIPE-2940: Add Pixi environment definitions for the PL2026 development
  PIPE-2940: add `nondefaults` to the channel configuration in `environment_vlass2026.yml`
  PIPE-2940: Update coverage configuration to exclude additional lines and improve test reporting
  Update GitHub workflows and environment configuration to include unit tests for VLASS-PL2026.
Rui Xue 2 days ago 70ccb2d1e69f7d5fe145c9d918a38f79efc90820

Pull request #1733: PIPE-2937/PIPE-2929/PIPE-2982
Merge in PIPE/pipeline from PIPE-2937-avoid-writing-large-tmp-large-images-from-the-nf-snr-calculation-function to main

* commit '29110a640d1e0d17d853a7b45d55d91bb63ffa27':
  PIPE-2937: Bypass the `JobRequest` wrapper layer for direct `casaplotms` execution and enable debug tracebacks for mask checking errors
  PIPE-2937: Reduce the number of used `iatool` instances and use in-place Boolean operators to further reduce peak memory usage
  PIPE-2982: Replace vectorized contour plotting of clean mask islands with raster boundary plotting, to avoid excess memory usage for large images
  PIPE-2937: Fix an issue with image removal before closing the associated `ia` instances
  PIPE-2929: Fix a regression related to casa-compatble field name conversion, introduced when porting mosaic self-calibration (PIPE-2001)
  PIPE-2937: Refactor `estimate_SNR` and `estimate_near_field_SNR` to avoid writing large temporary images, improving efficiency and memory usage
  PIPE-2937: Refactor `create_noise_histogram` to improve efficiency and readability:
Rui Xue 2 days ago 29110a640d1e0d17d853a7b45d55d91bb63ffa27 m

PIPE-2937: Bypass the `JobRequest` wrapper layer for direct `casaplotms` execution and enable debug tracebacks for mask checking errors
- pipeline/hif/heuristics/auto_selfcal/selfcal_helpers.py (version 29110a640d1e0d17d853a7b45d55d91bb63ffa27) (diffs)
- pipeline/hif/tasks/selfcal/display.py (version 29110a640d1e0d17d853a7b45d55d91bb63ffa27) (diffs)
Rui Xue 05 Feb 2026 d9b21b61a46e2b5984530ce12c589bfcbf4805cd m

PIPE-2940: Improve test data checkout by adding a directory existence check before cloning the repository
- .github/workflows/env-setup-run-template.yml (version d9b21b61a46e2b5984530ce12c589bfcbf4805cd) (diffs)
Rui Xue 05 Feb 2026 59c8188f469ff3a13e3cf13514ca275405dbc0e4 m

PIPE-2940: Add Pixi environment definitions for the PL2026 development
- pyproject.toml (version 59c8188f469ff3a13e3cf13514ca275405dbc0e4) (diffs)
Rui Xue 03 Feb 2026 ff81a69f88b19bde5acbec5fcc55c199e98bf8fc m

PIPE-2937: Reduce the number of used `iatool` instances and use in-place Boolean operators to further reduce peak memory usage
- pipeline/hif/heuristics/auto_selfcal/selfcal_helpers.py (version ff81a69f88b19bde5acbec5fcc55c199e98bf8fc) (diffs)
Rui Xue 03 Feb 2026 5d766135d6e53fcaf6a8587471448022205f7311 m

PIPE-2982: Replace vectorized contour plotting of clean mask islands with raster boundary plotting, to avoid excess memory usage for large images
- pipeline/h/tasks/common/displays/sky.py (version 5d766135d6e53fcaf6a8587471448022205f7311) (diffs)
- pipeline/hif/tasks/selfcal/display.py (version 5d766135d6e53fcaf6a8587471448022205f7311) (diffs)
Rui Xue 30 Jan 2026 31e86a1d7c971cb9da5283a724b8b03d673745d0 m

PIPE-2937: Fix an issue with image removal before closing the associated `ia` instances
- pipeline/hif/heuristics/auto_selfcal/selfcal_helpers.py (version 31e86a1d7c971cb9da5283a724b8b03d673745d0) (diffs)
Rui Xue 30 Jan 2026 448be2c8aed741f59ac62b3667bc83c98fc73c5b m

PIPE-2929: Fix a regression related to casa-compatble field name conversion, introduced when porting mosaic self-calibration (PIPE-2001)
- pipeline/hif/heuristics/auto_selfcal/auto_selfcal.py (version 448be2c8aed741f59ac62b3667bc83c98fc73c5b) (diffs)
Rui Xue 30 Jan 2026 8c358ee6dbe9eb8c1ea895f1b3e2c287ac16c3e6 m

PIPE-2937: Refactor `estimate_SNR` and `estimate_near_field_SNR` to avoid writing large temporary images, improving efficiency and memory usage
- pipeline/hif/heuristics/auto_selfcal/selfcal_helpers.py (version 8c358ee6dbe9eb8c1ea895f1b3e2c287ac16c3e6) (diffs)
Rui Xue 29 Jan 2026 8a0f7c3bf61b6a94b352e2d27b5db421574d7add m

PIPE-2937: Refactor `create_noise_histogram` to improve efficiency and readability:
- Remove temporary file handling.
- Use `ia.histograms` for histogram calculation.
- pipeline/hif/tasks/selfcal/display.py (version 8a0f7c3bf61b6a94b352e2d27b5db421574d7add) (diffs)
Rui Xue 26 Jan 2026 9ced50c5939dce02f1b0b571ef9ccdcae59533db m

PIPE-2940: Update coverage configuration to exclude additional lines and improve test reporting
- pyproject.toml (version 9ced50c5939dce02f1b0b571ef9ccdcae59533db) (diffs)
Rui Xue 26 Jan 2026 1021a12af545145f4d575bcc69f6f5c524c9318d m

Update GitHub workflows and environment configuration to include unit tests for VLASS-PL2026.
- Modify build-gh-pages.yml to trigger on changes to `environment*.yml`
- Update env-setup-run-template.yml to allow dynamic conda environment file input
- Adjust test-unit.yml to support multiple conda environments and update artifact naming logic
- Refine apisummary.rst to correct module references
- Add `new environment_vlass2026.yml` for specific pipeline dependencies of VLASS-PL2026
Rui Xue 26 Jan 2026 3aedaf8e0ccd58c7e15a27a43f638464f9cdcb43 m

PIPE-2940: add `nondefaults` to the channel configuration in `environment_vlass2026.yml`
- environment_vlass2026.yml (version 3aedaf8e0ccd58c7e15a27a43f638464f9cdcb43) (diffs)