Updating files:  46% (5011/10893)
Updating files:  47% (5120/10893)
Updating files:  48% (5229/10893)
Updating files:  49% (5338/10893)
Updating files:  50% (5447/10893)
Updating files:  50% (5480/10893)
Updating files:  51% (5556/10893)
Updating files:  52% (5665/10893)
Updating files:  53% (5774/10893)
Updating files:  54% (5883/10893)
Updating files:  55% (5992/10893)
Updating files:  56% (6101/10893)
Updating files:  56% (6138/10893)
Updating files:  57% (6210/10893)
Updating files:  58% (6318/10893)
Updating files:  59% (6427/10893)
Updating files:  60% (6536/10893)
Updating files:  61% (6645/10893)
Updating files:  62% (6754/10893)
Updating files:  63% (6863/10893)
Updating files:  63% (6897/10893)
Updating files:  64% (6972/10893)
Updating files:  65% (7081/10893)
Updating files:  66% (7190/10893)
Updating files:  67% (7299/10893)
Updating files:  68% (7408/10893)
Updating files:  69% (7517/10893)
Updating files:  70% (7626/10893)
Updating files:  71% (7735/10893)
Updating files:  72% (7843/10893)
Updating files:  72% (7895/10893)
Updating files:  73% (7952/10893)
Updating files:  74% (8061/10893)
Updating files:  75% (8170/10893)
Updating files:  76% (8279/10893)
Updating files:  77% (8388/10893)
Updating files:  78% (8497/10893)
Updating files:  78% (8519/10893)
Updating files:  79% (8606/10893)
Updating files:  80% (8715/10893)
Updating files:  81% (8824/10893)
Updating files:  82% (8933/10893)
Updating files:  83% (9042/10893)
Updating files:  84% (9151/10893)
Updating files:  85% (9260/10893)
Updating files:  86% (9368/10893)
Updating files:  86% (9395/10893)
Updating files:  87% (9477/10893)
Updating files:  88% (9586/10893)
Updating files:  89% (9695/10893)
Updating files:  90% (9804/10893)
Updating files:  91% (9913/10893)
Updating files:  92% (10022/10893)
Updating files:  92% (10067/10893)
Updating files:  93% (10131/10893)
Updating files:  94% (10240/10893)
Updating files:  95% (10349/10893)
Updating files:  96% (10458/10893)
Updating files:  97% (10567/10893)
Updating files:  98% (10676/10893)
Updating files:  99% (10785/10893)
Updating files:  99% (10794/10893)
Updating files: 100% (10893/10893)
Updating files: 100% (10893/10893), done.
Switched to a new branch 'CAS-13481'
Submodule 'casatools/casacore' (https://github.com/casacore/casacore.git) registered for path 'casatools/casacore'
Submodule 'casatools/grpc-source' (https://github.com/grpc/grpc) registered for path 'casatools/grpc-source'
Cloning into '/Volumes/EXT/bamboohome/xml-data/build-dir/CASA-C6MP380-OSX1015P38/casa6/casatools/casacore'...
Cloning into '/Volumes/EXT/bamboohome/xml-data/build-dir/CASA-C6MP380-OSX1015P38/casa6/casatools/grpc-source'...
Submodule 'third_party/abseil-cpp' (https://github.com/abseil/abseil-cpp) registered for path 'casatools/grpc-source/third_party/abseil-cpp'
Submodule 'third_party/benchmark' (https://github.com/google/benchmark) registered for path 'casatools/grpc-source/third_party/benchmark'
Submodule 'third_party/bloaty' (https://github.com/google/bloaty.git) registered for path 'casatools/grpc-source/third_party/bloaty'
Submodule 'third_party/boringssl' (https://github.com/google/boringssl.git) registered for path 'casatools/grpc-source/third_party/boringssl'
Submodule 'third_party/boringssl-with-bazel' (https://github.com/google/boringssl.git) registered for path 'casatools/grpc-source/third_party/boringssl-with-bazel'
Submodule 'third_party/cares/cares' (https://github.com/c-ares/c-ares.git) registered for path 'casatools/grpc-source/third_party/cares/cares'
Submodule 'third_party/gflags' (https://github.com/gflags/gflags.git) registered for path 'casatools/grpc-source/third_party/gflags'
Submodule 'third_party/googletest' (https://github.com/google/googletest.git) registered for path 'casatools/grpc-source/third_party/googletest'
Submodule 'third_party/protobuf' (https://github.com/google/protobuf.git) registered for path 'casatools/grpc-source/third_party/protobuf'
Submodule 'third_party/zlib' (https://github.com/madler/zlib) registered for path 'casatools/grpc-source/third_party/zlib'
Cloning into '/Volumes/EXT/bamboohome/xml-data/build-dir/CASA-C6MP380-OSX1015P38/casa6/casatools/grpc-source/third_party/abseil-cpp'...
Cloning into '/Volumes/EXT/bamboohome/xml-data/build-dir/CASA-C6MP380-OSX1015P38/casa6/casatools/grpc-source/third_party/benchmark'...
Cloning into '/Volumes/EXT/bamboohome/xml-data/build-dir/CASA-C6MP380-OSX1015P38/casa6/casatools/grpc-source/third_party/bloaty'...
Cloning into '/Volumes/EXT/bamboohome/xml-data/build-dir/CASA-C6MP380-OSX1015P38/casa6/casatools/grpc-source/third_party/boringssl'...
Cloning into '/Volumes/EXT/bamboohome/xml-data/build-dir/CASA-C6MP380-OSX1015P38/casa6/casatools/grpc-source/third_party/boringssl-with-bazel'...
Cloning into '/Volumes/EXT/bamboohome/xml-data/build-dir/CASA-C6MP380-OSX1015P38/casa6/casatools/grpc-source/third_party/cares/cares'...
Cloning into '/Volumes/EXT/bamboohome/xml-data/build-dir/CASA-C6MP380-OSX1015P38/casa6/casatools/grpc-source/third_party/gflags'...
Cloning into '/Volumes/EXT/bamboohome/xml-data/build-dir/CASA-C6MP380-OSX1015P38/casa6/casatools/grpc-source/third_party/googletest'...
Cloning into '/Volumes/EXT/bamboohome/xml-data/build-dir/CASA-C6MP380-OSX1015P38/casa6/casatools/grpc-source/third_party/protobuf'...
Cloning into '/Volumes/EXT/bamboohome/xml-data/build-dir/CASA-C6MP380-OSX1015P38/casa6/casatools/grpc-source/third_party/zlib'...
Submodule 'third_party/googletest' (https://github.com/google/googletest.git) registered for path 'casatools/grpc-source/third_party/bloaty/third_party/googletest'
Submodule 'third_party/libFuzzer' (https://chromium.googlesource.com/chromium/llvm-project/llvm/lib/Fuzzer) registered for path 'casatools/grpc-source/third_party/bloaty/third_party/libFuzzer'
Submodule 'third_party/re2' (https://github.com/google/re2) registered for path 'casatools/grpc-source/third_party/bloaty/third_party/re2'
Cloning into '/Volumes/EXT/bamboohome/xml-data/build-dir/CASA-C6MP380-OSX1015P38/casa6/casatools/grpc-source/third_party/bloaty/third_party/googletest'...
Cloning into '/Volumes/EXT/bamboohome/xml-data/build-dir/CASA-C6MP380-OSX1015P38/casa6/casatools/grpc-source/third_party/bloaty/third_party/libFuzzer'...
Cloning into '/Volumes/EXT/bamboohome/xml-data/build-dir/CASA-C6MP380-OSX1015P38/casa6/casatools/grpc-source/third_party/bloaty/third_party/re2'...
Submodule 'doc' (https://github.com/gflags/gflags.git) registered for path 'casatools/grpc-source/third_party/gflags/doc'
Cloning into '/Volumes/EXT/bamboohome/xml-data/build-dir/CASA-C6MP380-OSX1015P38/casa6/casatools/grpc-source/third_party/gflags/doc'...
Submodule 'third_party/benchmark' (https://github.com/google/benchmark.git) registered for path 'casatools/grpc-source/third_party/protobuf/third_party/benchmark'
Cloning into '/Volumes/EXT/bamboohome/xml-data/build-dir/CASA-C6MP380-OSX1015P38/casa6/casatools/grpc-source/third_party/protobuf/third_party/benchmark'...
configure: WARNING: No working MPI compiler could be found, won't use MPI.
ignoring rundata setting (/home/casa/data/master) because it is not a directory
package init file 'build/lib.macosx-10.15-x86_64-3.8/casatasks/__xml__/__init__.py' not found (or not a regular file)
package init file 'build/lib.macosx-10.15-x86_64-3.8/casatasks/private/__init__.py' not found (or not a regular file)
error: pathspec 'CAS-13481' did not match any file(s) known to git
ignoring rundata setting (/home/casa/data/master) because it is not a directory
/Volumes/EXT/bamboohome/xml-data/build-dir/CASA-C6MP380-OSX1015P38/casa6/casatasks/build/lib.macosx-10.15-x86_64-3.8/casatasks/private/task_sdimaging.py:197: SyntaxWarning: 'str' object is not callable; perhaps you missed a comma?
  raise RuntimeError("Invalid spw selction, %s ,for MS %d" (str(spw), file_idx))
/Volumes/EXT/bamboohome/xml-data/build-dir/CASA-C6MP380-OSX1015P38/casa6/casatasks/build/lib.macosx-10.15-x86_64-3.8/casatasks/private/task_plotants.py:317: SyntaxWarning: "is" with a literal. Did you mean "=="?
  if halign is 'center':
/Volumes/EXT/bamboohome/xml-data/build-dir/CASA-C6MP380-OSX1015P38/casa6/casatasks/build/lib.macosx-10.15-x86_64-3.8/casatasks/private/task_plotants.py:359: SyntaxWarning: "is" with a literal. Did you mean "=="?
  if halign is 'center':
package init file 'build/lib.macosx-10.15-x86_64-3.8.1.final/casashell/private/__init__.py' not found (or not a regular file)
package init file 'build/lib.macosx-10.15-x86_64-3.8.1.final/casashell/private/ttconfig/__init__.py' not found (or not a regular file)
WARNING: Skipping casadata as it is not installed.
WARNING: Skipping casatelemetry as it is not installed.
WARNING: Skipping casatools as it is not installed.
WARNING: Skipping casatasks as it is not installed.
WARNING: Skipping casashell as it is not installed.
WARNING: Skipping casaviewer as it is not installed.
WARNING: Skipping casaplotms as it is not installed.
WARNING: Skipping grpcio as it is not installed.
WARNING: Skipping protobuf as it is not installed.
Switched to a new branch 'CAS-13481'
Cloning into 'casalith'...
warning: the following paths have collided (e.g. case-sensitive paths
on a case-insensitive filesystem) and only one from the same
colliding group is in the working tree:

  'build-casalith/work/linux/template/lib/mpi/bin/mpiCC'
  'build-casalith/work/linux/template/lib/mpi/bin/mpicc'
  'build-casalith/work/linux/template/lib/mpi/bin/mpiCC-vt'
  'build-casalith/work/linux/template/lib/mpi/bin/mpicc-vt'
  'build-casalith/work/linux/template/lib/mpi/bin/orteCC'
  'build-casalith/work/linux/template/lib/mpi/bin/ortecc'
  'build-casalith/work/linux/template/lib/mpi/bin/vtCC'
  'build-casalith/work/linux/template/lib/mpi/bin/vtcc'
Submodule 'build-casalith/work/casa-pkg' (https://open-bitbucket.nrao.edu/scm/casa/casa-pkg.git) registered for path 'build-casalith/work/casa-pkg'
Cloning into '/Volumes/EXT/bamboohome/xml-data/build-dir/CASA-C6MP380-OSX1015P38/casa-build-utils/casalith/casalith/build-casalith/work/casa-pkg'...
Switched to a new branch 'CAS-13481'
Build was manually stopped.