Build: #7 was successful

Job: Tag Release Branch was successful

Build log

The build generated 377 lines of output. Download or view full build log.

21-Aug-2019 21:27:53 Build CASA - Release - release-pipeline-5.6.0 - Tag Release Branch #7 (CASA-REL564-TBFP-7) started building on agent rh7bld.cv.nrao.edu
21-Aug-2019 21:27:53 Remote agent on host rh7bld.cv.nrao.edu
21-Aug-2019 21:27:53 Build working directory is /export/home/rh7bld/bamboohome/work/xml-data/build-dir/CASA-REL564-TBFP
21-Aug-2019 21:27:53 Executing build CASA - Release - release-pipeline-5.6.0 - Tag Release Branch #7 (CASA-REL564-TBFP-7)
21-Aug-2019 21:27:53 Starting task 'Clean working directory task' of type 'com.atlassian.bamboo.plugins.bamboo-artifact-downloader-plugin:cleanWorkingDirectoryTask'
21-Aug-2019 21:27:53 Cleaning working directory '/export/home/rh7bld/bamboohome/work/xml-data/build-dir/CASA-REL564-TBFP'
21-Aug-2019 21:27:55 Finished task 'Clean working directory task' with result: Success
21-Aug-2019 21:27:55 Running pre-build action: VCS Version Collector
21-Aug-2019 21:27:55
Substituting variable: ${bamboo.agentWorkingDirectory} with /export/home/rh7bld/bamboohome/work/xml-data/build-dir
21-Aug-2019 21:27:55
Substituting variable: ${bamboo.repository.branch.name} with release/pipeline/5.6.0
21-Aug-2019 21:27:55
Substituting variable: ${bamboo.buildNumber} with 7
21-Aug-2019 21:27:55
Substituting variable: ${bamboo.planRepository.revision} with 96a1a12573bf099dd4f5e8ca580cb3d8ce9cc6c1
21-Aug-2019 21:27:55
Substituting variable: ${bamboo.planRepository.repositoryUrl} with ssh://git@open-bitbucket.nrao.edu:7999/casa/casa.git
21-Aug-2019 21:27:55
Substituting variable: ${bamboo.planRepository.repositoryUrl} with ssh://git@open-bitbucket.nrao.edu:7999/casa/casa.git
21-Aug-2019 21:27:55
Substituting variable: ${bamboo.repository.branch.name} with release/pipeline/5.6.0
21-Aug-2019 21:27:55
Substituting variable: ${bamboo.build.working.directory} with /export/home/rh7bld/bamboohome/work/xml-data/build-dir/CASA-REL564-TBFP
21-Aug-2019 21:27:55
Substituting variable: ${bamboo.planRepository.repositoryUrl} with ssh://git@open-bitbucket.nrao.edu:7999/casa/casa.git
21-Aug-2019 21:27:55
Substituting variable: ${bamboo.repository.branch.name} with release/pipeline/5.6.0
21-Aug-2019 21:27:55
Substituting variable: ${bamboo.build.working.directory} with /export/home/rh7bld/bamboohome/work/xml-data/build-dir/CASA-REL564-TBFP
21-Aug-2019 21:27:55
Substituting variable: ${bamboo.repository.branch.name} with release/pipeline/5.6.0
21-Aug-2019 21:27:55
Substituting variable: ${bamboo.build.working.directory} with /export/home/rh7bld/bamboohome/work/xml-data/build-dir/CASA-REL564-TBFP
21-Aug-2019 21:27:55
Substituting variable: ${bamboo.planRepository.repositoryUrl} with ssh://git@open-bitbucket.nrao.edu:7999/casa/casa.git
21-Aug-2019 21:27:55 Starting task 'Script' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script'
21-Aug-2019 21:27:55
Beginning to execute external process for build 'CASA - Release - release-pipeline-5.6.0 - Tag Release Branch #7 (CASA-REL564-TBFP-7)'
... running command line:
/bin/sh /export/home/rh7bld/bamboohome/work/temp/CASA-REL564-TBFP-7-ScriptBuildTask-5548267533988702553.sh
... in: /export/home/rh7bld/bamboohome/work/xml-data/build-dir/CASA-REL564-TBFP
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21-Aug-2019 21:27:55 7
21-Aug-2019 21:27:55 96a1a12573bf099dd4f5e8ca580cb3d8ce9cc6c1
21-Aug-2019 21:27:55 ssh://git@open-bitbucket.nrao.edu:7999/casa/casa.git
21-Aug-2019 21:27:56 Cloning into 'casa-pkg'...
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21-Aug-2019 21:28:23 Checking out files: 100% (3640/3640), done.
21-Aug-2019 21:28:24 Fetching origin
21-Aug-2019 21:28:24 Already up-to-date.
21-Aug-2019 21:28:25 Switched to a new branch 'release/pipeline/5.6.0'
21-Aug-2019 21:28:25 Branch release/pipeline/5.6.0 set up to track remote branch release/pipeline/5.6.0 from origin.
21-Aug-2019 21:28:32 Starting a Gradle Daemon (subsequent builds will be faster)
21-Aug-2019 21:28:39 :compileJava UP-TO-DATE
21-Aug-2019 21:28:45 :compileGroovy
21-Aug-2019 21:28:45 :processResources UP-TO-DATE
21-Aug-2019 21:28:45 :classes
21-Aug-2019 21:28:46 :jar
21-Aug-2019 21:28:46 :compileTestJava UP-TO-DATE
21-Aug-2019 21:28:48 :compileTestGroovy
21-Aug-2019 21:28:48 :processTestResources UP-TO-DATE
21-Aug-2019 21:28:48 :testClasses
21-Aug-2019 21:28:53 :test
21-Aug-2019 21:28:55 Could not find metadata edu.nrao.gradle:casa-bt-tasks:1.0-SNAPSHOT/maven-metadata.xml in remote (file:/export/home/rh7bld/bamboohome/work/xml-data/build-dir/CASA-REL564-TBFP/casa-pkg/gradle/repo)
21-Aug-2019 21:28:55 Could not find metadata edu.nrao.gradle:casa-bt-tasks/maven-metadata.xml in remote (file:/export/home/rh7bld/bamboohome/work/xml-data/build-dir/CASA-REL564-TBFP/casa-pkg/gradle/repo)
21-Aug-2019 21:28:55 :uploadArchives
21-Aug-2019 21:28:55
21-Aug-2019 21:28:55 BUILD SUCCESSFUL
21-Aug-2019 21:28:55
21-Aug-2019 21:28:55 Total time: 29.33 secs
21-Aug-2019 21:29:00 :createTag
21-Aug-2019 21:29:00 workdir: /export/home/rh7bld/bamboohome/work/xml-data/build-dir/CASA-REL564-TBFP/taggitworkdir
21-Aug-2019 21:29:00 sourcedir: /export/home/rh7bld/bamboohome/work/xml-data/build-dir/CASA-REL564-TBFP/taggitworkdir/casa
21-Aug-2019 21:29:00 gitremote: ssh://git@open-bitbucket.nrao.edu:7999/casa/casa.git
21-Aug-2019 21:29:00 branch: release/pipeline/5.6.0
21-Aug-2019 21:29:00 Push option: true
21-Aug-2019 21:29:00 Clone command: git clone ssh://git@open-bitbucket.nrao.edu:7999/casa/casa.git casa
21-Aug-2019 21:29:00 Cloning into 'casa'...
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21-Aug-2019 21:29:27
21-Aug-2019 21:29:27 Already on 'master'
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21-Aug-2019 21:29:28 Already up-to-date.
21-Aug-2019 21:29:28
21-Aug-2019 21:29:28 edu.nrao.gradle.casa.build.GitRepository@43049021
21-Aug-2019 21:29:28 getLastTag called with
21-Aug-2019 21:29:28 branch: release/pipeline/5.6.0
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21-Aug-2019 21:29:28 sourceDir: /export/home/rh7bld/bamboohome/work/xml-data/build-dir/CASA-REL564-TBFP/taggitworkdir/casa
21-Aug-2019 21:29:28 Resolving instrument tag
21-Aug-2019 21:29:28 Instrument release branch
21-Aug-2019 21:29:28 tagGroup release-pipeline-5.6.0
21-Aug-2019 21:29:28 Checking out release/pipeline/5.6.0
21-Aug-2019 21:29:28 Branch release/pipeline/5.6.0 set up to track remote branch release/pipeline/5.6.0 from origin.
21-Aug-2019 21:29:28 Switched to a new branch 'release/pipeline/5.6.0'
21-Aug-2019 21:29:28
21-Aug-2019 21:29:28 Updating release/pipeline/5.6.0
21-Aug-2019 21:29:29 Already up-to-date.
21-Aug-2019 21:29:29
21-Aug-2019 21:29:29 [release, pipeline, 5.6.0]
21-Aug-2019 21:29:29 grep release-pipeline-5.6.0Last tag: release-pipeline-5.6.0-5
21-Aug-2019 21:29:29 Constructing a new tag based on release-pipeline-5.6.0-5
21-Aug-2019 21:29:29 Branch: release/pipeline/5.6.0
21-Aug-2019 21:29:29 Current prefix: release
21-Aug-2019 21:29:29 Current id: 5.6.0
21-Aug-2019 21:29:29 Current instr: pipeline
21-Aug-2019 21:29:29 release-pipeline-5.6.0-6
21-Aug-2019 21:29:29 Last tag: release-pipeline-5.6.0-5
21-Aug-2019 21:29:29 Branch: release/pipeline/5.6.0
21-Aug-2019 21:29:29 Comparing tag to branch with: git diff --exit-code release-pipeline-5.6.0-5 release/pipeline/5.6.0
21-Aug-2019 21:29:29 diff --git a/code/synthesis/CalTables/CTPatchedInterp.cc b/code/synthesis/CalTables/CTPatchedInterp.cc
21-Aug-2019 21:29:29 index 888ec07..a45e972 100644
21-Aug-2019 21:29:29 --- a/code/synthesis/CalTables/CTPatchedInterp.cc
21-Aug-2019 21:29:29 +++ b/code/synthesis/CalTables/CTPatchedInterp.cc
21-Aug-2019 21:29:29 @@ -1184,8 +1184,8 @@ void CTPatchedInterp::setSpwMap(Vector<Int>& spwmap) {
21-Aug-2019 21:29:29
21-Aug-2019 21:29:29
21-Aug-2019 21:29:29    // Alert user if too many spws specified
21-Aug-2019 21:29:29 -  //  TBD
21-Aug-2019 21:29:29 -  //  if (spwmap.nelements()>nMSSpw_)
21-Aug-2019 21:29:29 +  if (spwmap.nelements()>uInt(nMSSpw_))
21-Aug-2019 21:29:29 +    throw(AipsError("Specified spwmap has more elements ("+String::toString(spwmap.nelements())+") than the number of spectral windows in the MS ("+String::toString(nMSSpw_)+")."));
21-Aug-2019 21:29:29      
21-Aug-2019 21:29:29    // Handle auto-fanout
21-Aug-2019 21:29:29    if (spwmap(0)==-999) {
21-Aug-2019 21:29:29 diff --git a/code/synthesis/MeasurementComponents/KJones.cc b/code/synthesis/MeasurementComponents/KJones.cc
21-Aug-2019 21:29:29 index e0d76d8..9b779bc 100644
21-Aug-2019 21:29:29 --- a/code/synthesis/MeasurementComponents/KJones.cc
21-Aug-2019 21:29:29 +++ b/code/synthesis/MeasurementComponents/KJones.cc
21-Aug-2019 21:29:29 @@ -687,6 +687,7 @@ void KJones::setApply(const Record& apply) {
21-Aug-2019 21:29:29    if (spwMap().nelements()>0) {
21-Aug-2019 21:29:29      Vector<Double> tmpfreqs;
21-Aug-2019 21:29:29      tmpfreqs.assign(KrefFreqs_);
21-Aug-2019 21:29:29 +    AlwaysAssert(spwMap().nelements()<=uInt(nSpw()),AipsError);  // Should be guaranteed by now
21-Aug-2019 21:29:29      for (uInt ispw=0;ispw<spwMap().nelements();++ispw)
21-Aug-2019 21:29:29        if (spwMap()(ispw)>-1)
21-Aug-2019 21:29:29         KrefFreqs_(ispw)=tmpfreqs(spwMap()(ispw));
21-Aug-2019 21:29:29 @@ -749,11 +750,25 @@ void KJones::setCallib(const Record& callib,
21-Aug-2019 21:29:29    }
21-Aug-2019 21:29:29    KrefFreqs_/=1.0e9;  // In GHz
21-Aug-2019 21:29:29
21-Aug-2019 21:29:29 +  // Manage spwmap in interim manner
21-Aug-2019 21:29:29 +  spwMap().assign(callib.asRecord(0).asArrayInt("spwmap"));
21-Aug-2019 21:29:29 +
21-Aug-2019 21:29:29 +  // If more than one callib entry, currently have to assume spwmap uniformity
21-Aug-2019 21:29:29 +  if (spwMap().nelements()>0 && callib.nfields()>3)
21-Aug-2019 21:29:29 +    logSink() << LogIO::WARN << "Assuming uniform spwmap for frequency pivot point for all callib entries for caltable="
21-Aug-2019 21:29:29 +              << ct_->tableName()
21-Aug-2019 21:29:29 +              << ": spwmap = " << spwMap()
21-Aug-2019 21:29:29 +              << LogIO::POST;
21-Aug-2019 21:29:29 +
21-Aug-2019 21:29:29 +  // Catch spwmap that is too long
21-Aug-2019 21:29:29 +  if (spwMap().nelements()>uInt(nSpw()))
21-Aug-2019 21:29:29 +    throw(AipsError("Specified spwmap has more elements ("+String::toString(spwMap().nelements())+") than the number of spectral windows in the MS ("+String::toString(nSpw())+")."));
21-Aug-2019 21:29:29
21-Aug-2019 21:29:29    // Re-assign KrefFreq_ according spwmap (if any)
21-Aug-2019 21:29:29    if (spwMap().nelements()>0) {
21-Aug-2019 21:29:29      Vector<Double> tmpfreqs;
21-Aug-2019 21:29:29      tmpfreqs.assign(KrefFreqs_);
21-Aug-2019 21:29:29 +    AlwaysAssert(spwMap().nelements()<=uInt(nSpw()),AipsError);  // Should be guaranteed by now
21-Aug-2019 21:29:29      for (uInt ispw=0;ispw<spwMap().nelements();++ispw)
21-Aug-2019 21:29:29        if (spwMap()(ispw)>-1)
21-Aug-2019 21:29:29         KrefFreqs_(ispw)=tmpfreqs(spwMap()(ispw));
21-Aug-2019 21:29:29 diff --git a/code/synthesis/MeasurementComponents/SolvableVisCal.cc b/code/synthesis/MeasurementComponents/SolvableVisCal.cc
21-Aug-2019 21:29:29 index de7830a..66ce8e7 100644
21-Aug-2019 21:29:29 --- a/code/synthesis/MeasurementComponents/SolvableVisCal.cc
21-Aug-2019 21:29:29 +++ b/code/synthesis/MeasurementComponents/SolvableVisCal.cc
21-Aug-2019 21:29:29 @@ -537,7 +537,9 @@ void SolvableVisCal::setApply(const Record& apply) {
21-Aug-2019 21:29:29    if (apply.isDefined("spwmap"))
21-Aug-2019 21:29:29      spwMap().assign(apply.asArrayInt("spwmap"));
21-Aug-2019 21:29:29
21-Aug-2019 21:29:29 -  //  cout << "SVC::setApply: spwMap()=" << spwMap() << endl;
21-Aug-2019 21:29:29 +  // Catch spwmap that is too long
21-Aug-2019 21:29:29 +  if (spwMap().nelements()>uInt(nSpw()))
21-Aug-2019 21:29:29 +    throw(AipsError("Specified spwmap has more elements ("+String::toString(spwMap().nelements())+") than the number of spectral windows in the MS ("+String::toString(nSpw())+")."));
21-Aug-2019 21:29:29
21-Aug-2019 21:29:29    // TBD: move interval to VisCal version?
21-Aug-2019 21:29:29    // TBD: change to "reach"
21-Aug-2019 21:29:29 diff --git a/gcwrap/python/scripts/task_polfromgain.py b/gcwrap/python/scripts/task_polfromgain.py
21-Aug-2019 21:29:29 index 4dfc249..222ceb6 100644
21-Aug-2019 21:29:29 --- a/gcwrap/python/scripts/task_polfromgain.py
21-Aug-2019 21:29:29 +++ b/gcwrap/python/scripts/task_polfromgain.py
21-Aug-2019 21:29:29 @@ -35,8 +35,9 @@ def polfromgain(vis,tablein,caltable,paoffset):
21-Aug-2019 21:29:29
21-Aug-2019 21:29:29                  casalog.post("New caltable, "+caltable+", corrected for linear polarization, will be generated.")
21-Aug-2019 21:29:29                  mytb.open(tablein)
21-Aug-2019 21:29:29 -                mytb.copy(newtablename=caltable,deep=True)
21-Aug-2019 21:29:29 +                myout=mytb.copy(newtablename=caltable,deep=True)
21-Aug-2019 21:29:29                  mytb.close()
21-Aug-2019 21:29:29 +                myout.close()
21-Aug-2019 21:29:29                  rempol=True
21-Aug-2019 21:29:29              else:
21-Aug-2019 21:29:29                  casalog.post("No new caltable will be generated")
21-Aug-2019 21:29:29 @@ -86,7 +87,8 @@ def polfromgain(vis,tablein,caltable,paoffset):
21-Aug-2019 21:29:29                  antok=mypl.zeros(nant,dtype=bool)
21-Aug-2019 21:29:29
21-Aug-2019 21:29:29                  for iant in range(nant):
21-Aug-2019 21:29:29 -                    st=mytb.query('FIELD_ID=='+str(ifld)+' && SPECTRAL_WINDOW_ID=='+str(ispw)+' && ANTENNA1=='+str(iant))
21-Aug-2019 21:29:29 +                    qstring='FIELD_ID=='+str(ifld)+' && SPECTRAL_WINDOW_ID=='+str(ispw)+' && ANTENNA1=='+str(iant)
21-Aug-2019 21:29:29 +                    st=mytb.query(query=qstring)
21-Aug-2019 21:29:29                      nrows=st.nrows()
21-Aug-2019 21:29:29                      if nrows > 0:
21-Aug-2019 21:29:29
21-Aug-2019 21:29:29 @@ -98,6 +100,7 @@ def polfromgain(vis,tablein,caltable,paoffset):
21-Aug-2019 21:29:29                          # Escape if insufficient data
21-Aug-2019 21:29:29                          if (nrows-mypl.sum(flags))<3:
21-Aug-2019 21:29:29                              antok[iant]=False
21-Aug-2019 21:29:29 +                            st.close()
21-Aug-2019 21:29:29                              continue
21-Aug-2019 21:29:29
21-Aug-2019 21:29:29
21-Aug-2019 21:29:29 @@ -157,7 +160,7 @@ def polfromgain(vis,tablein,caltable,paoffset):
21-Aug-2019 21:29:29                              else:
21-Aug-2019 21:29:29                                  st.close()
21-Aug-2019 21:29:29                                  raise Exception, 'Spurious fractional polarization!'
21-Aug-2019 21:29:29 -               
21-Aug-2019 21:29:29 +
21-Aug-2019 21:29:29                      st.close()
21-Aug-2019 21:29:29
21-Aug-2019 21:29:29                  nantok=mypl.sum(antok)
21-Aug-2019 21:29:29
21-Aug-2019 21:29:29 Comparison returned: 1
21-Aug-2019 21:29:29 Checkout: git checkout release/pipeline/5.6.0
21-Aug-2019 21:29:30 Already on 'release/pipeline/5.6.0'
21-Aug-2019 21:29:30
21-Aug-2019 21:29:30 [git, tag, -a, release-pipeline-5.6.0-6, -m 'Automatic tag']
21-Aug-2019 21:29:30
21-Aug-2019 21:29:30 Done tagging release-pipeline-5.6.0-6
21-Aug-2019 21:29:30 Pushing release-pipeline-5.6.0-6 to origin
21-Aug-2019 21:29:30 To ssh://git@open-bitbucket.nrao.edu:7999/casa/casa.git
21-Aug-2019 21:29:30 * [new tag]         release-pipeline-5.6.0-6 -> release-pipeline-5.6.0-6
21-Aug-2019 21:29:30
21-Aug-2019 21:29:30 Pushed release-pipeline-5.6.0-6 to origin
21-Aug-2019 21:29:30
21-Aug-2019 21:29:30 BUILD SUCCESSFUL
21-Aug-2019 21:29:30
21-Aug-2019 21:29:30 Total time: 34.489 secs
21-Aug-2019 21:29:31 Finished task 'Script' with result: Success
21-Aug-2019 21:29:31 Running post build plugin 'Docker Container Cleanup'
21-Aug-2019 21:29:31 Running post build plugin 'NCover Results Collector'
21-Aug-2019 21:29:31 Running post build plugin 'Clover Results Collector'
21-Aug-2019 21:29:31 Running post build plugin 'npm Cache Cleanup'
21-Aug-2019 21:29:31 Running post build plugin 'Artifact Copier'
21-Aug-2019 21:29:31 Finalising the build...
21-Aug-2019 21:29:31 Stopping timer.
21-Aug-2019 21:29:31 Build CASA-REL564-TBFP-7 completed.
21-Aug-2019 21:29:31 Running on server: post build plugin 'NCover Results Collector'
21-Aug-2019 21:29:31 Running on server: post build plugin 'Build Hanging Detection Configuration'
21-Aug-2019 21:29:31 Running on server: post build plugin 'Clover Delta Calculator'
21-Aug-2019 21:29:31 Running on server: post build plugin 'Maven Dependencies Postprocessor'
21-Aug-2019 21:29:31 All post build plugins have finished
21-Aug-2019 21:29:31 Generating build results summary...
21-Aug-2019 21:29:31 Saving build results to disk...
21-Aug-2019 21:29:31 Logging substituted variables...
21-Aug-2019 21:29:31 Indexing build results...
21-Aug-2019 21:29:31 Finished building CASA-REL564-TBFP-7.