Updating files:  43% (4684/10892)
Updating files:  44% (4793/10892)
Updating files:  45% (4902/10892)
Updating files:  46% (5011/10892)
Updating files:  47% (5120/10892)
Updating files:  48% (5229/10892)
Updating files:  49% (5338/10892)
Updating files:  50% (5446/10892)
Updating files:  51% (5555/10892)
Updating files:  52% (5664/10892)
Updating files:  53% (5773/10892)
Updating files:  54% (5882/10892)
Updating files:  55% (5991/10892)
Updating files:  55% (6012/10892)
Updating files:  56% (6100/10892)
Updating files:  56% (6138/10892)
Updating files:  57% (6209/10892)
Updating files:  58% (6318/10892)
Updating files:  59% (6427/10892)
Updating files:  60% (6536/10892)
Updating files:  61% (6645/10892)
Updating files:  62% (6754/10892)
Updating files:  63% (6862/10892)
Updating files:  64% (6971/10892)
Updating files:  65% (7080/10892)
Updating files:  66% (7189/10892)
Updating files:  67% (7298/10892)
Updating files:  68% (7407/10892)
Updating files:  69% (7516/10892)
Updating files:  70% (7625/10892)
Updating files:  70% (7668/10892)
Updating files:  71% (7734/10892)
Updating files:  72% (7843/10892)
Updating files:  73% (7952/10892)
Updating files:  74% (8061/10892)
Updating files:  75% (8169/10892)
Updating files:  76% (8278/10892)
Updating files:  77% (8387/10892)
Updating files:  78% (8496/10892)
Updating files:  79% (8605/10892)
Updating files:  80% (8714/10892)
Updating files:  81% (8823/10892)
Updating files:  82% (8932/10892)
Updating files:  83% (9041/10892)
Updating files:  84% (9150/10892)
Updating files:  85% (9259/10892)
Updating files:  85% (9274/10892)
Updating files:  86% (9368/10892)
Updating files:  87% (9477/10892)
Updating files:  88% (9585/10892)
Updating files:  89% (9694/10892)
Updating files:  90% (9803/10892)
Updating files:  91% (9912/10892)
Updating files:  92% (10021/10892)
Updating files:  93% (10130/10892)
Updating files:  94% (10239/10892)
Updating files:  95% (10348/10892)
Updating files:  96% (10457/10892)
Updating files:  97% (10566/10892)
Updating files:  98% (10675/10892)
Updating files:  98% (10745/10892)
Updating files:  99% (10784/10892)
Updating files: 100% (10892/10892)
Updating files: 100% (10892/10892), done.
Switched to a new branch 'CAS-13405'
Submodule 'casatools/casacore' (https://github.com/casacore/casacore.git) registered for path 'casatools/casacore'
Submodule 'casatools/grpc-source' (https://github.com/grpc/grpc) registered for path 'casatools/grpc-source'
Cloning into '/Volumes/ExtData/bamboohome/xml-data/build-dir/CASA-C6CV1-O1P38/casa6/casatools/casacore'...
Cloning into '/Volumes/ExtData/bamboohome/xml-data/build-dir/CASA-C6CV1-O1P38/casa6/casatools/grpc-source'...
Submodule 'third_party/abseil-cpp' (https://github.com/abseil/abseil-cpp) registered for path 'casatools/grpc-source/third_party/abseil-cpp'
Submodule 'third_party/benchmark' (https://github.com/google/benchmark) registered for path 'casatools/grpc-source/third_party/benchmark'
Submodule 'third_party/bloaty' (https://github.com/google/bloaty.git) registered for path 'casatools/grpc-source/third_party/bloaty'
Submodule 'third_party/boringssl' (https://github.com/google/boringssl.git) registered for path 'casatools/grpc-source/third_party/boringssl'
Submodule 'third_party/boringssl-with-bazel' (https://github.com/google/boringssl.git) registered for path 'casatools/grpc-source/third_party/boringssl-with-bazel'
Submodule 'third_party/cares/cares' (https://github.com/c-ares/c-ares.git) registered for path 'casatools/grpc-source/third_party/cares/cares'
Submodule 'third_party/gflags' (https://github.com/gflags/gflags.git) registered for path 'casatools/grpc-source/third_party/gflags'
Submodule 'third_party/googletest' (https://github.com/google/googletest.git) registered for path 'casatools/grpc-source/third_party/googletest'
Submodule 'third_party/protobuf' (https://github.com/google/protobuf.git) registered for path 'casatools/grpc-source/third_party/protobuf'
Submodule 'third_party/zlib' (https://github.com/madler/zlib) registered for path 'casatools/grpc-source/third_party/zlib'
Cloning into '/Volumes/ExtData/bamboohome/xml-data/build-dir/CASA-C6CV1-O1P38/casa6/casatools/grpc-source/third_party/abseil-cpp'...
Cloning into '/Volumes/ExtData/bamboohome/xml-data/build-dir/CASA-C6CV1-O1P38/casa6/casatools/grpc-source/third_party/benchmark'...
Cloning into '/Volumes/ExtData/bamboohome/xml-data/build-dir/CASA-C6CV1-O1P38/casa6/casatools/grpc-source/third_party/bloaty'...
Cloning into '/Volumes/ExtData/bamboohome/xml-data/build-dir/CASA-C6CV1-O1P38/casa6/casatools/grpc-source/third_party/boringssl'...
Cloning into '/Volumes/ExtData/bamboohome/xml-data/build-dir/CASA-C6CV1-O1P38/casa6/casatools/grpc-source/third_party/boringssl-with-bazel'...
Cloning into '/Volumes/ExtData/bamboohome/xml-data/build-dir/CASA-C6CV1-O1P38/casa6/casatools/grpc-source/third_party/cares/cares'...
Cloning into '/Volumes/ExtData/bamboohome/xml-data/build-dir/CASA-C6CV1-O1P38/casa6/casatools/grpc-source/third_party/gflags'...
Cloning into '/Volumes/ExtData/bamboohome/xml-data/build-dir/CASA-C6CV1-O1P38/casa6/casatools/grpc-source/third_party/googletest'...
Cloning into '/Volumes/ExtData/bamboohome/xml-data/build-dir/CASA-C6CV1-O1P38/casa6/casatools/grpc-source/third_party/protobuf'...
Cloning into '/Volumes/ExtData/bamboohome/xml-data/build-dir/CASA-C6CV1-O1P38/casa6/casatools/grpc-source/third_party/zlib'...
Submodule 'third_party/googletest' (https://github.com/google/googletest.git) registered for path 'casatools/grpc-source/third_party/bloaty/third_party/googletest'
Submodule 'third_party/libFuzzer' (https://chromium.googlesource.com/chromium/llvm-project/llvm/lib/Fuzzer) registered for path 'casatools/grpc-source/third_party/bloaty/third_party/libFuzzer'
Submodule 'third_party/re2' (https://github.com/google/re2) registered for path 'casatools/grpc-source/third_party/bloaty/third_party/re2'
Cloning into '/Volumes/ExtData/bamboohome/xml-data/build-dir/CASA-C6CV1-O1P38/casa6/casatools/grpc-source/third_party/bloaty/third_party/googletest'...
Cloning into '/Volumes/ExtData/bamboohome/xml-data/build-dir/CASA-C6CV1-O1P38/casa6/casatools/grpc-source/third_party/bloaty/third_party/libFuzzer'...
Cloning into '/Volumes/ExtData/bamboohome/xml-data/build-dir/CASA-C6CV1-O1P38/casa6/casatools/grpc-source/third_party/bloaty/third_party/re2'...
Submodule 'doc' (https://github.com/gflags/gflags.git) registered for path 'casatools/grpc-source/third_party/gflags/doc'
Cloning into '/Volumes/ExtData/bamboohome/xml-data/build-dir/CASA-C6CV1-O1P38/casa6/casatools/grpc-source/third_party/gflags/doc'...
Submodule 'third_party/benchmark' (https://github.com/google/benchmark.git) registered for path 'casatools/grpc-source/third_party/protobuf/third_party/benchmark'
Cloning into '/Volumes/ExtData/bamboohome/xml-data/build-dir/CASA-C6CV1-O1P38/casa6/casatools/grpc-source/third_party/protobuf/third_party/benchmark'...
configure: WARNING: No working MPI compiler could be found, won't use MPI.
package init file 'build/lib.macosx-11.1-x86_64-3.8/casatasks/__xml__/__init__.py' not found (or not a regular file)
package init file 'build/lib.macosx-11.1-x86_64-3.8/casatasks/private/__init__.py' not found (or not a regular file)
error: pathspec 'CAS-13405' did not match any file(s) known to git
/Volumes/ExtData/bamboohome/xml-data/build-dir/CASA-C6CV1-O1P38/casa6/casatasks/build/lib.macosx-11.1-x86_64-3.8/casatasks/private/task_sdimaging.py:197: SyntaxWarning: 'str' object is not callable; perhaps you missed a comma?
  raise RuntimeError("Invalid spw selction, %s ,for MS %d" (str(spw), file_idx))
/Volumes/ExtData/bamboohome/xml-data/build-dir/CASA-C6CV1-O1P38/casa6/casatasks/build/lib.macosx-11.1-x86_64-3.8/casatasks/private/task_plotants.py:317: SyntaxWarning: "is" with a literal. Did you mean "=="?
  if halign is 'center':
/Volumes/ExtData/bamboohome/xml-data/build-dir/CASA-C6CV1-O1P38/casa6/casatasks/build/lib.macosx-11.1-x86_64-3.8/casatasks/private/task_plotants.py:359: SyntaxWarning: "is" with a literal. Did you mean "=="?
  if halign is 'center':
/Volumes/ExtData/bamboohome/xml-data/build-dir/CASA-C6CV1-O1P38/venv/lib/python3.8/site-packages/setuptools/distutils_patch.py:25: UserWarning: Distutils was imported before Setuptools. This usage is discouraged and may exhibit undesirable behaviors or errors. Please use Setuptools' objects directly or at least import Setuptools first.
  warnings.warn(
package init file 'build/lib.macosx-11.1-x86_64-3.8.7.final/casashell/private/__init__.py' not found (or not a regular file)
package init file 'build/lib.macosx-11.1-x86_64-3.8.7.final/casashell/private/ttconfig/__init__.py' not found (or not a regular file)
WARNING: Skipping casadata as it is not installed.
WARNING: Skipping casatelemetry as it is not installed.
WARNING: Skipping casatools as it is not installed.
WARNING: Skipping casatasks as it is not installed.
WARNING: Skipping casashell as it is not installed.
WARNING: Skipping casaviewer as it is not installed.
WARNING: Skipping casaplotms as it is not installed.
WARNING: Skipping grpcio as it is not installed.
WARNING: Skipping protobuf as it is not installed.
Cloning into 'casalith'...
warning: the following paths have collided (e.g. case-sensitive paths
on a case-insensitive filesystem) and only one from the same
colliding group is in the working tree:

  'build-casalith/work/linux/template/lib/mpi/bin/mpiCC'
  'build-casalith/work/linux/template/lib/mpi/bin/mpicc'
  'build-casalith/work/linux/template/lib/mpi/bin/mpiCC-vt'
  'build-casalith/work/linux/template/lib/mpi/bin/mpicc-vt'
  'build-casalith/work/linux/template/lib/mpi/bin/orteCC'
  'build-casalith/work/linux/template/lib/mpi/bin/ortecc'
  'build-casalith/work/linux/template/lib/mpi/bin/vtCC'
  'build-casalith/work/linux/template/lib/mpi/bin/vtcc'
Submodule 'build-casalith/work/casa-pkg' (https://open-bitbucket.nrao.edu/scm/casa/casa-pkg.git) registered for path 'build-casalith/work/casa-pkg'
Cloning into '/Volumes/ExtData/bamboohome/xml-data/build-dir/CASA-C6CV1-O1P38/casa-build-utils/casalith/casalith/build-casalith/work/casa-pkg'...
Switched to a new branch 'CAS-13405'
Build was manually stopped.