Coverage for /wheeldirectory/casa-6.7.0-12-py3.10.el8/lib/py/lib/python3.10/site-packages/casatasks/private/task_flagdata.py: 74%
437 statements
« prev ^ index » next coverage.py v7.6.4, created at 2024-11-01 07:19 +0000
1import time
2import os
3import sys
4import copy
5import pprint
6import numpy as np
8from . import flaghelper as fh
9from .mstools import write_history
10from .parallel.parallel_task_helper import ParallelTaskHelper
11from .parallel.parallel_data_helper import ParallelDataHelper
12# this should be replaced when CASA really moves to Python 2.7
13from collections import OrderedDict
14from casatasks import casalog
15from casatools import ms, agentflagger, quanta, table
17localqa = quanta()
19debug = False
21# Helper class
22class FlagHelper(ParallelTaskHelper):
23 def __init__(self, args={}):
24 self.__args = args
26 def setupInputFile(self, parname):
27 '''Create a temporary input file with
28 absolute pathnames for other input files
29 such as addantenna, timedev, freqdev.
30 The temporary input file will have the same
31 name with an extension .tmp'''
33 newpar = None
34 if isinstance(parname, str) and parname != '':
35 newpar = fh.addAbsolutePath(parname)
36 elif isinstance(parname, list) and os.path.isfile(parname[0]):
37 newpar = []
38 for i in range(len(parname)):
39 newpar.append(fh.addAbsolutePath(parname[i]))
41 return newpar
43 def setupCluster(self, thistask=''):
44 '''Get a cluster to execute this task'''
45 if thistask == '':
46 thistask = 'flagdata'
48 ParallelTaskHelper.__init__(self, task_name=thistask, args=self.__args)
50 def setupRflag(self, devpar):
51 '''cast rflag's list parameters from numpy types to Python types
52 devpar --> list of numeric parameters or list of list
53 such as timedev or freqdev'''
55 nt = copy.deepcopy(devpar)
56 for i in range(len(nt)):
57 if (isinstance(nt[i],list)):
58 nnt = nt[i]
59 for j in range(len(nnt)):
60 elem = fh.evaluateNumpyType(nnt[j])
61 # write the casted element back
62 devpar[i][j] = elem
65# The flagdata task
66def flagdata(vis,
67 mode,
68 autocorr, # mode manual parameter
69 inpfile, # mode list parameters
70 reason,
71 tbuff,
72 spw, # data selection parameters
73 field,
74 antenna,
75 uvrange,
76 timerange,
77 correlation,
78 scan,
79 intent,
80 array,
81 observation,
82 feed,
83 clipminmax, # mode clip parameters
84 datacolumn,
85 clipoutside,
86 channelavg,
87 chanbin,
88 timeavg,
89 timebin,
90 clipzeros,
91 quackinterval, # mode quack parameters
92 quackmode,
93 quackincrement,
94 tolerance, # mode shadow parameter
95 addantenna,
96 lowerlimit, # mode elevation parameters
97 upperlimit,
98 ntime, # mode tfcrop
99 combinescans,
100 timecutoff,
101 freqcutoff,
102 timefit,
103 freqfit,
104 maxnpieces,
105 flagdimension,
106 usewindowstats,
107 halfwin,
108 extendflags,
109 winsize, # rflag parameters
110 timedev,
111 freqdev,
112 timedevscale,
113 freqdevscale,
114 spectralmax,
115 spectralmin,
116 antint_ref_antenna, # mode antint
117 minchanfrac,
118 verbose,
119 extendpols, # mode extend
120 growtime,
121 growfreq,
122 growaround,
123 flagneartime,
124 flagnearfreq,
125 minrel, # mode summary
126 maxrel,
127 minabs,
128 maxabs,
129 spwchan,
130 spwcorr,
131 basecnt,
132 fieldcnt,
133 name,
134 action, # run or not the tool
135 display,
136 flagbackup,
137 savepars, # save the current parameters to FLAG_CMD or to a file
138 cmdreason, # reason to save to flag cmd
139 outfile, # output file to save flag commands
140 overwrite, # overwrite the outfile file
141 writeflags # HIDDEN parameter
142 ):
145 #
146 # Task flagdata
147 # Flags data from an MS or calibration table based on data selection in various ways
149 casalog.origin('flagdata')
151 if (action == 'none' or action=='' or action=='calculate'):
152 flagbackup = False
154 # SMC: moved the flagbackup to before initializing the cluster.
155 # Note that with this change, a flag backup will be created even if
156 # an error happens that prevents the flagger tool from running.
157 if (mode != 'summary' and flagbackup):
158 casalog.post('Backup original flags before applying new flags')
159 fh.backupFlags(aflocal=None, msfile=vis, prename='flagdata')
160 # Set flagbackup to False because only the controller
161 # should create a backup
162 flagbackup = False
164 # Initialize the helper class
165 orig_locals = copy.deepcopy(locals())
166 FHelper = FlagHelper()
168 # Check if vis is a MS, MMS or cal table:
169 # typevis = 1 --> cal table
170 # typevis = 0 --> MS
171 # typevis = 2 --> MMS
172 iscal = False
173 typevis = fh.isCalTable(vis)
174 if typevis == 1:
175 iscal = True
178 # ***************** Input is MMS -- Parallel Processing ***********************
179 if typevis == 2 and ParallelDataHelper.isMMSAndNotServer(vis) and\
180 action != '' and action != 'none':
182 # Create a temporary input file with .tmp extension.
183 # Use this file for all the processing from now on.
184 if (isinstance(inpfile,str) and inpfile != '') or \
185 (isinstance(inpfile, list) and os.path.isfile(inpfile[0])):
186 inpfile = FHelper.setupInputFile(inpfile)
187 if inpfile != None:
188 orig_locals['inpfile'] = inpfile
190 if outfile != '':
191 outfile = os.path.abspath(outfile)
192 orig_locals['outfile'] = outfile
193 if isinstance(addantenna, str) and addantenna != '':
194 addantenna = os.path.abspath(addantenna)
195 orig_locals['addantenna'] = addantenna
196 if isinstance(timedev, str) and timedev != '':
197 timedev = os.path.abspath(timedev)
198 orig_locals['timedev'] = timedev
199 if isinstance(freqdev, str) and freqdev != '':
200 freqdev = os.path.abspath(freqdev)
201 orig_locals['freqdev'] = freqdev
202 # Conversion np.array->list if needed. np.array can be a problem with MMS, as it
203 # would require in the servers an import of np.array with the same name used by the
204 # caller
205 if isinstance(timedev, np.ndarray):
206 orig_locals['timedev'] = timedev.tolist()
207 if isinstance(freqdev, np.ndarray):
208 orig_locals['freqdev'] = freqdev.tolist()
210 FHelper.__init__(orig_locals)
212 # For tests only
213 # FHelper.bypassParallelProcessing(1)
215 FHelper.setupCluster('flagdata')
216 # (CAS-4119): Override summary minabs,maxabs,minrel,maxrel
217 # so that it is done after consolidating the summaries
219 # By-pass options to filter summary
220 filterSummary = False
221 if ((mode == 'summary') and ((minrel != 0.0) or (maxrel != 1.0) or (minabs != 0) or (maxabs != -1))):
222 filterSummary = True
224 myms = ms()
225 myms.open(vis)
226 subMS_list = myms.getreferencedtables()
227 myms.close()
229 if (minrel != 0.0):
230 minreal_dict = create_arg_dict(subMS_list,0.0)
231 FHelper.override_arg('minrel',minreal_dict)
232 if (maxrel != 1.0):
233 maxrel_dict = create_arg_dict(subMS_list,1.0)
234 FHelper.override_arg('maxrel',maxrel_dict)
235 if (minabs != 0):
236 minabs_dict = create_arg_dict(subMS_list,0)
237 FHelper.override_arg('minabs',minabs_dict)
238 if (maxabs != -1):
239 maxabs_dict = create_arg_dict(subMS_list,-1)
240 FHelper.override_arg('maxabs',maxabs_dict)
242 # By-pass options to filter summary
243 if savepars:
245 myms = ms()
246 myms.open(vis)
247 subMS_list = myms.getreferencedtables()
248 myms.close()
250 savepars_dict = create_arg_dict(subMS_list,False)
251 FHelper.override_arg('savepars',savepars_dict)
253 # Execute the parallel engines
254 retVar = FHelper.go()
256 # Save overall RFlag values into timedev/freqdev files once the subMS results have
257 # been consolidated, if needed for RFlag (introduced in CAS-11850)
258 opts_dict = {'writeflags': writeflags, 'timedev': timedev, 'freqdev': freqdev}
259 fh.save_rflag_consolidated_files(mode, action, retVar, opts_dict, inpfile)
261 # In async_mode return the job ids
262 if ParallelTaskHelper.getAsyncMode():
263 return retVar
264 else:
265 # Filter summary at MMS level
266 if (mode == 'summary'):
267 if filterSummary:
268 retVar = filter_summary(retVar,minrel,maxrel,minabs,maxabs)
269 return retVar
270 # Save parameters at MMS level
271 elif savepars:
272 action = 'none'
273 else:
274 return retVar
276 summary_stats={};
279 # ***************** Input is a normal MS/cal table ****************
281 # Create local tools
282 aflocal = agentflagger()
283 mslocal = ms()
285 # Verify the ntime value
286 newtime = 0.0
287 if type(ntime) == float or type(ntime) == int:
288 if ntime <= 0:
289 raise ValueError('Parameter ntime cannot be < = 0')
290 else:
291 # units are seconds
292 newtime = float(ntime)
294 elif type(ntime) == str:
295 if ntime == 'scan':
296 # iteration time step is a scan
297 newtime = 0.0
298 else:
299 # read the units from the string
300 qtime = localqa.quantity(ntime)
302 if qtime['unit'] == 'min':
303 # convert to seconds
304 qtime = localqa.convert(qtime, 's')
305 elif qtime['unit'] == '':
306 qtime['unit'] = 's'
308 # check units
309 if qtime['unit'] == 's':
310 newtime = qtime['value']
311 else:
312 casalog.post('Cannot convert units of ntime. Will use default 0.0s', 'WARN')
314 casalog.post("New ntime is of type %s and value %s"%(type(newtime),newtime), 'DEBUG')
316 try:
317 # Open the MS and attach it to the tool
318 if ((type(vis) == str) & (os.path.exists(vis))):
319 aflocal.open(vis, newtime)
320 else:
321 raise ValueError('Visibility data set not found - please verify the name')
324 # Get the parameters for the mode
325 agent_pars = {}
327 # By default, write flags to the MS
328 writeflags = True
330 # Only the apply action writes to the MS
331 # action=apply --> write to the MS
332 # action=calculate --> do not write to the MS
333 # action='' --> do not run the tool and do not write to the MS
334 if action != 'apply':
335 writeflags = False
337 # Default mode
338 if mode == '' or mode == 'manualflag':
339 mode = 'manual'
341 # Read in the list of commands
342 # Make a dictionary of the input commands. Select by reason if requested
343 flagcmd = {}
345 if mode == 'list':
346 casalog.post('List mode is active')
347 doPadding = True
348 try:
349 # If tbuff is requested, read and Parse
350 if tbuff == 0.0 or tbuff == [] or tbuff == None:
351 doPadding = False
353 if doPadding:
354 casalog.post('Will apply time buffer padding')
356 # inpfile is a file
357 if isinstance(inpfile, str):
358 inpfile = [inpfile]
360 # read in the list and do a simple parsing to apply tbuff
361 flaglist = fh.readAndParse(inpfile, tbuff)
363 else:
364 flaglist = fh.get_flag_cmd_list(inpfile)
367 # Parse and create a dictionary
368 flagcmd = fh.parseDictionary(flaglist, reason)
370 # Validate the dictionary.
371 # IMPORTANT: if any parameter changes its type, the following
372 # function needs to be updated. The same if any new parameter is
373 # added or removed from the task
374 fh.evaluateFlagParameters(flagcmd,orig_locals)
376 # List of flag commands in dictionary
377 vrows = flagcmd.keys()
379 casalog.post('%s'%flagcmd,'DEBUG1')
382 except Exception as instance:
383 casalog.post('%s'%instance,'ERROR')
384 raise ValueError('Error reading the input list. Make sure the syntax used in '
385 'the list follows the rules given in the inline help of the '
386 'task.')
388 casalog.post('Selected ' + str(vrows.__len__())
389 + ' commands from combined input list(s) ')
391 elif mode == 'manual':
392 agent_pars['autocorr'] = autocorr
393 casalog.post('Manual mode is active')
396 elif mode == 'clip':
398 agent_pars['datacolumn'] = datacolumn.upper()
399 agent_pars['clipoutside'] = clipoutside
400 agent_pars['channelavg'] = channelavg
401 agent_pars['chanbin'] = chanbin
402 agent_pars['timeavg'] = timeavg
403 agent_pars['timebin'] = timebin
404 agent_pars['clipzeros'] = clipzeros
407 if type(clipminmax) != list:
408 casalog.post('Error : clipminmax must be a list : [min,max]', 'ERROR')
409 # If clipminmax = [], do not write it in the dictionary.
410 # It will be handled by the framework to flag NaNs only
411 if clipminmax.__len__() == 2:
412 # Cast to float to avoid the missing decimal point
413 clipmin = float(clipminmax[0])
414 clipmax = float(clipminmax[1])
415 clipminmax = []
416 clipminmax.append(clipmin)
417 clipminmax.append(clipmax)
418 agent_pars['clipminmax'] = clipminmax
420 casalog.post('Clip mode is active')
422 elif mode == 'shadow':
424 agent_pars['tolerance'] = tolerance
426 if type(addantenna) == str:
427 if addantenna != '':
428 # it's a filename, create a dictionary
429 antdict = fh.readAntennaList(addantenna)
430 agent_pars['addantenna'] = antdict
432 elif type(addantenna) == dict:
433 if addantenna != {}:
434 agent_pars['addantenna'] = addantenna
436 casalog.post('Shadow mode is active')
438 elif mode == 'quack':
439 agent_pars['quackmode'] = quackmode
440 agent_pars['quackinterval'] = quackinterval
441 agent_pars['quackincrement'] = quackincrement
442 casalog.post('Quack mode is active')
445 elif mode == 'elevation':
447 agent_pars['lowerlimit'] = lowerlimit
448 agent_pars['upperlimit'] = upperlimit
449 casalog.post('Elevation mode is active')
452 elif mode == 'tfcrop':
454 agent_pars['ntime'] = newtime
455 agent_pars['combinescans'] = combinescans
456 agent_pars['datacolumn'] = datacolumn.upper()
457 agent_pars['timecutoff'] = timecutoff
458 agent_pars['freqcutoff'] = freqcutoff
459 agent_pars['timefit'] = timefit
460 agent_pars['freqfit'] = freqfit
461 agent_pars['maxnpieces'] = maxnpieces
462 agent_pars['flagdimension'] = flagdimension
463 agent_pars['usewindowstats'] = usewindowstats
464 agent_pars['halfwin'] = halfwin
465 agent_pars['extendflags'] = bool(extendflags)
466 agent_pars['channelavg'] = channelavg
467 agent_pars['chanbin'] = chanbin
468 agent_pars['timeavg'] = timeavg
469 agent_pars['timebin'] = timebin
470 casalog.post('Time and Frequency (tfcrop) mode is active')
473 elif mode == 'rflag':
474 if newtime != 0.0:
475 # this means ntime='scan', the default
476 agent_pars['ntime'] = newtime
478 agent_pars['combinescans'] = combinescans
479 agent_pars['datacolumn'] = datacolumn.upper()
480 agent_pars['winsize'] = winsize
481 agent_pars['timedevscale'] = timedevscale
482 agent_pars['freqdevscale'] = freqdevscale
483 agent_pars['spectralmax'] = spectralmax
484 agent_pars['spectralmin'] = spectralmin
485 agent_pars['extendflags'] = bool(extendflags)
487 # These can be double, doubleArray, or string.
488 # writeflags=False : calculate and return thresholds.
489 # writeflags=True : use given thresholds for this run.
490 if writeflags == True:
491 if isinstance(timedev, str):
492 timedev = fh.readRFlagThresholdFile(timedev,'timedev')
493 if isinstance(freqdev, str):
494 freqdev = fh.readRFlagThresholdFile(freqdev,'freqdev')
496 agent_pars['timedev'] = timedev
497 agent_pars['freqdev'] = freqdev
499 agent_pars['writeflags'] = writeflags
500 agent_pars['display'] = display
502 agent_pars['channelavg'] = channelavg
503 agent_pars['chanbin'] = chanbin
504 agent_pars['timeavg'] = timeavg
505 agent_pars['timebin'] = timebin
507 casalog.post('Rflag mode is active')
509 elif mode == 'antint':
510 agent_pars['antint_ref_antenna'] = antint_ref_antenna
511 agent_pars['minchanfrac'] = minchanfrac
512 agent_pars['verbose'] = verbose
514 elif mode == 'extend':
515 agent_pars['ntime'] = newtime
516 agent_pars['combinescans'] = combinescans
517 agent_pars['extendpols'] = extendpols
518 agent_pars['growtime'] = growtime
519 agent_pars['growfreq'] = growfreq
520 agent_pars['growaround'] = growaround
521 agent_pars['flagneartime'] = flagneartime
522 agent_pars['flagnearfreq'] = flagnearfreq
523 casalog.post('Extend mode is active')
526 elif mode == 'unflag':
527 casalog.post('Unflag mode is active')
529 elif mode == 'summary':
530 agent_pars['spwchan'] = spwchan
531 agent_pars['spwcorr'] = spwcorr
532 agent_pars['basecnt'] = basecnt
533 agent_pars['fieldcnt'] = fieldcnt
534 agent_pars['name'] = name
535 agent_pars['display'] = display
537 # Disable writeflags and savepars
538 writeflags = False
539 savepars = False
540 casalog.post('Summary mode is active')
543 # Add the mode to the agent's parameters
544 agent_pars['mode'] = mode
546 # Correlation does not go in selectdata, but in the agent's parameters
547 if correlation != '':
548 agent_pars['correlation'] = correlation.upper()
550 # Create a flagcmd dictionary of the interface parameters for saving
551 if mode != 'list' and mode != 'summary':
552 # Create a dictionary of the selection parameters
553 seldic = {}
554 seldic['field'] = field
555 seldic['spw'] = spw
556 seldic['array'] = array
557 seldic['feed'] = feed
558 seldic['scan'] = scan
559 seldic['antenna'] = antenna
560 seldic['uvrange'] = uvrange
561 seldic['timerange'] = timerange
562 seldic['intent'] = intent
563 seldic['observation'] = str(observation)
565 # Add the agent's parameters
566 seldic.update(agent_pars)
568 tempdict = copy.deepcopy(seldic)
569 # Remove the empty parameters
570 for k,v in seldic.items():
571 if isinstance(v, str) and v == '':
572 tempdict.pop(k)
574 cmddict = {'command':tempdict}
575 cmddict['reason'] = ''
576 cmddict['applied'] = False
577 flagcmd[0] = cmddict
579 # Number of commands in dictionary
580 vrows = flagcmd.keys()
581 casalog.post('There are %s cmds in dictionary of mode %s'%(vrows.__len__(),mode),'DEBUG1')
583 modified_flagcmd = flagcmd
585 # Setup global parameters in the agent's dictionary
586 apply = True
588 # Hold the name of the agent
589 agent_name = mode.capitalize()
590 agent_pars['agentname'] = agent_name
591 agent_pars['apply'] = apply
593 ########## Only save the parameters and exit; action = ''
594 if action == '' or action == 'none':
595 if savepars == False:
596 casalog.post('Parameter action=\'\' is only meaningful with savepars=True.', 'WARN')
597 aflocal.done()
598 return summary_stats
600 else:
601 if iscal and outfile == '':
602 casalog.post('Saving to FLAG_CMD is not supported for cal tables', 'WARN')
604 if not overwrite and os.path.exists(outfile):
605 raise ValueError('You have set overwrite to False. Remove %s before saving the flag commands'%outfile)
607 else:
608 fh.writeFlagCommands(vis, flagcmd, writeflags, cmdreason, outfile, False)
610 aflocal.done()
611 return summary_stats
614 ######### From now on it is assumed that action = apply or calculate
616 # Select the data and parse the agent's parameters
617 if mode != 'list':
618 aflocal.selectdata(field=field, spw=spw, array=array, feed=feed, scan=scan, \
619 antenna=antenna, uvrange=uvrange, timerange=timerange, \
620 intent=intent, observation=str(observation))
622 # CAS-3959 Handle channel selection at the FlagAgent level
623 agent_pars['spw'] = spw
624 casalog.post('Parsing the parameters for %s mode'%mode, 'DEBUG1')
625 if (not aflocal.parseagentparameters(agent_pars)):
626 # casalog.post('Failed to parse parameters for mode %s' %mode, 'ERROR')
627 raise ValueError('Failed to parse parameters for mode %s' %mode)
629 casalog.post('%s'%agent_pars, 'DEBUG')
631 else:
632 # Select a loose union of the data selection from the list
633 # The loose union will be calculated for field and spw only;
634 # antenna, correlation and timerange should be handled by the agent
635 if vrows.__len__() == 0:
636 raise ValueError('There are no valid commands in list')
638 unionpars = {}
640 if vrows.__len__() == 1:
641 unionpars = fh.parseSelectionPars(flagcmd[0]['command'])
642 casalog.post('The selected subset of the MS will be: ');
643 casalog.post('%s'%unionpars);
645 aflocal.selectdata(unionpars);
647 # Parse the parameters for each agent in the list
648 # Get the returned modified dictionary of flag commands which
649 # is needed by the rflag agent, when present in a list
650 modified_flagcmd = fh.parseAgents(aflocal, flagcmd, [], apply, writeflags, display)
652 # Do display if requested
653 if display != '':
655 agent_pars = {}
656 casalog.post('Parsing the display parameters')
658 agent_pars['mode'] = 'display'
659 # need to create different parameters for both, data and report.
660 if display == 'both':
661 agent_pars['datadisplay'] = True
662 agent_pars['reportdisplay'] = True
664 elif display == 'data':
665 agent_pars['datadisplay'] = True
667 elif display == 'report':
668 agent_pars['reportdisplay'] = True
670 # CAS-3966 Add datacolumn to display agent parameters
671 # Check if FLOAT_DATA exist instead
672 tblocal = table()
673 tblocal.open(vis)
674 allcols = tblocal.colnames()
675 tblocal.close()
676 float_data = 'FLOAT_DATA' in allcols
677 if datacolumn.upper() == 'DATA' and float_data == True:
678 datacolumn = 'FLOAT_DATA'
680 agent_pars['datacolumn'] = datacolumn.upper()
681 ret = aflocal.parseagentparameters(agent_pars)
682 if not ret:
683 casalog.post('Unable to load the display. Please check the datacolumn','ERROR')
685 # Disable saving the parameters to avoid inconsistencies
686 if savepars:
687 casalog.post('Disabling savepars for the display', 'WARN')
688 savepars = False
690 # Initialize the agents
691 casalog.post('Initializing the agents')
692 aflocal.init()
694 # Run the tool
695 casalog.post('Running the agentflagger tool')
696 summary_stats_list = aflocal.run(writeflags, True)
698 # Inform the user when flags are not written to the MS
699 if not writeflags:
700 casalog.post("Flags are not written to the MS. (action=\'calculate\')")
703 # Now, deal with all the modes that return output.
704 # Rflag : There can be many 'rflags' in list mode.
706 ## Pull out RFlag outputs. There will be outputs only if writeflags=False
707 if (mode == 'rflag' or mode== 'list') and (writeflags==False):
708 casalog.post('Saving RFlag return dictionary: {0}'.
709 format(pprint.pformat(summary_stats_list)), 'INFO')
710 fh.parseRFlagOutputFromSummary(mode, summary_stats_list, modified_flagcmd)
713 # Save the current parameters/list to FLAG_CMD or to output
714 if savepars:
715 if not overwrite and os.path.exists(outfile):
716 raise RuntimeError('You have set overwrite to False. Remove %s before saving the flag commands'%outfile)
718 # Cal table type
719 if iscal:
720 if outfile == '':
721 casalog.post('Saving to FLAG_CMD is not supported for cal tables', 'WARN')
722 else:
723 casalog.post('Saving parameters to '+outfile)
724 fh.writeFlagCommands(vis, flagcmd, writeflags, cmdreason, outfile, False)
726 # MS type
727 else:
728 if outfile == '':
729 casalog.post('Saving parameters to FLAG_CMD')
730 else:
731 casalog.post('Saving parameters to '+outfile)
733 fh.writeFlagCommands(vis, flagcmd, writeflags, cmdreason, outfile, False)
735 finally:
736 # Destroy the tool
737 aflocal.done()
739 retval = True
740 # Write history to the MS. Only for modes that write to the MS
741 if not iscal:
742 if mode != 'summary' and action == 'apply':
743 try:
744 param_names = flagdata.__code__.co_varnames[:flagdata.__code__.co_argcount]
745 vars = locals( )
746 param_vals = [vars[p] for p in param_names]
748 retval &= write_history(mslocal, vis, 'flagdata', param_names,
749 param_vals, casalog)
751 except Exception as instance:
752 casalog.post("*** Error \'%s\' updating HISTORY" % (instance),
753 'WARN')
755 # Pull out the 'summary' reports of summary_stats_list.
756 if mode == 'summary' or mode == 'list':
757 ordered_summary_list = OrderedDict(summary_stats_list)
758 nreps = ordered_summary_list['nreport']
759 if nreps > 0:
760 for rep in range(0,nreps):
761 repname = "report"+str(rep)
762 if ordered_summary_list[repname]['type'] != "summary":
763 ordered_summary_list.pop(repname)
764 else:
765 # apply requested filtering
766 summary_stats = ordered_summary_list.pop(repname);
767 summary_stats = filter_summary(summary_stats,minrel,maxrel,minabs,maxabs)
768 # add filtered dictionary back
769 ordered_summary_list[repname] = summary_stats
771 # Clean up the dictionary before returning it
772 ordered_summary_list.pop('type')
773 ordered_summary_list.pop('nreport')
775 if len(ordered_summary_list) == 1:
776 repkey = list(ordered_summary_list.keys())
777 summary_stats_list = ordered_summary_list.pop(repkey[0])
778 else:
779 # rename the keys of the dictionary according to
780 # the number of reports left in dictionary
781 counter = 0
782 summary_reports = OrderedDict()
783 for k in ordered_summary_list.keys():
784 repname = "report"+str(counter)
785 summary_reports[repname] = ordered_summary_list[k]
786 counter += 1
788 summary_stats_list = dict(summary_reports)
790 # for when there is no summary mode in a list
791 else:
792 summary_stats_list = {}
794 elif mode == 'rflag' and action == 'calculate':
795 # keep the dictionary of rflag intact and return it
796 pass
797 else:
798 summary_stats_list = {}
800 return summary_stats_list
802# Helper functions
803def delspace(word, replace):
804 '''Replace the white space of a string with another character'''
806 newword = word
807 if word.count(' ') > 0:
808 newword = word.replace(' ', replace)
810 return newword
812def filter_summary(summary_stats,minrel,maxrel,minabs,maxabs):
814 if type(summary_stats) is dict:
815 if 'flagged' in summary_stats and \
816 'total' in summary_stats and \
817 not 'type' in summary_stats:
818 if (summary_stats['flagged'] < minabs) or \
819 (summary_stats['flagged'] > maxabs and maxabs >= 0) or \
820 (summary_stats['flagged'] * 1.0 / summary_stats['total'] < minrel) or \
821 (summary_stats['flagged'] * 1.0 / summary_stats['total'] > maxrel):
822 return None
823 else:
824 for x in list(summary_stats.keys()):
825 res = filter_summary(summary_stats[x],minrel,maxrel,minabs,maxabs)
826 if res == None: del summary_stats[x]
828 return summary_stats
830def create_arg_dict(subMS_list,value):
832 ret_dict = []
833 for subMS in subMS_list:
834 ret_dict.append(value)
836 return ret_dict