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Casa6

Takeshi Nakazato 02 Jun 2022 cffd9dc77f74b2827bf7d3d22a8937e471cd40b3

Pull request #572: CAS-13713 do not override OpenMP configuration
Merge in CASA/casa6 from CAS-13713 to master

* commit '22a3bba8911dc8e82b1dfde77b3dbe6b8c6293f9': (21 commits)
  CAS-13713 skip OpenMP tests on macOS
  CAS-13713 bug fix on environment_variable_manager
  CAS-13713 renaming variables
  CAS-13713 properly handle the case that OMP_NUM_THREADS is zero
  CAS-13713 refactoring pattern matching
  CAS-13713 refinement of assertion
  CAS-13713 define variable to hold OMP_NUM_THREADS value as int
  CAS-13713 add test for unsetting OMP_NUM_THREADS
  CAS-13713 replace print statement with casalog.post
  CAS-13713 bug fix on regex
  CAS-13713 turning precondition into assertion
  CAS-13713 correct handling of environment variable
  CAS-13713 put assertion out of if block
  CAS-13713 grammatical fix
  CAS-13713 added supplementary comment on default value, -1, for nthreads
  CAS-13713 add test for OMP_NUM_THREADS env var.
  CAS-13713 more fix on omp parallelization
  CAS-13713 respect numThreads_
  CAS-13713 respect OMP_NUM_THREADS environment variable
  CAS-13713 do not call omp_set_num_threads()
  ...
Takeshi Nakazato 01 Jun 2022 22a3bba8911dc8e82b1dfde77b3dbe6b8c6293f9 m

CAS-13713 skip OpenMP tests on macOS
- casatasks/tests/tasks/test_task_sdatmcor.py (version 22a3bba8911dc8e82b1dfde77b3dbe6b8c6293f9) (diffs)
Takeshi Nakazato 20 May 2022 6e3052636785c46ee85f55edf842f710c5071753 m

CAS-13713 bug fix on environment_variable_manager
- casatasks/tests/tasks/test_task_sdatmcor.py (version 6e3052636785c46ee85f55edf842f710c5071753) (diffs)
Takeshi Nakazato 20 May 2022 f88e45032af7ec75a61a7f3748815938d95cdf5e m

CAS-13713 renaming variables
NAOJ code review Refs #2430
- casatasks/tests/tasks/test_task_sdatmcor.py (version f88e45032af7ec75a61a7f3748815938d95cdf5e) (diffs)
Takeshi Nakazato 19 May 2022 c020eace547c65924c665454b399ce745d37cd66 m

CAS-13713 properly handle the case that OMP_NUM_THREADS is zero
NAOJ code review Refs #2433
- casatasks/tests/tasks/test_task_sdatmcor.py (version c020eace547c65924c665454b399ce745d37cd66) (diffs)
- casatools/src/code/mstransform/TVI/SDAtmosphereCorrectionTVI.cc (version c020eace547c65924c665454b399ce745d37cd66) (diffs)
Takeshi Nakazato 19 May 2022 241b3996935dc4b27cd8bf45015feba0689fad14 m

CAS-13713 refactoring pattern matching
NAOJ code review Refs #2430
- casatasks/tests/tasks/test_task_sdatmcor.py (version 241b3996935dc4b27cd8bf45015feba0689fad14) (diffs)
Takeshi Nakazato 19 May 2022 eed3a21ff32371ed042fff5e39a5c7e5e58b0cc8 m

CAS-13713 refinement of assertion
NAOJ code review Refs #2423
- casatasks/tests/tasks/test_task_sdatmcor.py (version eed3a21ff32371ed042fff5e39a5c7e5e58b0cc8) (diffs)
Takeshi Nakazato 19 May 2022 f11b1e45441560f923dc68260e511840b373121a m

CAS-13713 define variable to hold OMP_NUM_THREADS value as int
NAOJ code review Refs #2423
- casatasks/tests/tasks/test_task_sdatmcor.py (version f11b1e45441560f923dc68260e511840b373121a) (diffs)
Takeshi Nakazato 18 May 2022 253685375fdcaf0dd0e9c3dddd103b710bc36cbd m

CAS-13713 add test for unsetting OMP_NUM_THREADS
NAOJ code review Refs #2414
- casatasks/tests/tasks/test_task_sdatmcor.py (version 253685375fdcaf0dd0e9c3dddd103b710bc36cbd) (diffs)
Takeshi Nakazato 18 May 2022 9f5ed500947e5dc618827a256bac6a50c78f3dc0 m

CAS-13713 replace print statement with casalog.post
NAOJ code review Refs #2432
- casatasks/tests/tasks/test_task_sdatmcor.py (version 9f5ed500947e5dc618827a256bac6a50c78f3dc0) (diffs)
Takeshi Nakazato 18 May 2022 dbc51a99930a7f5050933eda3b3d3d28696696f2 m

CAS-13713 bug fix on regex
NAOJ code review #2428
- casatasks/tests/tasks/test_task_sdatmcor.py (version dbc51a99930a7f5050933eda3b3d3d28696696f2) (diffs)
Takeshi Nakazato 18 May 2022 1dc77506e618ea13c66d6e64a86f8e61401bbbaa m

CAS-13713 turning precondition into assertion
NAOJ code review #2427
- casatasks/tests/tasks/test_task_sdatmcor.py (version 1dc77506e618ea13c66d6e64a86f8e61401bbbaa) (diffs)
Takeshi Nakazato 18 May 2022 ef19b7e2845bbc9b371c1a0bbb7952ca54f9856e m

CAS-13713 correct handling of environment variable
NAOJ code review Refs #2425 #2426
- casatasks/tests/tasks/test_task_sdatmcor.py (version ef19b7e2845bbc9b371c1a0bbb7952ca54f9856e) (diffs)
Takeshi Nakazato 18 May 2022 3a11082f6127593df0d188c5b557656add1d68f0 m

CAS-13713 put assertion out of if block
NAOJ code review Refs #2424
- casatasks/tests/tasks/test_task_sdatmcor.py (version 3a11082f6127593df0d188c5b557656add1d68f0) (diffs)
Takeshi Nakazato 18 May 2022 8e59f7950fabfea944c3d1c2cf1e9273f23ea229 m

CAS-13713 grammatical fix
NAOJ code review Refs #2422
- casatasks/tests/tasks/test_task_sdatmcor.py (version 8e59f7950fabfea944c3d1c2cf1e9273f23ea229) (diffs)
Takeshi Nakazato 18 May 2022 7f3821b846edc8aa3f9d7c62473653dfe64bc91d m

CAS-13713 added supplementary comment on default value, -1, for nthreads
NAOJ code review Refs #2416
- casatasks/src/private/task_sdatmcor.py (version 7f3821b846edc8aa3f9d7c62473653dfe64bc91d) (diffs)
Takeshi Nakazato 09 May 2022 1fa18c6595031157db8c74f2d70f39f6032d51ad m

CAS-13713 add test for OMP_NUM_THREADS env var.
- casatasks/tests/tasks/test_task_sdatmcor.py (version 1fa18c6595031157db8c74f2d70f39f6032d51ad) (diffs)
Takeshi Nakazato 09 May 2022 34fe6e9c2c298adcc42809c0f25a1a69665c5e59 m

CAS-13713 more fix on omp parallelization
- casatools/src/code/mstransform/TVI/SDAtmosphereCorrectionTVI.cc (version 34fe6e9c2c298adcc42809c0f25a1a69665c5e59) (diffs)
Takeshi Nakazato 08 May 2022 4788acc4216cbe0f7776b54fee150a408f1169a6 m

CAS-13713 respect numThreads_
- no OpenMP parallelization if numThrads_ is 1
- adjusted condition for parallelization
- casatools/src/code/mstransform/TVI/SDAtmosphereCorrectionTVI.cc (version 4788acc4216cbe0f7776b54fee150a408f1169a6) (diffs)
Takeshi Nakazato 02 May 2022 6422d7c5dc5fed9024a8076f8ec3fcd794ac8503 m

CAS-13713 respect OMP_NUM_THREADS environment variable
- casatasks/src/private/task_sdatmcor.py (version 6422d7c5dc5fed9024a8076f8ec3fcd794ac8503) (diffs)
- casatools/src/code/mstransform/TVI/SDAtmosphereCorrectionTVI.cc (version 6422d7c5dc5fed9024a8076f8ec3fcd794ac8503) (diffs)
Takeshi Nakazato 02 May 2022 07820b93c1062862992a01437996eaa459aae488 m

CAS-13713 do not call omp_set_num_threads()
- casatools/src/code/mstransform/TVI/SDAtmosphereCorrectionTVI.cc (version 07820b93c1062862992a01437996eaa459aae488) (diffs)
- casatools/src/code/mstransform/TVI/SDAtmosphereCorrectionTVI.h (version 07820b93c1062862992a01437996eaa459aae488) (diffs)
Takeshi Nakazato 02 May 2022 d1acc9827b482f3603f81d207aee5abd968bda3d m

CAS-13713 add test for omp_num_threads
- casatasks/tests/tasks/test_task_sdatmcor.py (version d1acc9827b482f3603f81d207aee5abd968bda3d) (diffs)