simple	20-May-2026 16:39:58	Build PIPESPECS - Pipeline Pull Request Test - PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal - Pipeline PR Test 6.7.4 #2 (PIPESPECS-PPRT589-PPRT674-2) is being prepared for building on agent casaci-4.cv.nrao.edu, bamboo version: 9.6.17
simple	20-May-2026 16:39:58	Remote agent on host casaci-4.cv.nrao.edu
simple	20-May-2026 16:39:58	Build working directory is /opt/ci_workspace/casa/bamboo/agent6/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674
simple	20-May-2026 16:39:58	Executing build PIPESPECS - Pipeline Pull Request Test - PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal - Pipeline PR Test 6.7.4 #2 (PIPESPECS-PPRT589-PPRT674-2)
simple	20-May-2026 16:39:58	Starting task 'Source Code Checkout' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout'
simple	20-May-2026 16:39:58	Build always requires a clean checkout
simple	20-May-2026 16:39:58	Cleaning build directory '/opt/ci_workspace/casa/bamboo/agent6/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674'
simple	20-May-2026 16:39:58	Checking out into /opt/ci_workspace/casa/bamboo/agent6/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674
simple	20-May-2026 16:39:58	Updating source code to revision: 9aa8f21df25a7564190c77409285e2ee6c8b9efa
simple	20-May-2026 16:39:58	/usr/bin/git log -1 --encoding=UTF-8 --format=%H HEAD
simple	20-May-2026 16:39:58	/usr/bin/git ls-remote ssh://fd0df5a6-18ef-47e3-b2cc-6327068240d7@127.0.0.1:40697/pipe/pipeline.git
simple	20-May-2026 16:39:59	Fetching 'refs/heads/PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal' from 'ssh://git@open-bitbucket.nrao.edu:7999/pipe/pipeline.git'.
simple	20-May-2026 16:39:59	/usr/bin/git fetch -f -p ssh://fd0df5a6-18ef-47e3-b2cc-6327068240d7@127.0.0.1:40697/pipe/pipeline.git +refs/heads/PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal:refs/heads/PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal --update-head-ok --progress --verbose
simple	20-May-2026 16:39:59	Warning: Permanently added '[127.0.0.1]:40697' (RSA) to the list of known hosts.
simple	20-May-2026 16:39:59	X11 forwarding request failed on channel 0
simple	20-May-2026 16:39:59	From ssh://127.0.0.1:40697/pipe/pipeline
simple	20-May-2026 16:39:59	 = [up to date]          PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal -> PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal
simple	20-May-2026 16:39:59	/usr/bin/git log -1 --encoding=UTF-8 --format=%H 9aa8f21df25a7564190c77409285e2ee6c8b9efa
simple	20-May-2026 16:39:59	Checking out revision 9aa8f21df25a7564190c77409285e2ee6c8b9efa.
simple	20-May-2026 16:39:59	Creating local git repository in '/opt/ci_workspace/casa/bamboo/agent6/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674/.git'.
simple	20-May-2026 16:39:59	/usr/bin/git clone /opt/ci_workspace/casa/bamboo/agent6/xml-data/build-dir/_git-repositories-cache/0f87d47f932221ddde4439d2df095beaaa849915 --shared --no-checkout '-c filter.lfs.smudge=' '-c filter.lfs.required=false' /opt/ci_workspace/casa/bamboo/agent6/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674
simple	20-May-2026 16:39:59	Cloning into '/opt/ci_workspace/casa/bamboo/agent6/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674'...
simple	20-May-2026 16:39:59	error: invalid key:  filter.lfs.smudge
simple	20-May-2026 16:39:59	fatal: unable to write parameters to config file
error	20-May-2026 16:39:59	Checkout to revision 9aa8f21df25a7564190c77409285e2ee6c8b9efa has failed.
simple	20-May-2026 16:39:59	/usr/bin/git remote set-url origin file:///opt/ci_workspace/casa/bamboo/agent6/xml-data/build-dir/_git-repositories-cache/0f87d47f932221ddde4439d2df095beaaa849915
simple	20-May-2026 16:39:59	fatal: not a git repository (or any parent up to mount point /opt)
simple	20-May-2026 16:39:59	Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
simple	20-May-2026 16:39:59	/usr/bin/git log -1 --encoding=UTF-8 --format=%H HEAD
simple	20-May-2026 16:39:59	Warning: failed to checkout source code to directory '/opt/ci_workspace/casa/bamboo/agent6/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674', trying to recover...
simple	20-May-2026 16:39:59	Cleaned source directory '/opt/ci_workspace/casa/bamboo/agent6/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674'...
simple	20-May-2026 16:39:59	Checking out revision 9aa8f21df25a7564190c77409285e2ee6c8b9efa.
simple	20-May-2026 16:39:59	Creating local git repository in '/opt/ci_workspace/casa/bamboo/agent6/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674/.git'.
simple	20-May-2026 16:39:59	/usr/bin/git clone /opt/ci_workspace/casa/bamboo/agent6/xml-data/build-dir/_git-repositories-cache/0f87d47f932221ddde4439d2df095beaaa849915 --shared --no-checkout '-c filter.lfs.smudge=' '-c filter.lfs.required=false' /opt/ci_workspace/casa/bamboo/agent6/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674
simple	20-May-2026 16:39:59	Cloning into '/opt/ci_workspace/casa/bamboo/agent6/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674'...
simple	20-May-2026 16:39:59	error: invalid key:  filter.lfs.smudge
simple	20-May-2026 16:39:59	fatal: unable to write parameters to config file
error	20-May-2026 16:39:59	Checkout to revision 9aa8f21df25a7564190c77409285e2ee6c8b9efa has failed.
simple	20-May-2026 16:39:59	/usr/bin/git remote set-url origin file:///opt/ci_workspace/casa/bamboo/agent6/xml-data/build-dir/_git-repositories-cache/0f87d47f932221ddde4439d2df095beaaa849915
simple	20-May-2026 16:39:59	fatal: not a git repository (or any parent up to mount point /opt)
simple	20-May-2026 16:39:59	Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
simple	20-May-2026 16:39:59	Failed to execute git operations on any configured Bitbucket instances. Proceeding with final failing...
simple	20-May-2026 16:39:59	Updating source code to revision: 9aa8f21df25a7564190c77409285e2ee6c8b9efa
simple	20-May-2026 16:39:59	/usr/bin/git log -1 --encoding=UTF-8 --format=%H HEAD
simple	20-May-2026 16:39:59	Fetching 'refs/heads/PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal' from 'ssh://git@open-bitbucket.nrao.edu:7999/pipe/pipeline.git'.
simple	20-May-2026 16:39:59	/usr/bin/git fetch -f -p ssh://06667a97-aae8-4246-b92c-c0f9568f6d00@127.0.0.1:40697/pipe/pipeline.git +refs/heads/PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal:refs/heads/PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal --update-head-ok --progress --verbose
simple	20-May-2026 16:39:59	Warning: Permanently added '[127.0.0.1]:40697' (RSA) to the list of known hosts.
simple	20-May-2026 16:39:59	X11 forwarding request failed on channel 0
simple	20-May-2026 16:39:59	From ssh://127.0.0.1:40697/pipe/pipeline
simple	20-May-2026 16:39:59	 = [up to date]          PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal -> PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal
simple	20-May-2026 16:39:59	/usr/bin/git log -1 --encoding=UTF-8 --format=%H 9aa8f21df25a7564190c77409285e2ee6c8b9efa
simple	20-May-2026 16:39:59	Checking out revision 9aa8f21df25a7564190c77409285e2ee6c8b9efa.
simple	20-May-2026 16:39:59	Creating local git repository in '/opt/ci_workspace/casa/bamboo/agent6/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674/.git'.
simple	20-May-2026 16:39:59	/usr/bin/git clone /opt/ci_workspace/casa/bamboo/agent6/xml-data/build-dir/_git-repositories-cache/0f87d47f932221ddde4439d2df095beaaa849915 --shared --no-checkout '-c filter.lfs.smudge=' '-c filter.lfs.required=false' /opt/ci_workspace/casa/bamboo/agent6/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674
simple	20-May-2026 16:39:59	Cloning into '/opt/ci_workspace/casa/bamboo/agent6/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674'...
simple	20-May-2026 16:39:59	error: invalid key:  filter.lfs.smudge
simple	20-May-2026 16:39:59	fatal: unable to write parameters to config file
error	20-May-2026 16:39:59	Checkout to revision 9aa8f21df25a7564190c77409285e2ee6c8b9efa has failed.
simple	20-May-2026 16:39:59	/usr/bin/git remote set-url origin file:///opt/ci_workspace/casa/bamboo/agent6/xml-data/build-dir/_git-repositories-cache/0f87d47f932221ddde4439d2df095beaaa849915
simple	20-May-2026 16:39:59	fatal: not a git repository (or any parent up to mount point /opt)
simple	20-May-2026 16:39:59	Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
simple	20-May-2026 16:39:59	/usr/bin/git log -1 --encoding=UTF-8 --format=%H HEAD
simple	20-May-2026 16:39:59	Warning: failed to checkout source code to directory '/opt/ci_workspace/casa/bamboo/agent6/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674', trying to recover...
simple	20-May-2026 16:39:59	Cleaned source directory '/opt/ci_workspace/casa/bamboo/agent6/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674'...
simple	20-May-2026 16:39:59	Checking out revision 9aa8f21df25a7564190c77409285e2ee6c8b9efa.
simple	20-May-2026 16:39:59	Creating local git repository in '/opt/ci_workspace/casa/bamboo/agent6/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674/.git'.
simple	20-May-2026 16:39:59	/usr/bin/git clone /opt/ci_workspace/casa/bamboo/agent6/xml-data/build-dir/_git-repositories-cache/0f87d47f932221ddde4439d2df095beaaa849915 --shared --no-checkout '-c filter.lfs.smudge=' '-c filter.lfs.required=false' /opt/ci_workspace/casa/bamboo/agent6/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674
simple	20-May-2026 16:39:59	Cloning into '/opt/ci_workspace/casa/bamboo/agent6/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674'...
simple	20-May-2026 16:39:59	error: invalid key:  filter.lfs.smudge
simple	20-May-2026 16:39:59	fatal: unable to write parameters to config file
error	20-May-2026 16:39:59	Checkout to revision 9aa8f21df25a7564190c77409285e2ee6c8b9efa has failed.
simple	20-May-2026 16:39:59	/usr/bin/git remote set-url origin file:///opt/ci_workspace/casa/bamboo/agent6/xml-data/build-dir/_git-repositories-cache/0f87d47f932221ddde4439d2df095beaaa849915
simple	20-May-2026 16:39:59	fatal: not a git repository (or any parent up to mount point /opt)
simple	20-May-2026 16:39:59	Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
simple	20-May-2026 16:39:59	Failed to execute git operations on any configured Bitbucket instances. Proceeding with final failing...
simple	20-May-2026 16:39:59	Updating source code to revision: 9aa8f21df25a7564190c77409285e2ee6c8b9efa
simple	20-May-2026 16:39:59	/usr/bin/git log -1 --encoding=UTF-8 --format=%H HEAD
simple	20-May-2026 16:39:59	Fetching 'refs/heads/PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal' from 'ssh://git@open-bitbucket.nrao.edu:7999/pipe/pipeline.git'.
simple	20-May-2026 16:39:59	/usr/bin/git fetch -f -p ssh://02b34e28-7e50-4c7d-bca4-0403a75882b6@127.0.0.1:40697/pipe/pipeline.git +refs/heads/PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal:refs/heads/PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal --update-head-ok --progress --verbose
simple	20-May-2026 16:39:59	Warning: Permanently added '[127.0.0.1]:40697' (RSA) to the list of known hosts.
simple	20-May-2026 16:39:59	X11 forwarding request failed on channel 0
simple	20-May-2026 16:39:59	From ssh://127.0.0.1:40697/pipe/pipeline
simple	20-May-2026 16:39:59	 = [up to date]          PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal -> PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal
simple	20-May-2026 16:39:59	/usr/bin/git log -1 --encoding=UTF-8 --format=%H 9aa8f21df25a7564190c77409285e2ee6c8b9efa
simple	20-May-2026 16:39:59	Checking out revision 9aa8f21df25a7564190c77409285e2ee6c8b9efa.
simple	20-May-2026 16:39:59	Creating local git repository in '/opt/ci_workspace/casa/bamboo/agent6/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674/.git'.
simple	20-May-2026 16:39:59	/usr/bin/git clone /opt/ci_workspace/casa/bamboo/agent6/xml-data/build-dir/_git-repositories-cache/0f87d47f932221ddde4439d2df095beaaa849915 --shared --no-checkout '-c filter.lfs.smudge=' '-c filter.lfs.required=false' /opt/ci_workspace/casa/bamboo/agent6/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674
simple	20-May-2026 16:39:59	Cloning into '/opt/ci_workspace/casa/bamboo/agent6/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674'...
simple	20-May-2026 16:39:59	error: invalid key:  filter.lfs.smudge
simple	20-May-2026 16:39:59	fatal: unable to write parameters to config file
error	20-May-2026 16:39:59	Checkout to revision 9aa8f21df25a7564190c77409285e2ee6c8b9efa has failed.
simple	20-May-2026 16:39:59	/usr/bin/git remote set-url origin file:///opt/ci_workspace/casa/bamboo/agent6/xml-data/build-dir/_git-repositories-cache/0f87d47f932221ddde4439d2df095beaaa849915
simple	20-May-2026 16:39:59	fatal: not a git repository (or any parent up to mount point /opt)
simple	20-May-2026 16:39:59	Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
simple	20-May-2026 16:39:59	/usr/bin/git log -1 --encoding=UTF-8 --format=%H HEAD
simple	20-May-2026 16:39:59	Warning: failed to checkout source code to directory '/opt/ci_workspace/casa/bamboo/agent6/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674', trying to recover...
simple	20-May-2026 16:39:59	Cleaned source directory '/opt/ci_workspace/casa/bamboo/agent6/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674'...
simple	20-May-2026 16:39:59	Checking out revision 9aa8f21df25a7564190c77409285e2ee6c8b9efa.
simple	20-May-2026 16:39:59	Creating local git repository in '/opt/ci_workspace/casa/bamboo/agent6/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674/.git'.
simple	20-May-2026 16:39:59	/usr/bin/git clone /opt/ci_workspace/casa/bamboo/agent6/xml-data/build-dir/_git-repositories-cache/0f87d47f932221ddde4439d2df095beaaa849915 --shared --no-checkout '-c filter.lfs.smudge=' '-c filter.lfs.required=false' /opt/ci_workspace/casa/bamboo/agent6/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674
simple	20-May-2026 16:39:59	Cloning into '/opt/ci_workspace/casa/bamboo/agent6/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674'...
simple	20-May-2026 16:39:59	error: invalid key:  filter.lfs.smudge
simple	20-May-2026 16:39:59	fatal: unable to write parameters to config file
error	20-May-2026 16:39:59	Checkout to revision 9aa8f21df25a7564190c77409285e2ee6c8b9efa has failed.
simple	20-May-2026 16:39:59	/usr/bin/git remote set-url origin file:///opt/ci_workspace/casa/bamboo/agent6/xml-data/build-dir/_git-repositories-cache/0f87d47f932221ddde4439d2df095beaaa849915
simple	20-May-2026 16:39:59	fatal: not a git repository (or any parent up to mount point /opt)
simple	20-May-2026 16:39:59	Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
simple	20-May-2026 16:39:59	Failed to execute git operations on any configured Bitbucket instances. Proceeding with final failing...
error	20-May-2026 16:39:59	Error occurred while running Task '(1)' of type com.atlassian.bamboo.plugins.vcs:task.vcs.checkout.
error	20-May-2026 16:39:59	java.lang.RuntimeException: com.atlassian.bamboo.plugins.stash.repository.StashRepositoryException: Could not connect to Bitbucket
error	20-May-2026 16:39:59		at com.atlassian.bamboo.executor.RetryingTaskExecutor.rerun(RetryingTaskExecutor.java:142)
error	20-May-2026 16:39:59		at com.atlassian.bamboo.executor.RetryingTaskExecutor.runTask(RetryingTaskExecutor.java:99)
error	20-May-2026 16:39:59		at com.atlassian.bamboo.executor.RetryingTaskExecutor.retry(RetryingTaskExecutor.java:208)
error	20-May-2026 16:39:59		at com.atlassian.bamboo.executor.RetryingTaskExecutor.retry(RetryingTaskExecutor.java:189)
error	20-May-2026 16:39:59		at com.atlassian.bamboo.plugins.vcs.task.VcsCheckoutTask.execute(VcsCheckoutTask.java:130)
error	20-May-2026 16:39:59		at com.atlassian.bamboo.task.TaskExecutorImpl.lambda$executeTasks$3(TaskExecutorImpl.java:323)
error	20-May-2026 16:39:59		at com.atlassian.bamboo.task.TaskExecutorImpl.executeTaskWithPrePostActions(TaskExecutorImpl.java:258)
error	20-May-2026 16:39:59		at com.atlassian.bamboo.task.TaskExecutorImpl.executeTasks(TaskExecutorImpl.java:323)
error	20-May-2026 16:39:59		at com.atlassian.bamboo.task.TaskExecutorImpl.executePreparationTasks(TaskExecutorImpl.java:97)
error	20-May-2026 16:39:59		at com.atlassian.bamboo.build.pipeline.tasks.PrepareBuildTask.call(PrepareBuildTask.java:81)
error	20-May-2026 16:39:59		at com.atlassian.bamboo.v2.build.agent.DefaultBuildAgent.executeBuildPhase(DefaultBuildAgent.java:242)
error	20-May-2026 16:39:59		at com.atlassian.bamboo.v2.build.agent.DefaultBuildAgent.build(DefaultBuildAgent.java:214)
error	20-May-2026 16:39:59		at com.atlassian.bamboo.v2.build.agent.BuildAgentControllerImpl.lambda$waitAndPerformBuild$0(BuildAgentControllerImpl.java:183)
error	20-May-2026 16:39:59		at com.atlassian.bamboo.variable.CustomVariableContextImpl.withVariableSubstitutor(CustomVariableContextImpl.java:115)
error	20-May-2026 16:39:59		at com.atlassian.bamboo.v2.build.agent.BuildAgentControllerImpl.waitAndPerformBuild(BuildAgentControllerImpl.java:176)
error	20-May-2026 16:39:59		at com.atlassian.bamboo.v2.build.agent.DefaultBuildAgent.lambda$start$0(DefaultBuildAgent.java:159)
error	20-May-2026 16:39:59		at com.atlassian.bamboo.security.ImpersonationHelper.runWith(ImpersonationHelper.java:26)
error	20-May-2026 16:39:59		at com.atlassian.bamboo.security.ImpersonationHelper.runWithSystemAuthority(ImpersonationHelper.java:17)
error	20-May-2026 16:39:59		at com.atlassian.bamboo.security.ImpersonationHelper.lambda$makeRunnableWithSystemAuthority$0(ImpersonationHelper.java:38)
error	20-May-2026 16:39:59		at java.base/java.lang.Thread.run(Thread.java:840)
error	20-May-2026 16:39:59	Caused by: com.atlassian.bamboo.plugins.stash.repository.StashRepositoryException: Could not connect to Bitbucket
error	20-May-2026 16:39:59		at com.atlassian.bamboo.plugins.stash.v2.BitbucketServerWorkingCopyManager.lambda$retrieveSourceCode$4(BitbucketServerWorkingCopyManager.java:109)
error	20-May-2026 16:39:59		at com.atlassian.bamboo.plugins.stash.v2.AbstractBitbucketServerExecutor.executeOnMirrorWithPrimaryFallback(AbstractBitbucketServerExecutor.java:61)
error	20-May-2026 16:39:59		at com.atlassian.bamboo.plugins.stash.v2.BitbucketServerWorkingCopyManager.retrieveSourceCode(BitbucketServerWorkingCopyManager.java:103)
error	20-May-2026 16:39:59		at com.atlassian.bamboo.plugins.vcs.task.VcsCheckoutTask.fillWorkingDirFromVcs(VcsCheckoutTask.java:214)
error	20-May-2026 16:39:59		at com.atlassian.bamboo.plugins.vcs.task.VcsCheckoutTask.lambda$execute$0(VcsCheckoutTask.java:131)
error	20-May-2026 16:39:59		at com.atlassian.bamboo.executor.RetryingTaskExecutor.rerun(RetryingTaskExecutor.java:112)
error	20-May-2026 16:39:59		... 19 more
error	20-May-2026 16:39:59	Caused by: com.atlassian.bamboo.plugins.git.GitCommandException: command [/usr/bin/git remote set-url origin file:///opt/ci_workspace/casa/bamboo/agent6/xml-data/build-dir/_git-repositories-cache/0f87d47f932221ddde4439d2df095beaaa849915] failed with code 128. Working directory was [/opt/ci_workspace/casa/bamboo/agent6/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674]., stderr:
error	20-May-2026 16:39:59	fatal: not a git repository (or any parent up to mount point /opt)
error	20-May-2026 16:39:59	Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
error	20-May-2026 16:39:59		at com.atlassian.bamboo.plugins.git.GitCommandProcessor.runCommand(GitCommandProcessor.java:792)
error	20-May-2026 16:39:59		at com.atlassian.bamboo.plugins.git.GitCommandProcessor.runCommand(GitCommandProcessor.java:721)
error	20-May-2026 16:39:59		at com.atlassian.bamboo.plugins.git.GitCommandProcessor.runCommand(GitCommandProcessor.java:712)
error	20-May-2026 16:39:59		at com.atlassian.bamboo.plugins.git.GitCommandProcessor.setOrigin(GitCommandProcessor.java:606)
error	20-May-2026 16:39:59		at com.atlassian.bamboo.plugins.git.GitCommandProcessor.setOriginToLocalDirectory(GitCommandProcessor.java:663)
error	20-May-2026 16:39:59		at com.atlassian.bamboo.plugins.git.NativeGitOperationHelper.checkout(NativeGitOperationHelper.java:509)
error	20-May-2026 16:39:59		at com.atlassian.bamboo.plugins.git.v2.GitWorkingCopyManager.lambda$checkout$1(GitWorkingCopyManager.java:262)
error	20-May-2026 16:39:59		at io.atlassian.util.concurrent.ManagedLocks$ManagedLockImpl.withLock(ManagedLocks.java:293)
error	20-May-2026 16:39:59		at com.atlassian.bamboo.plugins.git.GitCacheDirectory$LoggingManagedLock.withLock(GitCacheDirectory.java:48)
error	20-May-2026 16:39:59		at com.atlassian.bamboo.plugins.git.v2.GitWorkingCopyManager.checkout(GitWorkingCopyManager.java:250)
error	20-May-2026 16:39:59		at com.atlassian.bamboo.plugins.git.v2.GitWorkingCopyManager.checkout(GitWorkingCopyManager.java:202)
error	20-May-2026 16:39:59		at com.atlassian.bamboo.plugins.git.v2.GitWorkingCopyManager.retrieveSourceCode(GitWorkingCopyManager.java:122)
error	20-May-2026 16:39:59		at com.atlassian.bamboo.plugins.stash.v2.BitbucketServerWorkingCopyManager.lambda$retrieveSourceCode$4(BitbucketServerWorkingCopyManager.java:105)
error	20-May-2026 16:39:59		... 24 more
error	20-May-2026 16:39:59	Failed to prepare the build 'PIPESPECS - Pipeline Pull Request Test - PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal - Pipeline PR Test 6.7.4 #2 (PIPESPECS-PPRT589-PPRT674-2)'
command	20-May-2026 16:39:59	Substituting variable: ${bamboo.agentId} with 153550854
command	20-May-2026 16:39:59	Substituting variable: ${bamboo.agentId} with 153550854
command	20-May-2026 16:39:59	Substituting variable: ${bamboo.agentId} with 153550854
simple	20-May-2026 16:39:59	Starting task 'Cleanup' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script'
command	20-May-2026 16:39:59	Beginning to execute external process for build 'PIPESPECS - Pipeline Pull Request Test - PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal - Pipeline PR Test 6.7.4 #2 (PIPESPECS-PPRT589-PPRT674-2)'\n ... running command line: \n/opt/ci_workspace/casa/bamboo/agent6/temp/PIPESPECS-PPRT589-PPRT674-2-ScriptBuildTask-18288353315909242468.sh\n ... in: /opt/ci_workspace/casa/bamboo/agent6/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674\nbamboo_planRepository_1_branch=PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal\nbamboo_capability_agenttype=dockertest\nbamboo_planRepository_1_branchDisplayName=PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal\nbamboo_resultsUrl=https://open-bamboo.nrao.edu/browse/PIPESPECS-PPRT589-PPRT674-2\nbamboo_build_working_directory=/opt/ci_workspace/casa/bamboo/agent6/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674\nbamboo_planRepository_1_name=Pipeline\nbamboo_buildKey=PIPESPECS-PPRT589-PPRT674\nbamboo_shortPlanName=Pipeline Pull Request Test\nbamboo_capability_hostname=casaci-4\nbamboo_planRepository_name=Pipeline\nbamboo_buildNumber=2\nbamboo_simpleBuildTimeStamp=20260520163958\nbamboo_shortJobName=Pipeline PR Test 6.7.4\nbamboo_buildResultsUrl=https://open-bamboo.nrao.edu/browse/PIPESPECS-PPRT589-PPRT674-2\nbamboo_username=vsuorant@nrao.edu\nbamboo_planRepository_repositoryUrl=ssh://git@open-bitbucket.nrao.edu:7999/pipe/pipeline.git\nbamboo_ManualBuildTriggerReason_stageName=Default Stage\nbamboo_agentId=153550854\nbamboo_planName=PIPESPECS - Pipeline Pull Request Test - PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal\nbamboo_shortPlanKey=PPRT589\nbamboo_repository_pr_key=1828\nbamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_8=/opt/ci_workspace/casa/bamboo/agent5/temp/PIPESPECS-PPRT589-PPRT674-2-ScriptBuildTask-5228101050729778722.sh\nbamboo_al_password=********\nbamboo_shortJobKey=PPRT674\nbamboo_signature=3116870A355D5035B7A1486D75B5396BAFC8FADE\nbamboo_planRepository_revision=9aa8f21df25a7564190c77409285e2ee6c8b9efa\nbamboo_buildTimeStamp=2026-05-20T16:39:58.234-04:00\nbamboo_planRepository_previousRevision=9aa8f21df25a7564190c77409285e2ee6c8b9efa\nbamboo_repository_pr_targetBranch=main\nbamboo_buildResultKey=PIPESPECS-PPRT589-PPRT674-2\nbamboo_buildPlanName=PIPESPECS - Pipeline Pull Request Test - PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal - Pipeline PR Test 6.7.4\nbamboo_planRepository_1_revision=9aa8f21df25a7564190c77409285e2ee6c8b9efa\nbamboo_dependenciesDisabled=false\nbamboo_repository_pr_sourceBranch=PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal\nbamboo_buildFailed=false\nbamboo_capability_system_docker_executable=/usr/bin/docker\nbamboo_planRepository_branch=PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal\nbamboo_agentWorkingDirectory=/opt/ci_workspace/casa/bamboo/agent6/xml-data/build-dir\nbamboo_capability_system_git_executable=/usr/bin/git\nbamboo_capability_system_jdk_JDK_17=/usr/lib/jvm/java-17-openjdk-17.0.19.0.10-2.el9.x86_64\nbamboo_planRepository_1_previousRevision=9aa8f21df25a7564190c77409285e2ee6c8b9efa\nbamboo_capability_system_jdk_JDK_17_0_19__JRE_=/usr/lib/jvm/java-17-openjdk-17.0.19.0.10-2.el9.x86_64\nbamboo_planRepository_branchDisplayName=PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal\nbamboo_planRepository_1_type=bbserver\nbamboo_planRepository_branchName=PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal\nbamboo_shortPlanBranchName=PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal\nbamboo_capability_system_jdk_JDK=/usr/lib/jvm/java-17-openjdk-17.0.19.0.10-2.el9.x86_64\nbamboo_plan_storageTag=plan-158925507\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=bbserver\nbamboo_git_cache_directory=/opt/ci_workspace/casa/bamboo/agent6/xml-data/build-dir/_git-repositories-cache\nbamboo_ManualBuildTriggerReason_userName=vsuorant\nbamboo_tmp_directory=/opt/ci_workspace/casa/bamboo/agent6/temp\nbamboo_working_directory=/opt/ci_workspace/casa/bamboo/agent6/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674\nbamboo_planKey=PIPESPECS-PPRT589\nbamboo_RerunBuildTriggerReason_noOfRetries=8\nbamboo_planRepository_1_repositoryUrl=ssh://git@open-bitbucket.nrao.edu:7999/pipe/pipeline.git\nbamboo_planRepository_username=\nbamboo_triggerReason_key=com.atlassian.bamboo.plugin.system.triggerReason:RerunBuildTriggerReason\nbamboo_planRepository_1_branchName=PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal\n
build	20-May-2026 16:39:59	Starting cleanup
build	20-May-2026 16:39:59	Removed pipelinetest-153550854
simple	20-May-2026 16:39:59	Finished task 'Cleanup' with result: Success
simple	20-May-2026 16:40:00	Running on server: post build plugin 'Build Hanging Detection Configuration'
simple	20-May-2026 16:40:00	Running on server: post build plugin 'NCover Results Collector'
simple	20-May-2026 16:40:00	Running on server: post build plugin 'Build Labeller'
simple	20-May-2026 16:40:00	Running on server: post build plugin 'Clover Delta Calculator'
simple	20-May-2026 16:40:00	Running on server: post build plugin 'Maven Dependencies Postprocessor'
simple	20-May-2026 16:40:00	All post build plugins have finished
simple	20-May-2026 16:40:00	Generating build results summary...
simple	20-May-2026 16:40:00	Saving build results to disk...
simple	20-May-2026 16:40:00	Store variable context...
simple	20-May-2026 16:40:00	Finished building PIPESPECS-PPRT589-PPRT674-2.