Build: #6 was successful Changes by Neal Schweighart
Code commits
casa6
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Neal Schweighart 869861241b9fa59d257297eaddd89a795c92923e
Merge branch 'master' into CAS-14249
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Neal Schweighart d34d3c567f37913e6b1854c1c86758d55b57cd1e
Removed complex conditions since they will never occur in this case. Removed mention of par and parok since only fpar is used. Cleaned up some spacing. Unwrap phase pol uses polid 0 and 1 now before they were set to polId which would lead both to have an id of 1
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Akeem Wells 8206bc4219f6ada764d5f08c110beb360b66f840 m
Pull request #796: CAS-14262
Merge in CASA/casa6 from CAS-14262 to master
* commit 'ca46cb7299504b19145e91bc41c8ffcd3e16e1be':
Revert Force Failure
Update to xmlrunner converter
Force Test Failures to test parser failure conditions
Update to generate base xml if expected one is not written
Add Update to parse fail and skip tests correctly
Test Converted for use with xmlrunner module -
Akeem Wells ca46cb7299504b19145e91bc41c8ffcd3e16e1be m
Revert Force Failure
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Akeem Wells 6d7359103673b2ee55ef4a15c47c37dc2ea2bdd6 m
Merge branch 'CAS-14262' of https://open-bitbucket.nrao.edu/scm/casa/casa6 into CAS-14262
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Akeem Wells 5fc386c7e97a5cb508dc38b18d0fed9eac40c3bf m
Update to xmlrunner converter
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Akeem Wells 229ddbe8ac1c327834a5cff89096e4672d3c3b05 m
Merge branch 'CAS-14262' of https://open-bitbucket.nrao.edu/scm/casa/casa6 into CAS-14262
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Akeem Wells 9af7aad697f41e9baf8907e1c522bd34891f9c2f m
Merge branch 'master' into CAS-14262
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Federico Montesino Pouzols 335ea9fffc368dccd2b84cd0b60a772dadafebb3 m
Pull request #794: CAS-14332: fix task_flagdata for numpy 1.26.4
Merge in CASA/casa6 from CAS-14332 to master
* commit '5e023d676be241ac096c37a0b833103185d64d92':
This change is unrelated to this branch, but it is necessary to make the CMake Pull Request tests pass as there was a conflicting line in the casatestutils json file that maps with the JIRA components to run the tests.
constrain comparison to relevant (str) type CAS-14332 -
David Mehringer c24e720af1e4d640344ab04f4e5f9205338f8784 m
Pull request #795: update docs timesforfield(), timesforintent(), timesforscans()
Merge in CASA/casa6 from CAS-14316 to master
* commit '794463578c58f72e42987a157378c83a59056539':
update docs timesforfield(), timesforintent(), timesforscans() -
Neal Schweighart 0b66fb6b7373d804c931e7df8b51fcd57e416f72 m
Pull request #793: changed test_fitorder to compare array lengths instead of all values since in new versions of numpy this results in an error
Merge in CASA/casa6 from CAS-14333 to master
* commit 'c815911aac7300d7765ef03064f1a7a99d19e169':
changed test_fitorder to compare array lengths instead of all values since in new versions of numpy this results in an error -
Sandra Castro 5e023d676be241ac096c37a0b833103185d64d92 m
This change is unrelated to this branch, but it is necessary to make the CMake Pull Request tests pass as there was a conflicting line in the casatestutils json file that maps with the JIRA components to run the tests.
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Takeshi Nakazato 7e67a9e543ba2bb8584d41ffe72e926ef3a3bc3b m
Pull request #792: CAS-14335 use scipy.signal.windows.gaussian instead of deprecated function scipy.signal.gaussian
Merge in CASA/casa6 from CAS-14335 to master
* commit '21417c57a99ca449876de93142a6271bf139ca8e':
CAS-14335 use scipy.signal.windows.gaussian instead of deprecated function scipy.signal.gaussian -
Akeem Wells cfdb11665849735c28f56d6a668b24f88843926f m
Force Test Failures to test parser failure conditions
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Akeem Wells 068aed40bf4dba2e23550b08f7a8cac9b17c576a m
Merge branch 'master' into CAS-14262
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Federico Montesino Pouzols a28f49ac1e069c77423533c992896c3e9a2bf63a m
constrain comparison to relevant (str) type CAS-14332
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Neal Schweighart c815911aac7300d7765ef03064f1a7a99d19e169 m
changed test_fitorder to compare array lengths instead of all values since in new versions of numpy this results in an error
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Takeshi Nakazato 21417c57a99ca449876de93142a6271bf139ca8e m
CAS-14335 use scipy.signal.windows.gaussian instead of deprecated function scipy.signal.gaussian
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Ville Suoranta d98e888ac277212e1a072bbc09273278e704a2db m
Trigger a build
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Akeem Wells a90317ae63b3fb5805c1f33173bec78961c0ac3a m
Update to generate base xml if expected one is not written
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David Mehringer 794463578c58f72e42987a157378c83a59056539 m
update docs timesforfield(), timesforintent(), timesforscans()
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Akeem Wells ec556653b9988cd1b9b0d61590a808a19d6d5d2a m
Pull request #790: CAS-13719
Merge in CASA/casa6 from CAS-13719 to master
* commit '30b7d8d2c562a14ba7fe32512f908732244a9614':
remove .DS_Store files from code tree
Finalize CAS-13719, with change for CAS-13298
Added remaining XML changes from CAS-13719
Updated XML simobserve, parameter incenter. Running commit to check if all works as expected before updating other XML files.
Added punctuation to task description (as a test) -
Akeem Wells a9897f4bb362e28ba6947ed0284caacdda2b7a36 m
Add Update to parse fail and skip tests correctly
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Akeem Wells a2be01f56847b53d0692dec5194fbfb23bfc8181 m
Test Converted for use with xmlrunner module
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Akeem Wells 30b7d8d2c562a14ba7fe32512f908732244a9614 m
remove .DS_Store files from code tree
- .DS_Store (version 30b7d8d2c562a14ba7fe32512f908732244a9614) (diffs)
- casa5/.DS_Store (version 30b7d8d2c562a14ba7fe32512f908732244a9614) (diffs)
- casa5/code/.DS_Store (version 30b7d8d2c562a14ba7fe32512f908732244a9614) (diffs)
- casa5/gcwrap/.DS_Store (version 30b7d8d2c562a14ba7fe32512f908732244a9614) (diffs)
- casa5/gcwrap/tasks/.DS_Store (version 30b7d8d2c562a14ba7fe32512f908732244a9614) (diffs)
- casatasks/.DS_Store (version 30b7d8d2c562a14ba7fe32512f908732244a9614) (diffs)
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Akeem Wells 89eddf0ec3fb26706cb04945cb2f88d75d6ef607 m
Merge remote-tracking branch 'origin/master' into CAS-13719
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Pam Harris <pharris@nrao.edu> 37d015eb1c1247b46f48262b5d172f0e3b2091d6 m
Pull request #788: CAS-14276 fix plotbandpass exception
Merge in CASA/casa6 from CAS-14276 to master
* commit 'e62c959ec065f26e98dc6a4a99ec3f403ae8e9bc':
Fix showfdm overlay colors exception -
Takahiro Tsutsumi 9ffdd79afdbadf82e187d984116ab67b8f63c825 m
Pull request #784: CAS-14272
Merge in CASA/casa6 from CAS-14272 to master
* commit '3ef88ee1bb5876d427e9a17c769178b8a34a5dc5':
Re-worded the location of JPL-Horzions table in the task's docstring. Removed casa5-related code. Updated the docstring for MIME format test to reflect the current behavior. Removed the old casadoc URL in the task xml.
removed debug print statement
Removed reference to ephemeris data in a MIME format file
One more bug fix to fix the test failures
Fix some bugs
Disable MIME format JPL-Horizons data support and delete JPLEphem_reader2 -
Kazuhiko Shimada 22928258c5eb266571b24add53e1189931c67845 m
Pull request #783: CAS-12844
Merge in CASA/casa6 from CAS-12844 to master
* commit 'd25edc89669436fe5fac52644547f30a2cd2cf80':
CAS-12844: check existence of keyword 'QuantumUnits' in PRESSURE table
CAS-12844: modified treatment of the pressure valiable
CAS-12844: fixed a bug
CAS-12844: modified to take the pressure unit and an elevation of antenna from TB -
Ville Suoranta 7dfd21363f99af3600ca99364b3e54c0ca73a97d m
Trigger a build
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Kazuhiko Shimada d25edc89669436fe5fac52644547f30a2cd2cf80 m
Merge remote-tracking branch 'origin' into CAS-12844
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Pam Harris <pharris@nrao.edu> e62c959ec065f26e98dc6a4a99ec3f403ae8e9bc m
Merge branch 'master' into CAS-14276
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David Mehringer 0b6f227d7bf926ae4f1d9aa5a0cb3ab744924fb5 m
Pull request #782: CAS-14235 new WS client task getantposalma
Merge in CASA/casa6 from CAS-14235 to master
* commit '3ca5b63d630430a4c0f97da661ee3e3f6b196db8': (37 commits)
doc corrections requested by akepley
tweak of output data structure
change output struct from list to dict
added "caltype" to metadata
fix up test
add json.loads() to write to a file something easier for gencal to handle. Requested by Enrique.
minor doc updates
new doc updates
doc fix
Update component_to_test_map to add getantposalma
add metaata to output file as python dict
check point
check point
change default server to prod server, update tests so they all pass
finish renaming task
rename antposalma -> getantposalma
check point
rename
remove obsolete files, add test area for antposalma
attempt to figure out when to use prod server vs dev server
... -
Bjorn Emonts 62b7c847c8f9f2f1d1c7d3a35720a71f73de51ee m
Finalize CAS-13719, with change for CAS-13298
- .DS_Store (version 62b7c847c8f9f2f1d1c7d3a35720a71f73de51ee) (diffs)
- casa5/.DS_Store (version 62b7c847c8f9f2f1d1c7d3a35720a71f73de51ee) (diffs)
- casa5/gcwrap/.DS_Store (version 62b7c847c8f9f2f1d1c7d3a35720a71f73de51ee) (diffs)
- casa5/gcwrap/tasks/msuvbin.xml (version 62b7c847c8f9f2f1d1c7d3a35720a71f73de51ee) (diffs)
- casatasks/.DS_Store (version 62b7c847c8f9f2f1d1c7d3a35720a71f73de51ee) (diffs)
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Bjorn Emonts 5df6874a00722168afc8124460bf27b5b91400de m
Added remaining XML changes from CAS-13719
- .DS_Store (version 5df6874a00722168afc8124460bf27b5b91400de) (diffs)
- casa5/.DS_Store (version 5df6874a00722168afc8124460bf27b5b91400de) (diffs)
- casa5/code/.DS_Store (version 5df6874a00722168afc8124460bf27b5b91400de) (diffs)
- casa5/gcwrap/.DS_Store (version 5df6874a00722168afc8124460bf27b5b91400de) (diffs)
- casa5/gcwrap/tasks/.DS_Store (version 5df6874a00722168afc8124460bf27b5b91400de) (diffs)
- casa5/gcwrap/tasks/msuvbin.xml (version 5df6874a00722168afc8124460bf27b5b91400de) (diffs)
- casatasks/xml/bandpass.xml (version 5df6874a00722168afc8124460bf27b5b91400de) (diffs)
- casatasks/xml/gaincal.xml (version 5df6874a00722168afc8124460bf27b5b91400de) (diffs)
- casatasks/xml/imstat.xml (version 5df6874a00722168afc8124460bf27b5b91400de) (diffs)
- casatasks/xml/simobserve.xml (version 5df6874a00722168afc8124460bf27b5b91400de) (diffs)
- casatasks/xml/tclean.xml (version 5df6874a00722168afc8124460bf27b5b91400de) (diffs)
- casatools/xml/image.xml (version 5df6874a00722168afc8124460bf27b5b91400de) (diffs)
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Takahiro Tsutsumi ed4839310801d2afe38c79d34e674760f1292e95 m
Pull request #781: CAS-13359
Merge in CASA/casa6 from CAS-13359 to master
* commit '5c33a81582dbdaa21dea29ccb23df972dbfae96c':
Now usescratch's default is True in setjy, modified setjy command in test_model_keys to explicitly set usescatch=False
Add a test for the exception handling
Modify to use RuntimeError rather than generic Exception and the boolean comparison to follow PEP8
Minor edit to retrigger build
A minor edit in the xml help doc
Change the default for usescratch to True. Catch to raise an exception when Butler-JPL-Horizons and usescratch = False are set. -
George Moellenbrock 9595e18f176bbe305257ba48a8c9cd48b056b8be m
Pull request #779: CAS-13544
Merge in CASA/casa6 from CAS-13544 to master
* commit '067003ae1f13325b61f64ccbd286adfbf761c9d9':
For CAS-13544, remove CRs in xml text that seem to mess up formatting in casadocs.
For CAS-13544, updated test_task_polfromgain.py to use proper symbolic link to input data in casatestdata (checked in by scastro this date); cleaned up polfromgain.xml to match corresponding changes in casadocs.
For CAS-13544, further refinements to polfromgain task; complete revision of test_task_polfromgain.py
For CAS-13544: improved handling of parang cycles in discerning available parang range; temporarily disabled some unit tests pending updates
For CAS-13544, in polfromgain task, trapped insufficient parallactic angle coverage (via new minpacov parameter) to avoid implausible results, including a negative gain ratio that causes a 'math domain error' and failure of the task to complete. -
Bjorn Emonts 188a55e9a9c3c424c5a3ab29d0013cf17bfd2511 m
Updated XML simobserve, parameter incenter. Running commit to check if all works as expected before updating other XML files.
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David Mehringer 3ca5b63d630430a4c0f97da661ee3e3f6b196db8 m
doc corrections requested by akepley
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Bjorn Emonts f7b71aa87bc0b818887da664450aa28a7531191f m
Added punctuation to task description (as a test)
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David Mehringer 253db56ae747679fdda3af7ea4c679121a9812eb m
tweak of output data structure
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David Mehringer 3006ac45e0cbac8d4d24cfa9d6e662abd31986fe m
change output struct from list to dict
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Ville Suoranta 320ea757542ecd9eb1e6e8ad25009da79a155579 m
Pull request #778: CAS-14093
Merge in CASA/casa6 from CAS-14093 to master
* commit '19913d87ffc730f6fa3dc4b4f9f32a663004e698': (37 commits)
Update build.conf versions casaplotserver 1.8.1, casaplotms 2.4.1, casalogger 1.0.18, casafeather 0.0.21, casatablebrowser 0.0.34
Update plotms in build.conf
Fix build.conf plotms
Update plotserver version
Update build.conf to dev versions
Update PlotMS in build.conf to 2.3.4a14231.dev6
Trigger a build
Compare float values with tolerances rather than exact values.
Restore casaviewer in build.conf
Restore almatasks in build.conf
Add build.conf with arm packages
Remove failed arch attempts
Revert "Revert "Test -arch arm64""
Revert "Revert "Try arm64 as a swig compile option""
Revert "Allow single element Java version number"
Revert "Add defition CMAKE_OSX_ARCHITECTURES=arm64"
Revert "Try running Java with arch -arm64"
Revert "Fix previous commit"
Revert "Fix mod-closure"
Fix mod-closure
... -
David Mehringer c268bbb13f43c952ecdfe3f663c8cf23f37b1d40 m
added "caltype" to metadata
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David Mehringer 5d92287e99205d4c31dfe00567dc6f1e71ed7a0a m
fix up test
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David Mehringer 75cdc73a5ac4c7af9487424c1fb3c33a775cfef6 m
add json.loads() to write to a file something easier for gencal to handle. Requested by Enrique.
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Takeshi Nakazato 66bed521c7693786d372cd31d3f0fd7973b23473 m
Pull request #777: CAS-14266
Merge in CASA/casa6 from CAS-14266 to master
* commit '35aa5b675a4d465b976538cdcd112c1f70eb3772':
CAS-14266 do not initialize UVWMachine for single-dish imaging -
Ville Suoranta 19913d87ffc730f6fa3dc4b4f9f32a663004e698 m
Update build.conf versions casaplotserver 1.8.1, casaplotms 2.4.1, casalogger 1.0.18, casafeather 0.0.21, casatablebrowser 0.0.34
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Ville Suoranta aa41bdeada34abe6abd5e6bd2eecf2ed8bde13d8 m
Update plotms in build.conf
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Ville Suoranta 192ab305cd10d39ec1ec6e806a250ea65d8dcf7a m
Merge branch 'master' into CAS-14093
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Takahiro Tsutsumi 3ef88ee1bb5876d427e9a17c769178b8a34a5dc5 m
Re-worded the location of JPL-Horzions table in the task's docstring. Removed casa5-related code. Updated the docstring for MIME format test to reflect the current behavior. Removed the old casadoc URL in the task xml.
-
David Mehringer da4f80b39414f165c67d85d1d23bb5898bf9ba94 m
minor doc updates
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Ville Suoranta a24aff35f28f2061f31a1f8f669900acd7ea55d3 m
Pull request #775: Update Casacore to f1c629840e
Merge in CASA/casa6 from CAS-14274 to master
* commit '0ea19da0cbb2b20ba84125a4a91978e020429fdc':
Update Casacore to f1c629840e -
Takeshi Nakazato 35aa5b675a4d465b976538cdcd112c1f70eb3772 m
Merge branch 'master' into CAS-14266
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David Mehringer 8bee9ba3c37c5edf63a676bd12c987b5567874de m
new doc updates
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David Mehringer 9339dae883e19ae236ae3ceae463c25408f65726 m
doc fix
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David Mehringer e71238a4ce8e75e611ebe81537470bbc5a7958d7 m
Merge branch 'master' into CAS-14235
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Srikrishna Sekhar 78334a52026c0c1d7851138cb0994cef9978b41d m
Pull request #776: CAS-14184
Merge in CASA/casa6 from CAS-14184 to master
* commit '23ace523ef21f0c5a04b5bd5f527a147712e0274': (55 commits)
CAS-14184 : Fix test to account for previous change
CAS-14184 : Remove print statements in deconvolve
CAS-14184 : Fix to deconvolve return dict
CAS-14184 : Fixes to gclean tests + masking bugfix
fixed typo in json entry.
Renamed test_task_gclean to test_imagerhelpers_gclean and moved it to the scripts directory. Added the new test script to the mapping json file to run automatically in Bamboo.
Added main at the end of tests. Removed unused imports Renamed class of test.
CAS-14184 : Bug fix for previous commit
CAS-14184 : Fix for mask MTMFS naming convention
CAS-14184 : Test for partial mask in gclean
CAS-14184 : Fix for history logging
CAS-14184 : Fix mask handling logic on startup
CAS-14184 : Fix typos in automasking params
CAS-14184 : Fixed masking params
CAS-14184 : More fixes to iteration control
CAS-14184 : Add check for user updated mask
CAS-14184 : Fix peakres calculation
CAS-14184 : Fixes for test failures
CAS-14184 : Bugfix for niter=0 peakres calculation
CAS-14184 : Fix cyclefactor param check
... -
Takahiro Tsutsumi 6bd7db5c17b803b035bea29ac78fe66c6ca7f1ca m
removed debug print statement
-
Srikrishna Sekhar 23ace523ef21f0c5a04b5bd5f527a147712e0274 m
CAS-14184 : Fix test to account for previous change
The "test_mask_preserve_input_zero_mask" test in test_task_deconvolve
was failing because of the wrong stopcode. As of the previous commit the
stopcode is now over-written by the niter=0 dict, rather than what is
written by the C++ code. This has no operation impact apart from the
specific niter=0 case, and the stopcode for this test had to be changed
to reflect that. -
Srikrishna Sekhar a467ec080acdb61d659987fbe6e0753ee45a53aa m
Merge remote-tracking branch 'origin/master' into CAS-14184
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Srikrishna Sekhar 17dcee84afc4faca43b8b41e7aab19691df4289e m
CAS-14184 : Remove print statements in deconvolve
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Srikrishna Sekhar 8f601cfc309e7f73966f090414c2ed60d546ab12 m
CAS-14184 : Fix to deconvolve return dict
The task_deconvolve return dictionary did not contain "stopDescription"
for the niter=0 case. This commit fixes that issue. -
Srikrishna Sekhar 9ed09e701eb853bbf889175a6ecd0e461c727551 m
CAS-14184 : Fixes to gclean tests + masking bugfix
If a static user mask was provided in the input (e.g.,
circle[[50px,50px],10px]) the final mask-update deconvolve step was
breaking. It did not break for auto-masking or any other type of input
mask. This has been fixed by setting mask = '' in the last deconvolve
call, which still does the right thing for auto-masking etc.
Further, the default masking behaviour changed as of a few commits ago.
This was not reflected in the test cases, so they were all failing. The
tests have been updated to reflect this new behaviour as well. -
Takahiro Tsutsumi d7cf6d1b9742acfad5b4d6ef0127649b9da5f8b2 m
Removed reference to ephemeris data in a MIME format file
-
Sandra Castro ee54dadb2253e44ecff8d63cea658fe4bee68378 m
fixed typo in json entry.
-
Sandra Castro 4efe43b2c2c674172d60e978131877341ee8699d m
Renamed test_task_gclean to test_imagerhelpers_gclean and moved it to the scripts directory. Added the new test script to the mapping json file to run automatically in Bamboo.
-
Sandra Castro a0a4205bd456371e0e0c453561c0ade49eb211b0 m
Added main at the end of tests. Removed unused imports Renamed class of test.
-
Pam Harris <pharris@nrao.edu> 5ff0a305786087494e3246f505386d7d8f4e2581 m
Fix showfdm overlay colors exception
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Srikrishna Sekhar f6b7c80f4bfc7907d9bc95d0c9d6fd35a2d80c68 m
CAS-14184 : Bug fix for previous commit
Forgot to remove a second line that had the wrong maskname. Also removed
extraneous print statements in gclean -
Srikrishna Sekhar 50f6c9f8537719edab072fad4f639334fdce46e7 m
CAS-14184 : Fix for mask MTMFS naming convention
The mask for MT-MFS is called "imagename.mask" not "imagename.mask.tt0". -
Srikrishna Sekhar 53ab1f24ba528e45569bad98c99790b6ad3ae149 m
CAS-14184 : Test for partial mask in gclean
Added a unit test to check the use case of a single channel masked while
deconvolving a cube in gclean -
Sandra Castro 0a45919b4a432bf1eb9c52d556b7589ec2b6907e m
Pull request #774: CAS-13714
Merge in CASA/casa6 from CAS-13714 to master
* commit '9bd7a74d61dfcdb3638178e26880df518f04c9be':
This commit is unrelated to the changes on this branch. They are changes needed for the verification tests when running tests that are not in the casatasks/tests/tasks/ path. I also sorted again some of the entries in the json file that were out of place.
Removed unused function prepinputmask.
Removed casa5-related code from the tests. -
Takahiro Tsutsumi 267dac49f8e3475f903e329df67f090fc7dd407d m
One more bug fix to fix the test failures
-
Srikrishna Sekhar 1f3998a5ff73643fb1fc9ade1ce1f9a4917b9655 m
CAS-14184 : Fix for history logging
If convergence was hit, the logger would repeatedly print out it's entire
history to the log. Issued a fix to account for that. -
Srikrishna Sekhar 730b65e03080d7411bacd914fef0d8b6e0e6e95b m
CAS-14184 : Fix mask handling logic on startup
The mask handling used to be in the frontend, but moved it to the
backend. It now correctly accounts for a restarted state with a
previously active mask.
The logic is :
- Initial launch : If usemask='user' and mask = '' then make sure the
default mask is filled with zeros before the GUI is launched. Leave mask
untouched for all other cases
- Restart :
- If usemask='user' and mask='' :
- If mask exists on disk - leave untouched
- If mask does not exist, make sure mask is filled with zeros
- Leave mask untouched for all other cases -
Takahiro Tsutsumi 41944b8c1edd1c77600dc869760eaf59fe50d18d m
Fix some bugs
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Srikrishna Sekhar 8efbcbc1ffda9b409d0e4a2831706e4e7e6ac01b m
CAS-14184 : Fix typos in automasking params
There were typos in the newly added automasking parameters that were
causing gclean to crash on startup. -
Srikrishna Sekhar a3f52b7c17da4127698d0d7d974bd865aeb50db5 m
CAS-14184 : Fixed masking params
Some auto-multithresh parameters were missing from the _gclean input,
added those in.
The order of masking was also incorrect, the auto-mask growing was
happening _prior_ to deconvolution rather than after. This has also been
fixed. -
Srikrishna Sekhar 3d8bd599cb1f4760840c16eb488519ab4115db7d m
CAS-14184 : More fixes to iteration control
-
Akeem Wells 04c361bc1fbb801e3e0c30df59c8ac32b18fb8c9 m
Update component_to_test_map to add getantposalma
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Takahiro Tsutsumi 5c33a81582dbdaa21dea29ccb23df972dbfae96c m
Now usescratch's default is True in setjy, modified setjy command in test_model_keys to explicitly set usescatch=False
-
Srikrishna Sekhar eca97e82ad9bd49865c951c595935bfe3e5ce4b8 m
CAS-14184 : Add check for user updated mask
The user can update/change the mask in between major cycles. Previously
gclean was invoking `deconvolve` to do this, but now there is an
additional function that uses `imstat` to check if the peakresidual has
changed because of a mask update in between major cycles.
This has implications on whether to continue deconvolution or not, and
therefore needs to be done before deconvolve is called. -
Ville Suoranta 0ea19da0cbb2b20ba84125a4a91978e020429fdc m
Update Casacore to f1c629840e
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Srikrishna Sekhar de3560ad489ff41074dfc91879749d16c589b824 m
CAS-14184 : Fix peakres calculation
Added a check for masksum while calculating peakres across a cube. Only
in the case that masksum > 0 is peakres considered now.
This prevents the "bouncing" behaviour reported by Josh described below:
Iteration 1 :
field 0, chan 0, stokes 0, peakres [1.0149141550064087]
field 0, chan 1, stokes 0, peakres [5.736467361450195]
field 0, chan 2, stokes 0, peakres [4.154384136199951]
cyclethreshold = 1.0222507446548832
Above the cycle threshold is determined by the global peak value (5.736)
and chan 0 is cleaned down until the threshold. It returns to the GUI
and we click again, nothing happens because we are in convergence. But
peakres still gets updated as below.
Iteration 2 (after convergence)
field 0, chan 0, stokes 0, peakres [1.0149141550064087, 1.014911413192749]
field 0, chan 1, stokes 0, peakres [5.736467361450195, -0.0]
field 0, chan 2, stokes 0, peakres [4.154384136199951, 0.0]
cyclethreshold=0.18085938305290838
Here we have hit convergence, we take the niter=0 path in deconvolve and
set peakres=0 for channels with no mask. Now cyclethreshold is
determined by the residual in the first channel, and drops. But since we
are in the niter=0 path no deconvolution happens.
Iteration 3 :
field 0, chan 0, stokes 0, peakres [1.0149141550064087, 1.014911413192749, 0.6902092099189758]
field 0, chan 1, stokes 0, peakres [5.736467361450195, -0.0, 5.736467361450195]
field 0, chan 2, stokes 0, peakres [4.154384136199951, 0.0, 4.154384136199951]
cyclethreshold = 1.0222507446548832
We end up doing more deconvolution based on the previous cyclethreshold,
and now once again the new cyclethreshold is determined by the global
peak (5.736) and is too high to continue deconvolution. -
Srikrishna Sekhar 9f8146167b40abf769099d49001e6a9023fbe182 m
CAS-14184 : Fixes for test failures
There was a bug in how a non-existent mask was handled. This has now
been fixed. -
Takahiro Tsutsumi b06839b968c746181d697a99115307657af4ef5b m
Disable MIME format JPL-Horizons data support and delete JPLEphem_reader2
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Takahiro Tsutsumi de151c17b096a6cca7b124c9276b791e8508c6de m
Add a test for the exception handling
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Takeshi Nakazato 798ee8caa94bceea79c81f92f861f33511707835 m
Merge branch 'master' into CAS-14266
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Srikrishna Sekhar 03739099c27bf0e680281760efb1afac3d8d1800 m
CAS-14184 : Bugfix for niter=0 peakres calculation
If no mask was passed in for the niter=0 case, the `ImagingDict`
class set the `mask` parameter to -1 (instead of the pixel mask).
peakRes was always calcualted as `np.amax(image_pixels * mask_pixels)`
so when mask = -1 it picked the highest negative as the peakRes.
This commit fixes that bug, and has been confirmed to pass the
previously failing task_tclean tests.
Additionally, removed a check in test_task_tclean that asserted
len(summaryminor) == 0 for niter = 0. -
Takahiro Tsutsumi 8471fd97d111872a616153dea228ffdda342bc48 m
Modify to use RuntimeError rather than generic Exception and the boolean comparison to follow PEP8
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Sandra Castro 9bd7a74d61dfcdb3638178e26880df518f04c9be m
This commit is unrelated to the changes on this branch. They are changes needed for the verification tests when running tests that are not in the casatasks/tests/tasks/ path. I also sorted again some of the entries in the json file that were out of place.
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Ville Suoranta 2ad6b58ab24c12d5185c3d880236e6897c2ea62d m
Pull request #773: CAS-14125
Merge in CASA/casa6 from CAS-14125 to master
* commit '84f7fac6687c36a544699c3c4d06fe9baa4998f6':
Use c++14 standard on all platforms
Add status messages
Require C++14 on Macs -
Takahiro Tsutsumi 9b33b782bf7b88f5838db18251c367e8d5e6fffb m
Merge branch 'master' into CAS-13359
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David Mehringer 9715d52dea334c361d8caf417023d9f3bac88399 m
Merge branch 'master' into CAS-14235
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Sandra Castro dd2622d7de222d9b0f67353a2f4e328742e12bf3 m
Removed unused function prepinputmask.
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Ville Suoranta 0d4100fbafd40a5aedc0ee4196179abd6db382a2 m
Fix build.conf plotms
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Ville Suoranta 5fab491744c85220b289808c5d465daeb97d0ff6 m
Update plotserver version
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Ville Suoranta 51eca46c178e8f3a9416a02d0872f05cb73c2c4e m
Update build.conf to dev versions
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Sandra Castro c6b60c4dead599f913170bb1d070f460d6b89111 m
Removed casa5-related code from the tests.