simple 20-May-2026 16:19:44 Build PIPESPECS - Pipeline Pull Request Test - PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal - Pipeline PR Test 6.7.4 #1 (PIPESPECS-PPRT589-PPRT674-1) is being prepared for building on agent casaci-4.cv.nrao.edu, bamboo version: 9.6.17 simple 20-May-2026 16:19:44 Remote agent on host casaci-4.cv.nrao.edu simple 20-May-2026 16:19:44 Build working directory is /opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674 simple 20-May-2026 16:19:44 Executing build PIPESPECS - Pipeline Pull Request Test - PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal - Pipeline PR Test 6.7.4 #1 (PIPESPECS-PPRT589-PPRT674-1) simple 20-May-2026 16:19:44 Starting task 'Source Code Checkout' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' simple 20-May-2026 16:19:44 Build always requires a clean checkout simple 20-May-2026 16:19:44 Cleaning build directory '/opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674' simple 20-May-2026 16:19:44 Checking out into /opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674 simple 20-May-2026 16:19:44 Updating source code to revision: 9aa8f21df25a7564190c77409285e2ee6c8b9efa simple 20-May-2026 16:19:44 /usr/bin/git version simple 20-May-2026 16:19:44 /usr/bin/git log -1 --encoding=UTF-8 --format=%H HEAD simple 20-May-2026 16:19:44 /usr/bin/git ls-remote ssh://0c8f5f11-393f-4849-ba21-3cdffee47bd8@127.0.0.1:43903/pipe/pipeline.git simple 20-May-2026 16:19:45 Fetching 'refs/heads/PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal' from 'ssh://git@open-bitbucket.nrao.edu:7999/pipe/pipeline.git'. simple 20-May-2026 16:19:45 /usr/bin/git fetch -f -p ssh://0c8f5f11-393f-4849-ba21-3cdffee47bd8@127.0.0.1:43903/pipe/pipeline.git +refs/heads/PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal:refs/heads/PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal --update-head-ok --progress --verbose simple 20-May-2026 16:19:45 Warning: Permanently added '[127.0.0.1]:43903' (RSA) to the list of known hosts. simple 20-May-2026 16:19:45 X11 forwarding request failed on channel 0 simple 20-May-2026 16:19:45 remote: Enumerating objects: 9, done. simple 20-May-2026 16:19:45 remote: Counting objects: 11% (1/9) simple 20-May-2026 16:19:45 remote: Counting objects: 22% (2/9) simple 20-May-2026 16:19:45 remote: Counting objects: 33% (3/9) simple 20-May-2026 16:19:45 remote: Counting objects: 44% (4/9) simple 20-May-2026 16:19:45 remote: Counting objects: 55% (5/9) simple 20-May-2026 16:19:45 remote: Counting objects: 66% (6/9) simple 20-May-2026 16:19:45 remote: Counting objects: 77% (7/9) simple 20-May-2026 16:19:45 remote: Counting objects: 88% (8/9) simple 20-May-2026 16:19:45 remote: Counting objects: 100% (9/9) simple 20-May-2026 16:19:45 remote: Counting objects: 100% (9/9), done. simple 20-May-2026 16:19:45 remote: Compressing objects: 20% (1/5) simple 20-May-2026 16:19:45 remote: Compressing objects: 40% (2/5) simple 20-May-2026 16:19:45 remote: Compressing objects: 60% (3/5) simple 20-May-2026 16:19:45 remote: Compressing objects: 80% (4/5) simple 20-May-2026 16:19:45 remote: Compressing objects: 100% (5/5) simple 20-May-2026 16:19:45 remote: Compressing objects: 100% (5/5), done. simple 20-May-2026 16:19:45 remote: Total 5 (delta 4), reused 0 (delta 0), pack-reused 0 simple 20-May-2026 16:19:45 From ssh://127.0.0.1:43903/pipe/pipeline simple 20-May-2026 16:19:45 * [new branch] PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal -> PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal simple 20-May-2026 16:19:45 /usr/bin/git log -1 --encoding=UTF-8 --format=%H 9aa8f21df25a7564190c77409285e2ee6c8b9efa simple 20-May-2026 16:19:45 Checking out revision 9aa8f21df25a7564190c77409285e2ee6c8b9efa. simple 20-May-2026 16:19:45 Creating local git repository in '/opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674/.git'. simple 20-May-2026 16:19:45 /usr/bin/git clone /opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/_git-repositories-cache/0f87d47f932221ddde4439d2df095beaaa849915 --shared --no-checkout '-c filter.lfs.smudge=' '-c filter.lfs.required=false' /opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674 simple 20-May-2026 16:19:45 Cloning into '/opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674'... simple 20-May-2026 16:19:45 error: invalid key: filter.lfs.smudge simple 20-May-2026 16:19:45 fatal: unable to write parameters to config file error 20-May-2026 16:19:45 Checkout to revision 9aa8f21df25a7564190c77409285e2ee6c8b9efa has failed. simple 20-May-2026 16:19:45 /usr/bin/git remote set-url origin file:///opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/_git-repositories-cache/0f87d47f932221ddde4439d2df095beaaa849915 simple 20-May-2026 16:19:45 fatal: not a git repository (or any parent up to mount point /opt) simple 20-May-2026 16:19:45 Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). simple 20-May-2026 16:19:45 /usr/bin/git log -1 --encoding=UTF-8 --format=%H HEAD simple 20-May-2026 16:19:45 Warning: failed to checkout source code to directory '/opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674', trying to recover... simple 20-May-2026 16:19:45 Cleaned source directory '/opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674'... simple 20-May-2026 16:19:45 Checking out revision 9aa8f21df25a7564190c77409285e2ee6c8b9efa. simple 20-May-2026 16:19:45 Creating local git repository in '/opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674/.git'. simple 20-May-2026 16:19:45 /usr/bin/git clone /opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/_git-repositories-cache/0f87d47f932221ddde4439d2df095beaaa849915 --shared --no-checkout '-c filter.lfs.smudge=' '-c filter.lfs.required=false' /opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674 simple 20-May-2026 16:19:45 Cloning into '/opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674'... simple 20-May-2026 16:19:45 error: invalid key: filter.lfs.smudge simple 20-May-2026 16:19:45 fatal: unable to write parameters to config file error 20-May-2026 16:19:45 Checkout to revision 9aa8f21df25a7564190c77409285e2ee6c8b9efa has failed. simple 20-May-2026 16:19:45 /usr/bin/git remote set-url origin file:///opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/_git-repositories-cache/0f87d47f932221ddde4439d2df095beaaa849915 simple 20-May-2026 16:19:45 fatal: not a git repository (or any parent up to mount point /opt) simple 20-May-2026 16:19:45 Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). simple 20-May-2026 16:19:45 Failed to execute git operations on any configured Bitbucket instances. Proceeding with final failing... simple 20-May-2026 16:19:45 Updating source code to revision: 9aa8f21df25a7564190c77409285e2ee6c8b9efa simple 20-May-2026 16:19:45 /usr/bin/git log -1 --encoding=UTF-8 --format=%H HEAD simple 20-May-2026 16:19:45 Fetching 'refs/heads/PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal' from 'ssh://git@open-bitbucket.nrao.edu:7999/pipe/pipeline.git'. simple 20-May-2026 16:19:45 /usr/bin/git fetch -f -p ssh://0390fb2d-ae1f-4cc5-a920-bc60b17ad72b@127.0.0.1:43903/pipe/pipeline.git +refs/heads/PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal:refs/heads/PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal --update-head-ok --progress --verbose simple 20-May-2026 16:19:45 Warning: Permanently added '[127.0.0.1]:43903' (RSA) to the list of known hosts. simple 20-May-2026 16:19:45 X11 forwarding request failed on channel 0 simple 20-May-2026 16:19:45 From ssh://127.0.0.1:43903/pipe/pipeline simple 20-May-2026 16:19:45 = [up to date] PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal -> PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal simple 20-May-2026 16:19:45 /usr/bin/git log -1 --encoding=UTF-8 --format=%H 9aa8f21df25a7564190c77409285e2ee6c8b9efa simple 20-May-2026 16:19:45 Checking out revision 9aa8f21df25a7564190c77409285e2ee6c8b9efa. simple 20-May-2026 16:19:45 Creating local git repository in '/opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674/.git'. simple 20-May-2026 16:19:45 /usr/bin/git clone /opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/_git-repositories-cache/0f87d47f932221ddde4439d2df095beaaa849915 --shared --no-checkout '-c filter.lfs.smudge=' '-c filter.lfs.required=false' /opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674 simple 20-May-2026 16:19:45 Cloning into '/opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674'... simple 20-May-2026 16:19:45 error: invalid key: filter.lfs.smudge simple 20-May-2026 16:19:45 fatal: unable to write parameters to config file error 20-May-2026 16:19:45 Checkout to revision 9aa8f21df25a7564190c77409285e2ee6c8b9efa has failed. simple 20-May-2026 16:19:45 /usr/bin/git remote set-url origin file:///opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/_git-repositories-cache/0f87d47f932221ddde4439d2df095beaaa849915 simple 20-May-2026 16:19:45 fatal: not a git repository (or any parent up to mount point /opt) simple 20-May-2026 16:19:45 Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). simple 20-May-2026 16:19:45 /usr/bin/git log -1 --encoding=UTF-8 --format=%H HEAD simple 20-May-2026 16:19:45 Warning: failed to checkout source code to directory '/opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674', trying to recover... simple 20-May-2026 16:19:45 Cleaned source directory '/opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674'... simple 20-May-2026 16:19:45 Checking out revision 9aa8f21df25a7564190c77409285e2ee6c8b9efa. simple 20-May-2026 16:19:45 Creating local git repository in '/opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674/.git'. simple 20-May-2026 16:19:45 /usr/bin/git clone /opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/_git-repositories-cache/0f87d47f932221ddde4439d2df095beaaa849915 --shared --no-checkout '-c filter.lfs.smudge=' '-c filter.lfs.required=false' /opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674 simple 20-May-2026 16:19:45 Cloning into '/opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674'... simple 20-May-2026 16:19:45 error: invalid key: filter.lfs.smudge simple 20-May-2026 16:19:45 fatal: unable to write parameters to config file error 20-May-2026 16:19:45 Checkout to revision 9aa8f21df25a7564190c77409285e2ee6c8b9efa has failed. simple 20-May-2026 16:19:45 /usr/bin/git remote set-url origin file:///opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/_git-repositories-cache/0f87d47f932221ddde4439d2df095beaaa849915 simple 20-May-2026 16:19:45 fatal: not a git repository (or any parent up to mount point /opt) simple 20-May-2026 16:19:45 Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). simple 20-May-2026 16:19:45 Failed to execute git operations on any configured Bitbucket instances. Proceeding with final failing... simple 20-May-2026 16:19:46 Updating source code to revision: 9aa8f21df25a7564190c77409285e2ee6c8b9efa simple 20-May-2026 16:19:46 /usr/bin/git log -1 --encoding=UTF-8 --format=%H HEAD simple 20-May-2026 16:19:46 Fetching 'refs/heads/PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal' from 'ssh://git@open-bitbucket.nrao.edu:7999/pipe/pipeline.git'. simple 20-May-2026 16:19:46 /usr/bin/git fetch -f -p ssh://8606c575-2255-418d-9693-42e220eb05d2@127.0.0.1:43903/pipe/pipeline.git +refs/heads/PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal:refs/heads/PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal --update-head-ok --progress --verbose simple 20-May-2026 16:19:46 Warning: Permanently added '[127.0.0.1]:43903' (RSA) to the list of known hosts. simple 20-May-2026 16:19:46 X11 forwarding request failed on channel 0 simple 20-May-2026 16:19:46 From ssh://127.0.0.1:43903/pipe/pipeline simple 20-May-2026 16:19:46 = [up to date] PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal -> PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal simple 20-May-2026 16:19:46 /usr/bin/git log -1 --encoding=UTF-8 --format=%H 9aa8f21df25a7564190c77409285e2ee6c8b9efa simple 20-May-2026 16:19:46 Checking out revision 9aa8f21df25a7564190c77409285e2ee6c8b9efa. simple 20-May-2026 16:19:46 Creating local git repository in '/opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674/.git'. simple 20-May-2026 16:19:46 /usr/bin/git clone /opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/_git-repositories-cache/0f87d47f932221ddde4439d2df095beaaa849915 --shared --no-checkout '-c filter.lfs.smudge=' '-c filter.lfs.required=false' /opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674 simple 20-May-2026 16:19:46 Cloning into '/opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674'... simple 20-May-2026 16:19:46 error: invalid key: filter.lfs.smudge simple 20-May-2026 16:19:46 fatal: unable to write parameters to config file error 20-May-2026 16:19:46 Checkout to revision 9aa8f21df25a7564190c77409285e2ee6c8b9efa has failed. simple 20-May-2026 16:19:46 /usr/bin/git remote set-url origin file:///opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/_git-repositories-cache/0f87d47f932221ddde4439d2df095beaaa849915 simple 20-May-2026 16:19:46 fatal: not a git repository (or any parent up to mount point /opt) simple 20-May-2026 16:19:46 Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). simple 20-May-2026 16:19:46 /usr/bin/git log -1 --encoding=UTF-8 --format=%H HEAD simple 20-May-2026 16:19:46 Warning: failed to checkout source code to directory '/opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674', trying to recover... simple 20-May-2026 16:19:46 Cleaned source directory '/opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674'... simple 20-May-2026 16:19:46 Checking out revision 9aa8f21df25a7564190c77409285e2ee6c8b9efa. simple 20-May-2026 16:19:46 Creating local git repository in '/opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674/.git'. simple 20-May-2026 16:19:46 /usr/bin/git clone /opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/_git-repositories-cache/0f87d47f932221ddde4439d2df095beaaa849915 --shared --no-checkout '-c filter.lfs.smudge=' '-c filter.lfs.required=false' /opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674 simple 20-May-2026 16:19:46 Cloning into '/opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674'... simple 20-May-2026 16:19:46 error: invalid key: filter.lfs.smudge simple 20-May-2026 16:19:46 fatal: unable to write parameters to config file error 20-May-2026 16:19:46 Checkout to revision 9aa8f21df25a7564190c77409285e2ee6c8b9efa has failed. simple 20-May-2026 16:19:46 /usr/bin/git remote set-url origin file:///opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/_git-repositories-cache/0f87d47f932221ddde4439d2df095beaaa849915 simple 20-May-2026 16:19:46 fatal: not a git repository (or any parent up to mount point /opt) simple 20-May-2026 16:19:46 Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). simple 20-May-2026 16:19:46 Failed to execute git operations on any configured Bitbucket instances. Proceeding with final failing... error 20-May-2026 16:19:46 Error occurred while running Task '(1)' of type com.atlassian.bamboo.plugins.vcs:task.vcs.checkout. error 20-May-2026 16:19:46 java.lang.RuntimeException: com.atlassian.bamboo.plugins.stash.repository.StashRepositoryException: Could not connect to Bitbucket error 20-May-2026 16:19:46 at com.atlassian.bamboo.executor.RetryingTaskExecutor.rerun(RetryingTaskExecutor.java:142) error 20-May-2026 16:19:46 at com.atlassian.bamboo.executor.RetryingTaskExecutor.runTask(RetryingTaskExecutor.java:99) error 20-May-2026 16:19:46 at com.atlassian.bamboo.executor.RetryingTaskExecutor.retry(RetryingTaskExecutor.java:208) error 20-May-2026 16:19:46 at com.atlassian.bamboo.executor.RetryingTaskExecutor.retry(RetryingTaskExecutor.java:189) error 20-May-2026 16:19:46 at com.atlassian.bamboo.plugins.vcs.task.VcsCheckoutTask.execute(VcsCheckoutTask.java:130) error 20-May-2026 16:19:46 at com.atlassian.bamboo.task.TaskExecutorImpl.lambda$executeTasks$3(TaskExecutorImpl.java:323) error 20-May-2026 16:19:46 at com.atlassian.bamboo.task.TaskExecutorImpl.executeTaskWithPrePostActions(TaskExecutorImpl.java:258) error 20-May-2026 16:19:46 at com.atlassian.bamboo.task.TaskExecutorImpl.executeTasks(TaskExecutorImpl.java:323) error 20-May-2026 16:19:46 at com.atlassian.bamboo.task.TaskExecutorImpl.executePreparationTasks(TaskExecutorImpl.java:97) error 20-May-2026 16:19:46 at com.atlassian.bamboo.build.pipeline.tasks.PrepareBuildTask.call(PrepareBuildTask.java:81) error 20-May-2026 16:19:46 at com.atlassian.bamboo.v2.build.agent.DefaultBuildAgent.executeBuildPhase(DefaultBuildAgent.java:242) error 20-May-2026 16:19:46 at com.atlassian.bamboo.v2.build.agent.DefaultBuildAgent.build(DefaultBuildAgent.java:214) error 20-May-2026 16:19:46 at com.atlassian.bamboo.v2.build.agent.BuildAgentControllerImpl.lambda$waitAndPerformBuild$0(BuildAgentControllerImpl.java:183) error 20-May-2026 16:19:46 at com.atlassian.bamboo.variable.CustomVariableContextImpl.withVariableSubstitutor(CustomVariableContextImpl.java:115) error 20-May-2026 16:19:46 at com.atlassian.bamboo.v2.build.agent.BuildAgentControllerImpl.waitAndPerformBuild(BuildAgentControllerImpl.java:176) error 20-May-2026 16:19:46 at com.atlassian.bamboo.v2.build.agent.DefaultBuildAgent.lambda$start$0(DefaultBuildAgent.java:159) error 20-May-2026 16:19:46 at com.atlassian.bamboo.security.ImpersonationHelper.runWith(ImpersonationHelper.java:26) error 20-May-2026 16:19:46 at com.atlassian.bamboo.security.ImpersonationHelper.runWithSystemAuthority(ImpersonationHelper.java:17) error 20-May-2026 16:19:46 at com.atlassian.bamboo.security.ImpersonationHelper.lambda$makeRunnableWithSystemAuthority$0(ImpersonationHelper.java:38) error 20-May-2026 16:19:46 at java.base/java.lang.Thread.run(Thread.java:840) error 20-May-2026 16:19:46 Caused by: com.atlassian.bamboo.plugins.stash.repository.StashRepositoryException: Could not connect to Bitbucket error 20-May-2026 16:19:46 at com.atlassian.bamboo.plugins.stash.v2.BitbucketServerWorkingCopyManager.lambda$retrieveSourceCode$4(BitbucketServerWorkingCopyManager.java:109) error 20-May-2026 16:19:46 at com.atlassian.bamboo.plugins.stash.v2.AbstractBitbucketServerExecutor.executeOnMirrorWithPrimaryFallback(AbstractBitbucketServerExecutor.java:61) error 20-May-2026 16:19:46 at com.atlassian.bamboo.plugins.stash.v2.BitbucketServerWorkingCopyManager.retrieveSourceCode(BitbucketServerWorkingCopyManager.java:103) error 20-May-2026 16:19:46 at com.atlassian.bamboo.plugins.vcs.task.VcsCheckoutTask.fillWorkingDirFromVcs(VcsCheckoutTask.java:214) error 20-May-2026 16:19:46 at com.atlassian.bamboo.plugins.vcs.task.VcsCheckoutTask.lambda$execute$0(VcsCheckoutTask.java:131) error 20-May-2026 16:19:46 at com.atlassian.bamboo.executor.RetryingTaskExecutor.rerun(RetryingTaskExecutor.java:112) error 20-May-2026 16:19:46 ... 19 more error 20-May-2026 16:19:46 Caused by: com.atlassian.bamboo.plugins.git.GitCommandException: command [/usr/bin/git remote set-url origin file:///opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/_git-repositories-cache/0f87d47f932221ddde4439d2df095beaaa849915] failed with code 128. Working directory was [/opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674]., stderr: error 20-May-2026 16:19:46 fatal: not a git repository (or any parent up to mount point /opt) error 20-May-2026 16:19:46 Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). error 20-May-2026 16:19:46 at com.atlassian.bamboo.plugins.git.GitCommandProcessor.runCommand(GitCommandProcessor.java:792) error 20-May-2026 16:19:46 at com.atlassian.bamboo.plugins.git.GitCommandProcessor.runCommand(GitCommandProcessor.java:721) error 20-May-2026 16:19:46 at com.atlassian.bamboo.plugins.git.GitCommandProcessor.runCommand(GitCommandProcessor.java:712) error 20-May-2026 16:19:46 at com.atlassian.bamboo.plugins.git.GitCommandProcessor.setOrigin(GitCommandProcessor.java:606) error 20-May-2026 16:19:46 at com.atlassian.bamboo.plugins.git.GitCommandProcessor.setOriginToLocalDirectory(GitCommandProcessor.java:663) error 20-May-2026 16:19:46 at com.atlassian.bamboo.plugins.git.NativeGitOperationHelper.checkout(NativeGitOperationHelper.java:509) error 20-May-2026 16:19:46 at com.atlassian.bamboo.plugins.git.v2.GitWorkingCopyManager.lambda$checkout$1(GitWorkingCopyManager.java:262) error 20-May-2026 16:19:46 at io.atlassian.util.concurrent.ManagedLocks$ManagedLockImpl.withLock(ManagedLocks.java:293) error 20-May-2026 16:19:46 at com.atlassian.bamboo.plugins.git.GitCacheDirectory$LoggingManagedLock.withLock(GitCacheDirectory.java:48) error 20-May-2026 16:19:46 at com.atlassian.bamboo.plugins.git.v2.GitWorkingCopyManager.checkout(GitWorkingCopyManager.java:250) error 20-May-2026 16:19:46 at com.atlassian.bamboo.plugins.git.v2.GitWorkingCopyManager.checkout(GitWorkingCopyManager.java:202) error 20-May-2026 16:19:46 at com.atlassian.bamboo.plugins.git.v2.GitWorkingCopyManager.retrieveSourceCode(GitWorkingCopyManager.java:122) error 20-May-2026 16:19:46 at com.atlassian.bamboo.plugins.stash.v2.BitbucketServerWorkingCopyManager.lambda$retrieveSourceCode$4(BitbucketServerWorkingCopyManager.java:105) error 20-May-2026 16:19:46 ... 24 more error 20-May-2026 16:19:46 Failed to prepare the build 'PIPESPECS - Pipeline Pull Request Test - PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal - Pipeline PR Test 6.7.4 #1 (PIPESPECS-PPRT589-PPRT674-1)' command 20-May-2026 16:19:46 Substituting variable: ${bamboo.agentId} with 159678466 command 20-May-2026 16:19:46 Substituting variable: ${bamboo.agentId} with 159678466 command 20-May-2026 16:19:46 Substituting variable: ${bamboo.agentId} with 159678466 simple 20-May-2026 16:19:46 Starting task 'Cleanup' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' command 20-May-2026 16:19:46 Beginning to execute external process for build 'PIPESPECS - Pipeline Pull Request Test - PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal - Pipeline PR Test 6.7.4 #1 (PIPESPECS-PPRT589-PPRT674-1)'\n ... running command line: \n/opt/ci_workspace/casa/bamboo/agent9/temp/PIPESPECS-PPRT589-PPRT674-1-ScriptBuildTask-7908146587247827225.sh\n ... in: /opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674\nbamboo_planRepository_1_branch=PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal\nbamboo_capability_buildmachinetype=dockertest\nbamboo_planRepository_1_branchDisplayName=PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal\nbamboo_resultsUrl=https://open-bamboo.nrao.edu/browse/PIPESPECS-PPRT589-PPRT674-1\nbamboo_build_working_directory=/opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674\nbamboo_planRepository_1_name=Pipeline\nbamboo_buildKey=PIPESPECS-PPRT589-PPRT674\nbamboo_shortPlanName=Pipeline Pull Request Test\nbamboo_capability_hostname=casaci-4\nbamboo_planRepository_name=Pipeline\nbamboo_buildNumber=1\nbamboo_simpleBuildTimeStamp=20260520161943\nbamboo_shortJobName=Pipeline PR Test 6.7.4\nbamboo_buildResultsUrl=https://open-bamboo.nrao.edu/browse/PIPESPECS-PPRT589-PPRT674-1\nbamboo_username=vsuorant@nrao.edu\nbamboo_planRepository_repositoryUrl=ssh://git@open-bitbucket.nrao.edu:7999/pipe/pipeline.git\nbamboo_ManualBuildTriggerReason_stageName=Default Stage\nbamboo_agentId=159678466\nbamboo_planName=PIPESPECS - Pipeline Pull Request Test - PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal\nbamboo_shortPlanKey=PPRT589\nbamboo_repository_pr_key=1828\nbamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_8=/opt/ci_workspace/casa/bamboo/agent5/temp/PIPESPECS-PPRT589-PPRT674-1-ScriptBuildTask-7514399755083000811.sh\nbamboo_al_password=********\nbamboo_shortJobKey=PPRT674\nbamboo_signature=3116870A355D5035B7A1486D75B5396BAFC8FADE\nbamboo_planRepository_revision=9aa8f21df25a7564190c77409285e2ee6c8b9efa\nbamboo_buildTimeStamp=2026-05-20T16:19:43.923-04:00\nbamboo_repository_pr_targetBranch=main\nbamboo_buildResultKey=PIPESPECS-PPRT589-PPRT674-1\nbamboo_buildPlanName=PIPESPECS - Pipeline Pull Request Test - PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal - Pipeline PR Test 6.7.4\nbamboo_planRepository_1_revision=9aa8f21df25a7564190c77409285e2ee6c8b9efa\nbamboo_repository_pr_sourceBranch=PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal\nbamboo_buildFailed=false\nbamboo_capability_system_docker_executable=/usr/bin/docker\nbamboo_planRepository_branch=PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal\nbamboo_agentWorkingDirectory=/opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir\nbamboo_capability_system_git_executable=/usr/bin/git\nbamboo_capability_system_jdk_JDK_17=/usr/lib/jvm/java-17-openjdk-17.0.19.0.10-2.el9.x86_64\nbamboo_capability_system_jdk_JDK_17_0_19__JRE_=/usr/lib/jvm/java-17-openjdk-17.0.19.0.10-2.el9.x86_64\nbamboo_planRepository_branchDisplayName=PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal\nbamboo_planRepository_1_type=bbserver\nbamboo_planRepository_branchName=PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal\nbamboo_shortPlanBranchName=PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal\nbamboo_capability_system_jdk_JDK=/usr/lib/jvm/java-17-openjdk-17.0.19.0.10-2.el9.x86_64\nbamboo_plan_storageTag=plan-158925507\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=bbserver\nbamboo_git_cache_directory=/opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/_git-repositories-cache\nbamboo_ManualBuildTriggerReason_userName=vsuorant\nbamboo_tmp_directory=/opt/ci_workspace/casa/bamboo/agent9/temp\nbamboo_working_directory=/opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT589-PPRT674\nbamboo_planKey=PIPESPECS-PPRT589\nbamboo_RerunBuildTriggerReason_noOfRetries=1\nbamboo_planRepository_1_repositoryUrl=ssh://git@open-bitbucket.nrao.edu:7999/pipe/pipeline.git\nbamboo_planRepository_username=\nbamboo_triggerReason_key=com.atlassian.bamboo.plugin.system.triggerReason:RerunBuildTriggerReason\nbamboo_planRepository_1_branchName=PIPE-3037-change-newly-flagged-qa-score-for-hif_applycal\n build 20-May-2026 16:19:46 Starting cleanup build 20-May-2026 16:19:46 Removed pipelinetest-159678466 simple 20-May-2026 16:19:46 Finished task 'Cleanup' with result: Success simple 20-May-2026 16:19:46 Running on server: post build plugin 'Build Hanging Detection Configuration' simple 20-May-2026 16:19:46 Running on server: post build plugin 'NCover Results Collector' simple 20-May-2026 16:19:46 Running on server: post build plugin 'Build Labeller' simple 20-May-2026 16:19:46 Running on server: post build plugin 'Clover Delta Calculator' simple 20-May-2026 16:19:46 Running on server: post build plugin 'Maven Dependencies Postprocessor' simple 20-May-2026 16:19:46 All post build plugins have finished simple 20-May-2026 16:19:46 Generating build results summary... simple 20-May-2026 16:19:46 Saving build results to disk... simple 20-May-2026 16:19:46 Store variable context... simple 20-May-2026 16:19:46 Finished building PIPESPECS-PPRT589-PPRT674-1.