Build: #2 did not complete
Job: Old CMake build ManyLinux 2.28 did not complete
Job result summary
- Queued
- Source updated
- Started
- Completed
- Cancelled
- Agent
- cbt-el7-6.cv.nrao.edu
Error summary
The build generated some errors. See the full build log for more details.
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Switched to a new branch 'CAS-13970'
Switched to a new branch 'CAS-13970'
--2022-10-28 12:52:51-- https://github.com/tnakazato/sakura/archive/refs/tags/libsakura-5.1.3.tar.gz
Resolving github.com (github.com)... 140.82.113.3
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Location: https://codeload.github.com/tnakazato/sakura/tar.gz/refs/tags/libsakura-5.1.3 [following]
--2022-10-28 12:52:52-- https://codeload.github.com/tnakazato/sakura/tar.gz/refs/tags/libsakura-5.1.3
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CMake Deprecation Warning at CMakeLists.txt:24 (cmake_minimum_required):
Compatibility with CMake < 2.8.12 will be removed from a future version of
CMake.
Update the VERSION argument <min> value or use a ...<max> suffix to tell
CMake that the project does not need compatibility with older versions.
CMake Deprecation Warning at src/CMakeLists.txt:24 (cmake_minimum_required):
Compatibility with CMake < 2.8.12 will be removed from a future version of
CMake.
Update the VERSION argument <min> value or use a ...<max> suffix to tell
CMake that the project does not need compatibility with older versions.
CMake Warning (dev) at src/CMakeLists.txt:26 (project):
Policy CMP0048 is not set: project() command manages VERSION variables.
Run "cmake --help-policy CMP0048" for policy details. Use the cmake_policy
command to set the policy and suppress this warning.
The following variable(s) would be set to empty:
libsakura_VERSION_MAJOR
libsakura_VERSION_MINOR
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at /opt/_internal/pipx/venvs/cmake/lib/python3.9/site-packages/cmake/data/share/cmake-3.24/Modules/FindPackageHandleStandardArgs.cmake:438 (message):
The package name passed to `find_package_handle_standard_args` (EIGEN3)
does not match the name of the calling package (Eigen3). This can lead to
problems in calling code that expects `find_package` result variables
(e.g., `_FOUND`) to follow a certain pattern.
Call Stack (most recent call first):
cmake-modules/FindEigen3.cmake:16 (find_package_handle_standard_args)
src/CMakeLists.txt:29 (find_package)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at /opt/_internal/pipx/venvs/cmake/lib/python3.9/site-packages/cmake/data/share/cmake-3.24/Modules/FindPackageHandleStandardArgs.cmake:438 (message):
The package name passed to `find_package_handle_standard_args` (LOG4CXX)
does not match the name of the calling package (Log4Cxx). This can lead to
problems in calling code that expects `find_package` result variables
(e.g., `_FOUND`) to follow a certain pattern.
Call Stack (most recent call first):
cmake-modules/FindLog4Cxx.cmake:5 (FIND_PACKAGE_HANDLE_STANDARD_ARGS)
src/CMakeLists.txt:30 (find_package)
This warning is for project developers. Use -Wno-dev to suppress it.
CMAKE_BUILD_TYPE is
CMAKE_CXX_COMPILER_ID is GNU
SIMD_ARCH is GENERIC
CMAKE_CXX_FLAGS is -I/data/build/sakurabuild/bin -I/data/source/sakurasource/sakura-libsakura-5.1.3/libsakura/src -std=c++11 -I/usr/include/eigen3 -I/usr/include -m64 -Wall -Wno-deprecated-register -fPIC -pipe
default CMAKE_CXX_FLAGS_RELEASE is -O3 -DNDEBUG
default CMAKE_CXX_FLAGS_DEBUG is -g
CMAKE_CXX_FLAGS_RELEASE was set to -funroll-all-loops -O3 -DNDEBUG
% Total % Received % Xferd Average Speed Time Time Time Current
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Boost testing framework not found.
CASACPP version: 6.5.3.9
In file included from /usr/lib64/python3.8/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib64/python3.8/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from /tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/src/tools/../../binding/include/swigconvert_python.h:5,
from /tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/binding/source/conversions_python.cc:3:
/usr/lib64/python3.8/site-packages/numpy/core/include/numpy/ndarraytypes.h:84:21: note: declared here
84 | NPY_CHAR NPY_ATTR_DEPRECATE("Use NPY_STRING"),
| ^~~~~~~~
/tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/binding/source/conversions_python.cc: In function ‘void casac::numpy2vector(PyArrayObject*, std::vector<casac::complex>&, std::vector<long int>&)’:
/tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/binding/source/conversions_python.cc:308:10: warning: ‘NPY_CHAR’ is deprecated: Use NPY_STRING [-Wdeprecated-declarations]
308 | case NPY_CHAR: \
| ^~~~~~~~
/tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/binding/source/conversions_python.cc:353:1: note: in expansion of macro ‘NUMPY2VECTOR’
353 | NUMPY2VECTOR(casac::complex,casac::complex,npy_cdouble,(PyArray_TYPE((PyArrayObject*)obj) == NPY_CDOUBLE),? 1 : 0,COPY_CCOMPLEX,stringtoccomplex,CPXTOCCOMPLEX,DOCOMPLEX,,,,,(*to).re = (*from).real; (*to).im = (*from).imag,1)
| ^~~~~~~~~~~~
In file included from /usr/lib64/python3.8/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib64/python3.8/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from /tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/src/tools/../../binding/include/swigconvert_python.h:5,
from /tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/binding/source/conversions_python.cc:3:
/usr/lib64/python3.8/site-packages/numpy/core/include/numpy/ndarraytypes.h:84:21: note: declared here
84 | NPY_CHAR NPY_ATTR_DEPRECATE("Use NPY_STRING"),
| ^~~~~~~~
/tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/binding/source/conversions_python.cc: In function ‘void casac::numpy2vector(PyArrayObject*, std::vector<std::__cxx11::basic_string<char> >&, std::vector<long int>&)’:
/tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/binding/source/conversions_python.cc:308:10: warning: ‘NPY_CHAR’ is deprecated: Use NPY_STRING [-Wdeprecated-declarations]
308 | case NPY_CHAR: \
| ^~~~~~~~
/tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/binding/source/conversions_python.cc:354:1: note: in expansion of macro ‘NUMPY2VECTOR’
354 | NUMPY2VECTOR(std::string,char,const char,(false),,COPY_PYNSTRING,,,NODOCOMPLEX,booltostring,inttostring,doubletostring,complextostring,*to = *from,itemsize)
| ^~~~~~~~~~~~
In file included from /usr/lib64/python3.8/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib64/python3.8/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from /tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/src/tools/../../binding/include/swigconvert_python.h:5,
from /tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/binding/source/conversions_python.cc:3:
/usr/lib64/python3.8/site-packages/numpy/core/include/numpy/ndarraytypes.h:84:21: note: declared here
84 | NPY_CHAR NPY_ATTR_DEPRECATE("Use NPY_STRING"),
| ^~~~~~~~
/tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/binding/source/conversions_python.cc: In function ‘void casac::pyobj2variant(PyObject*, casac::variant&)’:
/tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/binding/source/conversions_python.cc:766:10: warning: ‘NPY_CHAR’ is deprecated: Use NPY_STRING [-Wdeprecated-declarations]
766 | case NPY_CHAR: \
| ^~~~~~~~
/tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/binding/source/conversions_python.cc:1041:5: note: in expansion of macro ‘HANDLE_NUMPY_ARRAY’
1041 | HANDLE_NUMPY_ARRAY \
| ^~~~~~~~~~~~~~~~~~
/tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/binding/source/conversions_python.cc:1086:5: note: in expansion of macro ‘PYOBJ2VARIANT’
1086 | PYOBJ2VARIANT(result.push,,false)
| ^~~~~~~~~~~~~
In file included from /usr/lib64/python3.8/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib64/python3.8/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from /tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/src/tools/../../binding/include/swigconvert_python.h:5,
from /tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/binding/source/conversions_python.cc:3:
/usr/lib64/python3.8/site-packages/numpy/core/include/numpy/ndarraytypes.h:84:21: note: declared here
84 | NPY_CHAR NPY_ATTR_DEPRECATE("Use NPY_STRING"),
| ^~~~~~~~
/tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/binding/source/conversions_python.cc: In function ‘casac::variant casac::pyobj2variant(PyObject*, bool)’:
/tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/binding/source/conversions_python.cc:766:10: warning: ‘NPY_CHAR’ is deprecated: Use NPY_STRING [-Wdeprecated-declarations]
766 | case NPY_CHAR: \
| ^~~~~~~~
/tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/binding/source/conversions_python.cc:1041:5: note: in expansion of macro ‘HANDLE_NUMPY_ARRAY’
1041 | HANDLE_NUMPY_ARRAY \
| ^~~~~~~~~~~~~~~~~~
/tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/binding/source/conversions_python.cc:1241:5: note: in expansion of macro ‘PYOBJ2VARIANT’
1241 | PYOBJ2VARIANT(return variant,,throw_error)
| ^~~~~~~~~~~~~
In file included from /usr/lib64/python3.8/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib64/python3.8/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from /tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/src/tools/../../binding/include/swigconvert_python.h:5,
from /tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/binding/source/conversions_python.cc:3:
/usr/lib64/python3.8/site-packages/numpy/core/include/numpy/ndarraytypes.h:84:21: note: declared here
84 | NPY_CHAR NPY_ATTR_DEPRECATE("Use NPY_STRING"),
| ^~~~~~~~
In file included from /data/install/include/casacpp/synthesis/Utilities/FFT2D.h:31,
from /data/install/include/casacpp/synthesis/TransformMachines/FTMachine.h:48,
from /data/install/include/casacpp/synthesis/MeasurementEquations/Imager.h:44,
from /tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/src/tools/linearmosaic/linearmosaic_cmpt.cc:17:
/data/install/include/casacore/scimath/Mathematics/FFTPack.h:42:2: warning: #warning "FFTPack is deprecated and will be removed in a future version of casacore. Please use FFTW." [-Wcpp]
42 | #warning "FFTPack is deprecated and will be removed in a future version of casacore. Please use FFTW."
| ^~~~~~~
In file included from /usr/lib64/python3.8/site-packages/numpy/core/include/numpy/ndarraytypes.h:1830,
from /usr/lib64/python3.8/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib64/python3.8/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from /tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/src/tools/tablerow/tablerow_cmpt.cc:32:
/usr/lib64/python3.8/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
In file included from /data/install/include/casacpp/synthesis/Utilities/FFT2D.h:31,
from /data/install/include/casacpp/synthesis/TransformMachines/FTMachine.h:48,
from /data/install/include/casacpp/synthesis/MeasurementEquations/Imager.h:44,
from /data/install/include/casacpp/synthesis/MeasurementEquations/ImagerMultiMS.h:31,
from /tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/src/tools/imager/imager_cmpt.cc:17:
/data/install/include/casacore/scimath/Mathematics/FFTPack.h:42:2: warning: #warning "FFTPack is deprecated and will be removed in a future version of casacore. Please use FFTW." [-Wcpp]
42 | #warning "FFTPack is deprecated and will be removed in a future version of casacore. Please use FFTW."
| ^~~~~~~
In file included from /data/install/include/casacpp/synthesis/Utilities/FFT2D.h:31,
from /data/install/include/casacpp/synthesis/TransformMachines/FTMachine.h:48,
from /data/install/include/casacpp/synthesis/ImagerObjects/SIMapper.h:40,
from /data/install/include/casacpp/synthesis/ImagerObjects/SIMapperCollection.h:38,
from /data/install/include/casacpp/synthesis/ImagerObjects/SynthesisImager.h:39,
from /tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/src/tools/synthesisimager/synthesisimager_cmpt.cc:22:
/data/install/include/casacore/scimath/Mathematics/FFTPack.h:42:2: warning: #warning "FFTPack is deprecated and will be removed in a future version of casacore. Please use FFTW." [-Wcpp]
42 | #warning "FFTPack is deprecated and will be removed in a future version of casacore. Please use FFTW."
| ^~~~~~~
2022-10-28 14:16:08 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:08 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:08 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:08 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:08 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:08 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:08 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:08 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:08 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:08 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:08 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:08 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:08 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:08 INFO MS2ASDM::writeFeed() Filled Feed table uid://S002/X1/Xb with 16 rows ...
2022-10-28 14:16:08 INFO MS2ASDM::writeDataDescription() Filled DataDescription table uid://S002/X1/Xc with 1 rows ...
2022-10-28 14:16:08 INFO MS2ASDM::writeSwitchCycle() PHASE_ID column doesn't exist in MS Main table.
2022-10-28 14:16:08 INFO MS2ASDM::writeSwitchCycle()+ Filled ASDM SwitchCycle table uid://S002/X1/Xd with one dummy entry.
2022-10-28 14:16:08 WARN MS2ASDM::writeState() MS State table is empty. Creating ASDM State table with one on-source entry.
2022-10-28 14:16:08 INFO MS2ASDM::writeState() Filled State table uid://S002/X1/Xe with 1 rows ...
2022-10-28 14:16:08 WARN MS2ASDM::writeSysCal() MS SysCal table doesn't exist or is empty. Creating ASDM SysCal table with default entries.
2022-10-28 14:16:08 INFO MS2ASDM::writeSysCal() Filled SysCal table uid://S002/X1/Xf with 16 rows ...
2022-10-28 14:16:08 WARN MS2ASDM::writeConfigDesc() MS Processor table is empty. Will assume processor type is CORRELATOR.
2022-10-28 14:16:08 WARN MS2ASDM::writeConfigDesc() Still, the MS Main table seems to refer to an existing processor id 0. Will try to proceed ...
2022-10-28 14:16:08 INFO MS2ASDM::writeConfigDesc() Processor Id: 0
2022-10-28 14:16:08 INFO MS2ASDM::writeConfigDesc() Filled ConfigDescription table uid://S002/X1/X10 with 1 rows ...
2022-10-28 14:16:08 INFO MS2ASDM::writeSBSummaryAndExecBlockStubs() Using tabulated observatory position for ALMA:
2022-10-28 14:16:08 INFO MS2ASDM::writeSBSummaryAndExecBlockStubs() Position: [1761.87, -4307.63, -1977.71] (WGS84)
2022-10-28 14:16:08 INFO MS2ASDM::writeSBSummaryAndExecBlockStubs() Filled SBSummary table uid://S002/X1/X35 with 36 rows ...
2022-10-28 14:16:08 INFO MS2ASDM::writeSBSummaryAndExecBlockStubs() Filled ExecBlock table uid://S002/X1/X36 with 36 rows ...
2022-10-28 14:16:08 INFO MS2ASDM::writeMainAndScanAndSubScan() Using column DATA.
2022-10-28 14:16:08 INFO MS2ASDM::writeMainAndScanAndSubScan() Filled Main table uid://S002/X1/X5b with 36 rows ...
2022-10-28 14:16:08 INFO MS2ASDM::writeMainAndScanAndSubScan() Filled Scan table uid://S002/X1/X5c with 36 rows ...
2022-10-28 14:16:08 INFO MS2ASDM::writeMainAndScanAndSubScan() Filled SubScan table uid://S002/X1/X5d with 36 rows ...
2022-10-28 14:16:08 INFO MS2ASDM::writePointingModel() Filled PointingModel table uid://S002/X1/X5e with 32 rows ...
2022-10-28 14:16:08 WARN MS2ASDM::writePointing() No ENCODER column in MS Pointing table. Will use DIRECTION instead.
2022-10-28 14:16:08 INFO MS2ASDM::writePointing() Filled Pointing table uid://S002/X1/X5f with 16 rows ...
2022-10-28 14:16:11 INFO MS2ASDM::writeASDM() Converting /data/source/casa6/casatestutils/nosedir/test_tool_sdm_toms/myinput.ms to ASDM exportasdm-output.asdm
2022-10-28 14:16:11 INFO MS2ASDM::writeASDM()+ UID base is uid://S002/X1/X, ASDM UID is uid://S002/X1/X1
2022-10-28 14:16:11 INFO MS2ASDM::writeStation() Filled Station table uid://S002/X1/X2 with 16 rows ...
2022-10-28 14:16:11 INFO MS2ASDM::writeAntenna() Filled Antenna table uid://S002/X1/X3 with 16 rows ...
2022-10-28 14:16:11 INFO MS2ASDM::writeSpectralWindow() Filled SpectralWindow table uid://S002/X1/X4 with 1 rows ...
2022-10-28 14:16:11 INFO MS2ASDM::writeSource() Filled Source table uid://S002/X1/X5 with 1 rows ...
2022-10-28 14:16:11 INFO MS2ASDM::writePolarization() Filled Polarization table uid://S002/X1/X6 with 1 rows ...
2022-10-28 14:16:11 WARN MS2ASDM::writeProcessor() MS Processor table is empty. Will try to proceed assuming a standard ALMA Correlator.
2022-10-28 14:16:11 INFO MS2ASDM::writeCorrelatorMode() Filled CorrelatorMode table uid://S002/X1/X7 with 1 rows ...
2022-10-28 14:16:11 INFO MS2ASDM::writeProcessor() Filled Processor table uid://S002/X1/X8 with 1 rows ...
2022-10-28 14:16:11 INFO MS2ASDM::writeField() Filled Field table uid://S002/X1/X9 with 1 rows ...
2022-10-28 14:16:11 INFO MS2ASDM::writeReceiver() Taking validity time interval for all ASDM Receiver table entries from row 0 of MS Feed table.
2022-10-28 14:16:11 INFO MS2ASDM::writeReceiver() Filled Receiver table uid://S002/X1/Xa with 1 rows ...
2022-10-28 14:16:11 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:11 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:11 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:11 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:11 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:11 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:11 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:11 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:11 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:11 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:11 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:11 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:11 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:11 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:11 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:11 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:11 INFO MS2ASDM::writeFeed() Filled Feed table uid://S002/X1/Xb with 16 rows ...
2022-10-28 14:16:11 INFO MS2ASDM::writeDataDescription() Filled DataDescription table uid://S002/X1/Xc with 1 rows ...
2022-10-28 14:16:11 INFO MS2ASDM::writeSwitchCycle() PHASE_ID column doesn't exist in MS Main table.
2022-10-28 14:16:11 INFO MS2ASDM::writeSwitchCycle()+ Filled ASDM SwitchCycle table uid://S002/X1/Xd with one dummy entry.
2022-10-28 14:16:11 WARN MS2ASDM::writeState() MS State table is empty. Creating ASDM State table with one on-source entry.
2022-10-28 14:16:11 INFO MS2ASDM::writeState() Filled State table uid://S002/X1/Xe with 1 rows ...
2022-10-28 14:16:11 WARN MS2ASDM::writeSysCal() MS SysCal table doesn't exist or is empty. Creating ASDM SysCal table with default entries.
2022-10-28 14:16:11 INFO MS2ASDM::writeSysCal() Filled SysCal table uid://S002/X1/Xf with 16 rows ...
2022-10-28 14:16:11 WARN MS2ASDM::writeConfigDesc() MS Processor table is empty. Will assume processor type is CORRELATOR.
2022-10-28 14:16:11 WARN MS2ASDM::writeConfigDesc() Still, the MS Main table seems to refer to an existing processor id 0. Will try to proceed ...
2022-10-28 14:16:11 INFO MS2ASDM::writeConfigDesc() Processor Id: 0
2022-10-28 14:16:11 INFO MS2ASDM::writeConfigDesc() Filled ConfigDescription table uid://S002/X1/X10 with 1 rows ...
2022-10-28 14:16:11 INFO MS2ASDM::writeSBSummaryAndExecBlockStubs() Using tabulated observatory position for ALMA:
2022-10-28 14:16:11 INFO MS2ASDM::writeSBSummaryAndExecBlockStubs() Position: [1761.87, -4307.63, -1977.71] (WGS84)
2022-10-28 14:16:12 INFO MS2ASDM::writeSBSummaryAndExecBlockStubs() Filled SBSummary table uid://S002/X1/X35 with 36 rows ...
2022-10-28 14:16:12 INFO MS2ASDM::writeSBSummaryAndExecBlockStubs() Filled ExecBlock table uid://S002/X1/X36 with 36 rows ...
2022-10-28 14:16:12 INFO MS2ASDM::writeMainAndScanAndSubScan() Using column DATA.
2022-10-28 14:16:12 INFO MS2ASDM::writeMainAndScanAndSubScan() Filled Main table uid://S002/X1/X5b with 36 rows ...
2022-10-28 14:16:12 INFO MS2ASDM::writeMainAndScanAndSubScan() Filled Scan table uid://S002/X1/X5c with 36 rows ...
2022-10-28 14:16:12 INFO MS2ASDM::writeMainAndScanAndSubScan() Filled SubScan table uid://S002/X1/X5d with 36 rows ...
2022-10-28 14:16:12 INFO MS2ASDM::writePointingModel() Filled PointingModel table uid://S002/X1/X5e with 32 rows ...
2022-10-28 14:16:12 WARN MS2ASDM::writePointing() No ENCODER column in MS Pointing table. Will use DIRECTION instead.
2022-10-28 14:16:12 INFO MS2ASDM::writePointing() Filled Pointing table uid://S002/X1/X5f with 16 rows ...
2022-10-28 14:16:23 INFO calibrater::open ****Using NEW VI2-driven calibrater tool****
2022-10-28 14:16:23 INFO calibrater::open Opening MS: uid___A002_X72bc38_X000.ms for calibration.
2022-10-28 14:16:23 INFO Clearing all model records in MS header.
2022-10-28 14:16:23 INFO VisSetUtil::addScrCols Adding MODEL_DATA and CORRECTED_DATA column(s).
2022-10-28 14:16:23 INFO VisSetUtil::initScrCols Initializing MODEL_DATA to (unity) and CORRECTED_DATA (to DATA).
2022-10-28 14:16:23 INFO VisSetUtil::initScrCols Initialized 101520 rows.
2022-10-28 14:16:23 INFO Calibrater:: Initializing nominal selection to the whole MS.
2022-10-28 14:17:59 INFO ms::asdmref Present ASDM reference path:
2022-10-28 14:17:59 INFO ms::asdmref+ /data/source/casa6/casatestutils/nosedir/test_tool_sdm_toms/uid___A002_X71e4ae_X317_short
2022-10-28 14:17:59 WARN ms::asdmref "./moved_uid___A002_X71e4ae_X317_short/" is presently not a valid path ...
2022-10-28 14:17:59 INFO ms::asdmref New ASDM reference path:
2022-10-28 14:17:59 INFO ms::asdmref+ ./moved_uid___A002_X71e4ae_X317_short
Failed to execute plugin 'Docker Container Cleanup' with error: Error running Docker remove command
com.atlassian.bamboo.docker.DockerException: Error running Docker remove command
at com.atlassian.bamboo.docker.DockerContainerServiceImpl.remove(DockerContainerServiceImpl.java:267)
at sun.reflect.GeneratedMethodAccessor57.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at com.atlassian.plugin.util.ContextClassLoaderSettingInvocationHandler.invoke(ContextClassLoaderSettingInvocationHandler.java:26)
at com.sun.proxy.$Proxy97.remove(Unknown Source)
at sun.reflect.GeneratedMethodAccessor57.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:344)
at org.eclipse.gemini.blueprint.service.importer.support.internal.aop.ServiceInvoker.doInvoke(ServiceInvoker.java:56)
at org.eclipse.gemini.blueprint.service.importer.support.internal.aop.ServiceInvoker.invoke(ServiceInvoker.java:60)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:186)
at org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:137)
at org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:124)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:186)
at org.eclipse.gemini.blueprint.service.util.internal.aop.ServiceTCCLInterceptor.invokeUnprivileged(ServiceTCCLInterceptor.java:70)
at org.eclipse.gemini.blueprint.service.util.internal.aop.ServiceTCCLInterceptor.invoke(ServiceTCCLInterceptor.java:53)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:186)
at org.eclipse.gemini.blueprint.service.importer.support.LocalBundleContextAdvice.invoke(LocalBundleContextAdvice.java:57)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:186)
at org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:137)
at org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:124)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:186)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:215)
at com.sun.proxy.$Proxy132.remove(Unknown Source)
at com.atlassian.bamboo.plugins.docker.client.DockerCmd.remove(DockerCmd.java:78)
at com.atlassian.bamboo.plugins.docker.DockerContainerCleanupProcessor.call(DockerContainerCleanupProcessor.java:55)
at com.atlassian.bamboo.build.pipeline.tasks.ExecuteBuildTask.performCustomBuildProcess(ExecuteBuildTask.java:139)
at com.atlassian.bamboo.build.pipeline.tasks.ExecuteBuildTask.call(ExecuteBuildTask.java:79)
at com.atlassian.bamboo.v2.build.agent.DefaultBuildAgent.executeBuildPhase(DefaultBuildAgent.java:190)
at com.atlassian.bamboo.v2.build.agent.DefaultBuildAgent.build(DefaultBuildAgent.java:162)
at com.atlassian.bamboo.v2.build.agent.BuildAgentControllerImpl.lambda$waitAndPerformBuild$0(BuildAgentControllerImpl.java:137)
at com.atlassian.bamboo.variable.CustomVariableContextImpl.withVariableSubstitutor(CustomVariableContextImpl.java:118)
at com.atlassian.bamboo.v2.build.agent.BuildAgentControllerImpl.waitAndPerformBuild(BuildAgentControllerImpl.java:130)
at com.atlassian.bamboo.v2.build.agent.DefaultBuildAgent.lambda$start$0(DefaultBuildAgent.java:110)
at com.atlassian.bamboo.utils.BambooRunnables$1.run(BambooRunnables.java:48)
at com.atlassian.bamboo.security.ImpersonationHelper.runWith(ImpersonationHelper.java:26)
at com.atlassian.bamboo.security.ImpersonationHelper.runWithSystemAuthority(ImpersonationHelper.java:17)
at com.atlassian.bamboo.security.ImpersonationHelper$1.run(ImpersonationHelper.java:41)
at java.lang.Thread.run(Thread.java:750)
Caused by: com.atlassian.utils.process.ProcessException: Error executing /bin/docker rm -f build_container
at com.atlassian.bamboo.docker.DockerContainerServiceImpl.execute(DockerContainerServiceImpl.java:306)
at com.atlassian.bamboo.docker.DockerContainerServiceImpl.execute(DockerContainerServiceImpl.java:277)
at com.atlassian.bamboo.docker.DockerContainerServiceImpl.remove(DockerContainerServiceImpl.java:265)
... 40 more
Build was manually stopped.
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Checking out files: 100% (9116/9116), done.
Switched to a new branch 'CAS-13970'
Switched to a new branch 'CAS-13970'
--2022-10-28 12:52:51-- https://github.com/tnakazato/sakura/archive/refs/tags/libsakura-5.1.3.tar.gz
Resolving github.com (github.com)... 140.82.113.3
Connecting to github.com (github.com)|140.82.113.3|:443... connected.
HTTP request sent, awaiting response... 302 Found
Location: https://codeload.github.com/tnakazato/sakura/tar.gz/refs/tags/libsakura-5.1.3 [following]
--2022-10-28 12:52:52-- https://codeload.github.com/tnakazato/sakura/tar.gz/refs/tags/libsakura-5.1.3
Resolving codeload.github.com (codeload.github.com)... 140.82.113.9
Connecting to codeload.github.com (codeload.github.com)|140.82.113.9|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: unspecified [application/x-gzip]
Saving to: ‘libsakura-5.1.3.tar.gz’
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2022-10-28 12:52:52 (4.60 MB/s) - ‘libsakura-5.1.3.tar.gz’ saved [461218]
CMake Deprecation Warning at CMakeLists.txt:24 (cmake_minimum_required):
Compatibility with CMake < 2.8.12 will be removed from a future version of
CMake.
Update the VERSION argument <min> value or use a ...<max> suffix to tell
CMake that the project does not need compatibility with older versions.
CMake Deprecation Warning at src/CMakeLists.txt:24 (cmake_minimum_required):
Compatibility with CMake < 2.8.12 will be removed from a future version of
CMake.
Update the VERSION argument <min> value or use a ...<max> suffix to tell
CMake that the project does not need compatibility with older versions.
CMake Warning (dev) at src/CMakeLists.txt:26 (project):
Policy CMP0048 is not set: project() command manages VERSION variables.
Run "cmake --help-policy CMP0048" for policy details. Use the cmake_policy
command to set the policy and suppress this warning.
The following variable(s) would be set to empty:
libsakura_VERSION_MAJOR
libsakura_VERSION_MINOR
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at /opt/_internal/pipx/venvs/cmake/lib/python3.9/site-packages/cmake/data/share/cmake-3.24/Modules/FindPackageHandleStandardArgs.cmake:438 (message):
The package name passed to `find_package_handle_standard_args` (EIGEN3)
does not match the name of the calling package (Eigen3). This can lead to
problems in calling code that expects `find_package` result variables
(e.g., `_FOUND`) to follow a certain pattern.
Call Stack (most recent call first):
cmake-modules/FindEigen3.cmake:16 (find_package_handle_standard_args)
src/CMakeLists.txt:29 (find_package)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at /opt/_internal/pipx/venvs/cmake/lib/python3.9/site-packages/cmake/data/share/cmake-3.24/Modules/FindPackageHandleStandardArgs.cmake:438 (message):
The package name passed to `find_package_handle_standard_args` (LOG4CXX)
does not match the name of the calling package (Log4Cxx). This can lead to
problems in calling code that expects `find_package` result variables
(e.g., `_FOUND`) to follow a certain pattern.
Call Stack (most recent call first):
cmake-modules/FindLog4Cxx.cmake:5 (FIND_PACKAGE_HANDLE_STANDARD_ARGS)
src/CMakeLists.txt:30 (find_package)
This warning is for project developers. Use -Wno-dev to suppress it.
CMAKE_BUILD_TYPE is
CMAKE_CXX_COMPILER_ID is GNU
SIMD_ARCH is GENERIC
CMAKE_CXX_FLAGS is -I/data/build/sakurabuild/bin -I/data/source/sakurasource/sakura-libsakura-5.1.3/libsakura/src -std=c++11 -I/usr/include/eigen3 -I/usr/include -m64 -Wall -Wno-deprecated-register -fPIC -pipe
default CMAKE_CXX_FLAGS_RELEASE is -O3 -DNDEBUG
default CMAKE_CXX_FLAGS_DEBUG is -g
CMAKE_CXX_FLAGS_RELEASE was set to -funroll-all-loops -O3 -DNDEBUG
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
2 19.4M 2 436k 0 0 227k 0 0:01:27 0:00:01 0:01:26 227k
63 19.4M 63 12.2M 0 0 4389k 0 0:00:04 0:00:02 0:00:02 4388k
96 19.4M 96 18.7M 0 0 4892k 0 0:00:04 0:00:03 0:00:01 4890k
100 19.4M 100 19.4M 0 0 4043k 0 0:00:04 0:00:04 --:--:-- 4042k
Boost testing framework not found.
CASACPP version: 6.5.3.9
In file included from /usr/lib64/python3.8/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib64/python3.8/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from /tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/src/tools/../../binding/include/swigconvert_python.h:5,
from /tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/binding/source/conversions_python.cc:3:
/usr/lib64/python3.8/site-packages/numpy/core/include/numpy/ndarraytypes.h:84:21: note: declared here
84 | NPY_CHAR NPY_ATTR_DEPRECATE("Use NPY_STRING"),
| ^~~~~~~~
/tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/binding/source/conversions_python.cc: In function ‘void casac::numpy2vector(PyArrayObject*, std::vector<casac::complex>&, std::vector<long int>&)’:
/tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/binding/source/conversions_python.cc:308:10: warning: ‘NPY_CHAR’ is deprecated: Use NPY_STRING [-Wdeprecated-declarations]
308 | case NPY_CHAR: \
| ^~~~~~~~
/tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/binding/source/conversions_python.cc:353:1: note: in expansion of macro ‘NUMPY2VECTOR’
353 | NUMPY2VECTOR(casac::complex,casac::complex,npy_cdouble,(PyArray_TYPE((PyArrayObject*)obj) == NPY_CDOUBLE),? 1 : 0,COPY_CCOMPLEX,stringtoccomplex,CPXTOCCOMPLEX,DOCOMPLEX,,,,,(*to).re = (*from).real; (*to).im = (*from).imag,1)
| ^~~~~~~~~~~~
In file included from /usr/lib64/python3.8/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib64/python3.8/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from /tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/src/tools/../../binding/include/swigconvert_python.h:5,
from /tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/binding/source/conversions_python.cc:3:
/usr/lib64/python3.8/site-packages/numpy/core/include/numpy/ndarraytypes.h:84:21: note: declared here
84 | NPY_CHAR NPY_ATTR_DEPRECATE("Use NPY_STRING"),
| ^~~~~~~~
/tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/binding/source/conversions_python.cc: In function ‘void casac::numpy2vector(PyArrayObject*, std::vector<std::__cxx11::basic_string<char> >&, std::vector<long int>&)’:
/tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/binding/source/conversions_python.cc:308:10: warning: ‘NPY_CHAR’ is deprecated: Use NPY_STRING [-Wdeprecated-declarations]
308 | case NPY_CHAR: \
| ^~~~~~~~
/tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/binding/source/conversions_python.cc:354:1: note: in expansion of macro ‘NUMPY2VECTOR’
354 | NUMPY2VECTOR(std::string,char,const char,(false),,COPY_PYNSTRING,,,NODOCOMPLEX,booltostring,inttostring,doubletostring,complextostring,*to = *from,itemsize)
| ^~~~~~~~~~~~
In file included from /usr/lib64/python3.8/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib64/python3.8/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from /tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/src/tools/../../binding/include/swigconvert_python.h:5,
from /tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/binding/source/conversions_python.cc:3:
/usr/lib64/python3.8/site-packages/numpy/core/include/numpy/ndarraytypes.h:84:21: note: declared here
84 | NPY_CHAR NPY_ATTR_DEPRECATE("Use NPY_STRING"),
| ^~~~~~~~
/tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/binding/source/conversions_python.cc: In function ‘void casac::pyobj2variant(PyObject*, casac::variant&)’:
/tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/binding/source/conversions_python.cc:766:10: warning: ‘NPY_CHAR’ is deprecated: Use NPY_STRING [-Wdeprecated-declarations]
766 | case NPY_CHAR: \
| ^~~~~~~~
/tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/binding/source/conversions_python.cc:1041:5: note: in expansion of macro ‘HANDLE_NUMPY_ARRAY’
1041 | HANDLE_NUMPY_ARRAY \
| ^~~~~~~~~~~~~~~~~~
/tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/binding/source/conversions_python.cc:1086:5: note: in expansion of macro ‘PYOBJ2VARIANT’
1086 | PYOBJ2VARIANT(result.push,,false)
| ^~~~~~~~~~~~~
In file included from /usr/lib64/python3.8/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib64/python3.8/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from /tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/src/tools/../../binding/include/swigconvert_python.h:5,
from /tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/binding/source/conversions_python.cc:3:
/usr/lib64/python3.8/site-packages/numpy/core/include/numpy/ndarraytypes.h:84:21: note: declared here
84 | NPY_CHAR NPY_ATTR_DEPRECATE("Use NPY_STRING"),
| ^~~~~~~~
/tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/binding/source/conversions_python.cc: In function ‘casac::variant casac::pyobj2variant(PyObject*, bool)’:
/tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/binding/source/conversions_python.cc:766:10: warning: ‘NPY_CHAR’ is deprecated: Use NPY_STRING [-Wdeprecated-declarations]
766 | case NPY_CHAR: \
| ^~~~~~~~
/tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/binding/source/conversions_python.cc:1041:5: note: in expansion of macro ‘HANDLE_NUMPY_ARRAY’
1041 | HANDLE_NUMPY_ARRAY \
| ^~~~~~~~~~~~~~~~~~
/tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/binding/source/conversions_python.cc:1241:5: note: in expansion of macro ‘PYOBJ2VARIANT’
1241 | PYOBJ2VARIANT(return variant,,throw_error)
| ^~~~~~~~~~~~~
In file included from /usr/lib64/python3.8/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib64/python3.8/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from /tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/src/tools/../../binding/include/swigconvert_python.h:5,
from /tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/binding/source/conversions_python.cc:3:
/usr/lib64/python3.8/site-packages/numpy/core/include/numpy/ndarraytypes.h:84:21: note: declared here
84 | NPY_CHAR NPY_ATTR_DEPRECATE("Use NPY_STRING"),
| ^~~~~~~~
In file included from /data/install/include/casacpp/synthesis/Utilities/FFT2D.h:31,
from /data/install/include/casacpp/synthesis/TransformMachines/FTMachine.h:48,
from /data/install/include/casacpp/synthesis/MeasurementEquations/Imager.h:44,
from /tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/src/tools/linearmosaic/linearmosaic_cmpt.cc:17:
/data/install/include/casacore/scimath/Mathematics/FFTPack.h:42:2: warning: #warning "FFTPack is deprecated and will be removed in a future version of casacore. Please use FFTW." [-Wcpp]
42 | #warning "FFTPack is deprecated and will be removed in a future version of casacore. Please use FFTW."
| ^~~~~~~
In file included from /usr/lib64/python3.8/site-packages/numpy/core/include/numpy/ndarraytypes.h:1830,
from /usr/lib64/python3.8/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib64/python3.8/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from /tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/src/tools/tablerow/tablerow_cmpt.cc:32:
/usr/lib64/python3.8/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
In file included from /data/install/include/casacpp/synthesis/Utilities/FFT2D.h:31,
from /data/install/include/casacpp/synthesis/TransformMachines/FTMachine.h:48,
from /data/install/include/casacpp/synthesis/MeasurementEquations/Imager.h:44,
from /data/install/include/casacpp/synthesis/MeasurementEquations/ImagerMultiMS.h:31,
from /tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/src/tools/imager/imager_cmpt.cc:17:
/data/install/include/casacore/scimath/Mathematics/FFTPack.h:42:2: warning: #warning "FFTPack is deprecated and will be removed in a future version of casacore. Please use FFTW." [-Wcpp]
42 | #warning "FFTPack is deprecated and will be removed in a future version of casacore. Please use FFTW."
| ^~~~~~~
In file included from /data/install/include/casacpp/synthesis/Utilities/FFT2D.h:31,
from /data/install/include/casacpp/synthesis/TransformMachines/FTMachine.h:48,
from /data/install/include/casacpp/synthesis/ImagerObjects/SIMapper.h:40,
from /data/install/include/casacpp/synthesis/ImagerObjects/SIMapperCollection.h:38,
from /data/install/include/casacpp/synthesis/ImagerObjects/SynthesisImager.h:39,
from /tmp/build-via-sdist-nakfr2m_/casatools-6.5.3.9a13970.dev1/src/tools/synthesisimager/synthesisimager_cmpt.cc:22:
/data/install/include/casacore/scimath/Mathematics/FFTPack.h:42:2: warning: #warning "FFTPack is deprecated and will be removed in a future version of casacore. Please use FFTW." [-Wcpp]
42 | #warning "FFTPack is deprecated and will be removed in a future version of casacore. Please use FFTW."
| ^~~~~~~
2022-10-28 14:16:08 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:08 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:08 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:08 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:08 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:08 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:08 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:08 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:08 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:08 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:08 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:08 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:08 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:08 INFO MS2ASDM::writeFeed() Filled Feed table uid://S002/X1/Xb with 16 rows ...
2022-10-28 14:16:08 INFO MS2ASDM::writeDataDescription() Filled DataDescription table uid://S002/X1/Xc with 1 rows ...
2022-10-28 14:16:08 INFO MS2ASDM::writeSwitchCycle() PHASE_ID column doesn't exist in MS Main table.
2022-10-28 14:16:08 INFO MS2ASDM::writeSwitchCycle()+ Filled ASDM SwitchCycle table uid://S002/X1/Xd with one dummy entry.
2022-10-28 14:16:08 WARN MS2ASDM::writeState() MS State table is empty. Creating ASDM State table with one on-source entry.
2022-10-28 14:16:08 INFO MS2ASDM::writeState() Filled State table uid://S002/X1/Xe with 1 rows ...
2022-10-28 14:16:08 WARN MS2ASDM::writeSysCal() MS SysCal table doesn't exist or is empty. Creating ASDM SysCal table with default entries.
2022-10-28 14:16:08 INFO MS2ASDM::writeSysCal() Filled SysCal table uid://S002/X1/Xf with 16 rows ...
2022-10-28 14:16:08 WARN MS2ASDM::writeConfigDesc() MS Processor table is empty. Will assume processor type is CORRELATOR.
2022-10-28 14:16:08 WARN MS2ASDM::writeConfigDesc() Still, the MS Main table seems to refer to an existing processor id 0. Will try to proceed ...
2022-10-28 14:16:08 INFO MS2ASDM::writeConfigDesc() Processor Id: 0
2022-10-28 14:16:08 INFO MS2ASDM::writeConfigDesc() Filled ConfigDescription table uid://S002/X1/X10 with 1 rows ...
2022-10-28 14:16:08 INFO MS2ASDM::writeSBSummaryAndExecBlockStubs() Using tabulated observatory position for ALMA:
2022-10-28 14:16:08 INFO MS2ASDM::writeSBSummaryAndExecBlockStubs() Position: [1761.87, -4307.63, -1977.71] (WGS84)
2022-10-28 14:16:08 INFO MS2ASDM::writeSBSummaryAndExecBlockStubs() Filled SBSummary table uid://S002/X1/X35 with 36 rows ...
2022-10-28 14:16:08 INFO MS2ASDM::writeSBSummaryAndExecBlockStubs() Filled ExecBlock table uid://S002/X1/X36 with 36 rows ...
2022-10-28 14:16:08 INFO MS2ASDM::writeMainAndScanAndSubScan() Using column DATA.
2022-10-28 14:16:08 INFO MS2ASDM::writeMainAndScanAndSubScan() Filled Main table uid://S002/X1/X5b with 36 rows ...
2022-10-28 14:16:08 INFO MS2ASDM::writeMainAndScanAndSubScan() Filled Scan table uid://S002/X1/X5c with 36 rows ...
2022-10-28 14:16:08 INFO MS2ASDM::writeMainAndScanAndSubScan() Filled SubScan table uid://S002/X1/X5d with 36 rows ...
2022-10-28 14:16:08 INFO MS2ASDM::writePointingModel() Filled PointingModel table uid://S002/X1/X5e with 32 rows ...
2022-10-28 14:16:08 WARN MS2ASDM::writePointing() No ENCODER column in MS Pointing table. Will use DIRECTION instead.
2022-10-28 14:16:08 INFO MS2ASDM::writePointing() Filled Pointing table uid://S002/X1/X5f with 16 rows ...
2022-10-28 14:16:11 INFO MS2ASDM::writeASDM() Converting /data/source/casa6/casatestutils/nosedir/test_tool_sdm_toms/myinput.ms to ASDM exportasdm-output.asdm
2022-10-28 14:16:11 INFO MS2ASDM::writeASDM()+ UID base is uid://S002/X1/X, ASDM UID is uid://S002/X1/X1
2022-10-28 14:16:11 INFO MS2ASDM::writeStation() Filled Station table uid://S002/X1/X2 with 16 rows ...
2022-10-28 14:16:11 INFO MS2ASDM::writeAntenna() Filled Antenna table uid://S002/X1/X3 with 16 rows ...
2022-10-28 14:16:11 INFO MS2ASDM::writeSpectralWindow() Filled SpectralWindow table uid://S002/X1/X4 with 1 rows ...
2022-10-28 14:16:11 INFO MS2ASDM::writeSource() Filled Source table uid://S002/X1/X5 with 1 rows ...
2022-10-28 14:16:11 INFO MS2ASDM::writePolarization() Filled Polarization table uid://S002/X1/X6 with 1 rows ...
2022-10-28 14:16:11 WARN MS2ASDM::writeProcessor() MS Processor table is empty. Will try to proceed assuming a standard ALMA Correlator.
2022-10-28 14:16:11 INFO MS2ASDM::writeCorrelatorMode() Filled CorrelatorMode table uid://S002/X1/X7 with 1 rows ...
2022-10-28 14:16:11 INFO MS2ASDM::writeProcessor() Filled Processor table uid://S002/X1/X8 with 1 rows ...
2022-10-28 14:16:11 INFO MS2ASDM::writeField() Filled Field table uid://S002/X1/X9 with 1 rows ...
2022-10-28 14:16:11 INFO MS2ASDM::writeReceiver() Taking validity time interval for all ASDM Receiver table entries from row 0 of MS Feed table.
2022-10-28 14:16:11 INFO MS2ASDM::writeReceiver() Filled Receiver table uid://S002/X1/Xa with 1 rows ...
2022-10-28 14:16:11 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:11 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:11 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:11 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:11 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:11 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:11 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:11 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:11 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:11 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:11 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:11 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:11 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:11 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:11 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:11 WARN MS2ASDM::writeFeed() MS Feed table contains reference to a Beam table row 0 but a Beam table is not implemented in CASA. Ignoring.
2022-10-28 14:16:11 INFO MS2ASDM::writeFeed() Filled Feed table uid://S002/X1/Xb with 16 rows ...
2022-10-28 14:16:11 INFO MS2ASDM::writeDataDescription() Filled DataDescription table uid://S002/X1/Xc with 1 rows ...
2022-10-28 14:16:11 INFO MS2ASDM::writeSwitchCycle() PHASE_ID column doesn't exist in MS Main table.
2022-10-28 14:16:11 INFO MS2ASDM::writeSwitchCycle()+ Filled ASDM SwitchCycle table uid://S002/X1/Xd with one dummy entry.
2022-10-28 14:16:11 WARN MS2ASDM::writeState() MS State table is empty. Creating ASDM State table with one on-source entry.
2022-10-28 14:16:11 INFO MS2ASDM::writeState() Filled State table uid://S002/X1/Xe with 1 rows ...
2022-10-28 14:16:11 WARN MS2ASDM::writeSysCal() MS SysCal table doesn't exist or is empty. Creating ASDM SysCal table with default entries.
2022-10-28 14:16:11 INFO MS2ASDM::writeSysCal() Filled SysCal table uid://S002/X1/Xf with 16 rows ...
2022-10-28 14:16:11 WARN MS2ASDM::writeConfigDesc() MS Processor table is empty. Will assume processor type is CORRELATOR.
2022-10-28 14:16:11 WARN MS2ASDM::writeConfigDesc() Still, the MS Main table seems to refer to an existing processor id 0. Will try to proceed ...
2022-10-28 14:16:11 INFO MS2ASDM::writeConfigDesc() Processor Id: 0
2022-10-28 14:16:11 INFO MS2ASDM::writeConfigDesc() Filled ConfigDescription table uid://S002/X1/X10 with 1 rows ...
2022-10-28 14:16:11 INFO MS2ASDM::writeSBSummaryAndExecBlockStubs() Using tabulated observatory position for ALMA:
2022-10-28 14:16:11 INFO MS2ASDM::writeSBSummaryAndExecBlockStubs() Position: [1761.87, -4307.63, -1977.71] (WGS84)
2022-10-28 14:16:12 INFO MS2ASDM::writeSBSummaryAndExecBlockStubs() Filled SBSummary table uid://S002/X1/X35 with 36 rows ...
2022-10-28 14:16:12 INFO MS2ASDM::writeSBSummaryAndExecBlockStubs() Filled ExecBlock table uid://S002/X1/X36 with 36 rows ...
2022-10-28 14:16:12 INFO MS2ASDM::writeMainAndScanAndSubScan() Using column DATA.
2022-10-28 14:16:12 INFO MS2ASDM::writeMainAndScanAndSubScan() Filled Main table uid://S002/X1/X5b with 36 rows ...
2022-10-28 14:16:12 INFO MS2ASDM::writeMainAndScanAndSubScan() Filled Scan table uid://S002/X1/X5c with 36 rows ...
2022-10-28 14:16:12 INFO MS2ASDM::writeMainAndScanAndSubScan() Filled SubScan table uid://S002/X1/X5d with 36 rows ...
2022-10-28 14:16:12 INFO MS2ASDM::writePointingModel() Filled PointingModel table uid://S002/X1/X5e with 32 rows ...
2022-10-28 14:16:12 WARN MS2ASDM::writePointing() No ENCODER column in MS Pointing table. Will use DIRECTION instead.
2022-10-28 14:16:12 INFO MS2ASDM::writePointing() Filled Pointing table uid://S002/X1/X5f with 16 rows ...
2022-10-28 14:16:23 INFO calibrater::open ****Using NEW VI2-driven calibrater tool****
2022-10-28 14:16:23 INFO calibrater::open Opening MS: uid___A002_X72bc38_X000.ms for calibration.
2022-10-28 14:16:23 INFO Clearing all model records in MS header.
2022-10-28 14:16:23 INFO VisSetUtil::addScrCols Adding MODEL_DATA and CORRECTED_DATA column(s).
2022-10-28 14:16:23 INFO VisSetUtil::initScrCols Initializing MODEL_DATA to (unity) and CORRECTED_DATA (to DATA).
2022-10-28 14:16:23 INFO VisSetUtil::initScrCols Initialized 101520 rows.
2022-10-28 14:16:23 INFO Calibrater:: Initializing nominal selection to the whole MS.
2022-10-28 14:17:59 INFO ms::asdmref Present ASDM reference path:
2022-10-28 14:17:59 INFO ms::asdmref+ /data/source/casa6/casatestutils/nosedir/test_tool_sdm_toms/uid___A002_X71e4ae_X317_short
2022-10-28 14:17:59 WARN ms::asdmref "./moved_uid___A002_X71e4ae_X317_short/" is presently not a valid path ...
2022-10-28 14:17:59 INFO ms::asdmref New ASDM reference path:
2022-10-28 14:17:59 INFO ms::asdmref+ ./moved_uid___A002_X71e4ae_X317_short
Failed to execute plugin 'Docker Container Cleanup' with error: Error running Docker remove command
com.atlassian.bamboo.docker.DockerException: Error running Docker remove command
at com.atlassian.bamboo.docker.DockerContainerServiceImpl.remove(DockerContainerServiceImpl.java:267)
at sun.reflect.GeneratedMethodAccessor57.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at com.atlassian.plugin.util.ContextClassLoaderSettingInvocationHandler.invoke(ContextClassLoaderSettingInvocationHandler.java:26)
at com.sun.proxy.$Proxy97.remove(Unknown Source)
at sun.reflect.GeneratedMethodAccessor57.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:344)
at org.eclipse.gemini.blueprint.service.importer.support.internal.aop.ServiceInvoker.doInvoke(ServiceInvoker.java:56)
at org.eclipse.gemini.blueprint.service.importer.support.internal.aop.ServiceInvoker.invoke(ServiceInvoker.java:60)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:186)
at org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:137)
at org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:124)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:186)
at org.eclipse.gemini.blueprint.service.util.internal.aop.ServiceTCCLInterceptor.invokeUnprivileged(ServiceTCCLInterceptor.java:70)
at org.eclipse.gemini.blueprint.service.util.internal.aop.ServiceTCCLInterceptor.invoke(ServiceTCCLInterceptor.java:53)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:186)
at org.eclipse.gemini.blueprint.service.importer.support.LocalBundleContextAdvice.invoke(LocalBundleContextAdvice.java:57)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:186)
at org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:137)
at org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:124)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:186)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:215)
at com.sun.proxy.$Proxy132.remove(Unknown Source)
at com.atlassian.bamboo.plugins.docker.client.DockerCmd.remove(DockerCmd.java:78)
at com.atlassian.bamboo.plugins.docker.DockerContainerCleanupProcessor.call(DockerContainerCleanupProcessor.java:55)
at com.atlassian.bamboo.build.pipeline.tasks.ExecuteBuildTask.performCustomBuildProcess(ExecuteBuildTask.java:139)
at com.atlassian.bamboo.build.pipeline.tasks.ExecuteBuildTask.call(ExecuteBuildTask.java:79)
at com.atlassian.bamboo.v2.build.agent.DefaultBuildAgent.executeBuildPhase(DefaultBuildAgent.java:190)
at com.atlassian.bamboo.v2.build.agent.DefaultBuildAgent.build(DefaultBuildAgent.java:162)
at com.atlassian.bamboo.v2.build.agent.BuildAgentControllerImpl.lambda$waitAndPerformBuild$0(BuildAgentControllerImpl.java:137)
at com.atlassian.bamboo.variable.CustomVariableContextImpl.withVariableSubstitutor(CustomVariableContextImpl.java:118)
at com.atlassian.bamboo.v2.build.agent.BuildAgentControllerImpl.waitAndPerformBuild(BuildAgentControllerImpl.java:130)
at com.atlassian.bamboo.v2.build.agent.DefaultBuildAgent.lambda$start$0(DefaultBuildAgent.java:110)
at com.atlassian.bamboo.utils.BambooRunnables$1.run(BambooRunnables.java:48)
at com.atlassian.bamboo.security.ImpersonationHelper.runWith(ImpersonationHelper.java:26)
at com.atlassian.bamboo.security.ImpersonationHelper.runWithSystemAuthority(ImpersonationHelper.java:17)
at com.atlassian.bamboo.security.ImpersonationHelper$1.run(ImpersonationHelper.java:41)
at java.lang.Thread.run(Thread.java:750)
Caused by: com.atlassian.utils.process.ProcessException: Error executing /bin/docker rm -f build_container
at com.atlassian.bamboo.docker.DockerContainerServiceImpl.execute(DockerContainerServiceImpl.java:306)
at com.atlassian.bamboo.docker.DockerContainerServiceImpl.execute(DockerContainerServiceImpl.java:277)
at com.atlassian.bamboo.docker.DockerContainerServiceImpl.remove(DockerContainerServiceImpl.java:265)
... 40 more
Build was manually stopped.