Create casadata wheel weekly

Build: #2 did not complete

Job: Create data wheel did not complete

Stages & jobs

  1. Tag

  2. Default Stage

Build log

The build generated 300 lines of output. Download or view full build log.

31-Jan-2020 12:25:29 Build CASA - Casa Data - Build and Package RHEL6 #2 (CASA-CD-JOB1-2) started building on agent cbt-el7-10.cv.nrao.edu
31-Jan-2020 12:25:29 Remote agent on host cbt-el7-10.cv.nrao.edu
31-Jan-2020 12:25:29 Build working directory is /export/home/cbt-el7-10/bamboohome/xml-data/build-dir/CASA-CD-JOB1
31-Jan-2020 12:25:29 Executing build CASA - Casa Data - Build and Package RHEL6 #2 (CASA-CD-JOB1-2)
31-Jan-2020 12:25:29 Starting task 'Clean working directory task' of type 'com.atlassian.bamboo.plugins.bamboo-artifact-downloader-plugin:cleanWorkingDirectoryTask'
31-Jan-2020 12:25:29 Cleaning working directory '/export/home/cbt-el7-10/bamboohome/xml-data/build-dir/CASA-CD-JOB1'
31-Jan-2020 12:25:29 Finished task 'Clean working directory task' with result: Success
31-Jan-2020 12:25:29 Running pre-build action: VCS Version Collector
31-Jan-2020 12:25:29 Starting task 'Create wheeldirectory' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script'
31-Jan-2020 12:25:29
Beginning to execute external process for build 'CASA - Casa Data - Build and Package RHEL6 #2 (CASA-CD-JOB1-2)'
... running command line:
/export/home/cbt-el7-10/bamboohome/temp/CASA-CD-JOB1-2-ScriptBuildTask-2805244547846086963.sh
... in: /export/home/cbt-el7-10/bamboohome/xml-data/build-dir/CASA-CD-JOB1
... using extra environment variables:
bamboo_planRepository_1_branch=master
bamboo_capability_buildmachinetype=casa6pullrequest
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bamboo_repository_revision_number=bffefd6da545e4e4b166c10766e054d7cf2704be
bamboo_resultsUrl=https://open-bamboo.nrao.edu/browse/CASA-CD-JOB1-2
bamboo_build_working_directory=/export/home/cbt-el7-10/bamboohome/xml-data/build-dir/CASA-CD-JOB1
bamboo_planRepository_1_name=Casadata
bamboo_buildKey=CASA-CD-JOB1
bamboo_shortPlanName=Casa Data
bamboo_capability_hostname=cbt-el7-10.cv.nrao.edu
bamboo_planRepository_name=Casadata
bamboo_buildNumber=2
bamboo_shortJobName=Build and Package RHEL6
bamboo_buildResultsUrl=https://open-bamboo.nrao.edu/browse/CASA-CD-JOB1-2
bamboo_repository_39780674_name=Casadata
bamboo_planRepository_repositoryUrl=ssh://git@open-bitbucket.nrao.edu:7999/casa/casadata.git
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bamboo_repository_git_repositoryUrl=ssh://git@open-bitbucket.nrao.edu:7999/casa/casadata.git
bamboo_capability_system_builder_ant_Ant=/usr
bamboo_tmp_directory=/export/home/cbt-el7-10/bamboohome/temp
bamboo_working_directory=/export/home/cbt-el7-10/bamboohome/xml-data/build-dir/CASA-CD-JOB1
bamboo_planKey=CASA-CD
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bamboo_planRepository_1_branchName=master
31-Jan-2020 12:25:29 Finished task 'Create wheeldirectory' with result: Success
31-Jan-2020 12:25:29
Substituting variable: ${bamboo.working.directory} with /export/home/cbt-el7-10/bamboohome/xml-data/build-dir/CASA-CD-JOB1
31-Jan-2020 12:25:29 Starting task 'Pull casatools image' of type 'com.atlassian.bamboo.plugins.bamboo-docker-plugin:task.docker.cli'
31-Jan-2020 12:25:29
Beginning to execute external process for build 'CASA - Casa Data - Build and Package RHEL6 #2 (CASA-CD-JOB1-2)'
... running command line:
/bin/docker pull casa-docker.nrao.edu:5000/casa-build-tools-centos6:latest
... in: /export/home/cbt-el7-10/bamboohome/xml-data/build-dir/CASA-CD-JOB1
... using extra environment variables:
bamboo_planRepository_1_branch=master
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bamboo_planRepository_1_name=Casadata
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bamboo_shortPlanName=Casa Data
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bamboo_planRepository_name=Casadata
bamboo_buildNumber=2
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31-Jan-2020 12:25:32 latest: Pulling from casa-build-tools-centos6
31-Jan-2020 12:25:32 Digest: sha256:840f13c9286356ce3f304347e11519cabc149ab892d851b280afc88b54680df6
31-Jan-2020 12:25:32 Status: Image is up to date for casa-docker.nrao.edu:5000/casa-build-tools-centos6:latest
31-Jan-2020 12:25:32 casa-docker.nrao.edu:5000/casa-build-tools-centos6:latest
31-Jan-2020 12:25:32 Finished task 'Pull casatools image' with result: Success
31-Jan-2020 12:25:32 Starting task 'Stop and remove running wheel-container' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script'
31-Jan-2020 12:25:32
Beginning to execute external process for build 'CASA - Casa Data - Build and Package RHEL6 #2 (CASA-CD-JOB1-2)'
... running command line:
/export/home/cbt-el7-10/bamboohome/temp/CASA-CD-JOB1-2-ScriptBuildTask-196857640705749231.sh
... in: /export/home/cbt-el7-10/bamboohome/xml-data/build-dir/CASA-CD-JOB1
... using extra environment variables:
bamboo_planRepository_1_branch=master
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bamboo_build_working_directory=/export/home/cbt-el7-10/bamboohome/xml-data/build-dir/CASA-CD-JOB1
bamboo_planRepository_1_name=Casadata
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bamboo_shortJobKey=JOB1
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31-Jan-2020 12:25:32 Error response from daemon: No such container: wheel-container
31-Jan-2020 12:25:32 Error: No such container: wheel-container
31-Jan-2020 12:25:32 Removed wheel-container
31-Jan-2020 12:25:32 Finished task 'Stop and remove running wheel-container' with result: Success
31-Jan-2020 12:25:32
Substituting variable: ${bamboo.working.directory} with /export/home/cbt-el7-10/bamboohome/xml-data/build-dir/CASA-CD-JOB1
31-Jan-2020 12:25:32
Substituting variable: ${bamboo.working.directory} with /export/home/cbt-el7-10/bamboohome/xml-data/build-dir/CASA-CD-JOB1
31-Jan-2020 12:25:32 Starting task 'Start wheel-container' of type 'com.atlassian.bamboo.plugins.bamboo-docker-plugin:task.docker.cli'
31-Jan-2020 12:25:32 Running image name (casa-docker.nrao.edu:5000/casa-build-tools-centos6)
31-Jan-2020 12:25:32
Beginning to execute external process for build 'CASA - Casa Data - Build and Package RHEL6 #2 (CASA-CD-JOB1-2)'
... running command line:
/bin/docker run --volume /export/home/cbt-el7-10/bamboohome/xml-data/build-dir/CASA-CD-JOB1/wheeldirectory:/wheeldirectory --volume /export/home/cbt-el7-10/bamboohome/xml-data/build-dir/CASA-CD-JOB1/../ccache:/ccache --detach --name wheel-container casa-docker.nrao.edu:5000/casa-build-tools-centos6 tail -f /dev/null
... in: /export/home/cbt-el7-10/bamboohome/xml-data/build-dir/CASA-CD-JOB1
... using extra environment variables:
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31-Jan-2020 12:25:35 2533026c935773f3004e1b1740f1ddf8c3243e24b41bc0ba5d2f0d379a0bfe5d
31-Jan-2020 12:25:36 Finished task 'Start wheel-container' with result: Success
31-Jan-2020 12:25:36
Substituting variable: ${bamboo.repository.branch.name} with master
31-Jan-2020 12:25:36 Starting task 'Create tools wheel' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script'
31-Jan-2020 12:25:36
Beginning to execute external process for build 'CASA - Casa Data - Build and Package RHEL6 #2 (CASA-CD-JOB1-2)'
... running command line:
/export/home/cbt-el7-10/bamboohome/temp/CASA-CD-JOB1-2-ScriptBuildTask-2350008127358756206.sh
... in: /export/home/cbt-el7-10/bamboohome/xml-data/build-dir/CASA-CD-JOB1
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31-Jan-2020 12:25:54 Submodule 'casatools/casacore' (https://github.com/casacore/casacore.git) registered for path 'casatools/casacore'
31-Jan-2020 12:25:54 Submodule 'casatools/grpc-source' (https://github.com/grpc/grpc) registered for path 'casatools/grpc-source'
31-Jan-2020 12:25:55 Cloning into 'casatools/casacore'...
31-Jan-2020 12:26:11 Submodule path 'casatools/casacore': checked out '87ff9dafbd637da80cc116a51282bdfc704f11f0'
31-Jan-2020 12:26:12 Cloning into 'casatools/grpc-source'...
31-Jan-2020 12:26:48 Submodule path 'casatools/grpc-source': checked out 'cca868ac8f3641df4003a82b7fc54c921e14f765'
31-Jan-2020 12:26:48 Submodule 'third_party/abseil-cpp' (https://github.com/abseil/abseil-cpp) registered for path 'third_party/abseil-cpp'
31-Jan-2020 12:26:48 Submodule 'third_party/benchmark' (https://github.com/google/benchmark) registered for path 'third_party/benchmark'
31-Jan-2020 12:26:48 Submodule 'third_party/bloaty' (https://github.com/google/bloaty.git) registered for path 'third_party/bloaty'
31-Jan-2020 12:26:48 Submodule 'third_party/boringssl' (https://github.com/google/boringssl.git) registered for path 'third_party/boringssl'
31-Jan-2020 12:26:48 Submodule 'third_party/boringssl-with-bazel' (https://github.com/google/boringssl.git) registered for path 'third_party/boringssl-with-bazel'
31-Jan-2020 12:26:48 Submodule 'third_party/cares/cares' (https://github.com/c-ares/c-ares.git) registered for path 'third_party/cares/cares'
31-Jan-2020 12:26:48 Submodule 'third_party/gflags' (https://github.com/gflags/gflags.git) registered for path 'third_party/gflags'
31-Jan-2020 12:26:48 Submodule 'third_party/googletest' (https://github.com/google/googletest.git) registered for path 'third_party/googletest'
31-Jan-2020 12:26:48 Submodule 'third_party/protobuf' (https://github.com/google/protobuf.git) registered for path 'third_party/protobuf'
31-Jan-2020 12:26:48 Submodule 'third_party/zlib' (https://github.com/madler/zlib) registered for path 'third_party/zlib'
31-Jan-2020 12:26:49 Cloning into 'third_party/abseil-cpp'...
31-Jan-2020 12:26:50 Submodule path 'casatools/grpc-source/third_party/abseil-cpp': checked out 'cc4bed2d74f7c8717e31f9579214ab52a9c9c610'
31-Jan-2020 12:26:50 Cloning into 'third_party/benchmark'...
31-Jan-2020 12:26:51 Submodule path 'casatools/grpc-source/third_party/benchmark': checked out '5b7683f49e1e9223cf9927b24f6fd3d6bd82e3f8'
31-Jan-2020 12:26:51 Cloning into 'third_party/bloaty'...
31-Jan-2020 12:26:52 Submodule path 'casatools/grpc-source/third_party/bloaty': checked out '73594cde8c9a52a102c4341c244c833aa61b9c06'
31-Jan-2020 12:26:52 Submodule 'third_party/googletest' (https://github.com/google/googletest.git) registered for path 'third_party/googletest'
31-Jan-2020 12:26:52 Submodule 'third_party/libFuzzer' (https://chromium.googlesource.com/chromium/llvm-project/llvm/lib/Fuzzer) registered for path 'third_party/libFuzzer'
31-Jan-2020 12:26:52 Submodule 'third_party/re2' (https://github.com/google/re2) registered for path 'third_party/re2'
31-Jan-2020 12:26:52 Cloning into 'third_party/googletest'...
31-Jan-2020 12:26:54 Submodule path 'casatools/grpc-source/third_party/bloaty/third_party/googletest': checked out 'a2b8a8e07628e5fd60644b6dd99c1b5e7d7f1f47'
31-Jan-2020 12:26:55 Cloning into 'third_party/libFuzzer'...
31-Jan-2020 12:26:55 Submodule path 'casatools/grpc-source/third_party/bloaty/third_party/libFuzzer': checked out '1b543d6e5073b56be214394890c9193979a3d7e1'
31-Jan-2020 12:26:56 Cloning into 'third_party/re2'...
31-Jan-2020 12:26:57 Submodule path 'casatools/grpc-source/third_party/bloaty/third_party/re2': checked out 'c964d9b07816f9b52ca692e23b8b3dba33beec54'
31-Jan-2020 12:26:57 Cloning into 'third_party/boringssl'...
31-Jan-2020 12:27:12 Submodule path 'casatools/grpc-source/third_party/boringssl': checked out 'be2ee342d3781ddb954f91f8a7e660c6f59e87e5'
31-Jan-2020 12:27:12 Cloning into 'third_party/boringssl-with-bazel'...
31-Jan-2020 12:27:27 Submodule path 'casatools/grpc-source/third_party/boringssl-with-bazel': checked out '886e7d75368e3f4fab3f4d0d3584e4abfc557755'
31-Jan-2020 12:27:28 Cloning into 'third_party/cares/cares'...
31-Jan-2020 12:27:29 Submodule path 'casatools/grpc-source/third_party/cares/cares': checked out '3be1924221e1326df520f8498d704a5c4c8d0cce'
31-Jan-2020 12:27:30 Cloning into 'third_party/gflags'...
31-Jan-2020 12:27:30 Submodule path 'casatools/grpc-source/third_party/gflags': checked out '30dbc81fb5ffdc98ea9b14b1918bfe4e8779b26e'
31-Jan-2020 12:27:30 Submodule 'doc' (https://github.com/gflags/gflags.git) registered for path 'doc'
31-Jan-2020 12:27:30 Cloning into 'doc'...
31-Jan-2020 12:27:31 Submodule path 'casatools/grpc-source/third_party/gflags/doc': checked out '971dd2a4fadac9cdab174c523c22df79efd63aa5'
31-Jan-2020 12:27:31 Cloning into 'third_party/googletest'...
31-Jan-2020 12:27:33 Submodule path 'casatools/grpc-source/third_party/googletest': checked out 'ec44c6c1675c25b9827aacd08c02433cccde7780'
31-Jan-2020 12:27:33 Cloning into 'third_party/protobuf'...
31-Jan-2020 12:27:40 Submodule path 'casatools/grpc-source/third_party/protobuf': checked out '2761122b810fe8861004ae785cc3ab39f384d342'
31-Jan-2020 12:27:40 Submodule 'third_party/benchmark' (https://github.com/google/benchmark.git) registered for path 'third_party/benchmark'
31-Jan-2020 12:27:41 Cloning into 'third_party/benchmark'...
31-Jan-2020 12:27:42 Submodule path 'casatools/grpc-source/third_party/protobuf/third_party/benchmark': checked out '360e66c1c4777c99402cf8cd535aa510fee16573'
31-Jan-2020 12:27:42 Cloning into 'third_party/zlib'...
31-Jan-2020 12:27:43 Submodule path 'casatools/grpc-source/third_party/zlib': checked out 'cacf7f1d4e3d44d871b605da3b647f07d718623f'
31-Jan-2020 12:27:44 Set cache size limit to 50.0 Gbytes
31-Jan-2020 12:27:45 Already on 'master'
31-Jan-2020 12:27:46 Synchronizing submodule url for 'casatools/casacore'
31-Jan-2020 12:27:50 found java version 1.8
31-Jan-2020 12:27:50 configuring CASAtools... this may take a little while...
31-Jan-2020 12:28:34 configure: host os is linux
31-Jan-2020 12:28:34 checking for g++... g++
31-Jan-2020 12:28:35 checking for C++ compiler default output file name... a.out
31-Jan-2020 12:28:35 checking whether the C++ compiler works... yes
31-Jan-2020 12:28:35 checking whether we are cross compiling... no
31-Jan-2020 12:28:35 checking for suffix of executables...
31-Jan-2020 12:28:35 checking for suffix of object files... o
31-Jan-2020 12:28:35 checking whether we are using the GNU C++ compiler... yes
31-Jan-2020 12:28:35 checking whether g++ accepts -g... yes
31-Jan-2020 12:28:35 checking for OpenMP flag of C++ compiler... -fopenmp
31-Jan-2020 12:28:35 checking whether we are using the GNU C++ compiler... yes
31-Jan-2020 12:28:35 checking whether g++ accepts -g... yes
31-Jan-2020 12:28:36 checking whether g++ supports C++11 features by default... no
31-Jan-2020 12:28:36 checking whether g++ supports C++11 features with -std=c++11... yes
31-Jan-2020 12:28:36 checking for OpenMP flag of C++ compiler... -fopenmp
31-Jan-2020 12:28:36 configure: C++11 compiler /opt/rh/devtoolset-4/root/usr/bin/g++
31-Jan-2020 12:28:37 checking for std::defaultfloat... yes
31-Jan-2020 12:28:37 checking whether C++ compiler accepts -fcx-fortran-rules... yes
31-Jan-2020 12:28:37 checking for flags to support C++11 libc++... no
31-Jan-2020 12:28:37 configure: c++ compiler is /opt/rh/devtoolset-4/root/usr/bin/g++
31-Jan-2020 12:28:37 configure:  temporary directory /tmp/casatools-config-3383
31-Jan-2020 12:28:37 configure: creating /tmp/casatools-config-3383
31-Jan-2020 12:28:37 checking for gcc... gcc
31-Jan-2020 12:28:37 checking whether we are using the GNU C compiler... yes
31-Jan-2020 12:28:37 checking whether gcc accepts -g... yes
31-Jan-2020 12:28:38 checking for gcc option to accept ISO C89... none needed
31-Jan-2020 12:28:38 configure: C compiler /opt/rh/devtoolset-4/root/usr/bin/gcc
31-Jan-2020 12:28:38 checking whether C compiler accepts -fcx-fortran-rules... yes
31-Jan-2020 12:28:38 checking for gfortran-mp-5... no
31-Jan-2020 12:28:38 checking for gfortran-mp-4.9... no
31-Jan-2020 12:28:38 checking for gfortran-mp-4.8... no
31-Jan-2020 12:28:38 checking for gfortran... gfortran
31-Jan-2020 12:28:38 checking whether we are using the GNU Fortran compiler... yes
31-Jan-2020 12:28:38 checking whether gfortran accepts -g... yes
31-Jan-2020 12:28:38 configure: Fortran compiler /opt/rh/devtoolset-4/root/usr/bin/gfortran
31-Jan-2020 12:28:38 checking for ccache... /usr/bin/ccache
31-Jan-2020 12:28:38 checking for pread... yes
31-Jan-2020 12:28:38 checking for pwrite... yes
31-Jan-2020 12:28:39 checking for boostlib >= 1.41... configure: We could not detect the boost libraries (version 1.41 or higher). If you have a staged boost library (still not installed) please specify $BOOST_ROOT in your environment and do not give a PATH to --with-boost option.  If you are sure you have boost installed, then check your version number looking in <boost/version.hpp>. See http://randspringer.de/boost for more documentation.
31-Jan-2020 12:28:39 checking for python... /opt/rh/rh-python36/root/usr/bin/python
31-Jan-2020 12:28:39 checking for a version of Python >= '2.1.0'... yes
31-Jan-2020 12:28:39 checking for a version of Python >= '2.7.0'... yes
31-Jan-2020 12:28:39 checking for the distutils Python package... yes
31-Jan-2020 12:28:39 checking for Python include path... /opt/rh/rh-python36/root/usr/include/python3.6m
31-Jan-2020 12:28:39 checking for Python library path... /opt/rh/rh-python36/root/usr/lib64/libpython3.6m.so.rh-python36-1.0
31-Jan-2020 12:28:40 checking for Python site-packages path... /opt/rh/rh-python36/root/usr/lib/python3.6/site-packages
31-Jan-2020 12:28:40 checking python extra libraries... -lpthread -ldl  -lutil -lrt -lm
31-Jan-2020 12:28:40 checking python extra linking flags... -Xlinker -export-dynamic
31-Jan-2020 12:28:40 checking consistency of all components of python development environment... yes
31-Jan-2020 12:28:40 checking for python... /opt/rh/rh-python36/root/usr/bin/python
31-Jan-2020 12:28:41 checking for numpy includedir... /opt/rh/rh-python36/root/usr/lib64/python3.6/site-packages/numpy/core/include
31-Jan-2020 12:28:42 checking whether linking to numpy library works... yes
31-Jan-2020 12:28:42 checking for readline in -lreadline... yes
31-Jan-2020 12:28:42 checking for flex... flex
31-Jan-2020 12:28:42 checking lex output file root... lex.yy
31-Jan-2020 12:28:43 checking lex library... none needed
31-Jan-2020 12:28:43 checking whether yytext is a pointer... no
31-Jan-2020 12:28:43 checking for bison... bison -y
31-Jan-2020 12:28:43 checking if compiler needs -Werror to reject unknown flags... no
31-Jan-2020 12:28:43 checking for the pthreads library -lpthreads... no
31-Jan-2020 12:28:43 checking whether pthreads work without any flags... no
31-Jan-2020 12:28:43 checking whether pthreads work with -Kthread... no
31-Jan-2020 12:28:43 checking whether pthreads work with -kthread... no
31-Jan-2020 12:28:43 checking for the pthreads library -llthread... no
31-Jan-2020 12:28:43 checking whether pthreads work with -pthread... yes
31-Jan-2020 12:28:43 checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
31-Jan-2020 12:28:43 checking if more special flags are required for pthreads... no
31-Jan-2020 12:28:43 checking for PTHREAD_PRIO_INHERIT... no
31-Jan-2020 12:28:43 checking for pkg-config... /usr/bin/pkg-config
31-Jan-2020 12:28:43 checking pkg-config is at least version 0.9.0... yes
31-Jan-2020 12:28:44 checking how to run the C++ preprocessor... /opt/rh/devtoolset-4/root/usr/bin/g++ -E
31-Jan-2020 12:28:44 checking for grep that handles long lines and -e... /bin/grep
31-Jan-2020 12:28:44 checking for egrep... /bin/grep -E
31-Jan-2020 12:28:44 checking for ANSI C header files... yes
31-Jan-2020 12:28:44 checking for sys/types.h... yes
31-Jan-2020 12:28:44 checking for sys/stat.h... yes
31-Jan-2020 12:28:44 checking for stdlib.h... yes
31-Jan-2020 12:28:45 checking for string.h... yes
31-Jan-2020 12:28:45 checking for memory.h... yes
31-Jan-2020 12:28:45 checking for strings.h... yes
31-Jan-2020 12:28:45 checking for inttypes.h... yes
31-Jan-2020 12:28:45 checking for stdint.h... yes
31-Jan-2020 12:28:45 checking for unistd.h... yes
31-Jan-2020 12:28:45 checking for CFITSIO... yes
31-Jan-2020 12:28:45 checking for WCSLIB... yes
31-Jan-2020 12:28:45 checking for rpfitsin_ in -lrpfits... yes
31-Jan-2020 12:28:45 checking for gsl-config... /opt/casa/03/bin/gsl-config
31-Jan-2020 12:28:45 checking requested gsl version (2.0)... yes
31-Jan-2020 12:28:46 checking for swig... /opt/casa/03/bin/swig
31-Jan-2020 12:28:46 checking swig version... 3.0.12
31-Jan-2020 12:28:46 checking requested swig version (3.0.0)... yes
31-Jan-2020 12:28:46 checking for libxml2 library... checking for xml2-config... /usr/bin/xml2-config
31-Jan-2020 12:28:46 yes
31-Jan-2020 12:28:46 checking for EIGEN... yes
31-Jan-2020 12:28:46 configure: removing /tmp/casatools-config-3383
31-Jan-2020 12:28:46 configure: creating ./config.status
31-Jan-2020 12:28:46 config.status: creating build.properties
31-Jan-2020 12:28:46 config.status: creating setup.py
31-Jan-2020 12:28:49 conflicts: 8 shift/reduce
31-Jan-2020 12:28:59 _debug_build_: False
31-Jan-2020 12:28:59 Using /opt/casa/03 for third party libraries
31-Jan-2020 12:28:59 6.1.0.46 6.1.0.46
31-Jan-2020 12:28:59
31-Jan-2020 12:28:59 6.1.0.46
31-Jan-2020 12:28:59 6.1.0.46
31-Jan-2020 12:28:59 6 1 0 46   
31-Jan-2020 12:28:59 6.1.0.46
31-Jan-2020 12:28:59 generating version header...
31-Jan-2020 12:28:59 <inc> coordsys, image, synthesisimstore, componentlist, msmetadata, table
31-Jan-2020 12:28:59 <tgt> libmsmetadata < msmetadata
31-Jan-2020 12:28:59 <tgt> libtable < table
31-Jan-2020 12:28:59 <tgt> libcomponentlistcoordsysimage < componentlist coordsys image
31-Jan-2020 12:28:59 <tgt> libsynthesisimstore < synthesisimstore
31-Jan-2020 12:28:59 <tgt> synthesismaskhandler : synthesismaskhandler
31-Jan-2020 12:28:59 <tgt> utils : utils
31-Jan-2020 12:28:59 <tgt> miriadfiller : miriadfiller
31-Jan-2020 12:28:59 <tgt> coordsys : libcomponentlistcoordsysimage
31-Jan-2020 12:28:59 <tgt> mstransformer : mstransformer
31-Jan-2020 12:28:59 <tgt> vpmanager : vpmanager
31-Jan-2020 12:28:59 <tgt> image : libcomponentlistcoordsysimage
31-Jan-2020 12:28:59 <tgt> measures : measures
31-Jan-2020 12:28:59 <tgt> sakura : sakura
31-Jan-2020 12:28:59 <tgt> atmosphere : atmosphere
31-Jan-2020 12:28:59 <tgt> quanta : quanta
31-Jan-2020 12:28:59 <tgt> vlafiller : vlafiller
31-Jan-2020 12:28:59 <tgt> synthesisdeconvolver : synthesisdeconvolver
31-Jan-2020 12:28:59 <tgt> synthesisimstore : libsynthesisimstore
31-Jan-2020 12:28:59 <tgt> synthesisnormalizer : libsynthesisimstore synthesisnormalizer
31-Jan-2020 12:28:59 <tgt> regionmanager : regionmanager
31-Jan-2020 12:28:59 <tgt> calanalysis : calanalysis
31-Jan-2020 12:28:59 <tgt> iterbotsink : iterbotsink
31-Jan-2020 12:28:59 <tgt> singledishms : singledishms
31-Jan-2020 12:28:59 <tgt> synthesisimager : libsynthesisimstore synthesisimager
31-Jan-2020 12:28:59 <tgt> imager : imager
31-Jan-2020 12:28:59 <tgt> simulator : simulator
31-Jan-2020 12:28:59 <tgt> componentlist : libcomponentlistcoordsysimage
31-Jan-2020 12:28:59 <tgt> spectralline : spectralline
31-Jan-2020 12:28:59 <tgt> msmetadata : libmsmetadata
31-Jan-2020 12:28:59 <tgt> imagepol : imagepol libcomponentlistcoordsysimage
31-Jan-2020 12:28:59 <tgt> agentflagger : agentflagger
31-Jan-2020 12:28:59 <tgt> sdm : sdm
31-Jan-2020 12:28:59 <tgt> atcafiller : atcafiller
31-Jan-2020 12:28:59 <tgt> imagemetadata : imagemetadata
31-Jan-2020 12:28:59 <tgt> calibrater : calibrater
31-Jan-2020 12:28:59 <tgt> logsink : logsink
31-Jan-2020 12:28:59 <tgt> functional : functional
31-Jan-2020 12:28:59 <tgt> ms : libmsmetadata libtable ms
31-Jan-2020 12:28:59 <tgt> synthesisutils : libsynthesisimstore synthesisutils
31-Jan-2020 12:28:59 <tgt> table : libtable
31-Jan-2020 12:28:59
31-Jan-2020 12:28:59 Casacore version 3.1.2
31-Jan-2020 12:28:59 copying the grpc source directory...
31-Jan-2020 12:28:59         ]=> ['rsync', '-aq', 'grpc-source/', 'build/grpc.linux-x86_64-3.6'] (cwd: /root/casa6/casatools)
31-Jan-2020 12:29:04
31-Jan-2020 12:29:04 building google grpc...
31-Jan-2020 12:29:04         ]=> ['make', 'RPATH_DIR=@rpath/', 'prefix=/root/casa6/casatools/build/lib.linux-x86_64-3.6/casatools/__casac__', 'HAS_SYSTEM_PROTOBUF=false', 'PROTOBUF_CONFIG_OPTS=--prefix=/root/casa6/casatools/build/grpc-install.linux-x86_64-3.6', 'VERBOSE=1', 'install'] (cwd: /root/casa6/casatools/build/grpc.linux-x86_64-3.6)
31-Jan-2020 12:30:37
Request to stop 'CASA-CD-JOB1-2' received from vsuorant
31-Jan-2020 12:30:37 Failing task since return code of [/export/home/cbt-el7-10/bamboohome/temp/CASA-CD-JOB1-2-ScriptBuildTask-2350008127358756206.sh] was 143 while expected 0
31-Jan-2020 12:30:37 Force Stop build feature is enabled for current plan. Either Bamboo has detected the build has hung or it has been manually stopped.
31-Jan-2020 12:30:37 Finished task 'Create tools wheel' with result: Failed
31-Jan-2020 12:30:37 Attempting to generate stack trace and terminate spawned sub-processes of process id: 26263
31-Jan-2020 12:30:37 Starting task 'Clean up' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script'
31-Jan-2020 12:30:37
Beginning to execute external process for build 'CASA - Casa Data - Build and Package RHEL6 #2 (CASA-CD-JOB1-2)'
... running command line:
/export/home/cbt-el7-10/bamboohome/temp/CASA-CD-JOB1-2-ScriptBuildTask-1329533506816190285.sh
... in: /export/home/cbt-el7-10/bamboohome/xml-data/build-dir/CASA-CD-JOB1
... using extra environment variables:
bamboo_planRepository_1_branch=master
bamboo_capability_buildmachinetype=casa6pullrequest
bamboo_planRepository_1_branchDisplayName=master
bamboo_repository_revision_number=bffefd6da545e4e4b166c10766e054d7cf2704be
bamboo_resultsUrl=https://open-bamboo.nrao.edu/browse/CASA-CD-JOB1-2
bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_18=/export/home/cbt-el7-10/bamboohome/temp/CASA-CD-JOB1-2-ScriptBuildTask-196857640705749231.sh
bamboo_build_working_directory=/export/home/cbt-el7-10/bamboohome/xml-data/build-dir/CASA-CD-JOB1
bamboo_planRepository_1_name=Casadata
bamboo_buildKey=CASA-CD-JOB1
bamboo_shortPlanName=Casa Data
bamboo_capability_hostname=cbt-el7-10.cv.nrao.edu
bamboo_planRepository_name=Casadata
bamboo_buildNumber=2
bamboo_shortJobName=Build and Package RHEL6
bamboo_buildResultsUrl=https://open-bamboo.nrao.edu/browse/CASA-CD-JOB1-2
bamboo_repository_39780674_name=Casadata
bamboo_planRepository_repositoryUrl=ssh://git@open-bitbucket.nrao.edu:7999/casa/casadata.git
bamboo_agentId=35356686
bamboo_planName=CASA - Casa Data
bamboo_shortPlanKey=CD
bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_9=/export/home/cbt-el7-10/bamboohome/temp/CASA-CD-JOB1-2-ScriptBuildTask-2805244547846086963.sh
bamboo_dockerContainerNames=wheel-container
bamboo_shortJobKey=JOB1
bamboo_build_commandline_com_atlassian_bamboo_plugins_bamboo_docker_plugin_task_docker_cli_16=/bin/docker pull casa-docker.nrao.edu:5000/casa-build-tools-centos6:latest
bamboo_planRepository_revision=bffefd6da545e4e4b166c10766e054d7cf2704be
bamboo_buildTimeStamp=2020-01-31T12:25:29.057-05:00
bamboo_repository_previous_revision_number=2166dc5fa45a1745db9cd6080759993c3626b0ba
bamboo_casaadm_password=********
bamboo_build_commandline_com_atlassian_bamboo_plugins_bamboo_docker_plugin_task_docker_cli_7=/bin/docker run --volume /export/home/cbt-el7-10/bamboohome/xml-data/build-dir/CASA-CD-JOB1/wheeldirectory:/wheeldirectory --volume /export/home/cbt-el7-10/bamboohome/xml-data/build-dir/CASA-CD-JOB1/../ccache:/ccache --detach --name wheel-container casa-docker.nrao.edu:5000/casa-build-tools-centos6 tail -f /dev/null
bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_3=/export/home/cbt-el7-10/bamboohome/temp/CASA-CD-JOB1-2-ScriptBuildTask-2350008127358756206.sh
bamboo_planRepository_previousRevision=2166dc5fa45a1745db9cd6080759993c3626b0ba
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bamboo_repository_branch_name=master
bamboo_buildPlanName=CASA - Casa Data - Build and Package RHEL6
bamboo_capability_system_jdk_JDK_1_8_0_222=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.222.b10-0.el7_6.x86_64
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bamboo_capability_system_hg_executable=/bin/hg
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bamboo_repository_39780674_git_username=
bamboo_repository_name=Casadata
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bamboo_agentWorkingDirectory=/export/home/cbt-el7-10/bamboohome/xml-data/build-dir
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31-Jan-2020 12:30:37 Starting cleanup
31-Jan-2020 12:30:37 Found related process: pid: 27581 ppid: 26263 pgid: 26260 %cpu: 0.0 %mem: 0.0 cmd: /bin/sh
31-Jan-2020 12:30:37 Found related process: pid: 9135 ppid: 1 pgid: 26260 %cpu: 0.0 %mem: 0.1 cmd: docker
31-Jan-2020 12:30:37 getStackTraceAndKillRelatedProcesses for 2 processes
31-Jan-2020 12:30:37 Executing kill -3 9135
31-Jan-2020 12:30:37 Executing kill -3 27581
31-Jan-2020 12:30:42 Killing: 9135
31-Jan-2020 12:30:42 Executing kill 9135
31-Jan-2020 12:30:42 Killing: 27581
31-Jan-2020 12:30:42 Executing kill 27581
31-Jan-2020 12:30:47 Force Stop build feature is enabled for current plan. Either Bamboo has detected the build has hung or it has been manually stopped.
31-Jan-2020 12:30:47 Has finished generating stack trace and terminating spawned sub-processes of process id: 26263
31-Jan-2020 12:30:47 Failing task since return code of [/export/home/cbt-el7-10/bamboohome/temp/CASA-CD-JOB1-2-ScriptBuildTask-1329533506816190285.sh] was 143 while expected 0
31-Jan-2020 12:30:47 Finished task 'Clean up' with result: Failed
31-Jan-2020 12:30:47 Running post build plugin 'Docker Container Cleanup'
31-Jan-2020 12:30:47
Beginning to execute external process for build 'CASA - Casa Data - Build and Package RHEL6 #2 (CASA-CD-JOB1-2)'
... running command line:
/bin/docker rm -f wheel-container
... in: /export/home/cbt-el7-10/bamboohome/xml-data/build-dir/CASA-CD-JOB1
31-Jan-2020 12:30:59 wheel-container
31-Jan-2020 12:30:59 Running post build plugin 'NCover Results Collector'
31-Jan-2020 12:30:59 Running post build plugin 'Clover Results Collector'
31-Jan-2020 12:30:59 Running post build plugin 'npm Cache Cleanup'
31-Jan-2020 12:30:59 Running post build plugin 'Artifact Copier'
31-Jan-2020 12:30:59 Publishing an artifact: Tool wheel
31-Jan-2020 12:30:59 Finished publishing of artifact Required shared artifact: [Tool wheel], pattern: [casatools*.whl] anchored at: [wheeldirectory/] in 125.4 ms
31-Jan-2020 12:30:59 Publishing an artifact: Task wheel
31-Jan-2020 12:31:00 Finished publishing of artifact Required shared artifact: [Task wheel], pattern: [casatasks*.whl] anchored at: [wheeldirectory/] in 18.04 ms
31-Jan-2020 12:31:00 Publishing an artifact: Shell wheel
31-Jan-2020 12:31:00 Finished publishing of artifact Required shared artifact: [Shell wheel], pattern: [casashell*.whl] anchored at: [wheeldirectory/] in 35.93 ms
31-Jan-2020 12:31:00 Publishing an artifact: Tar distribution
31-Jan-2020 12:31:00 Finished publishing of artifact Required shared artifact: [Tar distribution], pattern: [*.xz] anchored at: [wheeldirectory/] in 12.11 ms
31-Jan-2020 12:31:00 Publishing an artifact: Manifests
31-Jan-2020 12:31:00 Finished publishing of artifact Required shared artifact: [Manifests], pattern: [*.mf] anchored at: [wheeldirectory/] in 11.47 ms
31-Jan-2020 12:31:00 Publishing an artifact: version
31-Jan-2020 12:31:00 Finished publishing of artifact Required shared artifact: [version], pattern: [VERSION.txt] anchored at: [wheeldirectory] in 17.63 ms
31-Jan-2020 12:31:00 Finalising the build...
31-Jan-2020 12:31:00 Stopping timer.
31-Jan-2020 12:31:00 Build CASA-CD-JOB1-2 completed.
31-Jan-2020 12:31:00 Running on server: post build plugin 'NCover Results Collector'
31-Jan-2020 12:31:00 Running on server: post build plugin 'Build Hanging Detection Configuration'
31-Jan-2020 12:31:00 Running on server: post build plugin 'Clover Delta Calculator'
31-Jan-2020 12:31:00 Running on server: post build plugin 'Maven Dependencies Postprocessor'
31-Jan-2020 12:31:00 All post build plugins have finished
31-Jan-2020 12:31:00 Generating build results summary...
31-Jan-2020 12:31:00 Saving build results to disk...
31-Jan-2020 12:31:00 Logging substituted variables...
31-Jan-2020 12:31:00 Indexing build results...
31-Jan-2020 12:31:00 Finished building CASA-CD-JOB1-2.