simple	20-May-2026 16:19:54	Build PIPESPECS - Pipeline Pull Request Test - PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal - Pipeline PR Test 6.7.4 #2 (PIPESPECS-PPRT589-PPRT674-2) is being prepared for building on agent casaci-4.cv.nrao.edu, bamboo version: 9.6.17
simple	20-May-2026 16:19:54	Remote agent on host casaci-4.cv.nrao.edu
simple	20-May-2026 16:19:54	Build working directory is /opt/ci_workspace/casa/bamboo/agent5/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674
simple	20-May-2026 16:19:54	Executing build PIPESPECS - Pipeline Pull Request Test - PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal - Pipeline PR Test 6.7.4 #2 (PIPESPECS-PPRT589-PPRT674-2)
simple	20-May-2026 16:19:54	Starting task 'Source Code Checkout' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout'
simple	20-May-2026 16:19:54	Build always requires a clean checkout
simple	20-May-2026 16:19:54	Cleaning build directory '/opt/ci_workspace/casa/bamboo/agent5/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674'
simple	20-May-2026 16:19:54	Checking out into /opt/ci_workspace/casa/bamboo/agent5/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674
simple	20-May-2026 16:19:54	Updating source code to revision: 9aa8f21df25a7564190c77409285e2ee6c8b9efa
simple	20-May-2026 16:19:55	Fetching 'refs/heads/PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal' from 'ssh://git@open-bitbucket.nrao.edu:7999/pipe/pipeline.git'.
simple	20-May-2026 16:19:55	Warning: Permanently added '[127.0.0.1]:37087' (RSA) to the list of known hosts.
simple	20-May-2026 16:19:55	X11 forwarding request failed on channel 0
simple	20-May-2026 16:19:55	Checking out revision 9aa8f21df25a7564190c77409285e2ee6c8b9efa.
simple	20-May-2026 16:19:55	Creating local git repository in '/opt/ci_workspace/casa/bamboo/agent5/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674/.git'.
simple	20-May-2026 16:19:55	Cloning into '/opt/ci_workspace/casa/bamboo/agent5/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674'...
simple	20-May-2026 16:19:55	error: invalid key:  filter.lfs.smudge
simple	20-May-2026 16:19:55	fatal: unable to write parameters to config file
error	20-May-2026 16:19:55	Checkout to revision 9aa8f21df25a7564190c77409285e2ee6c8b9efa has failed.
simple	20-May-2026 16:19:55	fatal: not a git repository (or any parent up to mount point /opt)
simple	20-May-2026 16:19:55	Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
simple	20-May-2026 16:19:55	Warning: failed to checkout source code to directory '/opt/ci_workspace/casa/bamboo/agent5/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674', trying to recover...
simple	20-May-2026 16:19:55	Cleaned source directory '/opt/ci_workspace/casa/bamboo/agent5/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674'...
simple	20-May-2026 16:19:55	Checking out revision 9aa8f21df25a7564190c77409285e2ee6c8b9efa.
simple	20-May-2026 16:19:55	Creating local git repository in '/opt/ci_workspace/casa/bamboo/agent5/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674/.git'.
simple	20-May-2026 16:19:55	Cloning into '/opt/ci_workspace/casa/bamboo/agent5/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674'...
simple	20-May-2026 16:19:55	error: invalid key:  filter.lfs.smudge
simple	20-May-2026 16:19:55	fatal: unable to write parameters to config file
error	20-May-2026 16:19:55	Checkout to revision 9aa8f21df25a7564190c77409285e2ee6c8b9efa has failed.
simple	20-May-2026 16:19:55	fatal: not a git repository (or any parent up to mount point /opt)
simple	20-May-2026 16:19:55	Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
simple	20-May-2026 16:19:55	Failed to execute git operations on any configured Bitbucket instances. Proceeding with final failing...
simple	20-May-2026 16:19:55	Updating source code to revision: 9aa8f21df25a7564190c77409285e2ee6c8b9efa
simple	20-May-2026 16:19:55	Fetching 'refs/heads/PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal' from 'ssh://git@open-bitbucket.nrao.edu:7999/pipe/pipeline.git'.
simple	20-May-2026 16:19:55	Warning: Permanently added '[127.0.0.1]:37087' (RSA) to the list of known hosts.
simple	20-May-2026 16:19:55	X11 forwarding request failed on channel 0
simple	20-May-2026 16:19:55	Checking out revision 9aa8f21df25a7564190c77409285e2ee6c8b9efa.
simple	20-May-2026 16:19:55	Creating local git repository in '/opt/ci_workspace/casa/bamboo/agent5/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674/.git'.
simple	20-May-2026 16:19:55	Cloning into '/opt/ci_workspace/casa/bamboo/agent5/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674'...
simple	20-May-2026 16:19:55	error: invalid key:  filter.lfs.smudge
simple	20-May-2026 16:19:55	fatal: unable to write parameters to config file
error	20-May-2026 16:19:55	Checkout to revision 9aa8f21df25a7564190c77409285e2ee6c8b9efa has failed.
simple	20-May-2026 16:19:55	fatal: not a git repository (or any parent up to mount point /opt)
simple	20-May-2026 16:19:55	Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
simple	20-May-2026 16:19:55	Warning: failed to checkout source code to directory '/opt/ci_workspace/casa/bamboo/agent5/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674', trying to recover...
simple	20-May-2026 16:19:55	Cleaned source directory '/opt/ci_workspace/casa/bamboo/agent5/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674'...
simple	20-May-2026 16:19:55	Checking out revision 9aa8f21df25a7564190c77409285e2ee6c8b9efa.
simple	20-May-2026 16:19:55	Creating local git repository in '/opt/ci_workspace/casa/bamboo/agent5/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674/.git'.
simple	20-May-2026 16:19:55	Cloning into '/opt/ci_workspace/casa/bamboo/agent5/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674'...
simple	20-May-2026 16:19:55	error: invalid key:  filter.lfs.smudge
simple	20-May-2026 16:19:55	fatal: unable to write parameters to config file
error	20-May-2026 16:19:55	Checkout to revision 9aa8f21df25a7564190c77409285e2ee6c8b9efa has failed.
simple	20-May-2026 16:19:55	fatal: not a git repository (or any parent up to mount point /opt)
simple	20-May-2026 16:19:55	Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
simple	20-May-2026 16:19:55	Failed to execute git operations on any configured Bitbucket instances. Proceeding with final failing...
simple	20-May-2026 16:19:56	Updating source code to revision: 9aa8f21df25a7564190c77409285e2ee6c8b9efa
simple	20-May-2026 16:19:56	Fetching 'refs/heads/PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal' from 'ssh://git@open-bitbucket.nrao.edu:7999/pipe/pipeline.git'.
simple	20-May-2026 16:19:56	Warning: Permanently added '[127.0.0.1]:37087' (RSA) to the list of known hosts.
simple	20-May-2026 16:19:56	X11 forwarding request failed on channel 0
simple	20-May-2026 16:19:56	Checking out revision 9aa8f21df25a7564190c77409285e2ee6c8b9efa.
simple	20-May-2026 16:19:56	Creating local git repository in '/opt/ci_workspace/casa/bamboo/agent5/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674/.git'.
simple	20-May-2026 16:19:56	Cloning into '/opt/ci_workspace/casa/bamboo/agent5/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674'...
simple	20-May-2026 16:19:56	error: invalid key:  filter.lfs.smudge
simple	20-May-2026 16:19:56	fatal: unable to write parameters to config file
error	20-May-2026 16:19:56	Checkout to revision 9aa8f21df25a7564190c77409285e2ee6c8b9efa has failed.
simple	20-May-2026 16:19:56	fatal: not a git repository (or any parent up to mount point /opt)
simple	20-May-2026 16:19:56	Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
simple	20-May-2026 16:19:56	Warning: failed to checkout source code to directory '/opt/ci_workspace/casa/bamboo/agent5/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674', trying to recover...
simple	20-May-2026 16:19:56	Cleaned source directory '/opt/ci_workspace/casa/bamboo/agent5/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674'...
simple	20-May-2026 16:19:56	Checking out revision 9aa8f21df25a7564190c77409285e2ee6c8b9efa.
simple	20-May-2026 16:19:56	Creating local git repository in '/opt/ci_workspace/casa/bamboo/agent5/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674/.git'.
simple	20-May-2026 16:19:56	Cloning into '/opt/ci_workspace/casa/bamboo/agent5/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674'...
simple	20-May-2026 16:19:56	error: invalid key:  filter.lfs.smudge
simple	20-May-2026 16:19:56	fatal: unable to write parameters to config file
error	20-May-2026 16:19:56	Checkout to revision 9aa8f21df25a7564190c77409285e2ee6c8b9efa has failed.
simple	20-May-2026 16:19:56	fatal: not a git repository (or any parent up to mount point /opt)
simple	20-May-2026 16:19:56	Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
simple	20-May-2026 16:19:56	Failed to execute git operations on any configured Bitbucket instances. Proceeding with final failing...
error	20-May-2026 16:19:56	Error occurred while running Task '(1)' of type com.atlassian.bamboo.plugins.vcs:task.vcs.checkout.
error	20-May-2026 16:19:56	java.lang.RuntimeException: com.atlassian.bamboo.plugins.stash.repository.StashRepositoryException: Could not connect to Bitbucket
error	20-May-2026 16:19:56		at com.atlassian.bamboo.executor.RetryingTaskExecutor.rerun(RetryingTaskExecutor.java:142)
error	20-May-2026 16:19:56		at com.atlassian.bamboo.executor.RetryingTaskExecutor.runTask(RetryingTaskExecutor.java:99)
error	20-May-2026 16:19:56		at com.atlassian.bamboo.executor.RetryingTaskExecutor.retry(RetryingTaskExecutor.java:208)
error	20-May-2026 16:19:56		at com.atlassian.bamboo.executor.RetryingTaskExecutor.retry(RetryingTaskExecutor.java:189)
error	20-May-2026 16:19:56		at com.atlassian.bamboo.plugins.vcs.task.VcsCheckoutTask.execute(VcsCheckoutTask.java:130)
error	20-May-2026 16:19:56		at com.atlassian.bamboo.task.TaskExecutorImpl.lambda$executeTasks$3(TaskExecutorImpl.java:323)
error	20-May-2026 16:19:56		at com.atlassian.bamboo.task.TaskExecutorImpl.executeTaskWithPrePostActions(TaskExecutorImpl.java:258)
error	20-May-2026 16:19:56		at com.atlassian.bamboo.task.TaskExecutorImpl.executeTasks(TaskExecutorImpl.java:323)
error	20-May-2026 16:19:56		at com.atlassian.bamboo.task.TaskExecutorImpl.executePreparationTasks(TaskExecutorImpl.java:97)
error	20-May-2026 16:19:56		at com.atlassian.bamboo.build.pipeline.tasks.PrepareBuildTask.call(PrepareBuildTask.java:81)
error	20-May-2026 16:19:56		at com.atlassian.bamboo.v2.build.agent.DefaultBuildAgent.executeBuildPhase(DefaultBuildAgent.java:242)
error	20-May-2026 16:19:56		at com.atlassian.bamboo.v2.build.agent.DefaultBuildAgent.build(DefaultBuildAgent.java:214)
error	20-May-2026 16:19:56		at com.atlassian.bamboo.v2.build.agent.BuildAgentControllerImpl.lambda$waitAndPerformBuild$0(BuildAgentControllerImpl.java:183)
error	20-May-2026 16:19:56		at com.atlassian.bamboo.variable.CustomVariableContextImpl.withVariableSubstitutor(CustomVariableContextImpl.java:115)
error	20-May-2026 16:19:56		at com.atlassian.bamboo.v2.build.agent.BuildAgentControllerImpl.waitAndPerformBuild(BuildAgentControllerImpl.java:176)
error	20-May-2026 16:19:56		at com.atlassian.bamboo.v2.build.agent.DefaultBuildAgent.lambda$start$0(DefaultBuildAgent.java:159)
error	20-May-2026 16:19:56		at com.atlassian.bamboo.security.ImpersonationHelper.runWith(ImpersonationHelper.java:26)
error	20-May-2026 16:19:56		at com.atlassian.bamboo.security.ImpersonationHelper.runWithSystemAuthority(ImpersonationHelper.java:17)
error	20-May-2026 16:19:56		at com.atlassian.bamboo.security.ImpersonationHelper.lambda$makeRunnableWithSystemAuthority$0(ImpersonationHelper.java:38)
error	20-May-2026 16:19:56		at java.base/java.lang.Thread.run(Thread.java:840)
error	20-May-2026 16:19:56	Caused by: com.atlassian.bamboo.plugins.stash.repository.StashRepositoryException: Could not connect to Bitbucket
error	20-May-2026 16:19:56		at com.atlassian.bamboo.plugins.stash.v2.BitbucketServerWorkingCopyManager.lambda$retrieveSourceCode$4(BitbucketServerWorkingCopyManager.java:109)
error	20-May-2026 16:19:56		at com.atlassian.bamboo.plugins.stash.v2.AbstractBitbucketServerExecutor.executeOnMirrorWithPrimaryFallback(AbstractBitbucketServerExecutor.java:61)
error	20-May-2026 16:19:56		at com.atlassian.bamboo.plugins.stash.v2.BitbucketServerWorkingCopyManager.retrieveSourceCode(BitbucketServerWorkingCopyManager.java:103)
error	20-May-2026 16:19:56		at com.atlassian.bamboo.plugins.vcs.task.VcsCheckoutTask.fillWorkingDirFromVcs(VcsCheckoutTask.java:214)
error	20-May-2026 16:19:56		at com.atlassian.bamboo.plugins.vcs.task.VcsCheckoutTask.lambda$execute$0(VcsCheckoutTask.java:131)
error	20-May-2026 16:19:56		at com.atlassian.bamboo.executor.RetryingTaskExecutor.rerun(RetryingTaskExecutor.java:112)
error	20-May-2026 16:19:56		... 19 more
error	20-May-2026 16:19:56	Caused by: com.atlassian.bamboo.plugins.git.GitCommandException: command [/usr/bin/git remote set-url origin file:///opt/ci_workspace/casa/bamboo/agent5/xml-data/build-dir/_git-repositories-cache/0f87d47f932221ddde4439d2df095beaaa849915] failed with code 128. Working directory was [/opt/ci_workspace/casa/bamboo/agent5/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674]., stderr:
error	20-May-2026 16:19:56	fatal: not a git repository (or any parent up to mount point /opt)
error	20-May-2026 16:19:56	Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
error	20-May-2026 16:19:56		at com.atlassian.bamboo.plugins.git.GitCommandProcessor.runCommand(GitCommandProcessor.java:792)
error	20-May-2026 16:19:56		at com.atlassian.bamboo.plugins.git.GitCommandProcessor.runCommand(GitCommandProcessor.java:721)
error	20-May-2026 16:19:56		at com.atlassian.bamboo.plugins.git.GitCommandProcessor.runCommand(GitCommandProcessor.java:712)
error	20-May-2026 16:19:56		at com.atlassian.bamboo.plugins.git.GitCommandProcessor.setOrigin(GitCommandProcessor.java:606)
error	20-May-2026 16:19:56		at com.atlassian.bamboo.plugins.git.GitCommandProcessor.setOriginToLocalDirectory(GitCommandProcessor.java:663)
error	20-May-2026 16:19:56		at com.atlassian.bamboo.plugins.git.NativeGitOperationHelper.checkout(NativeGitOperationHelper.java:509)
error	20-May-2026 16:19:56		at com.atlassian.bamboo.plugins.git.v2.GitWorkingCopyManager.lambda$checkout$1(GitWorkingCopyManager.java:262)
error	20-May-2026 16:19:56		at io.atlassian.util.concurrent.ManagedLocks$ManagedLockImpl.withLock(ManagedLocks.java:293)
error	20-May-2026 16:19:56		at com.atlassian.bamboo.plugins.git.GitCacheDirectory$LoggingManagedLock.withLock(GitCacheDirectory.java:48)
error	20-May-2026 16:19:56		at com.atlassian.bamboo.plugins.git.v2.GitWorkingCopyManager.checkout(GitWorkingCopyManager.java:250)
error	20-May-2026 16:19:56		at com.atlassian.bamboo.plugins.git.v2.GitWorkingCopyManager.checkout(GitWorkingCopyManager.java:202)
error	20-May-2026 16:19:56		at com.atlassian.bamboo.plugins.git.v2.GitWorkingCopyManager.retrieveSourceCode(GitWorkingCopyManager.java:122)
error	20-May-2026 16:19:56		at com.atlassian.bamboo.plugins.stash.v2.BitbucketServerWorkingCopyManager.lambda$retrieveSourceCode$4(BitbucketServerWorkingCopyManager.java:105)
error	20-May-2026 16:19:56		... 24 more
error	20-May-2026 16:19:56	Failed to prepare the build 'PIPESPECS - Pipeline Pull Request Test - PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal - Pipeline PR Test 6.7.4 #2 (PIPESPECS-PPRT589-PPRT674-2)'
command	20-May-2026 16:19:56	Substituting variable: ${bamboo.agentId} with 153550853
command	20-May-2026 16:19:56	Substituting variable: ${bamboo.agentId} with 153550853
command	20-May-2026 16:19:56	Substituting variable: ${bamboo.agentId} with 153550853
simple	20-May-2026 16:19:56	Starting task 'Cleanup' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script'
command	20-May-2026 16:19:56	Beginning to execute external process for build 'PIPESPECS - Pipeline Pull Request Test - PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal - Pipeline PR Test 6.7.4 #2 (PIPESPECS-PPRT589-PPRT674-2)'\n ... running command line: \n/opt/ci_workspace/casa/bamboo/agent5/temp/PIPESPECS-PPRT589-PPRT674-2-ScriptBuildTask-17269273600643149500.sh\n ... in: /opt/ci_workspace/casa/bamboo/agent5/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674\n
build	20-May-2026 16:19:56	Starting cleanup
build	20-May-2026 16:19:56	Removed pipelinetest-153550853
simple	20-May-2026 16:19:56	Finished task 'Cleanup' with result: Success
simple	20-May-2026 16:19:56	Running on server: post build plugin 'Build Hanging Detection Configuration'
simple	20-May-2026 16:19:56	Running on server: post build plugin 'NCover Results Collector'
simple	20-May-2026 16:19:56	Running on server: post build plugin 'Build Labeller'
simple	20-May-2026 16:19:56	Running on server: post build plugin 'Clover Delta Calculator'
simple	20-May-2026 16:19:56	Running on server: post build plugin 'Maven Dependencies Postprocessor'
simple	20-May-2026 16:19:56	All post build plugins have finished
simple	20-May-2026 16:19:56	Generating build results summary...
simple	20-May-2026 16:19:56	Saving build results to disk...
simple	20-May-2026 16:19:56	Store variable context...
simple	20-May-2026 16:19:57	Finished building PIPESPECS-PPRT589-PPRT674-2.