simple	21-May-2026 01:40:17	Build PIPESPECS - Pipeline Pull Request Test - PIPE-2964-hsd_baseline-use-75-quantile-as-a-representative-line-width-of-the-detected-cluster - Pipeline PR Test 6.7.4 #4 (PIPESPECS-PPRT569-PPRT674-4) is being prepared for building on agent casaci-4.cv.nrao.edu, bamboo version: 9.6.17
simple	21-May-2026 01:40:17	Remote agent on host casaci-4.cv.nrao.edu
simple	21-May-2026 01:40:17	Build working directory is /opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT569-PPRT674
simple	21-May-2026 01:40:18	Executing build PIPESPECS - Pipeline Pull Request Test - PIPE-2964-hsd_baseline-use-75-quantile-as-a-representative-line-width-of-the-detected-cluster - Pipeline PR Test 6.7.4 #4 (PIPESPECS-PPRT569-PPRT674-4)
simple	21-May-2026 01:40:18	Starting task 'Source Code Checkout' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout'
simple	21-May-2026 01:40:18	Build always requires a clean checkout
simple	21-May-2026 01:40:18	Cleaning build directory '/opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT569-PPRT674'
simple	21-May-2026 01:40:18	Checking out into /opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT569-PPRT674
simple	21-May-2026 01:40:18	Updating source code to revision: c1912973d1e9f87d675ce4ce53d931f250e6f56e
simple	21-May-2026 01:40:18	Creating local git repository in '/opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/_git-repositories-cache/0f87d47f932221ddde4439d2df095beaaa849915/.git'.
simple	21-May-2026 01:40:18	hint: Using 'master' as the name for the initial branch. This default branch name
simple	21-May-2026 01:40:18	hint: will change to "main" in Git 3.0. To configure the initial branch name
simple	21-May-2026 01:40:18	hint: to use in all of your new repositories, which will suppress this warning,
simple	21-May-2026 01:40:18	hint: call:simple	21-May-2026 01:40:18	Initialized empty Git repository in /opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/_git-repositories-cache/0f87d47f932221ddde4439d2df095beaaa849915/.git/

simple	21-May-2026 01:40:18	hint:
simple	21-May-2026 01:40:18	hint: 	git config --global init.defaultBranch <name>
simple	21-May-2026 01:40:18	hint:
simple	21-May-2026 01:40:18	hint: Names commonly chosen instead of 'master' are 'main', 'trunk' and
simple	21-May-2026 01:40:18	hint: 'development'. The just-created branch can be renamed via this command:
simple	21-May-2026 01:40:18	hint:
simple	21-May-2026 01:40:18	hint: 	git branch -m <name>
simple	21-May-2026 01:40:18	hint:
simple	21-May-2026 01:40:18	hint: Disable this message with "git config set advice.defaultBranchName false"
simple	21-May-2026 01:40:18	Fetching 'refs/heads/PIPE-2964-hsd_baseline-use-75-quantile-as-a-representative-line-width-of-the-detected-cluster' from 'ssh://git@open-bitbucket.nrao.edu:7999/pipe/pipeline.git'.
simple	21-May-2026 01:40:18	Warning: Permanently added '[127.0.0.1]:43903' (RSA) to the list of known hosts.
simple	21-May-2026 01:40:18	X11 forwarding request failed on channel 0
simple	21-May-2026 01:40:20	Checking out revision c1912973d1e9f87d675ce4ce53d931f250e6f56e.
simple	21-May-2026 01:40:20	Creating local git repository in '/opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT569-PPRT674/.git'.
simple	21-May-2026 01:40:20	Cloning into '/opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT569-PPRT674'...
simple	21-May-2026 01:40:20	error: invalid key:  filter.lfs.smudge
simple	21-May-2026 01:40:20	fatal: unable to write parameters to config file
error	21-May-2026 01:40:20	Checkout to revision c1912973d1e9f87d675ce4ce53d931f250e6f56e has failed.
simple	21-May-2026 01:40:20	fatal: not a git repository (or any parent up to mount point /opt)
simple	21-May-2026 01:40:20	Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
simple	21-May-2026 01:40:20	Warning: failed to checkout source code to directory '/opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT569-PPRT674', trying to recover...
simple	21-May-2026 01:40:20	Cleaned source directory '/opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT569-PPRT674'...
simple	21-May-2026 01:40:20	Checking out revision c1912973d1e9f87d675ce4ce53d931f250e6f56e.
simple	21-May-2026 01:40:20	Creating local git repository in '/opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT569-PPRT674/.git'.
simple	21-May-2026 01:40:20	Cloning into '/opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT569-PPRT674'...
simple	21-May-2026 01:40:20	error: invalid key:  filter.lfs.smudge
simple	21-May-2026 01:40:20	fatal: unable to write parameters to config file
error	21-May-2026 01:40:20	Checkout to revision c1912973d1e9f87d675ce4ce53d931f250e6f56e has failed.
simple	21-May-2026 01:40:20	fatal: not a git repository (or any parent up to mount point /opt)
simple	21-May-2026 01:40:20	Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
simple	21-May-2026 01:40:20	Failed to execute git operations on any configured Bitbucket instances. Proceeding with final failing...
simple	21-May-2026 01:40:20	Updating source code to revision: c1912973d1e9f87d675ce4ce53d931f250e6f56e
simple	21-May-2026 01:40:20	Fetching 'refs/heads/PIPE-2964-hsd_baseline-use-75-quantile-as-a-representative-line-width-of-the-detected-cluster' from 'ssh://git@open-bitbucket.nrao.edu:7999/pipe/pipeline.git'.
simple	21-May-2026 01:40:20	Warning: Permanently added '[127.0.0.1]:43903' (RSA) to the list of known hosts.
simple	21-May-2026 01:40:21	X11 forwarding request failed on channel 0
simple	21-May-2026 01:40:21	Checking out revision c1912973d1e9f87d675ce4ce53d931f250e6f56e.
simple	21-May-2026 01:40:21	Creating local git repository in '/opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT569-PPRT674/.git'.
simple	21-May-2026 01:40:21	Cloning into '/opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT569-PPRT674'...
simple	21-May-2026 01:40:21	error: invalid key:  filter.lfs.smudge
simple	21-May-2026 01:40:21	fatal: unable to write parameters to config file
error	21-May-2026 01:40:21	Checkout to revision c1912973d1e9f87d675ce4ce53d931f250e6f56e has failed.
simple	21-May-2026 01:40:21	fatal: not a git repository (or any parent up to mount point /opt)
simple	21-May-2026 01:40:21	Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
simple	21-May-2026 01:40:21	Warning: failed to checkout source code to directory '/opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT569-PPRT674', trying to recover...
simple	21-May-2026 01:40:21	Cleaned source directory '/opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT569-PPRT674'...
simple	21-May-2026 01:40:21	Checking out revision c1912973d1e9f87d675ce4ce53d931f250e6f56e.
simple	21-May-2026 01:40:21	Creating local git repository in '/opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT569-PPRT674/.git'.
simple	21-May-2026 01:40:21	Cloning into '/opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT569-PPRT674'...
simple	21-May-2026 01:40:21	error: invalid key:  filter.lfs.smudge
simple	21-May-2026 01:40:21	fatal: unable to write parameters to config file
error	21-May-2026 01:40:21	Checkout to revision c1912973d1e9f87d675ce4ce53d931f250e6f56e has failed.
simple	21-May-2026 01:40:21	fatal: not a git repository (or any parent up to mount point /opt)
simple	21-May-2026 01:40:21	Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
simple	21-May-2026 01:40:21	Failed to execute git operations on any configured Bitbucket instances. Proceeding with final failing...
simple	21-May-2026 01:40:21	Updating source code to revision: c1912973d1e9f87d675ce4ce53d931f250e6f56e
simple	21-May-2026 01:40:21	Fetching 'refs/heads/PIPE-2964-hsd_baseline-use-75-quantile-as-a-representative-line-width-of-the-detected-cluster' from 'ssh://git@open-bitbucket.nrao.edu:7999/pipe/pipeline.git'.
simple	21-May-2026 01:40:21	Warning: Permanently added '[127.0.0.1]:43903' (RSA) to the list of known hosts.
simple	21-May-2026 01:40:21	X11 forwarding request failed on channel 0
simple	21-May-2026 01:40:22	Checking out revision c1912973d1e9f87d675ce4ce53d931f250e6f56e.
simple	21-May-2026 01:40:22	Creating local git repository in '/opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT569-PPRT674/.git'.
simple	21-May-2026 01:40:22	Cloning into '/opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT569-PPRT674'...
simple	21-May-2026 01:40:22	error: invalid key:  filter.lfs.smudge
simple	21-May-2026 01:40:22	fatal: unable to write parameters to config file
error	21-May-2026 01:40:22	Checkout to revision c1912973d1e9f87d675ce4ce53d931f250e6f56e has failed.
simple	21-May-2026 01:40:22	fatal: not a git repository (or any parent up to mount point /opt)
simple	21-May-2026 01:40:22	Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
simple	21-May-2026 01:40:22	Warning: failed to checkout source code to directory '/opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT569-PPRT674', trying to recover...
simple	21-May-2026 01:40:22	Cleaned source directory '/opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT569-PPRT674'...
simple	21-May-2026 01:40:22	Checking out revision c1912973d1e9f87d675ce4ce53d931f250e6f56e.
simple	21-May-2026 01:40:22	Creating local git repository in '/opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT569-PPRT674/.git'.
simple	21-May-2026 01:40:22	Cloning into '/opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT569-PPRT674'...
simple	21-May-2026 01:40:22	error: invalid key:  filter.lfs.smudge
simple	21-May-2026 01:40:22	fatal: unable to write parameters to config file
error	21-May-2026 01:40:22	Checkout to revision c1912973d1e9f87d675ce4ce53d931f250e6f56e has failed.
simple	21-May-2026 01:40:22	fatal: not a git repository (or any parent up to mount point /opt)
simple	21-May-2026 01:40:22	Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
simple	21-May-2026 01:40:22	Failed to execute git operations on any configured Bitbucket instances. Proceeding with final failing...
error	21-May-2026 01:40:22	Error occurred while running Task '(1)' of type com.atlassian.bamboo.plugins.vcs:task.vcs.checkout.
error	21-May-2026 01:40:22	java.lang.RuntimeException: com.atlassian.bamboo.plugins.stash.repository.StashRepositoryException: Could not connect to Bitbucket
error	21-May-2026 01:40:22		at com.atlassian.bamboo.executor.RetryingTaskExecutor.rerun(RetryingTaskExecutor.java:142)
error	21-May-2026 01:40:22		at com.atlassian.bamboo.executor.RetryingTaskExecutor.runTask(RetryingTaskExecutor.java:99)
error	21-May-2026 01:40:22		at com.atlassian.bamboo.executor.RetryingTaskExecutor.retry(RetryingTaskExecutor.java:208)
error	21-May-2026 01:40:22		at com.atlassian.bamboo.executor.RetryingTaskExecutor.retry(RetryingTaskExecutor.java:189)
error	21-May-2026 01:40:22		at com.atlassian.bamboo.plugins.vcs.task.VcsCheckoutTask.execute(VcsCheckoutTask.java:130)
error	21-May-2026 01:40:22		at com.atlassian.bamboo.task.TaskExecutorImpl.lambda$executeTasks$3(TaskExecutorImpl.java:323)
error	21-May-2026 01:40:22		at com.atlassian.bamboo.task.TaskExecutorImpl.executeTaskWithPrePostActions(TaskExecutorImpl.java:258)
error	21-May-2026 01:40:22		at com.atlassian.bamboo.task.TaskExecutorImpl.executeTasks(TaskExecutorImpl.java:323)
error	21-May-2026 01:40:22		at com.atlassian.bamboo.task.TaskExecutorImpl.executePreparationTasks(TaskExecutorImpl.java:97)
error	21-May-2026 01:40:22		at com.atlassian.bamboo.build.pipeline.tasks.PrepareBuildTask.call(PrepareBuildTask.java:81)
error	21-May-2026 01:40:22		at com.atlassian.bamboo.v2.build.agent.DefaultBuildAgent.executeBuildPhase(DefaultBuildAgent.java:242)
error	21-May-2026 01:40:22		at com.atlassian.bamboo.v2.build.agent.DefaultBuildAgent.build(DefaultBuildAgent.java:214)
error	21-May-2026 01:40:22		at com.atlassian.bamboo.v2.build.agent.BuildAgentControllerImpl.lambda$waitAndPerformBuild$0(BuildAgentControllerImpl.java:183)
error	21-May-2026 01:40:22		at com.atlassian.bamboo.variable.CustomVariableContextImpl.withVariableSubstitutor(CustomVariableContextImpl.java:115)
error	21-May-2026 01:40:22		at com.atlassian.bamboo.v2.build.agent.BuildAgentControllerImpl.waitAndPerformBuild(BuildAgentControllerImpl.java:176)
error	21-May-2026 01:40:22		at com.atlassian.bamboo.v2.build.agent.DefaultBuildAgent.lambda$start$0(DefaultBuildAgent.java:159)
error	21-May-2026 01:40:22		at com.atlassian.bamboo.security.ImpersonationHelper.runWith(ImpersonationHelper.java:26)
error	21-May-2026 01:40:22		at com.atlassian.bamboo.security.ImpersonationHelper.runWithSystemAuthority(ImpersonationHelper.java:17)
error	21-May-2026 01:40:22		at com.atlassian.bamboo.security.ImpersonationHelper.lambda$makeRunnableWithSystemAuthority$0(ImpersonationHelper.java:38)
error	21-May-2026 01:40:22		at java.base/java.lang.Thread.run(Thread.java:840)
error	21-May-2026 01:40:22	Caused by: com.atlassian.bamboo.plugins.stash.repository.StashRepositoryException: Could not connect to Bitbucket
error	21-May-2026 01:40:22		at com.atlassian.bamboo.plugins.stash.v2.BitbucketServerWorkingCopyManager.lambda$retrieveSourceCode$4(BitbucketServerWorkingCopyManager.java:109)
error	21-May-2026 01:40:22		at com.atlassian.bamboo.plugins.stash.v2.AbstractBitbucketServerExecutor.executeOnMirrorWithPrimaryFallback(AbstractBitbucketServerExecutor.java:61)
error	21-May-2026 01:40:22		at com.atlassian.bamboo.plugins.stash.v2.BitbucketServerWorkingCopyManager.retrieveSourceCode(BitbucketServerWorkingCopyManager.java:103)
error	21-May-2026 01:40:22		at com.atlassian.bamboo.plugins.vcs.task.VcsCheckoutTask.fillWorkingDirFromVcs(VcsCheckoutTask.java:214)
error	21-May-2026 01:40:22		at com.atlassian.bamboo.plugins.vcs.task.VcsCheckoutTask.lambda$execute$0(VcsCheckoutTask.java:131)
error	21-May-2026 01:40:22		at com.atlassian.bamboo.executor.RetryingTaskExecutor.rerun(RetryingTaskExecutor.java:112)
error	21-May-2026 01:40:22		... 19 more
error	21-May-2026 01:40:22	Caused by: com.atlassian.bamboo.plugins.git.GitCommandException: command [/usr/bin/git remote set-url origin file:///opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/_git-repositories-cache/0f87d47f932221ddde4439d2df095beaaa849915] failed with code 128. Working directory was [/opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT569-PPRT674]., stderr:
error	21-May-2026 01:40:22	fatal: not a git repository (or any parent up to mount point /opt)
error	21-May-2026 01:40:22	Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
error	21-May-2026 01:40:22		at com.atlassian.bamboo.plugins.git.GitCommandProcessor.runCommand(GitCommandProcessor.java:792)
error	21-May-2026 01:40:22		at com.atlassian.bamboo.plugins.git.GitCommandProcessor.runCommand(GitCommandProcessor.java:721)
error	21-May-2026 01:40:22		at com.atlassian.bamboo.plugins.git.GitCommandProcessor.runCommand(GitCommandProcessor.java:712)
error	21-May-2026 01:40:22		at com.atlassian.bamboo.plugins.git.GitCommandProcessor.setOrigin(GitCommandProcessor.java:606)
error	21-May-2026 01:40:22		at com.atlassian.bamboo.plugins.git.GitCommandProcessor.setOriginToLocalDirectory(GitCommandProcessor.java:663)
error	21-May-2026 01:40:22		at com.atlassian.bamboo.plugins.git.NativeGitOperationHelper.checkout(NativeGitOperationHelper.java:509)
error	21-May-2026 01:40:22		at com.atlassian.bamboo.plugins.git.v2.GitWorkingCopyManager.lambda$checkout$1(GitWorkingCopyManager.java:262)
error	21-May-2026 01:40:22		at io.atlassian.util.concurrent.ManagedLocks$ManagedLockImpl.withLock(ManagedLocks.java:293)
error	21-May-2026 01:40:22		at com.atlassian.bamboo.plugins.git.GitCacheDirectory$LoggingManagedLock.withLock(GitCacheDirectory.java:48)
error	21-May-2026 01:40:22		at com.atlassian.bamboo.plugins.git.v2.GitWorkingCopyManager.checkout(GitWorkingCopyManager.java:250)
error	21-May-2026 01:40:22		at com.atlassian.bamboo.plugins.git.v2.GitWorkingCopyManager.checkout(GitWorkingCopyManager.java:202)
error	21-May-2026 01:40:22		at com.atlassian.bamboo.plugins.git.v2.GitWorkingCopyManager.retrieveSourceCode(GitWorkingCopyManager.java:122)
error	21-May-2026 01:40:22		at com.atlassian.bamboo.plugins.stash.v2.BitbucketServerWorkingCopyManager.lambda$retrieveSourceCode$4(BitbucketServerWorkingCopyManager.java:105)
error	21-May-2026 01:40:22		... 24 more
error	21-May-2026 01:40:22	Failed to prepare the build 'PIPESPECS - Pipeline Pull Request Test - PIPE-2964-hsd_baseline-use-75-quantile-as-a-representative-line-width-of-the-detected-cluster - Pipeline PR Test 6.7.4 #4 (PIPESPECS-PPRT569-PPRT674-4)'
command	21-May-2026 01:40:23	Substituting variable: ${bamboo.agentId} with 159678466
command	21-May-2026 01:40:23	Substituting variable: ${bamboo.agentId} with 159678466
command	21-May-2026 01:40:23	Substituting variable: ${bamboo.agentId} with 159678466
simple	21-May-2026 01:40:23	Starting task 'Cleanup' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script'
command	21-May-2026 01:40:23	Beginning to execute external process for build 'PIPESPECS - Pipeline Pull Request Test - PIPE-2964-hsd_baseline-use-75-quantile-as-a-representative-line-width-of-the-detected-cluster - Pipeline PR Test 6.7.4 #4 (PIPESPECS-PPRT569-PPRT674-4)'\n ... running command line: \n/opt/ci_workspace/casa/bamboo/agent9/temp/PIPESPECS-PPRT569-PPRT674-4-ScriptBuildTask-17444983633648372773.sh\n ... in: /opt/ci_workspace/casa/bamboo/agent9/xml-data/build-dir/PIPESPECS-PPRT569-PPRT674\n
build	21-May-2026 01:40:23	Starting cleanup
build	21-May-2026 01:40:23	Removed pipelinetest-159678466
simple	21-May-2026 01:40:23	Finished task 'Cleanup' with result: Success
simple	21-May-2026 01:40:26	Running on server: post build plugin 'Build Hanging Detection Configuration'
simple	21-May-2026 01:40:26	Running on server: post build plugin 'NCover Results Collector'
simple	21-May-2026 01:40:26	Running on server: post build plugin 'Build Labeller'
simple	21-May-2026 01:40:26	Running on server: post build plugin 'Clover Delta Calculator'
simple	21-May-2026 01:40:26	Running on server: post build plugin 'Maven Dependencies Postprocessor'
simple	21-May-2026 01:40:26	All post build plugins have finished
simple	21-May-2026 01:40:26	Generating build results summary...
simple	21-May-2026 01:40:26	Saving build results to disk...
simple	21-May-2026 01:40:26	Store variable context...
simple	21-May-2026 01:40:26	Finished building PIPESPECS-PPRT569-PPRT674-4.