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1##################### generated by xml-casa (v2) from imager.xml ####################
2##################### 2aa9396ff96d93f62460a4d6aac96ece ##############################
3from __future__ import absolute_import
4from .__casac__.imager import imager as _imager
6from .errors import create_error_string
7from .typecheck import CasaValidator as _validator
8_pc = _validator( )
9from .coercetype import coerce as _coerce
12class imager:
13 _info_group_ = """imager"""
14 _info_desc_ = """tool for synthesis imaging"""
15 ### self
16 def __init__(self, *args, **kwargs):
17 """This is used to construct {tt imager} tools associated
18 with a MeasurementSet. The {tt imager} tool may then be
19 used to generate various types of images. Note that
20 a new executable is started every time the constructor
21 is called.
23 This returns a Glish variable containing the tool functions of
24 imager in an alternate universe that you have to tunnel to with a wormhole
25 """
26 self._swigobj = kwargs.get('swig_object',None)
27 if self._swigobj is None:
28 self._swigobj = _imager()
30 def advise(self, takeadvice=True, amplitudeloss=float(0.05), fieldofview=[ ]):
31 """Advise on recommended values of certain parameters. Return these
32 values and optionally use them in Imager.
34 The calculations are performed as following:
36 begin{description}
37 item[cell] The maximum uv distance in wavelength is found and then half of the
38 inverse is taken as the maximum cellsize allowed.
39 item[pixels] The field of view is converted to a number of pixels
40 using the calculated cell size.
41 item[facets] The number of facets on an axis is calculated in two
42 different ways. The first method simply requires that the peeling of
43 facets away from the celestial sphere should not cause an amplitude
44 drop of more than the argument {tt amplitudeloss}. The positions may
45 be incorrect, but all the sources will be removed correctly. The
46 second method requires that the source positions be accurate to the
47 same fraction of the beam specified by {tt amplitudeloss}. The
48 second calculates the second moment in w and in uv distance and
49 chooses the number of facets correspondingly. The first method does
50 the same but after fitting a plane to the sampling: $w = a u + b v$.
51 For an approximately coplanar array, the positions may be wrong but
52 the removal of sidelobes will be accurate. The number of facets
53 returned is the second, usually smaller, number. The formula used
54 is:
55 begin{equation}
56 N_{facets} = N_{pixels} sqrt{{{Delta theta}over{sqrt{8 delta A}}}{w_{rms}}over{uv_{rms}}}
57 end{equation}
58 where $Delta theta$ is the cellsize in radians, and $delta A$ is
59 the amplitude loss. This formula can be derived from (a) the peeling
60 of facets from the celestial sphere, and (b) a quadratic approximation
61 for the beam size both in the plane of the sky and along the $w$ axis.
62 end{description}
63 """
64 return self._swigobj.advise(takeadvice, amplitudeloss, fieldofview)
66 def advisechansel(self, freqstart=float(1.0e6), freqend=float(1.1e6), freqstep=float(100.0), freqframe='LSRK', msname='', fieldid=int(0), getfreqrange=False, spwselection=''):
67 """Basically tells you what channels of which spectral window need to be
68 selected for your image spectral parameters. The freqstep is used to
69 calulate the extra padding needed for data selection at the begining
70 and end of the range. The freqframe parameter is the frame in which
71 the frequency range is being given. It will be converted to the frame
72 of the data with time to locate which channel match.
73 A record will be returned with an element for each ms used in selectvis.
74 Each element of the record will have the spwids and channel start and nchan for each spwid.
75 if the parameter msname is used then the MSs associated associated with
76 this tool (that have been either 'open'ed or 'selectvis'ed) are ignored
77 In this mode it is a helper function to the general world ...no need to
78 open or selectvis. You need to specify the field_id for which this calculation is
79 being done for in the helper mode.
80 If you have already set MS's and selected data and msname="" then
81 the calulation is done for the field(s) selected in selectvis.
83 If the parameter {tt getfreqrange=True} then the reverse is requested. You set {tt spwselection} to be the range of data selection you want to use and you'll get the range of frequency covered in the frame you set.
84 """
85 return self._swigobj.advisechansel(freqstart, freqend, freqstep, freqframe, msname, fieldid, getfreqrange, spwselection)
87 def approximatepsf(self, psf=''):
88 """Calculate the approximate point spread function.
89 {em Note that the model visibilities are updated}.
91 Some types of imaging do not yield a well-defined point spread
92 function. For example, mosaicing or single dish imaging both yield
93 point spread functions that are position dependent. Nevertheless, one
94 can still usefully define an {em approximate} PSF that is of some
95 utility. This is calculated by doing the following calculation: a
96 point source is located at the center of the specified coordinate
97 system and the model data predicted. The approximate PSF is then formed from
98 those model data using the full sky equation. For regular sampling in
99 the image plane, this approximate PSF is actually quite good. It can
100 be used in a deconvolution. For a mosaic with similar uv sampling per
101 pointing, the approximate PSF is roughly the PSF per pointing
102 multiplied by the primary beam. For a single dish image, it is roughly
103 the telescope primary beam convolved with itself (if the
104 gridfunction='pb' was selected).
105 """
106 return self._swigobj.approximatepsf(psf)
108 def boxmask(self, mask='', blc=[ int(0),int(0),int(0),int(0) ], trc=[ ], value=float(1.0)):
109 """A mask image is an image with the same shape as the other images but
110 with values between 0.0 and 1.0 as a pixel value. Mask images are used in
111 imager to control the region selected in a deconvolution.
113 In the Clark CLEAN, the mask image can usefully have any value between
114 0.0 and 1.0. Intermediate value discourage but do not rule out
115 selection of clean components in that region. This is accomplished by
116 multiplying the residual image by the mask prior to entering the minor
117 cycle. Note that if you do use a mask for the Clark or Hogbom Clean,
118 it must cover only a quarter of the image. boxmask does not enforce
119 this requirement.
120 """
121 return self._swigobj.boxmask(mask, blc, trc, value)
123 def calcuvw(self, fields=[ int(-1) ], refcode='', reuse=True):
124 """This calculates (u, v, w) positions for the visibilities using the antenna
125 and feed positions and offsets, the time, and the phase tracking center(s).
127 """
128 return self._swigobj.calcuvw(fields, refcode, reuse)
130 def clean(self, algorithm='clark', niter=int(1000), gain=float(0.1), threshold=[ ], displayprogress=False, model=[ ], keepfixed=[ bool(False) ], complist='', mask=[ ], image=[ ], residual=[ ], psfimage=[ ], interactive=False, npercycle=int(100), masktemplate=''):
131 """Makes a clean image using either the Hogbom, Clark, multi-scale or multi-field
132 algorithms. The Clark algorithm is the default. The clean is performed
133 on the residual image calculated from the visibility data currently
134 selected. Hence the first step performed in clean is to transform the
135 current model or models (optionally including a componentlist) to fill
136 in the MODEL_DATA column, and then inverse transform the residual
137 visibilities to get a residual image. This residual image is then
138 cleaned using the corresponding point spread function. This means that
139 the initial model is used as the starting point for the
140 deconvolution. Thus if you want to restart a clean, simply set the
141 model to the model that was previously produced by clean.
143 Rather than explicit CLEAN boxes, mask images are used to constrain
144 the region that is to be deconvolved. To make mask images,
145 use either boxmask (to define a mask
146 via the corner locations blc and trc) or
147 mask (to define a mask via
148 thresholding an existing image) or regionmask (to make masks via regions using the regionmanager or interactively through the viewer) . The default mask is the inner quarter
149 of the image.
151 The CLEAN deconvolution is joint in whatever Stokes parameters are
152 present. Thus it searchs for peaks in either $I$ or $I+|V|$ or
153 $I+sqrt{Q^2+U^2+V^2}$, the rationale for the latter two forms being
154 to be biased towards finding strongly polarized pixels first (these
155 forms are also the maximum eigenvalue of the coherency matrix). The
156 PSF is constrained to be the same in all polarizations (a feature of
157 this implementation, not of the Hamaker-Bregman-Sault formalism). But the option of
158 searching peaks in the stokes planes independently is available via
159 the {tt clarkstokes} parameter
163 The clean algorithms possible are:
164 begin{description}
165 item[Hogbom] The classic algorithm: points are found iteratively
166 by searching for the peak. Each point is subtracted from the
167 full residual image using the shifted and scaled point spread
168 function.
169 item[Multiscale] An experimental multi-scale clean algorithm is invoked.
170 The algorithm is fully described in
171 deconvolver.
172 item[Clark] The faster algorithm: the cleaning is split into
173 minor and major cycles. In the minor cycles only the brightest
174 points are cleaned, using a subset of the point spread function.
175 In the major cycle, the points thus found are subtracted correctly
176 by using an FFT-based convolution.
177 item[Multi-field] Cleaning is split into minor and major
178 cycles. For each field, a Clark-style minor cycle is performed.
179 In the major cycle, the points thus found are subtracted
180 either from the original visibilities (for multiple fields)
181 or using a convolution (for only one field). The latter is
182 much faster. Multi-field imaging has been implemented for
183 Clark, Hogbom, and Multi-scale deconvolution algorithms.
184 item[Cotton-Schwab] Cleaning is split into minor and major
185 cycles. For each field, a Clark-style minor cycle is performed.
186 In the major cycle, the points thus found are subtracted
187 from the original visibilities. A fast variant does a convolution
188 using a FFT. This will be faster for large numbers of
189 visibilities. Double the image size from that used for Cotton-Schwab
190 and set a mask to clean only the inner quarter.
191 item[Wide-field] The user will need to use a wide-field algorithm to
192 deconvolve if the array is not coplanar over the field of view being
193 imaged . The technique used is to break the field being imaged into
194 smaller pieces (facets), over each of which the array appear
195 planar. We implement a rectangular facetting scheme. If the number of
196 facets specified in defineimage is
197 greater than one, Either wfhogbom or wfclark algorithm has to be
198 selected here to perform a wide-field decovolution. The function
199 advise can be used to calculate or
200 check if you need to use a wide-field deconvolution. Note that
201 aliasing can be reduced by using the {tt padding} argument in
202 setoptions. In practice the
203 previous sentence means that if you notice the clean to diverge at the
204 edges of the facets then you need to use a larger amount of padding
205 for the FT; the default being 1.2. Wide-field imaging has been
206 implemented for Clark and Hogbom algorithms.
207 end{description}
209 The multi-field clean should be used if either of two conditions
210 hold:
211 begin{enumerate}
212 item Multiple fields are to be cleaned simultaneously {bf OR}
213 item Primary beam correction is enabled. In this case, a
214 mosaiced clean is performed.
215 end{enumerate}
217 Note that for the single pointing algorithms, only a quarter of the
218 image may be cleaned. If no mask is set, then the cleaned region
219 defaults to the inner quarter. If a mask larger than a quarter of the
220 image is set, then only the inner quarter part of that mask is used.
221 However, for the wide-field and multi-field imaging (including the
222 Cotton-Schwab algorithm), the entire field may be imaged because the
223 major cycles either do an exact subtraction from the visibilities or
224 because PSF extent is more than twice the extent of the primary beam
225 support.
227 Before {tt clean} can be run, you must run {tt selectvis} and {tt defineimage}.
228 Before {tt clean} can be run with a multi-field algorithm (especially for mosaic), you should run
229 {tt setvp}. You may want to run {tt setmfcontrol} before running {tt clean}
230 with a multi-field or wide-field algorithm, though the default control values
231 may be acceptable. Before {tt clean} can be run with a multi-scale algorithm,
232 {tt setscales} must be run.
235 Interactive cleaning/masking: If the user wants to see what the clean
236 image looks like after npercycle iteration and mask or modify the mask
237 each time, he/she should set {tt interactive=True} and give npercycle to a
238 fraction of niter. A viewer with the last residual image along with an
239 overlayed mask appear after every npercycle iteration. The user can
240 add or delete regions (by clicking on the appropriate button) to the
241 mask using the region button and drawing regions and double clicking
242 inside the region. When satisfied and ready to continue cleaning press 'DONE
243 with masking' (if the user want to terminate the cleaning process use
244 the 'STOP' button). The button 'No more mask changes' should be used
245 if the user want clean to proceed without any further interruption.
246 Even if {tt interactive=False}, and if the parameter
247 'mask' is non-empty, it is still used in limiting the search area for
248 clean components. If the parameter 'masktemplate' is not empty this
249 means that the user want to use an apriori image to make the mask the
250 first time (e.g a previously cleaned image)
252 This function returns a record containing convergence, iterations used and threshold reached.
253 """
254 return self._swigobj.clean(algorithm, niter, gain, threshold, displayprogress, model, keepfixed, complist, mask, image, residual, psfimage, interactive, npercycle, masktemplate)
256 def clipimage(self, image='', threshold=[ ]):
257 """All pixels in the image with Stokes I less than some threshold
258 are set to zero. This is useful prior to self-calibration where one
259 oftens wishes to remove negative pixels from the model. Note that
260 if the image has polarization information, then the polarized
261 part of a pixel is also set to zero if Stokes I is less than the
262 threshold.
263 """
264 return self._swigobj.clipimage(image, threshold)
266 def clipvis(self, threshold=[ ]):
267 """All visibilities where the residual exceeds some threshold
268 are flagged. This provides a simple way of flagging bad
269 data.
270 """
271 return self._swigobj.clipvis(threshold)
273 def close(self):
274 """This is used to close {tt imager} tools. Note that the
275 data is written to disk. The {tt imager} process keeps running
276 until a done tool function call is performed.
277 """
278 return self._swigobj.close()
280 def defineimage(self, nx=int(128), ny=int(-1), cellx=[ ], celly=[ ], stokes='I', phasecenter=[ ], mode='mfs', nchan=int(-1), start=[ ], step=[ ], spw=[ int(0) ], restfreq=[ ], outframe='LSRK', veltype='radio', facets=int(1), movingsource=[ ], distance=[ ], projection='SIN'):
281 """Define the default image parameters. If an image is to be
282 made, then these parameters are used in the construction
283 of the image. Thus, for example, the tool function make
284 makes an (empty) image using these parameters.
286 Note that some parameters can be specified either in canonical units
287 or via measures. To establish default values, the ids for the default
288 spectral window and default field id must be given.
290 The parameter {tt mode} can be one of the following:
291 begin{itemize}
292 item mfs
293 item channel
294 item velocity or opticalvelocity
295 item frequency
296 end{itemize}
298 {tt imager} can perform multi-frequency synthesis over several
299 spectral windows (mode='mfs'). To achieve this, you should set spwid
300 to an array of the required spectral windows ({em e.g.} {tt
301 spwid=[0,1]}). WARNING: For multifrequency synthesis, 'mfs', it is
302 important that the spwid's selected in selectvis be the SAME
303 as the one selected in {tt defineimage}. Otherwise the frequency at which
304 the image is made is not going to be the same as to the one as the one
305 used in gridding the visibility and can lead to image artifacts. For
306 {tt mode='velocity'} and {tt mode='frequency'} the {tt step}
307 parameter has to be a measure/quantity of velocity or frequency,
308 otherwise for {tt mode='channel'} step is the number of data
309 channels to be averaged to make one image channel( see examples
310 below).
313 The phase center of the image defaults to that of the specified
314 phasecenter (the first fieldid in the ms is taken if none is
315 specified), this parameter can be a fieldid or a measure string or the
316 record output from the direction function of the measures tool( direction ).
317 This is important if you have multiple pointings in the data. The user
318 would have used selectvis to select which pointings would be used in imaging. If the
319 conversion from the observed direction requires frame information then
320 this is taken as follows: begin{itemize} item Direction information,
321 including the coordinate system, is taken from the relevant entry in
322 the Field table of the MeasurementSet. item The epoch is taken from
323 the time of observation of each visibility. item A position is
324 specified via the {tt imager} tool function setoptions
325 end{itemize}
327 If the specified number of facets is greater than unity then the image
328 is split into facets (this number along the x and y axes) and
329 processed. This is necessary when using wide-field algorithm for
330 deconvolving the image, in cases of non-coplanar arrays (e.g the VLA
331 at low frequencies but can be safely left at 1 for the ATCA or WSRT).
332 This is now recommended only when memory or image size is of a problem,
333 otherwise for widefield issues, wprojection (ftmachine parameter in setoptions) is recommended with a single
334 facet.
336 For spectral imaging {tt defineimage} and {tt selectvis} defines the
337 spectral channels that are imaged. Examples are given in the selectvis section.
338 The parameter {tt restfreq} can be used to define what rest frequency
339 to use in the resulting images. If none is specified imager will try
340 to use the one that is defined in the ms. It will use the first one
341 defined in the first spectral window selected.
343 For wide-field or 3D imaging see setoptions
344 section for some examples.
346 If the telescope is observing moving source (e.g planet or moon) over
347 a period of time. One may wish to image in a frame where the source is
348 fixed. The parameter {tt movingsource} is for that. Setting it to a
349 source that {tt measures} is aware of will force the imaging to
350 realign (shift in SD imaging or phase rotation in interferometry
351 imaging) the data so that the source appears fixed in the
352 image. Obviously in doing so the background sources will be
353 blurred. The coordinate system used to fix the source on is the one where
354 the source is at the first time observed in the selected data.
355 """
356 return self._swigobj.defineimage(nx, ny, cellx, celly, stokes, phasecenter, mode, nchan, start, step, spw, restfreq, outframe, veltype, facets, movingsource, distance, projection)
358 def done(self):
359 """This is used to totally stop the {tt imager} process. It is a good idea
360 to conserve memory use on your machine by stopping the process once
361 you no longer need it.
362 """
363 return self._swigobj.done()
365 def drawmask(self, image='', mask='', niter=int(0), npercycle=int(0), threshold='0 mJy'):
366 """A mask image is an image with the same shape as the other images but
367 with values between 0.0 and 1.0 as a pixel value. Mask images are used in
368 imager to control the region selected in a deconvolution.
370 drawmask is used to interactively draw regions over a template image which you want to allow deconvolution to occur.
371 """
372 return self._swigobj.drawmask(image, mask, niter, npercycle, threshold)
374 def exprmask(self, mask='', expr=float(1.0)):
375 """A mask image is an image with the same shape as the other images but
376 with values between 0.0 and 1.0 as a pixel value. Mask images are used in
377 imager to control the region selected in a deconvolution.
379 In the Clark CLEAN, the mask image can usefully have any value between
380 0.0 and 1.0. Intermediate value discourage but do not rule out
381 selection of clean components in that region. This is accomplished by
382 multiplying the residual image by the mask prior to entering the minor
383 cycle. Note that if you do use a mask for the Clark or Hogbom Clean,
384 it must cover only a quarter of the image. boxmask does not enforce
385 this requirement.
387 This function allows Lattice Express Language (LEL) expressions to
388 be used in defining a mask. See the documentation on
389 imagecalc for more details.
390 """
391 return self._swigobj.exprmask(mask, expr)
393 def feather(self, image='', highres='', lowres='', lowpsf='', effdishdiam=float(-1.0), lowpassfiltersd=False):
394 """Basically the "imerg" algorithm of AIPS and SDE, or the "feather"
395 algorithm of MIRIAD, we regrid the total power (or low resolution)
396 image onto the interferometer (or high resolution) image, Fourier
397 transform both the interferometer and single dish images, down weight
398 the Fourier transform of the interferometer image by 1.0 - FT(low res psf),
399 add the weighted interferometer Fourier plane to the single dish Fourier
400 plane, and transform back into the image plane.
402 The tapering is by the transform of a point spread function. If lowpsf
403 is specified, that image is used, otherwise the appropriate telescope
404 beam is used. The point spread function for a single dish image may be
405 calculated using makeimage.
407 {tt Advice:} Note that if you are feathering large images, you'd be advised to have
408 the number of pixels along the X and Y axes to be composite numbers
409 and definitely not prime numbers. In general FFTs work much faster on even
410 and composite numbers. You may use subimage function of image
411 tool to trim the number of pixels to something desirable.
412 """
413 return self._swigobj.feather(image, highres, lowres, lowpsf, effdishdiam, lowpassfiltersd)
415 def filter(self, type='gaussian', bmaj=[ ], bmin=[ ], bpa=[ ]):
416 """Apply visibility tapering to emphasize certain scale structures. The
417 imaging tapers are applied to a Table column called IMAGING_WEIGHT,
418 which may be plotted using
419 tb and pl.
420 plotweights.
421 In addition, this column
422 may be accessed directly using either the table
423 or ms modules. Note that the taper is multiplicative and
424 so the weights must be calculated first using
425 weight. The points are not flagged!
427 Note that the scale size to be emphasized is given in the image plane
428 as the parameters of the corresponding Gaussian. Note also use of this
429 function provides an optimum detection for the given scale size, which
430 is not the same as requiring that the resulting dirty beam have the
431 specified Gaussian fit. The resultant fitted beam size will {em very
432 roughly} be the quadratic sum of the original beam and the specified
433 beam. If you wish to obtain a specified beam, then the best approach
434 is to perform this calculation and check the value obtained using
435 imager.fitpsf.
436 """
437 return self._swigobj.filter(type, bmaj, bmin, bpa)
439 def fitpsf(self, psf):
440 """This fits an elliptical Gaussian to the point spread function
441 and returns the fitted beam parameters. If psf image is not specified
442 then a psf is made and used. The values for the beam fit
443 are saved internally and used whenever needed (for example in the functions restore or smooth) until invalidated. The values
444 are invalidated by selectvis, defineimage or any tool function that changes
445 the weights. Use the function summary to check if there is a valid fitted psf stored internally.
447 """
448 return self._swigobj.fitpsf(psf)
450 def fixvis(self, fields=[ int(-1) ], phasedirs=[ ], refcode='', distances=[ float(0.0) ], datacolumn='all'):
451 """Corrects UVW coordinates and optionally the visibilities for various
452 effects that can be calculated without fitting a model to the data.
454 The effects include:
455 begin{itemize}
456 item changing the phase tracking center(s),
457 item correcting for differential aberration, (Not yet implemented)
458 item changing the equinox (i.e. B1950_VLA to J2000 or APP, etc.) of the UVW coordinates,
459 item changing the projection, as in (-)NCP to SIN. (Not yet implemented),
460 item refocusing.
461 end{itemize}
463 """
464 return self._swigobj.fixvis(fields, phasedirs, refcode, distances, datacolumn)
466 def ft(self, model=[ ], complist='', incremental=False, phasecentertime=float(-1.0)):
467 """Fourier transform the specified model (and optionally componentlist)
468 and insert into the MODEL_DATA column. The current contents of
469 the MODEL_DATA column are replaced unless incremental is set to
470 T (in which case the results are added to the column).
471 phasecentertime is optional useful for field which is have time varying phasecenters (polynomials or ephemerides phasecenters). The default is to calculate the phasecenter at each time in the data but the time provided here can be used to calculate phasecenters.
472 If the function setvp is run prior to running ft with a componentlist, then the spectral variation of each component in the componentlist will include the multiplicative term of the beam value for each channel frequency. So a flat spectrum component will show the frequency variation of the beam in the predicted visibilities..
473 """
474 return self._swigobj.ft(model, complist, incremental, phasecentertime)
476 def getweightgrid(self, type='imaging', wgtimages=[ ]):
477 """This is a utility function when running multi imager processes in parallel on subsection of an ms/data independently
478 One would wish to weight the dirty image before averaging or set the imaging weight density (when using unform or
479 Brigg's style weighting) to account for all the data being used. This is {bf NOT} for the general user but for people who
480 are parallelizing at the scripting level.
482 {bf imaging}: will return a the weight griddensity
484 {bf ftweight}: will put the FT-machine weight images in the names given in wgtimage parameters..these may be needed to average residual images from different processes running seperately on different section of the data.
485 """
486 return self._swigobj.getweightgrid(type, wgtimages)
488 def linearmosaic(self, images=[ ], mosaic='', fluxscale='', sensitivity='', fieldids=[ int(0) ], usedefaultvp=True, vptable=''):
489 """Make a linear mosaic of several images.
490 Currently, the pointing center is not specified in the image, so
491 we specify the pointing center in terms of the row numbers of the FIELD subtable.
492 """
493 return self._swigobj.linearmosaic(images, mosaic, fluxscale, sensitivity, fieldids, usedefaultvp, vptable)
495 def make(self, image=''):
496 """Make an empty image using the current image parameters. Often this is
497 unnecessary, but you will typically need to use this if you wish to
498 deconvolve a set of images. The steps are to make the empty images
499 that you require to be deconvolved, and then pass them into clean as a
500 vector of strings.
501 """
502 return self._swigobj.make(image)
504 def predictcomp(self, objname='', standard='', epoch=[ ], freqs=[ float(1.0e11) ], pfx='predictcomp'):
505 """Make a component list for an object recognized by standard, one of setjy's
506 flux density standards.
507 """
508 return self._swigobj.predictcomp(objname, standard, epoch, freqs, pfx)
510 def makeimage(self, type='observed', image='', compleximage='', verbose=True):
511 """This tool function actually does gridding (and Fourier inversion if
512 needed) of visibility data to make an image. It allows calculation of
513 various types of image:
514 begin{description}
515 item[observed] Make the dirty image from the DATA column ({em default})
516 item[model] Make the dirty image from the MODEL_DATA column
517 item[corrected] Make the dirty image from the CORRECTED_DATA column
518 item[residual] Make the dirty image from the difference of the
519 CORRECTED_DATA and MODEL_DATA columns
520 item[psf] Make the point spread function
521 item[singledish] Make a single dish image
522 item[coverage] Make a single dish coverage image
523 item[holography] Make a complex holography image
524 item[pb] Make the primary beam as defined by setvp
525 end{description}
527 Note the full {tt imager} equation is not used and so, for example, the
528 primary beam correction is not performed. Use
529 restore to get a residual image
530 using the full {tt imager} equation where primary beam correction is
531 performed.
533 A position shift can be applied when specifying the image parameters
534 with defineimage. If a shift is specified then
535 the uvw coordinates are reprojected prior to gridding, and a phase
536 rotation is applied. If the image is a PSF then no phase shift is
537 applied but the uvw are recomputed. To see the effects of the uvw
538 reprojected, you can use the
539 plotuv function.
541 If desired, the full complex image (before conversion to stokes
542 I,Q,U,V) may be retained. Note that the image
543 tool cannot load a complex image directly. Instead, use the
544 imagecalc constructor
545 to take {em e.g.} the real and imaginary parts of the image.
547 For making single dish and holography images, the data are convolved onto the
548 grid using a one of a number of options:
549 begin{description}
550 item[gridfunction='SF'] Circularly symmetric prolate spheroidal wavefunction.
551 This is always the same function in pixels. To get this to match to
552 the antenna primary beam, the optimum cellsize to use in constructing
553 the image is the antenna primary beam half-width-half-maximum times
554 1.20192.
555 item[gridfunction='BOX'] Nearest neighbor gridding.
556 item[gridfunction='PB'] The telescope primary beam is used as the
557 convolution function. This function is the same in arcseconds,
558 independent of the cellsize. This choice is optimum in the least
559 squares sense. To override the default choice of telescope primary beam
560 for a given telescope, use the function
561 setvp. Usually the default will be acceptable.
562 end{description}
564 To make a reasonable approximation to the sky, one should divide
565 the type='singledish' image by the type='coverage' image, thresholding
566 at some level. For example:
568 begin{verbatim}
570 ia.open('scanweight');
571 ia.statistics(s);
572 threshold = s.max / 10.0;
573 #
574 ia.imagecalc('sdimage',
575 pixels=spaste('scanimage[scanweight>', threshold,
576 ']/scanweight[scanweight>', threshold, ']'))
577 ###ia.view(raster=True, axislabels=True);
578 end{verbatim}
579 """
580 return self._swigobj.makeimage(type, image, compleximage, verbose)
582 def makemodelfromsd(self, sdimage='', modelimage='', sdpsf='', maskimage=''):
583 """This functions use an image from a single dish and make a model
584 (clean component) image out of it. This allows one to use this as the
585 starting model in a deconvoltion function e.g
586 clean or mem
587 This provides an alternative to
588 feather.
589 The difference between the two is that in {tt feather} the
590 interferometer image is deconvolved first and the single dish image is
591 put in at the end. Whereas if one starts with a model from the single
592 dish image it will give a different starting point for the deconvolving
593 algorithm to interpolate the missing short baseline.
595 The function setsdoptions may be used to set
596 a factor by which to scale the SD image, if necessary.
598 The {tt sdpsf} parameter (optional) should be used if an external PSF image of the
599 single dish is needed to calculate the beam parameters of the primary
600 beam of the dish. This is usually needed if the dish image is from a
601 non standard telescope or the beam is not in the {tt CASA} system.
603 The {tt mask} is a mask image that may be needed to be used for
604 clean. This is usually the case when the dish image does not fully
605 cover the field defined by defineimage.
606 """
607 return self._swigobj.makemodelfromsd(sdimage, modelimage, sdpsf, maskimage)
609 def mask(self, image='', mask='', threshold=[ ]):
610 """A mask image is an image with the same shape as the other images but
611 with values between 0.0 and 1.0 as a pixel value. Mask images are used
612 in {tt imager} to control the region selected in a deconvolution.
613 One makes a mask image by clipping the I part of the restored image
614 (this function) or via the boxmask,
615 regionmask, and
616 exprmask functions. In this
617 function, all points greater than the threshold are set to unity. The
618 mask is the same in I,Q,U, and V. Note that
619 exprmask is the most powerful
620 method for making mask images.
622 In the Clark CLEAN, the mask image can usefully have any value between
623 0.0 and 1.0. Intermediate value discourage but do not rule out
624 selection of clean components in that region. This is accomplished by
625 multiplying the residual image by the mask prior to entering the minor
626 cycle.
628 Note that if you do use a mask for the Clark or Hogbom Clean, it must
629 cover only a quarter of the image. It is particularly important to
630 check this when creating an image using a threshold. If it extends
631 further, the easiest fix is to use
632 getchunk and
633 getchunk to set parts of it to zero.
634 """
635 return self._swigobj.mask(image, mask, threshold)
637 def mem(self, algorithm='entropy', niter=int(20), sigma=[ ], targetflux=[ ], constrainflux=False, displayprogress=False, model=[ ], keepfixed=[ bool(False) ], complist='', prior=[ ], mask=[ ], image=[ ], residual=[ ]):
638 """Makes a mem image using either the Cornwell-Evans maximum entropy or
639 maximum emptiness algorithms, using the single field or multi-field
640 contexts. The maximum entropy algorithm is the default. The mem is performed
641 on the residual image calculated from the visibility data currently
642 selected. Hence the first step performed in mem is to transform the
643 current model or models (optionally including a componentlist) to fill
644 in the MODEL_DATA column, and then inverse transform the residual
645 visibilities to get a residual image. This residual image is then
646 deconvolved using the corresponding point spread function. This means that
647 the initial model is used as the starting point for the
648 deconvolution. Thus if you want to restart a mem, simply set the
649 model to the model that was previously produced by clean.
651 Mask images are used to constrain the region that is to be
652 deconvolved. To make mask images, use either
653 boxmask (to define a mask via the
654 corner locations blc and trc) or mask (to
655 define a mask via thresholding an existing image). The default mask is
656 the inner quarter of the image.
658 The MEM deconvolution only operates on one Stokes parameter at a time.
659 Joint MEM deconvolution for multiple Stokes parameters will be
660 implemented in the future.
662 Some reference regarding MEM :
663 Cornwell and Evans,
664 Astronomy and Astrophysics (ISSN 0004-6361), vol. 143, no. 1, Feb. 1985,
665 p. 77-83.
667 Narayan and Nityananda,
668 Annual review of astronomy and astrophysics. Volume 24 (A87-26730
669 10-90). Palo Alto, CA, Annual Reviews, Inc., 1986, p. 127-170.
671 The mem algorithms possible are:
672 begin{description}
673 item[Cornwell-Evans Maximum Entropy (entropy)] The classic "vm" or "vtess"
674 deconvolution algorithm.
675 item[Cornwell-Evans Maximum Emptiness (emptiness)] The historic, but
676 largely undocumented, modification to the Cornwell-Evans algorithm
677 which seeks a model image which is consistent with the data and
678 simultaneously minimizes the number of pixels with no emission
679 (meaning "with pixel values below the noise level").
680 item[Multi-field Maximum Entropy (mfentropy)] Deconvolution is split
681 into minor and major cycles. For each field, the MEM analog of a Clark
682 Clean minor cycle is performed. In the major cycle, the emission thus
683 modelled is subtracted either from the original visibilities (for
684 multiple fields) or using a convolution (for only one field). The
685 latter is much faster.
686 item[Multi-field Maximum Emptiness (mfemptiness)] Just like {tt mfentropy},
687 but with emptiness.
688 end{description}
690 The multi-field mem ({tt mfentropy} or {tt mfemptiness}) should be
691 used if either of two conditions hold:
692 begin{enumerate}
693 item Multiple fields are to be deconvolved simultaneously {bf OR}
694 item Primary beam correction is enabled. In this case, a
695 mosaiced mem is performed.
696 end{enumerate}
698 Note that for the single pointing algorithms, only a quarter of the
699 image may be deconvolved. If no mask is set, then the deconvolved
700 region defaults to the inner quarter. If a mask larger than a quarter
701 of the image is set, then only the quarter starting at the bottom left
702 corner is used. However, for the multi-field imaging, the entire
703 field may be imaged because the major cycles either do an exact
704 subtraction from the visibilities or because PSF extent is more than
705 twice the extent of the primary beam support.
707 Before {tt mem} can be run, you must run {tt selectvis} and {tt defineimage}.
708 Before {tt mem} can be run with a multi-field algorithm, you should run
709 {tt setvp}. You may want to run {tt setmfcontrol} before running {tt mem}
710 with a multi-field algorithm, though the default control values
711 may be acceptable.
712 """
713 return self._swigobj.mem(algorithm, niter, sigma, targetflux, constrainflux, displayprogress, model, keepfixed, complist, prior, mask, image, residual)
715 def nnls(self, model=[ ], keepfixed=[ bool(False) ], complist='', niter=int(0), tolerance=float(1e-06), fluxmask=[ ], datamask=[ ], image=[ ], residual=[ ]):
716 """Solve for the model brightness using the Briggs' Non-Negative Least
717 Squares algorithm. Since NNLS works only on the $I$ image, the $I$
718 pixels in the current image is set to zero where the fluxmask is $> 0.0$,
719 then NNLS is used to estimate the $I$-pixels for that region.
720 The deconvolution is performed on the residual image calculated from
721 the visibility data currently selected. Hence the first step performed
722 in clean is to transform the current model to fill in the MODEL_DATA
723 column, and then inverse transform the residual visibilities to get a
724 residual image. This residual image is then deconvolved using the
725 corresponding point spread function.
727 Some other points to remember are that rather than explicit boxes,
728 mask images are used to constrain the region that is to be
729 deconvolved. For NNLS, there are two masks, the fluxmask specifying
730 the region within which flux is allowed, and the datamask specifying
731 the region of the dirty image to be used as constraints. Typically the
732 datamask will be somewhat larger than the fluxmask. On a large
733 machine, a practical limit to both will be about 5000-6000
734 pixels. Hence NNLS is only useful for compact tools. (For more
735 details, see the htmladdnormallink{Briggs thesis}{briggsURL}). To
736 make mask images, use either boxmask (to
737 define a mask via the corner locations blc and trc) or
738 mask (to define a mask via
739 thresholding an existing image).
741 On the canonical aipspp machine with 64MBytes of physical memory,
742 you should try to keep the product of the pixels in the fluxmask
743 and the datamask below about 5-10 million. Otherwise the
744 solution phase will swap badly.
745 """
746 return self._swigobj.nnls(model, keepfixed, complist, niter, tolerance, fluxmask, datamask, image, residual)
748 def open(self, thems='', compress=False, usescratch=False):
749 """Close the current MeasurementSet and open a new MeasurementSet
750 instead. The current state of {tt imager} is retained, except for
751 the data selection.
752 """
753 return self._swigobj.open(thems, compress, usescratch)
755 def pb(self, inimage='', outimage='', incomps='', outcomps='', operation='apply', pointingcenter=[ ], parangle=[ ], pborvp='pb'):
756 """Multiply ({tt operation='apply'}) or divide ({tt operation='correct'})
757 by the primary beam function. The primary beam can be applied to images and/or
758 Componentlists.
760 If {tt pointingcenter==false} then you must specify {tt inimage}
761 and the pointing center is taken from its reference direction.
762 Otherwise, {tt pointingcenter} must be a Direction measure.
763 It cannot take on the value {tt True}.
765 The applied primary beam function is deterimed as follows. If you used
766 function Imager.setvp to set an external
767 voltage pattern table, then this is where the applied primary beam will
768 come from (regardless of whether you set {tt inimage} or not). If you
769 did not run this function, then you must supply argument {tt inimage}.
770 The telescope name embedded in its Coordinate System will be used to
771 determine the primary beam function.
772 """
773 return self._swigobj.pb(inimage, outimage, incomps, outcomps, operation, pointingcenter, parangle, pborvp)
775 def plotsummary(self):
776 """Performs a simple plot of the field and spectral window IDs
777 versus time (after sorting).
778 """
779 return self._swigobj.plotsummary()
781 def plotuv(self, rotate=False):
782 """Performs a simple plot of the uv coverage of all selected data.
784 Optionally, plotuv will rotate the uvw coordinates to the
785 specified phase center (set via defineimage).
786 """
787 return self._swigobj.plotuv(rotate)
789 def plotvis(self, type='all', increment=int(1)):
790 """Performs a simple plot of the visibility amplitudes of all selected data.
791 """
792 return self._swigobj.plotvis(type, increment)
794 def plotweights(self, gridded=False, increment=int(1)):
795 """Performs a plot of the visibility weights of all selected data (stored in
796 the IMAGING_WEIGHT column of the MeasurementSet).
797 The plot can be of the gridded weights (type='gridded') or
798 ungridded.
801 """
802 return self._swigobj.plotweights(gridded, increment)
804 def regionmask(self, mask='', region={ }, boxes=[ ], circles=[ ], value=float(1.0)):
805 """A mask image is an image with the same shape as the other images but
806 with values between 0.0 and 1.0 as a pixel value. Mask images are used in
807 imager to control the region selected in a deconvolution.
809 In the Clark CLEAN, the mask image can usefully have any value between
810 0.0 and 1.0. Intermediate value is discouraged but do not rule out
811 selection of clean components in that region. This is accomplished by
812 multiplying the residual image by the mask prior to entering the minor
813 cycle. Note that if you do use a mask for the Clark or Hogbom Clean,
814 it must cover only a quarter of the image. {tt regionmask} does not enforce
815 this requirement.
817 The function regionmask also allows multiple regions to be used. A record of the regions can be made as in the example below.
819 Regions can be made in many different ways using the
820 regionmanager functions. An example
821 using wbox function is given
822 below. The default regionmanager tool 'rg' can be used for cases the user want to have flexibility in manipulating regions. The {tt region} parameter takes a record that comes from the regionmanager output.
823 The parameter boxes allow the user to sent in a list of 4 elements numbers representing blc's and trc's
825 If both the parameters, {tt regions} and {tt boxes} are used the a union is done with the two sets of region thus defined.
830 """
831 return self._swigobj.regionmask(mask, region, boxes, circles, value)
833 def regiontoimagemask(self, mask='', region={ }, boxes=[ ], circles=[ ], value=float(1.0)):
834 """This function is very similar to regionmask function
835 except that the mask image has to be existant already and this is an
836 independent helper function (i.e does not care about the state of the imager tool... e.g does not need imager to have an
837 attached ms).
842 """
843 return self._swigobj.regiontoimagemask(mask, region, boxes, circles, value)
845 def residual(self, model=[ ], complist='', image=[ ]):
846 """Calculate the residuals corresponding to the model and
847 componentlist. {em Note that the model visibilities are updated}.
848 """
849 return self._swigobj.residual(model, complist, image)
851 def restore(self, model=[ ], complist='', image=[ ], residual=[ ]):
852 """Restore the residuals to a smoothed version of the model. The model
853 images are convolved with the specified Gaussian beam and then the
854 residual images are added. {em Note that the model visibilities are
855 updated and thus reflect the model and componentlist that was
856 used.}. Use setbeam to set the beam
857 parameters.
858 """
859 return self._swigobj.restore(model, complist, image, residual)
861 def updateresidual(self, model=[ ], complist='', image=[ ], residual=[ ]):
862 """This function is for efficiency and speed purpose only. Same as restore
863 It is to be used after you have used clean or mem ...but you wish to tweak the model image, say by clipping unwanted components and it will avoid unnecessary recalculating of psf but will do a proper prediction of the new model visibilities and recalculate residual and restored images.
864 """
865 return self._swigobj.updateresidual(model, complist, image, residual)
867 def sensitivity(self):
868 """NB: The implementation in this function will be removed for CASA v4.5.
869 We now recommend that the im.apparentsens() function be used instead
870 of this one, especially if their weights are initialized and
871 calibrated.
873 Calculate the point source sensitivity for the selected data, both
874 absolutely and relatively (to that for natural weighting).
876 To do the calculation, we use the imaging weights (in the
877 column called IMAGING_WEIGHT) as calculated from the WEIGHT column,
878 and an estimate of the effective net bandwidth and integration time.
879 The calculation therefore includes all the effects
880 of weight and
881 filter.
883 The output is an array with mixed elements. Counting from zero, the
884 second element (out[1]) is the net sensitivity, third element is the
885 ratio of the reduction in sensitivity due to the chosen weighting
886 scheme. This ratio is 1.0 for Natural weight and greater than one for
887 all other weighting schemes. (NOTE: Further testing is required of
888 this value and hence this is kept separate for now).
890 The sensitivity calculations require Tsys and collecting area of
891 the antenna. These quantities are not known from the MS. The
892 sensitivity is therefore returned in units of Jy m^2/K. Multiplying the
893 second elements with the ration of the Tsys and effective antenna
894 collecting area will give the sensitivity in Jy/beam units.
896 The fourth elements of the return value is a record with the following
897 keys: 'nbaselines', 'effectiveintegration', 'effectivebandwidth',
898 'sumwt' and 'spwid'. These can be used to get the number of baselines
899 used, effective integration time (in sec), the effective bandwidth (in
900 Hz), the sum of weights and the absolute spectral window IDs used.
901 """
902 return self._swigobj.sensitivity()
904 def apparentsens(self):
905 """This function calculates the point source sensitivity for the data
906 selected by im.selectvis(...), and according to the imaging weighting
907 parameters specified in im.weight(...) and im.defineimage(...). The
908 calculation is performed solely using the weight information stored in
909 the MS WEIGHT column (WEIGHT_SPECTRUM tbd), and as adjusted by the net
910 imaging weighting function (natural, uniform, robust, taper, etc.).
911 Therefore, it is assumed that the MS WEIGHTs have been properly
912 initialized and calibrated along with the visibility data. As long as
913 the WEIGHTs are in the inverse square units of the visibilities (i.e.,
914 inverse variance weights), the calculation should yield the real
915 theoretical imaging sensitivity for data at any stage of the
916 calibration (though data at early and intermediate stages of
917 calibration may not be sufficiently coherent for imaging at high--or
918 even modest--fidelity).
920 Two values are reported in the logger and returned (see example
921 below). First, the apparent sensitivity (in the units implied by the
922 WEIGHTs' units), for the specified imaging weighting scheme. Second,
923 a unitless factor describing the ratio of the apparent sensitivity to
924 that obtained with pure 'natural' weighting (the nominal peak
925 sensitivity). When 'natural' weighting is selected, this ratio factor
926 will be 1.0; all other weighting choices will yield an apparent
927 sensitivity ratio greater than 1.0.
929 Currently, this function reports only the continuum sensitivity for
930 the selected data, and in particular, for the aggregate bandwidth
931 indicated by the spectral window selection. The calculation further
932 assumes that the visibility samples are each entirely independent
933 (i.e., no redundant samples such as would occur for overlapping
934 spectral windows).
936 A future version of this function will support reporting a sensitivity
937 spectrum for the spectral line case (including support for
938 WEIGHT_SPECTRUM). For now, spectral line sensitivity may be
939 reasonably estimated by dividing the reported sensitivity by the
940 square root of the fractional bandwidth of a single image channel, or
941 by selecting a bandwidth matching the width of a single image channel.
942 """
943 return self._swigobj.apparentsens()
945 def setbeam(self, bmaj=[ ], bmin=[ ], bpa=[ ]):
946 """This sets the clean beam that will be used in all restoration
947 operations.
948 """
949 return self._swigobj.setbeam(bmaj, bmin, bpa)
951 def selectvis(self, vis='', nchan=[ int(-1) ], start=[ int(0) ], step=[ int(1) ], spw=[ ], field=[ ], baseline=[ ], time=[ ], scan=[ ], intent='', observation=[ ], uvrange=[ ], taql='', usescratch=False, datainmemory=False, writeaccess=True):
952 """This setup tool function selects which data are to be used
953 subsequently. After invocation of selectvis, only the selected
954 data are operated on. Thus, for example, in imaging, only the selected
955 data are gridded into an image, and in plotting, only the
956 selected data are plotted.
958 Data can be selected by field and spectral window ids. Note that
959 all data thus selected are passed to imaging, and may or
960 may not be imaged, depending on how the image was constructed
961 using defineimage. For example,
962 in mosaicing, use fieldid in defineimage to control what pointing
963 is used to define the field center, and use fieldid in selectvis
964 to control what pointings are used in the imaging.
966 For spectral processing, it is possible to make cubes out
967 multi-spectral window selections but the selection and combination can
968 be a bit confusing (any hint at how to make it clearer is welcome).
970 If the default values are not used, then data to be used can be selected channel wise. The
972 begin{description}
973 item[nchan] is the number of data channels selected. It
974 defaults to -1 (interpreted as all channels).
975 item[start] is the first channel from input dataset that is to be used.
976 It defaults to 0 (i.e. first channel).
977 item[step] gives the increment between selected input channels. It defaults to 1 channel. A value of {tt n} means that {tt n-1} data channels will not not be used.
978 end{description}
982 By choosing the parameters for selectvis and defineimage correctly,
983 one may obtain various mappings of visibility channels to image
984 channels. For example, to average 512 visibility channels into 64
985 image channels (producing image channels consisting of 8
986 visibility channels):
989 im.defineimage(mode='channel', spw=0, nchan=64, start=1, step=8);
990 im.selectvis(spw=0, nchan=512, start=1, step=1)
991 im.clean(.....);
994 This averages the spectral channels during the gridding process. If
995 one wanted to only include every 8th channel in the
996 deconvolution, one would do:
999 im.selectvis(nchan=64, start=1, step=8)
1000 im.defineimage(mode='channel', nchan=64, start=1, step=8);
1001 im.clean(....);
1004 For velocity and opticalvelocity modes, the mstart and mstep
1005 are the start and step velocities as strings.
1008 im.defineimage(mode='velocity', nchan=64, start='20 km/s', step='-100m/s');
1009 im.selectvis(spwid=[-1]); ###selecting all data spectral windows
1010 im.clean(...);
1013 If the image and data selections differ, then averaging is done during
1014 the gridding and degridding process in the image deconvolution.
1017 im.defineimage(mode='channel', nchan=64, start=1, step=8);
1018 im.selectvis(nchan=512, start=1, step=1)
1019 im.clean()
1022 Note: The channels numbers used in {tt defineimage}
1023 and {tt selectvis} refers to the same channel. So if a channel is not
1024 selected in {tt selectvis} but is selected in {tt defineimage}, then
1025 blank channels image are made. The example below will result in the
1026 having the first 6 (0-5) channels in the image to be blank.
1029 im.selectvis(nchan=50, start=6, step=1) #selected chan 6-55
1030 im.defineimage(mode='channel', nchan=50, start=0, step=1);
1032 # will try to image channel 1-50. But as previously only channel 6-55
1033 # was selected only channel 6-50 will have data; images of channels
1034 # 1-5 are blank
1035 im.clean(....)
1038 For multi-spectral window cube imaging the selection of the data can
1039 be done as follows
1042 im.selectvis(nchan=[50,60], start=[0,0], step=[1,1],
1043 spw=[0,1])
1044 im.defineimage(mode='channel', nchan=110, start=0, step=1, spw=[0,1]);
1048 The above means that you would make a data selection of 50 channels
1049 (starting from 0 steping 1) from the first spectral window and 60
1050 channels (starting from 1 steping 1). The defineimage defines the image
1051 to be a cube of 110 channels. The caveat is the step size in the
1052 frequency direction is the step size of the first spectral window. If
1053 the step size of channels of the two spectral windows are different
1054 then one is better off defining the image cube in velocities (e.g. as below).
1058 im.selectvis(nchan=[50,60], start=[0,0], step=[1,1],
1059 spw=[1,2])
1060 im.defineimage(mode='velocity', nchan=200, mstart='20km/s',
1061 mstep='-100m/s');
1063 """
1064 return self._swigobj.selectvis(vis, nchan, start, step, spw, field, baseline, time, scan, intent, observation, uvrange, taql, usescratch, datainmemory, writeaccess)
1066 def setjy(self, field=[ ], spw=[ ], modimage='', fluxdensity=[ float(0.0),float(0.0),float(0.0),float(0.0) ], standard='SOURCE', scalebychan=False, spix=[ float(0.0) ], reffreq=[ ], polindex=[ float(0.0) ], polangle=[ float(0.0) ], rotmeas=float(0.0), time='', scan='', intent='', observation='', interpolation='nearest'):
1067 """Compute the model visibility for a specified source flux density, and
1068 insert into the MODEL_DATA column. The source flux density for
1069 a set of standard flux density reference sources may optionally
1070 be pre-computed, by setting the input flux density to -1 (the default).
1071 At present, these include 3C286, 3C48, 3C147, 3C138, and 1934-638.
1072 In this case, if the source is not in this set, an unpolarized
1073 flux density of 1 Jy will be assumed. Users may also specify
1074 {tt standard='SOURCE'} to use the model(s) in the SOURCE_MODEL column of the
1075 SOURCE subtable.
1077 Users may also specify a model image that will be scaled to the
1078 specified total flux density (or that computed for reference sources).
1079 When a model image is specified, setjy will only permit processing
1080 one field, and will currently only process Stokes I.
1081 """
1082 return self._swigobj.setjy(field, spw, modimage, fluxdensity, standard, scalebychan, spix, reffreq, polindex, polangle, rotmeas, time, scan, intent, observation, interpolation)
1084 def ssoflux(self):
1085 """*This was an experimental clone of setjy while flux calibration with Solar
1086 System objects was being tested. It has been merged back into setjy.*
1087 """
1088 return self._swigobj.ssoflux()
1090 def setmfcontrol(self, cyclefactor=float(1.5), cyclespeedup=float(-1), cyclemaxpsffraction=float(0.8), stoplargenegatives=int(2), stoppointmode=int(-1), minpb=float(0.1), scaletype='NONE', constpb=float(0.4), fluxscale=[ ], flatnoise=True):
1091 """Control parameters for mosaicing or wide-field imaging which are not
1092 required in single field deconvolution are set here to streamline the
1093 user interface. As multifield and widefield imaging is accomplished
1094 by deconvolution in cycles, many of these parameters control how the
1095 deconvolution cycles are ended.
1097 begin{description}
1098 item cyclefactor: this parameter helps in lowering or increasing the
1099 threshold at which the deconvolution cycle will stop and degrid and
1100 subtract from the visibilities. For very bad PSFs you may want to
1101 reconcile with the visibilties often, thus a larger number is
1102 required here...(4 to 5). For very well behaved data you may want to
1103 deconvolve deep before reconciling: a lower number is used (1.5 to 2.0).
1104 item cyclespeedup: this is used if the PSF is not well behaved and
1105 you want clean to raise by 2 the threshold if it has not reached the
1106 threshold in this number of iteration
1107 item cyclemaxpsffraction: similar to cyclefactor, but this is an
1108 explicit fraction of the PSF peak. The final threshold is computed
1109 using min( cyclemaxpsffraction, cyclefactor * maxPSFsidelobe).
1110 Valid values are between 0.0 and 1.0.
1111 item stoplargenegatives: This parameter is exclusively for when using
1112 multiscale clean. This is used to stop the component
1113 search when the largest scale has found this number of negative
1114 components. -1 here means that continue component search even if the
1115 largest component is negative.
1116 item stoppointmode: Again exclusively for when using multiscale
1117 clean. The clean will stop if the smallest scale receives this
1118 number of consecutive components.
1119 item minpb: This is to defined up to what level the voltage pattern
1120 is going to applied when using
1121 setvp. The default is 0.1 of the
1122 primary beam or the voltage pattern defined for the antenna.
1123 item scaletype: This parameter cab be NONE or SAULT. If NONE the
1124 image is not scaled, if SAULT is used the image is weighted so that
1125 the noise is kept uniform across the image. The next two parameters
1126 defines how the SAULT weighting is limited. Obviously then the flux
1127 scale is not uniform across the image. To get the right flux
1128 multiply the image with the fluxscale image.
1129 item constpb: this parameter defines up to what amplitude of the
1130 Primary beam the noise floor is kept uniform, when using SAULT as scaletype.
1131 item fluxscale: use this to give a filename to store the factor image
1132 to apply to the image to get the fluxscale right.
1133 item flatnoise: (default true) Set to false if you want clean components for mosaic to be searched in the residual image that is effectively multiplied by the $beam^2$. This means when the noise is determined after the antenna, searching in the optimum domain of $signal/(sigma^2)$. For meter wavelengths where noise is determined by the sky, it is no longer optimal.
1134 end{description}
1135 """
1136 return self._swigobj.setmfcontrol(cyclefactor, cyclespeedup, cyclemaxpsffraction, stoplargenegatives, stoppointmode, minpb, scaletype, constpb, fluxscale, flatnoise)
1138 def setoptions(self, ftmachine='ft', cache=int(-1), tile=int(16), gridfunction='SF', location=[ ], padding=float(1.0), freqinterp='nearest', wprojplanes=int(-1), epjtablename='', applypointingoffsets=False, dopbgriddingcorrections=True, cfcachedirname='', rotpastep=float(5.0), pastep=float(360.0), pblimit=float(0.05), imagetilevol=int(0), singleprecisiononly=False, numthreads=int(-1), psterm=True, aterm=True, mterm=True, wbawp=False, conjbeams=True):
1139 """This function is for setting different gridding and memory options
1141 begin{description}
1142 item[ftmachine] The options for ftmachine are:
1143 begin{description}
1144 item[ft] Standard interferometric gridding
1145 item[sd] Standard single dish gridding
1146 item[both] ft and sd as appropriate.
1147 item[wproject] option for using the wproject algorithm for wide-field
1148 imaging; when this option is used the parameter {tt wprojplanes}
1149 define the number of convolution functions to be used
1150 item[mosaic] option to use the gridder that uses the primary beam as
1151 the convolution function in gridding
1153 end{description}
1154 item[cache] The size of the cache used (in complex pixels) during the
1155 gridding process. The default is to use half the physical memory of
1156 the machine as specified by the aipsrc variable system.resources.memory.
1157 item[tile] The side of the tile (in complex pixels) during the
1158 gridding process.
1159 item[gridfunction] The gridding function used. Currently only
1160 Box-car ('BOX') and Prolate Spheriodal Wave Function ('SF')
1161 are supported. In the case of Single-Dish imaging the Primary Beam ('PB'),
1162 Gaussian ('GAUSS'), and Gaussian * Jinc ('GJINC') also can be used.
1163 item[location] For some unusual types of image, one needs to know the
1164 location to be used in calculating phase rotations. For example,
1165 one can specify images to be constructed in azel, in which
1166 case, an antenna position must be chosen. One can use functions of
1167 measures: either
1168 observatory to
1169 get the position of a named observatory ({em e.g.}
1170 me.observatory('ATCA')) or
1171 position to set
1172 the position ({em e.g.}me.position('wgs84','30deg','40deg','10m')).
1173 Although this information is available from the MeasurementSet, what
1174 location is ambiguous in some cases {em e.g.} VLBI.
1175 item[padding] When gridding and transforming, the array may be
1176 padded by this factor in the image plane. This reduces aliasing,
1177 especially in wide-field cleaning.
1178 item[usemodelcol] if this is false it tells imager to create and use the model
1179 visibility on the fly and in memory as far as possible...otherwise
1180 if it is True then imager will use the MODEL_DATA column to do this.
1181 item[wprojplanes] this parameter is is used only of {tt ftmachine}
1182 is set to {tt wproject}. This defines how many convolution functions
1183 is used in the Wprojection gridder (a -1 implies an automatic determination).
1184 end{description}
1185 """
1186 return self._swigobj.setoptions(ftmachine, cache, tile, gridfunction, location, padding, freqinterp, wprojplanes, epjtablename, applypointingoffsets, dopbgriddingcorrections, cfcachedirname, rotpastep, pastep, pblimit, imagetilevol, singleprecisiononly, numthreads, psterm, aterm, mterm, wbawp, conjbeams)
1188 def setscales(self, scalemethod='nscales', nscales=int(5), uservector=[ float(0.0),float(3.0),float(10.0) ]):
1189 """The multiscale clean algorithm cleans an image on a number of
1190 different scales, decomposing the image into Gaussians of these scale sizes.
1191 This function allows the user to set the number
1192 of scales used (using the nscales method), or to directly control the
1193 sizes of the scales in pixels (using the uservector method). When using the
1194 nscales method, the scales are calculated using the following formula:
1195 begin{equation}
1196 theta_{minor} 10.0 ^{(i- N_{scales}/2)/2.0}
1197 end{equation}
1198 where $theta_{min}$ is the fitted minor axis of the clean beam. The
1199 first value is zero.
1200 """
1201 return self._swigobj.setscales(scalemethod, nscales, uservector)
1203 def setsmallscalebias(self, inbias=float(0.6)):
1204 """
1205 """
1206 return self._swigobj.setsmallscalebias(inbias)
1208 def settaylorterms(self, ntaylorterms=int(2), reffreq=float(0.0)):
1209 """The multi-frequency clean algorithm cleans an image by approximating its spectra
1210 by a Taylor series expansion. This function allows the user to set the number of
1211 Taylor terms to be used. Options are 1,2,3.
1212 """
1213 return self._swigobj.settaylorterms(ntaylorterms, reffreq)
1215 def setsdoptions(self, scale=float(1.0), weight=float(1.0), convsupport=int(-1), pointingcolumntouse='DIRECTION', truncate=[ ], gwidth=[ ], jwidth=[ ], minweight=float(0.), clipminmax=False, enablecache=False, convertfirst='NEVER'):
1216 """Various less-often-used options for single dish processing can be set.
1218 begin{description}
1219 item[scale] The overall scale of the single dish data is multiplied by this
1220 factor.
1221 item[weight] The weight given to the single dish data in the imaging
1222 is multiplied by this factor.
1223 item[convsupport] This parameter can be used to change the support used in gridding single dish data in imaging. If 'PB' or 'pb' is used as the 'convtype' in
1224 setoptions this parameter is ignored as the support is defined by the primary beam. The deafult of -1 mans 1 as convsupport is used for 'box' convolution function and 3 is used for 'SF' convolution function.
1225 item[pointingcolumntouse] This parameter is NOT to be changed under normal circumstances. This is to be used by those who know what they are doing and want to try to use different columns in the POINTING table especially if they believe their dish direction is wrong. And if any of the {tt _OFFSET} columns is used do not expect to be able to use a different frame in the image setup in defineimage. Possible values are {tt DIRECTION, TARGET, ENCODER, POINTING_OFFSET, SOURCE_OFFSET}
1226 item[truncate] The truncation radius as a quantity or a float value. This parameter is effective only when 'GAUSS' or 'GJINC' is used as the 'convtype' in setoptions. You can use an unit 'pixel' to specify truncation radius as pixel value. If float value is set, or quantity without unit is set, its unit will be 'pixel'.
1227 item[gwidth] The width of the gaussian beam as a radius of half maximum. This parameter is effective only when 'GAUSS' or 'GJINC' is used as the 'convtype' in setoptions. You can use an unit 'pixel' to specify truncation radius as pixel value. If float value is set, or quantity without unit is set, its unit will be 'pixel'. Note that, when 'GJINC' is used as the 'convtype', gwidth doesn't directry specify width of the convolution function.
1228 item[jwidth] The witdh of the jinc beam as a parameter c, where jinc = J_1(pi*x/c)/(pi*x/c). This parameter is effective only when 'GJINC' is used as the 'convtype' in setoptions. You can use an unit 'pixel' to specify truncation radius as pixel value. If float value is set, or quantity without unit is set, its unit will be 'pixel'. Note that jwidth doesn't directly specify width of the convolution function.
1229 end{description}
1230 """
1231 return self._swigobj.setsdoptions(scale, weight, convsupport, pointingcolumntouse, truncate, gwidth, jwidth, minweight, clipminmax, enablecache, convertfirst)
1233 def setvp(self, dovp=False, usedefaultvp=True, vptable='', dosquint=False, parangleinc=[ ], skyposthreshold=[ ], telescope='', verbose=True):
1234 """Set the voltage pattern model (and hence, the primary beam) used for a
1235 telescope. There are currently two ways to set the voltage pattern: by using
1236 the extensive list of defaults which the system knows about, or by creating a
1237 voltage pattern description with the vpmanager. The default voltage patterns
1238 include both a high and a low frequency VP for the WSRT, a VP for each
1239 observing band at the AT, several VP's for the VLA, including the appropriate
1240 beam squint for each observing band, and Gaussian for the BIMA dishes. Due to
1241 temporary limitations in the internal structure of the visibility buffer, only
1242 one telescope's voltage pattern can be applied to a particular MeasurementSet.
1243 This will be corrected shortly.
1244 """
1245 return self._swigobj.setvp(dovp, usedefaultvp, vptable, dosquint, parangleinc, skyposthreshold, telescope, verbose)
1247 def setweightgrid(self, weight=[ ], type='imaging'):
1248 """This is a utility function when running multi imager processes in parallel on subsection of an ms/data independently
1249 One would wish to weight the dirty image before averaging or set the imaging weight density (when using unform or
1250 Brigg's style weighting) to account for all the data being used. This is {bf NOT} for the general user but for people who
1251 are parallelizing at the scripting level.
1252 """
1253 return self._swigobj.setweightgrid(weight, type)
1255 def smooth(self, model=[ ], image=[ ], usefit=True, bmaj=[ ], bmin=[ ], bpa=[ ], normalize=True):
1256 """The model images are convolved with the specified Gaussian beam. By
1257 default (normalize=T), the beam volume is normalized to unity so that
1258 the smoothing is flux preserving. The smoothing used in restoration is
1259 not normalized.
1260 """
1261 return self._swigobj.smooth(model, image, usefit, bmaj, bmin, bpa, normalize)
1263 def stop(self):
1264 """Stop the currently executing function as soon as possible. Note that
1265 it is not always possible to stop a function.
1266 """
1267 return self._swigobj.stop()
1269 def summary(self):
1270 """Writes a summary of the properties of the imager to the
1271 default logger. This includes:
1272 begin{itemize}
1273 item The name of the MeasurementSet (set in construction or via the
1274 open function.
1275 item The parameters of the image (set via defineimage)
1276 item The current beam (set by fitpsf
1277 or setbeam.
1278 item The selection of an ms (set via selectvis)
1279 item The general processing options (set via setoptions)
1280 end{itemize}
1281 """
1282 return self._swigobj.summary()
1284 def uvrange(self, uvmin=float(0.0), uvmax=float(0.0)):
1285 """Apply a uvrange so that only points within a given uvrange are selected for further usage. To be noted selectvis if used after uvrange will reset the selected range. So selectvis should be used prior to uvrange or can be used
1287 to reset it if one changes one's mind. The points are not flagged! Further point to be noted for spectral line data the uv distance is calculated using the mean of the wavelengths of the different spectral channels selected.
1288 """
1289 return self._swigobj.uvrange(uvmin, uvmax)
1291 def weight(self, type='natural', rmode='none', noise=[ ], robust=float(0.0), fieldofview=[ ], npixels=int(0), mosaic=False):
1292 """Apply visibility weighting to correct for the local density of
1293 sampling in the uv plane. The imaging weights are calculated on the fly
1294 when processing the data and can be viewed by
1295 plotweights.
1297 To correct for visibility sampling effects, natural, uniform, radial, and Briggs weighting are supported. These work as
1298 follows. Then:
1299 begin{description}
1300 item[natural]: minimizes the noise in the dirty image. The weight of
1301 the $i$-th sample is set to the inverse variance:
1302 begin{equation}
1303 w_i={1over{sigma_i^2}}
1304 end{equation}
1305 where $sigma_i$ is the noise of the $i$'th sample.
1306 item[radial]: approximately minimizes rms sidelobes for an east-west synthesis
1307 array. The weight of the $i$-th sample is multiplied
1308 by the radial distance from the center of the $u,v$ plane:
1309 begin{equation}
1310 w_i=w_i sqrt{u_i^2+v_i^2}
1311 end{equation}
1312 item[uniform]: For Briggs and uniform weighting, we first grid the inverse
1313 variance $w_i$ for all selected data onto a grid of size given by the
1314 argument npixels (default to nx) and u,v cell-size given by
1315 $2/$fieldofview where fieldofview is the specified field of view
1316 (defaults to the image field of view). This forms the gridded weights
1317 $W_k$. The weight of the $i$-th sample is then changed:
1318 begin{equation}
1319 w_i={w_iover{W_k}}
1320 end{equation}
1321 where $W_k$ is the gridded weight of the relevant cell.
1322 It may be shown that this minimizes rms sidelobes over
1323 the field of view. By changing the field of view, one may suppress
1324 the sidelobes over a region different (usually smaller) than the
1325 image size.
1326 item[briggs: rmode='norm']: The weights are changed:
1327 begin{equation}
1328 w_i={w_iover{1 + W_k f^2}}
1329 end{equation}
1330 where:
1331 begin{equation}
1332 f^2={{(5*10^{-R})^2}over{{sum_k W_k^2}over{sum_i w_i}}}
1333 end{equation}
1334 and $R$ is the robust parameter. The scaling of $R$ is such that
1335 $R=0$ gives a good tradeoff between resolution and sensitivity.
1336 $R$ takes value between -2.0 (close to uniform weighting) to 2.0
1337 (close to natural).
1338 item[briggs: rmode='abs']: The weights are changed:
1339 begin{equation}
1340 w_i={w_iover{W_k*R^2+2*sigma_R^2}}
1341 end{equation}
1342 where $R$ is the robust parameter and $sigma_R$ is the noise
1343 parameter.
1344 end{description}
1345 For more details about Briggs (aka robust) weighting, see the htmladdnormallink{Briggs thesis}
1346 {briggsURL}.
1348 Note that this weighting is {em not} cumulative since the imaging weights are
1349 calculated from the specified weight (function of noise; usually $1/sigma^2$) per visibility
1350 (actually stored in the WEIGHT column).
1351 """
1352 return self._swigobj.weight(type, rmode, noise, robust, fieldofview, npixels, mosaic)
1354 def mapextent(self, ref='J2000', movingsource='', pointingcolumntouse='DIRECTION'):
1355 """TODO: description must be filled
1356 """
1357 return self._swigobj.mapextent(ref, movingsource, pointingcolumntouse)
1359 def pointingsampling(self, pattern='raster', ref='J2000', movingsource='', pointingcolumntouse='DIRECTION', antenna=''):
1360 """Calculate sampling interval of an MS.
1361 """
1362 return self._swigobj.pointingsampling(pattern, ref, movingsource, pointingcolumntouse, antenna)