LCOV - code coverage report
Current view: top level - synthesis/TransformMachines - AWConvFunc.cc (source / functions) Hit Total Coverage
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Date: 2024-10-29 13:38:20 Functions: 0 24 0.0 %

          Line data    Source code
       1             : // -*- C++ -*-
       2             : //# AWConvFunc.cc: Implementation of the AWConvFunc class
       3             : //# Copyright (C) 1997,1998,1999,2000,2001,2002,2003
       4             : //# Associated Universities, Inc. Washington DC, USA.
       5             : //#
       6             : //# This library is free software; you can redistribute it and/or modify it
       7             : //# under the terms of the GNU Library General Public License as published by
       8             : //# the Free Software Foundation; either version 2 of the License, or (at your
       9             : //# option) any later version.
      10             : //#
      11             : //# This library is distributed in the hope that it will be useful, but WITHOUT
      12             : //# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
      13             : //# FITNESS FOR A PARTICULAR PURPOSE.  See the GNU Library General Public
      14             : //# License for more details.
      15             : //#
      16             : //# You should have received a copy of the GNU Library General Public License
      17             : //# along with this library; if not, write to the Free Software Foundation,
      18             : //# Inc., 675 Massachusetts Ave, Cambridge, MA 02139, USA.
      19             : //#
      20             : //# Correspondence concerning AIPS++ should be addressed as follows:
      21             : //#        Internet email: casa-feedback@nrao.edu.
      22             : //#        Postal address: AIPS++ Project Office
      23             : //#                        National Radio Astronomy Observatory
      24             : //#                        520 Edgemont Road
      25             : //#                        Charlottesville, VA 22903-2475 USA
      26             : //#
      27             : //# $Id$
      28             : //
      29             : #include <synthesis/TransformMachines/AWConvFunc.h>
      30             : #include <synthesis/TransformMachines/AWProjectFT.h>
      31             : #include <synthesis/TransformMachines/SynthesisError.h>
      32             : #include <casacore/images/Images/ImageInterface.h>
      33             : #include <synthesis/TransformMachines/Utils.h>
      34             : #include <synthesis/TransformMachines/BeamCalc.h>
      35             : #include <synthesis/TransformMachines/CFStore.h>
      36             : #include <synthesis/TransformMachines/CFStore2.h>
      37             : #include <synthesis/TransformMachines/PSTerm.h>
      38             : #include <synthesis/TransformMachines/WTerm.h>
      39             : #include <synthesis/TransformMachines/ATerm.h>
      40             : #include <synthesis/TransformMachines/VLACalcIlluminationConvFunc.h>
      41             : #include <synthesis/TransformMachines/ConvolutionFunction.h>
      42             : #include <synthesis/TransformMachines/PolOuterProduct.h>
      43             : #include <casacore/coordinates/Coordinates/DirectionCoordinate.h>
      44             : #include <casacore/coordinates/Coordinates/LinearCoordinate.h>
      45             : #include <casacore/coordinates/Coordinates/SpectralCoordinate.h>
      46             : #include <casacore/coordinates/Coordinates/StokesCoordinate.h>
      47             : #include <casacore/casa/System/ProgressMeter.h>
      48             : #include <casacore/lattices/LatticeMath/LatticeFFT.h>
      49             : #include <casacore/casa/Utilities/CompositeNumber.h>
      50             : #include <casacore/casa/OS/Directory.h>
      51             : #include <casacore/casa/OS/Timer.h>
      52             : #include <ostream>
      53             : #ifdef _OPENMP
      54             : #include <omp.h>
      55             : #endif
      56             : 
      57             : #define MAX_FREQ 1e30
      58             : 
      59             : using namespace casacore;
      60             : namespace casa{
      61           0 :   AWConvFunc::AWConvFunc(const casacore::CountedPtr<ATerm> aTerm,
      62             :                          const casacore::CountedPtr<PSTerm> psTerm,
      63             :                          const casacore::CountedPtr<WTerm> wTerm,
      64             :                          const casacore::Bool wbAWP,
      65           0 :                          const casacore::Bool conjPB):
      66           0 :     ConvolutionFunction(),aTerm_p(aTerm),psTerm_p(psTerm), wTerm_p(wTerm), pixFieldGrad_p(), 
      67           0 :     wbAWP_p(wbAWP), conjPB_p(conjPB), baseCFB_p()
      68             :   {
      69           0 :     LogIO log_l(LogOrigin("AWConvFunc", "AWConvFunc"));
      70           0 :     if (psTerm->isNoOp() && aTerm->isNoOp())
      71           0 :       log_l << "Both, psterm and aterm cannot be set to NoOp. " << LogIO::EXCEPTION;
      72             :     
      73           0 :     if (wbAWP && aTerm->isNoOp())
      74             :       {
      75             :         //log_l << "wbawp=True is ineffective when aterm is OFF.  Setting wbawp to False." << LogIO::NORMAL1;
      76           0 :         wbAWP_p=false;
      77             :       }
      78             :     
      79           0 :     pixFieldGrad_p.resize(2);pixFieldGrad_p=0.0;
      80           0 :   }
      81             :   //
      82             :   //----------------------------------------------------------------------
      83             :   //
      84           0 :   AWConvFunc& AWConvFunc::operator=(const AWConvFunc& other)
      85             :   {
      86           0 :     if(this!=&other) 
      87             :       {
      88           0 :         aTerm_p = other.aTerm_p;
      89           0 :         psTerm_p = other.psTerm_p;
      90           0 :         wTerm_p = other.wTerm_p;
      91             :       }
      92           0 :     return *this;
      93             : 
      94             :   }
      95             :   //
      96             :   //----------------------------------------------------------------------
      97             :   //
      98           0 :   void AWConvFunc::makePBSq(ImageInterface<Complex>& PB)
      99             :   {
     100           0 :     IPosition pbShape=PB.shape();
     101           0 :     IPosition cursorShape(4, pbShape(0), pbShape(1), 1, 1), axisPath(4,0,1,2,3);
     102           0 :     Array<Complex> buf; PB.get(buf,false);
     103           0 :     ArrayLattice<Complex> lat(buf, true);
     104           0 :     LatticeStepper latStepper(lat.shape(), cursorShape,axisPath);
     105           0 :     LatticeIterator<Complex> latIter(lat, latStepper);
     106             :     
     107           0 :     IPosition start0(4,0,0,0,0), start1(4,0,0,1,0), length(4, pbShape(0), pbShape(1),1,1);
     108           0 :     Slicer slicePol0(start0, length), slicePol1(start1, length);
     109           0 :     if (pbShape(2) > 1)
     110             :       {
     111           0 :         Array<Complex> pol0, pol1,tmp;
     112             : 
     113           0 :         lat.getSlice(pol0, slicePol0);
     114           0 :         lat.getSlice(pol1, slicePol1);
     115           0 :         tmp = pol0;
     116           0 :         pol0 = pol0*conj(pol1);
     117           0 :         pol1 = tmp*conj(pol1);
     118           0 :         lat.putSlice(pol0,start0);
     119           0 :         lat.putSlice(pol1,start1);
     120           0 :       }
     121             :     else
     122             :       {
     123             :         // Array<Complex> pol0;
     124             :         // lat.getSlice(pol0,slicePol0);
     125             :         // pol0 = pol0*conj(pol0);
     126           0 :         buf = buf * conj(buf);
     127             :       }
     128           0 :   }
     129             :   //
     130             :   //----------------------------------------------------------------------
     131             :   //
     132           0 :   void AWConvFunc::makeConjPolAxis(CoordinateSystem& cs,
     133             :                                    Int conjStokes_in)
     134             :   {
     135           0 :     LogIO log_l(LogOrigin("AWConvFunc", "makeConjPolAxis[R&D]"));
     136           0 :     IPosition dummy;
     137           0 :     Vector<String> csList;
     138           0 :     Vector<Int> stokes, conjStokes;
     139             : 
     140             :     // cout << "CoordSys: ";
     141             :     // csList = cs.list(log_l,MDoppler::RADIO,dummy,dummy);
     142             :     // cout << csList << endl;
     143           0 :     Int stokesIndex=cs.findCoordinate(Coordinate::STOKES);
     144           0 :     StokesCoordinate sc=cs.stokesCoordinate(stokesIndex);
     145             : 
     146           0 :     if (conjStokes_in == -1)
     147             :       {
     148           0 :         stokes=sc.stokes();
     149           0 :         conjStokes.resize(stokes.shape());
     150           0 :         for (uInt i=0; i<stokes.nelements(); i++)
     151             :           {
     152           0 :             if (stokes(i) == Stokes::RR) conjStokes(i) = Stokes::LL;
     153           0 :             if (stokes(i) == Stokes::LL) conjStokes(i) = Stokes::RR;
     154           0 :             if (stokes(i) == Stokes::LR) conjStokes(i) = Stokes::RL;
     155           0 :             if (stokes(i) == Stokes::RL) conjStokes(i) = Stokes::LR;
     156             : 
     157           0 :             if (stokes(i) == Stokes::XX) conjStokes(i) = Stokes::YY;
     158           0 :             if (stokes(i) == Stokes::YY) conjStokes(i) = Stokes::XX;
     159           0 :             if (stokes(i) == Stokes::YX) conjStokes(i) = Stokes::XY;
     160           0 :             if (stokes(i) == Stokes::XY) conjStokes(i) = Stokes::YX;
     161             :           }
     162             :       }
     163             :     else
     164             :       {
     165           0 :         conjStokes.resize(1);
     166           0 :         conjStokes[0]=conjStokes_in;
     167             :       }
     168           0 :     sc.setStokes(conjStokes);
     169           0 :     cs.replaceCoordinate(sc,stokesIndex);
     170           0 :   }
     171             :   //
     172             :   //----------------------------------------------------------------------
     173             :   //
     174           0 :   void AWConvFunc::fillConvFuncBuffer(CFBuffer& cfb, CFBuffer& cfWtb,
     175             :                                       const Int& nx, const Int& ny, 
     176             :                                       const Vector<Double>& freqValues,
     177             :                                       const Vector<Double>& wValues,
     178             :                                       const Double& wScale,
     179             :                                       const Double& vbPA, const Double& freqHi,
     180             :                                       const PolMapType& muellerElements,
     181             :                                       const PolMapType& muellerElementsIndex,
     182             :                                       const VisBuffer& vb, 
     183             :                                       const Float& psScale,
     184             :                                       PSTerm& psTerm, WTerm& wTerm, ATerm& aTerm,
     185             :                                       Bool isDryRun)
     186             :   {
     187             :     // Unused variable from the dark-ages era interface that should ultimately go.
     188             :     (void)psScale;
     189             :     (void)muellerElementsIndex;
     190             :     (void)freqHi;
     191           0 :     LogIO log_l(LogOrigin("AWConvFunc", "fillConvFuncBuffer[R&D]"));
     192             :     //    Int ttt=0;
     193           0 :     Complex cfNorm, cfWtNorm;
     194             :     //Double vbPA = getPA(vb);
     195           0 :     Complex cpeak,wtcpeak;
     196           0 :     aTerm.cacheVBInfo(vb);
     197             : 
     198           0 :     for (uInt imx=0;imx<muellerElements.nelements();imx++) // Loop over all MuellerElements
     199           0 :       for (uInt imy=0;imy<muellerElements(imx).nelements();imy++)
     200             :         {
     201             :           {
     202           0 :             for (uInt inu=0;inu<freqValues.nelements();inu++) // All freq. channels
     203             :               {
     204             :                 Float sampling, samplingWt;
     205             :                 Int xSupport, ySupport, xSupportWt, ySupportWt;
     206           0 :                 CoordinateSystem cs_l;
     207             :                 // Extract the parameters index by (MuellerElement, Freq, W)
     208           0 :                 cfWtb.getParams(cs_l, samplingWt, xSupportWt, ySupportWt, 
     209           0 :                                 freqValues(inu), 
     210             :                                 //                              wValues(iw), 
     211           0 :                                 wValues(0), 
     212           0 :                                 muellerElements(imx)(imy));
     213           0 :                 cfb.getParams(cs_l, sampling, xSupport, ySupport, 
     214           0 :                               freqValues(inu), 
     215           0 :                               wValues(0), 
     216           0 :                               muellerElements(imx)(imy));
     217           0 :                 IPosition pbshp(4,nx,ny,1,1);
     218             :                 //
     219             :                 // Cache the A-Term for this polarization and frequency
     220             :                 //
     221           0 :                 Double conjFreq=SynthesisUtils::conjFreq(freqValues(inu),imRefFreq_p);
     222             :                 Int conjFreqIndex;
     223           0 :                 conjFreq=SynthesisUtils::nearestValue(freqValues, conjFreq, conjFreqIndex);
     224             : 
     225             : //              cout<<"Muller Array = "<<muellerElements(imx)(imy)<<"\n" ;
     226             :                 // USEFUL DEBUG MESSAGE
     227             : //               cerr << "Freq. values: " 
     228             : //                    << freqValues(inu) << " " 
     229             : //                    << imRefFreq_p << " " 
     230             : //                    << conjFreq << " " 
     231             : //                    << endl;
     232             : 
     233           0 :                 CoordinateSystem conjPolCS_l=cs_l;  AWConvFunc::makeConjPolAxis(conjPolCS_l);
     234           0 :                 TempImage<Complex> ftATerm_l(pbshp, cs_l), ftATermSq_l(pbshp,conjPolCS_l);
     235             :                 Int index;
     236           0 :                 Vector<Int> conjPol;
     237           0 :                 index = conjPolCS_l.findCoordinate(Coordinate::STOKES);
     238           0 :                 conjPol = conjPolCS_l.stokesCoordinate(index).stokes();
     239             :                 //cerr << "ConjPol = " << conjPol << endl;
     240             : 
     241             :                 // {
     242             :                 //   // Vector<Double> chanFreq = vb.frequency();
     243             :                 //   CoordinateSystem skyCS(ftATerm_l.coordinates());
     244             :                 //   Int index = skyCS.findCoordinate(Coordinate::SPECTRAL);
     245             :                 //   SpectralCoordinate SpC = skyCS.spectralCoordinate(index);
     246             :                 //   Vector<Double> refVal = SpC.referenceValue();
     247             :                   
     248             :                 //   Double ff = refVal[0];
     249             :                 //   cerr << "Freq, ConjFreq: " << freqValues(inu) << " " << conjFreq << " " << ff << endl;
     250             :                 // }
     251             : 
     252             : 
     253           0 :                 Bool doSquint=true;
     254             :                 //              Bool doSquint=false; Complex tt;
     255           0 :                 ftATerm_l.set(Complex(1.0,0.0));   ftATermSq_l.set(Complex(1.0,0.0));
     256             : 
     257           0 :                 Int me=muellerElements(imx)(imy);
     258           0 :                 if (!isDryRun)
     259             :                   {
     260           0 :                     aTerm.applySky(ftATerm_l, vb, doSquint, 0, me, freqValues(inu));//freqHi);
     261             :                     // {
     262             :                     //   ostringstream name;
     263             :                     //   name << "ftATerm" << "_" << inu << "_" << muellerElements(imx)(imy) <<".im";
     264             :                     //   storeImg(name,ftATerm_l);
     265             :                     // }
     266             :                     //tt=max(ftATerm_l.get()); ftATerm_l.put(ftATerm_l.get()/tt);
     267           0 :                     if (conjPB_p) aTerm.applySky(ftATermSq_l, vb, doSquint, 0,me,conjFreq);
     268           0 :                     else aTerm.applySky(ftATermSq_l, vb, doSquint, 0,me,freqValues(inu));
     269             :                   }
     270             : 
     271             :                 //tt=max(ftATermSq_l.get()); ftATermSq_l.put(abs(ftATermSq_l.get()/tt));
     272             : 
     273             :                 //{
     274             :                 //   ostringstream name;
     275             :                 //   name << "ftTermSq" << "_" << muellerElements(imx)(imy) <<".im";
     276             :                 //   storeImg(name,ftATermSq_l);
     277             :                 //}
     278             :                 // TempImage<Complex> ftATermSq_l(pbshp,cs_l);
     279             :                 // ftATermSq_l.set(Complex(1.0,0.0));
     280             :                 // aTerm.applySky(ftATermSq_l, vb, false, 0);
     281             :                 // tt=max(ftATermSq_l.get());
     282             :                 // ftATermSq_l.put(ftATermSq_l.get()/tt);
     283             : 
     284           0 :                 Int directionIndex=cs_l.findCoordinate(Coordinate::DIRECTION);
     285           0 :                 DirectionCoordinate dc=cs_l.directionCoordinate(directionIndex);
     286           0 :                 Vector<Double> cellSize;
     287           0 :                 cellSize = dc.increment();
     288             : 
     289             :                 //
     290             :                 // Now compute the PS x W-Term and apply the cached
     291             :                 // A-Term to build the full CF.
     292             :                 //
     293           0 :                 for (uInt iw=0;iw<wValues.nelements();iw++)     // All w-planes
     294             :                   {
     295           0 :                     if (!isDryRun)
     296             :                       log_l << " CF("
     297           0 :                             << "M:"<<muellerElements(imx)(imy) 
     298             :                             << ",C:" << inu 
     299           0 :                             << ",W:" << iw << "): ";
     300             :                     // {
     301             :                     //   CountedPtr<CFCell> thisCell=cfb.getCFCellPtr(freqValues(inu), wValues(iw), muellerElements(imx)(imy));
     302             :                     //   thisCell->conjFreq_p = conjFreq;
     303             :                     //   cerr << "ConjFreq: " << thisCell->conjFreq_p << " " << inu << " " << iw << " " << muellerElements(imx)(imy) << endl;
     304             :                     // }
     305             : 
     306           0 :                     Array<Complex> &cfWtBuf=(*(cfWtb.getCFCellPtr(freqValues(inu), wValues(iw), 
     307           0 :                                                                   muellerElements(imx)(imy))->storage_p));
     308           0 :                     Array<Complex> &cfBuf=(*(cfb.getCFCellPtr(freqValues(inu), wValues(iw), 
     309           0 :                                                               muellerElements(imx)(imy))->storage_p));
     310             :                     // IPosition cfWtBufShape= cfWtb.getCFCellPtr(freqValues(inu), wValues(iw), 
     311             :                     //                                         muellerElements(imx)(imy))->shape_p;
     312             :                     // IPosition cfBufShape=cfb.getCFCellPtr(freqValues(inu), wValues(iw), 
     313             :                     //                                    muellerElements(imx)(imy))->shape_p;
     314             :                     
     315           0 :                     cfWtBuf.resize(pbshp);
     316           0 :                     cfBuf.resize(pbshp);
     317             : 
     318           0 :                     const Vector<Double> sampling_l(2,sampling);
     319             :                     //              Double wval = wValues[iw];
     320           0 :                     Matrix<Complex> cfBufMat(cfBuf.nonDegenerate()), 
     321           0 :                       cfWtBufMat(cfWtBuf.nonDegenerate());
     322             :                     //
     323             :                     // Apply the Prolate Spheroidal and W-Term kernels
     324             :                     //
     325             : 
     326           0 :                     Vector<Double> s(2); s=sampling;
     327             :                     //              Int inner = cfBufMat.shape()(0)/aTerm.getOversampling();
     328             :                     //              Float inner = 2.0*aTerm.getOversampling()/cfBufMat.shape()(0);
     329             : 
     330             :                     //Timer tim;
     331             :                     //tim.mark();
     332           0 :                     if (psTerm.isNoOp() || isDryRun)
     333           0 :                       cfBufMat = cfWtBufMat = 1.0;
     334             :                     else
     335             :                       {
     336             :                         // psTerm.applySky(cfBufMat, False);   // Assign (psScale set in psTerm.init()
     337             :                         // psTerm.applySky(cfWtBufMat, False); // Assign
     338           0 :             psTerm.applySky(cfBufMat, s, cfBufMat.shape()(0)/s(0));   // Assign (psScale set in psTerm.init()
     339           0 :             psTerm.applySky(cfWtBufMat, s, cfWtBufMat.shape()(0)/s(0)); // Assign
     340           0 :                         cfWtBuf *= cfWtBuf;
     341             :                       }
     342             :                     //tim.show("PSTerm*2: ");
     343             : 
     344             :                     // WBAWP CODE BEGIN  -- make PS*PS for Weights
     345             :                     // psTerm.applySky(cfWtBufMat, true);  // Multiply
     346             :                     // WBAWP CODE END
     347             : 
     348             :                     // psTerm.applySky(cfBufMat, s, inner/2.0);//pbshp(0)/(os));
     349             :                     // psTerm.applySky(cfWtBufMat, s, inner/2.0);//pbshp(0)/(os));
     350             : 
     351             :                     // W-term is a unit-amplitude term in the image
     352             :                     // doimain.  No need to apply it to the
     353             :                     // wt-functions.
     354             : 
     355             :                     //tim.mark();
     356           0 :                     if (!isDryRun)
     357             :                       {
     358           0 :                         wTerm.applySky(cfBufMat, iw, cellSize, wScale, cfBuf.shape()(0));///4);
     359             :                       }
     360             :                     //tim.show("WTerm: ");
     361             :                     // wTerm.applySky(cfWtBufMat, iw, cellSize, wScale, cfWtBuf.shape()(0)/4);
     362             : 
     363           0 :                     IPosition PolnPlane(4,0,0,0,0),
     364           0 :                       pbShape(4, cfBuf.shape()(0), cfBuf.shape()(1), 1, 1);
     365             :                     //
     366             :                     // Make TempImages and copy the buffers with PS *
     367             :                     // WKernel applied (too bad that TempImages can't be
     368             :                     // made with existing buffers)
     369             :                     //
     370             :                     //-------------------------------------------------------------                 
     371           0 :                     TempImage<Complex> twoDPB_l(pbShape, cs_l);
     372           0 :                     TempImage<Complex> twoDPBSq_l(pbShape,cs_l);
     373             :                     //-------------------------------------------------------------                 
     374             :                     // WBAWP CODE BEGIN -- ftATermSq_l has conj. PolCS
     375           0 :                     cfWtBuf *= ftATerm_l.get()*conj(ftATermSq_l.get());
     376             :                       
     377             :                     //tim.mark();
     378             :                     //UUU cfWtBuf *= ftATerm_l.get();
     379           0 :                     cfBuf *= ftATerm_l.get();
     380             :                     //tim.show("W*A*2: ");
     381             :                     // WBAWP CODE END
     382             : 
     383             :                     
     384             : 
     385             :                     // cfWtBuf = sqrt(cfWtBuf);
     386             :                     // psTerm.applySky(cfWtBufMat,true);
     387             : 
     388             :                     //tim.mark();
     389           0 :                     twoDPB_l.putSlice(cfBuf, PolnPlane);
     390           0 :                     twoDPBSq_l.putSlice(cfWtBuf, PolnPlane);
     391             :                     //tim.show("putSlice:");
     392             :                     // WBAWP CODE BEGIN
     393             :                     //              twoDPB_l *= ftATerm_l;
     394             :                     // WBAWP CODE END
     395             : 
     396             :                     //              twoDPBSq_l *= ftATermSq_l;//*conj(ftATerm_l);
     397             : 
     398             :                     // To accumulate avgPB2, call this function. 
     399             :                     // PBSQWeight
     400           0 :                     Bool PBSQ = false;
     401           0 :                     if(PBSQ) makePBSq(twoDPBSq_l); 
     402             :                     
     403             : 
     404             :                     //
     405             :                     // Set the ref. freq. of the co-ordinate system to
     406             :                     // that set by ATerm::applySky().
     407             :                     //
     408             :                     //tim.mark();
     409           0 :                     CoordinateSystem cs=twoDPB_l.coordinates();
     410           0 :                     Int index= twoDPB_l.coordinates().findCoordinate(Coordinate::SPECTRAL);
     411           0 :                     SpectralCoordinate SpCS = twoDPB_l.coordinates().spectralCoordinate(index);
     412             :                     
     413           0 :                     Double cfRefFreq=SpCS.referenceValue()(0);
     414           0 :                     Vector<Double> refValue; refValue.resize(1); refValue(0)=cfRefFreq;
     415           0 :                     SpCS.setReferenceValue(refValue);
     416           0 :                     cs.replaceCoordinate(SpCS,index);
     417             :                     //tim.show("CSStuff:");
     418             :                     //
     419             :                     // Now FT the function and copy the data from
     420             :                     // TempImages back to the CFBuffer buffers
     421             :                     //
     422             :                     //tim.mark();
     423           0 :                     if (!isDryRun)
     424             :                       {
     425           0 :                         LatticeFFT::cfft2d(twoDPB_l);
     426           0 :                         LatticeFFT::cfft2d(twoDPBSq_l);
     427             :                       }
     428             :                     //tim.show("FFT*2:");
     429             :                     // Array<Complex> t0;
     430             :                     // twoDPBSq_l.get(t0); t0 = abs(t0);
     431             :                     // twoDPBSq_l.put(t0);
     432             : 
     433             :                     // {
     434             :                     //   ostringstream name;
     435             :                     //   name << "twoDPB.before" << iw << "_" << inu << "_" << muellerElements(imx)(imy) <<".im";
     436             :                     //   storeImg(name,twoDPB_l);
     437             :                     // }
     438             :                     // {
     439             :                     //   ostringstream name;
     440             :                     //   name << "twoDPBSq.before" << iw << "_" << inu << "_" << muellerElements(imx)(imy) <<".im";
     441             :                     //   storeImg(name,twoDPBSq_l);
     442             :                     // }
     443             :                     // exit(0);
     444             : 
     445             :                     //tim.mark();
     446             : 
     447           0 :                     IPosition shp(twoDPB_l.shape());
     448           0 :                     IPosition start(4, 0, 0, 0, 0), pbSlice(4, shp[0]-1, shp[1]-1,1/*polInUse*/, 1),
     449           0 :                       sliceLength(4,cfBuf.shape()[0]-1,cfBuf.shape()[1]-1,1,1);
     450             :                     
     451           0 :                     cfBuf(Slicer(start,sliceLength)).nonDegenerate()
     452           0 :                       =(twoDPB_l.getSlice(start, pbSlice, true));
     453             :                     
     454           0 :                     shp = twoDPBSq_l.shape();
     455           0 :                     IPosition pbSqSlice(4, shp[0]-1, shp[1]-1, 1, 1),
     456           0 :                       sqSliceLength(4,cfWtBuf.shape()(0)-1,cfWtBuf.shape()[1]-1,1,1);
     457             :                     
     458           0 :                     cfWtBuf(Slicer(start,sqSliceLength)).nonDegenerate()
     459           0 :                       =(twoDPBSq_l.getSlice(start, pbSqSlice, true));
     460             :                     //tim.show("Slicer*2:");
     461             :                     //
     462             :                     // Finally, resize the buffers, limited to the
     463             :                     // support size determined by the threshold
     464             :                     // suppled by the ATerm (done internally in
     465             :                     // resizeCF()).  Transform the co-ord. system to
     466             :                     // the FT domain set the co-ord. sys. and modified
     467             :                     // support sizes.
     468             :                     //
     469             :                     //tim.mark();
     470           0 :                     Int supportBuffer = (Int)(getOversampling(psTerm, wTerm, aTerm)*2.0);
     471           0 :                     if (!isDryRun)
     472             :                       {
     473           0 :                         if (iw==0) wtcpeak = max(cfWtBuf);
     474           0 :                         cfWtBuf /= wtcpeak;
     475             :                       }
     476             :                     //tim.show("Norm");
     477             : 
     478             :                     //tim.mark();
     479           0 :                     if (!isDryRun)
     480           0 :                       AWConvFunc::resizeCF(cfWtBuf, xSupportWt, ySupportWt, supportBuffer, samplingWt,0.0);
     481             :                     //log_l << "CF WT Support: " << xSupport << " (" << xSupportWt << ") " << "pixels" <<  LogIO::POST;
     482             :                     //tim.show("Resize:");
     483             : 
     484             :                     //tim.mark();
     485           0 :                     Vector<Double> ftRef(2);
     486           0 :                     ftRef(0)=cfWtBuf.shape()(0)/2.0;
     487           0 :                     ftRef(1)=cfWtBuf.shape()(1)/2.0;
     488           0 :                     CoordinateSystem ftCoords=cs_l;
     489           0 :                     SynthesisUtils::makeFTCoordSys(cs_l, cfWtBuf.shape()(0), ftRef, ftCoords);
     490           0 :                     CountedPtr<CFCell> cfCellPtr;
     491           0 :                     cfWtb.setParams(inu,iw,imx,imy,//muellerElements(imx)(imy),
     492           0 :                                     freqValues(inu), String(""), wValues(iw), muellerElements(imx)(imy),
     493             :                                     ftCoords, samplingWt, xSupportWt, ySupportWt,
     494           0 :                                     String(""), // Default ==> don't set it in the CFCell
     495           0 :                                     conjFreq, conjPol[0]);
     496           0 :                     cfCellPtr = cfWtb.getCFCellPtr(freqValues(inu), wValues(iw), 
     497           0 :                                                    muellerElements(imx)(imy));
     498           0 :                     cfCellPtr->pa_p=Quantity(vbPA,"rad");
     499           0 :                     cfCellPtr->telescopeName_p = aTerm.getTelescopeName();
     500           0 :                     cfCellPtr->isRotationallySymmetric_p = aTerm.isNoOp();
     501             : 
     502             :                     //cerr << "AWConvFunc: Telescope name = " << cfCellPtr->telescopeName_p << " " << aTerm.getTelescopeName() << endl;
     503             :                     //tim.show("CSStuff:");
     504             :                     // setUpCFSupport(cfBuf, xSupport, ySupport, sampling);
     505             :                     //              if (iw==0) 
     506             :                     //tim.mark();
     507             :                     //Int supportBuffer = (Int)(aTerm->getOversampling()*1.5);
     508             : 
     509           0 :                     if (!isDryRun)
     510             :                       {
     511           0 :                         cpeak = max(cfBuf);
     512           0 :                         cfBuf /= cpeak;
     513             :                       }
     514             :                     //tim.show("Peaknorm:");
     515             :                     // {
     516             :                     //   ostringstream name;
     517             :                     //   name << "twoDPB.after" << iw << "_" << inu << "_" << muellerElements(imx)(imy) << ".im";
     518             :                     //   storeImg(name,twoDPB_l);
     519             :                     //   // name << "twoDPBSq.after" << iw << "_" << inu << "_" << muellerElements(imx)(imy) << ".im";
     520             :                     //   // storeImg(name,twoDPBSq_l);
     521             :                     // }
     522             : 
     523           0 :                     if (!isDryRun)
     524           0 :                       AWConvFunc::resizeCF(cfBuf, xSupport, ySupport, supportBuffer, sampling,0.0);
     525             : 
     526           0 :                     if (!isDryRun)
     527           0 :                       log_l << "CF Support: " << xSupport << " (" << xSupportWt << ") " << "pixels" <<  LogIO::POST;
     528             : 
     529             :                     // cfb.getCFCellPtr(freqValues(inu), wValues(iw), muellerElement)->storage_p->assign(cfBuf);
     530             :                     // ftRef(0)=cfBuf.shape()(0)/2-1;
     531             :                     // ftRef(1)=cfBuf.shape()(1)/2-1;
     532           0 :                     ftRef(0)=cfBuf.shape()(0)/2.0;
     533           0 :                     ftRef(1)=cfBuf.shape()(1)/2.0;
     534             : 
     535             :                     //tim.mark();
     536           0 :                     cfNorm=cfWtNorm=1.0;
     537             :                     //if ((iw == 0) && (!isDryRun))
     538           0 :                     if (!isDryRun)
     539             :                       {
     540           0 :                         cfNorm=0; cfWtNorm=0;
     541           0 :                         cfNorm = AWConvFunc::cfArea(cfBufMat, xSupport, ySupport, sampling);
     542           0 :                         cfWtNorm = AWConvFunc::cfArea(cfWtBufMat, xSupportWt, ySupportWt, sampling);
     543             :                       }
     544             :                     //tim.show("Area*2:");
     545             : 
     546             :                     //tim.mark();
     547           0 :                     cfBuf /= cfNorm;
     548           0 :                     cfWtBuf /= cfWtNorm;
     549             :                     //tim.show("cfNorm*2:");
     550             : 
     551             :                     //tim.mark();
     552           0 :                     ftCoords=cs_l;
     553           0 :                     SynthesisUtils::makeFTCoordSys(cs_l, cfBuf.shape()(0), ftRef, ftCoords);
     554             : 
     555           0 :                     cfb.setParams(inu,iw,imx,imy,//muellerElements(imx)(imy),
     556           0 :                                   freqValues(inu), String(""), wValues(iw), muellerElements(imx)(imy),
     557             :                                   ftCoords, sampling, xSupport, ySupport,
     558           0 :                                   String(""), // Default ==> Don't set in the CFCell
     559           0 :                                   conjFreq, conjPol[0]);
     560           0 :                     cfCellPtr=cfb.getCFCellPtr(freqValues(inu), wValues(iw), 
     561           0 :                                                muellerElements(imx)(imy));
     562           0 :                     cfCellPtr->pa_p=Quantity(vbPA,"rad");
     563           0 :                     cfCellPtr->telescopeName_p = aTerm.getTelescopeName();
     564           0 :                     cfCellPtr->isRotationallySymmetric_p = aTerm.isNoOp();
     565             :                     //
     566             :                     // Now tha the CFs have been computed, cache its
     567             :                     // paramters in CFCell for quick access in tight
     568             :                     // loops (in the re-sampler, e.g.).
     569             :                     //
     570             : 
     571           0 :                     (cfWtb.getCFCellPtr(freqValues(inu), wValues(iw), 
     572           0 :                                         muellerElements(imx)(imy)))->initCache(isDryRun);
     573           0 :                     (cfb.getCFCellPtr(freqValues(inu), wValues(iw), 
     574           0 :                                       muellerElements(imx)(imy)))->initCache(isDryRun);
     575             : 
     576             :                     //tim.show("End*2:");
     577           0 :                   }
     578           0 :               }
     579             :           }
     580             :         }
     581           0 :   }
     582             :   //
     583             :   //----------------------------------------------------------------------
     584             :   //
     585           0 :   Complex AWConvFunc::cfArea(Matrix<Complex>& cf, 
     586             :                              const Int& xSupport, const Int& ySupport,
     587             :                              const Float& sampling)
     588             :   {
     589           0 :     LogIO log_l(LogOrigin("AWConvFunc","cfArea"));
     590           0 :     Complex cfNorm=0;
     591           0 :     Int origin=cf.shape()(0)/2;
     592           0 :     Float peak=0;
     593           0 :     IPosition ndx(4,0,0,0,0);
     594           0 :     IPosition peakPix(ndx);
     595           0 :     peakPix = 0;
     596           0 :     for(ndx(1)=0;ndx(1)<cf.shape()(1);ndx(1)++)
     597           0 :       for(ndx(0)=0;ndx(0)<cf.shape()(0);ndx(0)++)
     598           0 :         if (abs(cf(ndx)) > peak) {peakPix = ndx;peak=abs(cf(ndx));}
     599             :     //    origin = peakPix(0);
     600             : 
     601             :     //    int peakNIC=0;
     602             : 
     603           0 :     if (origin != peakPix(0))
     604             :       {
     605           0 :         log_l << "Peak not at the center " << origin << " " << cf(IPosition(4,origin,origin,0,0)) << " " << peakPix << " " << peak << LogIO::NORMAL1;
     606             :         //      peakNIC=1e7;
     607             :       }
     608           0 :     for (Int ix=-xSupport;ix<xSupport;ix++)
     609           0 :       for (int iy=-ySupport;iy<ySupport;iy++)
     610             :         {
     611             :           //cfNorm += Complex(real(cf(ix*(Int)sampling+origin, iy*(Int)sampling+origin)),0.0);
     612           0 :           cfNorm += (cf(ix*(Int)sampling+origin, iy*(Int)sampling+origin));
     613             :           // cerr << cfNorm << " " << ix << " " << iy << " " << ix*(Int)sampling+origin << " " << iy*(Int)sampling+origin
     614             :           //      << real(cf(ix*(Int)sampling+origin, iy*(Int)sampling+origin)) << endl;
     615             :         }
     616             :     //    cf /= cfNorm;
     617             : 
     618           0 :     return cfNorm;//+Complex(peakNIC,0.0);
     619           0 :   }
     620             :   //
     621             :   //----------------------------------------------------------------------
     622             :   //
     623           0 :   Vector<Double> AWConvFunc::makeWValList(const Double &dW, const Int &nW)
     624             :   {
     625           0 :     Vector<Double> wValues(nW);
     626             :     //    for (Int iw=0;iw<nW;iw++) wValues[iw]=iw*dW;
     627           0 :     wValues = 0.0;
     628           0 :     if (dW > 0.0)
     629           0 :       for (Int iw=0;iw<nW;iw++) wValues[iw]=iw*iw/dW;
     630           0 :     return wValues;
     631           0 :   }
     632             : 
     633             :   // This methods is depcricated.  Keeping it here since it *might*
     634             :   // have use sometime later and therefore want to push it on to SVN
     635             :   // before deleting it form the active version of this file.
     636           0 :   Matrix<Double> AWConvFunc::getFreqRangePerSpw(const VisBuffer& vb)
     637             :   {
     638             :     //
     639             :     // Find the total effective bandwidth
     640             :     //
     641           0 :     Cube<Double> fminmax;
     642           0 :     Double fMax=0, fMin=MAX_FREQ;
     643           0 :     ArrayColumn<Double> spwCol=vb.msColumns().spectralWindow().chanFreq();
     644           0 :     fminmax.resize(spwChanSelFlag_p.shape()(0),spwChanSelFlag_p.shape()(1),2);
     645           0 :     fminmax=0;
     646           0 :     for (uInt ims=0; ims<spwChanSelFlag_p.shape()(0); ims++)
     647           0 :       for(uInt ispw=0; ispw<spwChanSelFlag_p.shape()(1); ispw++)
     648             :         {
     649           0 :           fMax=0, fMin=MAX_FREQ;
     650           0 :           for(uInt ichan=0; ichan<spwChanSelFlag_p.shape()(2); ichan++)
     651             :             {
     652           0 :               if (spwChanSelFlag_p(ims,ispw,ichan)==1)
     653             :                 {
     654           0 :                   Slicer slicer(IPosition(1,ichan), IPosition(1,1));
     655           0 :                   Vector<Double> freq = spwCol(ispw)(slicer);
     656           0 :                   if (freq(0) < fMin) fMin = freq(0);
     657           0 :                   if (freq(0) > fMax) fMax = freq(0);
     658           0 :                 }
     659             :             }
     660           0 :           fminmax(ims,ispw,0)=fMin;
     661           0 :           fminmax(ims,ispw,1)=fMax;
     662             :         }
     663             : 
     664           0 :     Matrix<Double> freqRangePerSpw(fminmax.shape()(1),2);
     665           0 :     for (uInt j=0;j<fminmax.shape()(1);j++) // SPW
     666             :       {
     667           0 :         freqRangePerSpw(j,0)=0; 
     668           0 :         freqRangePerSpw(j,1)=MAX_FREQ; 
     669           0 :         for (uInt i=0;i<fminmax.shape()(0);i++) //MSes
     670             :           {
     671           0 :             if (freqRangePerSpw(j,0) < fminmax(i,j,0)) freqRangePerSpw(j,0)=fminmax(i,j,0);
     672           0 :             if (freqRangePerSpw(j,1) > fminmax(i,j,1)) freqRangePerSpw(j,1)=fminmax(i,j,1);
     673             :           }
     674             :       }
     675           0 :     for(uInt i=0;i<freqRangePerSpw.shape()(0);i++)
     676             :       {
     677           0 :         if (freqRangePerSpw(i,0) == MAX_FREQ) freqRangePerSpw(i,0)=-1;
     678           0 :         if (freqRangePerSpw(i,1) == 0) freqRangePerSpw(i,1)=-1;
     679             :       }
     680             : 
     681           0 :     return freqRangePerSpw;
     682           0 :   } 
     683             :   //
     684             :   //----------------------------------------------------------------------
     685             :   // Given the VB and the uv-grid, make a list of frequency values to
     686             :   // sample the frequency axis of the CFBuffer.  Typically, this will
     687             :   // be determined by the bandwidth-smearning limit.
     688             :   //
     689             :   // This limit is (deltaNu/Nu) * sqrt(l^2 + m^2) < ResolutionElement.
     690             :   // Translating max. distance from the phase center to field-of-view
     691             :   // of the supplied image, and converting Resolution Element to
     692             :   // 1/Cellsize, this expression translates to deltaNU<FMin/Nx (!)
     693           0 :   Vector<Double> AWConvFunc::makeFreqValList(Double &dNU,
     694             :                                              const VisBuffer& vb, 
     695             :                                              const ImageInterface<Complex>& uvGrid,
     696             :                                              Vector<String>& bandNames)
     697             :   {
     698             :     (void)uvGrid; (void)dNU; (void)vb;
     699           0 :     Vector<Double> fValues;
     700           0 :     if (wbAWP_p==false)
     701             :       {
     702             :         // Return the sky-image ref. freq.
     703           0 :         fValues.resize(1);
     704           0 :         fValues[0]=imRefFreq_p;
     705             : 
     706             :         // // Return the max. freq. from the list of selected SPWs
     707             :         // fValues.resize(1);
     708             :         // Double maxFreq=0.0;
     709             :         // for (Int i=0;i<spwFreqSelection_p.shape()(0);i++)
     710             :         //   if (spwFreqSelection_p(i,2) > maxFreq) maxFreq=spwFreqSelection_p(i,2);
     711             :         // fValues[0]=maxFreq;
     712             :       }
     713             :     else
     714             :       {
     715             :         Int nSpw;
     716             : 
     717             :         // USEFUL DEBUG MESSAGE
     718             :         //cerr << "##### Min. Max. Freq. per Spw: " << spwFreqSelection_p << " " << spwFreqSelection_p.shape() <<endl;
     719             : 
     720           0 :         nSpw = spwFreqSelection_p.shape()(0);
     721           0 :         fValues.resize(nSpw);
     722           0 :         bandNames.resize(nSpw);
     723             :         //      dNU = (spwFreqSelection_p(0,1) - spwFreqSelection_p(0,2));
     724           0 :         ScalarColumn<String> spwNames=vb.msColumns().spectralWindow().name();
     725           0 :         for(Int i=0;i<nSpw;i++) 
     726             :           {
     727           0 :             int s=spwFreqSelection_p(i,0);
     728           0 :             cerr << "Spw"<<s<<": " << spwNames.getColumn()[s] << endl;
     729             :             
     730           0 :             bandNames(i)=spwNames.getColumn()[s];
     731           0 :             fValues(i)=spwFreqSelection_p(i,2);
     732             :             // Int j=0;
     733             :             // while (j*dNU+spwFreqSelection_p(i,1) <= spwFreqSelection_p(i,2))
     734             :             //   {
     735             :             //     fValues.resize(j+1,true); 
     736             :             //     //   fValues(j)=spwFreqSelection_p(i,2); // Pick up the max. freq. for each selected SPW
     737             :             //     fValues(j)=j*dNU+spwFreqSelection_p(i,1);
     738             :             //     j=fValues.nelements();
     739             :             //   }
     740             :           }
     741             :         //    cerr << "Max. freq. per SPW = " << fValues << endl;
     742           0 :       }
     743           0 :     return fValues;
     744           0 :   }
     745             :   //
     746             :   //----------------------------------------------------------------------
     747             :   //
     748           0 :   void AWConvFunc::makeConvFunction(const ImageInterface<Complex>& image,
     749             :                                     const VisBuffer& vb,
     750             :                                     const Int wConvSize,
     751             :                                     const CountedPtr<PolOuterProduct>& pop,
     752             :                                     const Float pa,
     753             :                                     const Float dpa,
     754             :                                     const Vector<Double>& uvScale, const Vector<Double>& /*uvOffset*/,
     755             :                                     const Matrix<Double>& ,//vbFreqSelection,
     756             :                                     CFStore2& cfs2,
     757             :                                     CFStore2& cfwts2,
     758             :                                     Bool fillCF)
     759             :   {
     760           0 :     LogIO log_l(LogOrigin("AWConvFunc", "makeConvFunction[R&D]"));
     761             :     Int convSize, convSampling, polInUse;
     762           0 :     Double wScale=0.0; Int bandID_l=-1;
     763           0 :     Array<Complex> convFunc_l, convWeights_l;
     764           0 :     Double cfRefFreq=-1, freqScale=1e8;
     765           0 :     Quantity paQuant(pa,"rad");
     766             : 
     767             :     
     768           0 :     Int nx=image.shape()(0);//, ny=image.shape()(1);
     769           0 :     if (bandID_l == -1) bandID_l=getVisParams(vb,image.coordinates());
     770             :     
     771             :     log_l << "Making a new convolution function for PA="
     772           0 :           << pa*(180/C::pi) << "deg"
     773           0 :           << " for field ID " << vb.fieldId();
     774             :     // log_l << "TimeStamps(0-10) ";
     775             :     // for (Int i=0;i<10;i++) 
     776             :     //   //log_l << MVTime(vb.time()(i)).string(MVTime::TIME) << " ";
     777             :     //   log_l << vb.time()(i)/1e8 << " ";
     778             :     // log_l << LogIO::NORMAL << LogIO::POST;
     779             :     
     780           0 :     if(wConvSize>0) 
     781             :       {
     782           0 :         log_l << "Using " << wConvSize << " planes for W-projection" << LogIO::POST;
     783             :         Double maxUVW;
     784           0 :         maxUVW=0.25/abs(image.coordinates().increment()(0));
     785             :         log_l << "Estimating maximum possible W = " << maxUVW
     786           0 :               << " (wavelengths)" << LogIO::POST;
     787             :         
     788           0 :         Double invLambdaC=vb.frequency()(0)/C::c;
     789           0 :         Double invMinL = vb.frequency()((vb.frequency().nelements())-1)/C::c;
     790             :         log_l << "wavelength range = " << 1.0/invLambdaC << " (m) to " 
     791           0 :               << 1.0/invMinL << " (m)" << LogIO::POST;
     792           0 :         if (wConvSize > 1)
     793             :           {
     794           0 :             wScale=Float((wConvSize-1)*(wConvSize-1))/maxUVW;
     795             :             log_l << "Scaling in W (at maximum W) = " << 1.0/wScale
     796           0 :                   << " wavelengths per pixel" << LogIO::POST;
     797             :           }
     798             :       }
     799             :     //  
     800             :     // Get the coordinate system
     801             :     //
     802           0 :     CoordinateSystem coords(image.coordinates());
     803             :     //
     804             :     // Set up the convolution function. 
     805             :     //
     806             :     //convSampling=aTerm_p->getOversampling();
     807           0 :     convSampling=getOversampling(*psTerm_p, *wTerm_p, *aTerm_p);
     808           0 :     convSize=aTerm_p->getConvSize();
     809             : //    cout<<"Conv Sampling listed in aipsrc is : "<<convSampling<<endl;
     810             : //    cout<<"Conv Size is : "<<convSize<<endl;
     811             :     //
     812             :     // Make a two dimensional image to calculate auto-correlation of
     813             :     // the ideal illumination pattern. We want this on a fine grid in
     814             :     // the UV plane
     815             :     //
     816           0 :     Int index= coords.findCoordinate(Coordinate::SPECTRAL);
     817           0 :     SpectralCoordinate spCS = coords.spectralCoordinate(index);
     818           0 :     imRefFreq_p=spCS.referenceValue()(0);
     819             : 
     820           0 :     index=coords.findCoordinate(Coordinate::DIRECTION);
     821           0 :     AlwaysAssert(index>=0, AipsError);
     822           0 :     DirectionCoordinate dc=coords.directionCoordinate(index);
     823           0 :     Vector<Double> sampling;
     824           0 :     sampling = dc.increment();
     825             : //    cout<<"The image sampling is set to :"<<sampling<<endl; 
     826           0 :     sampling*=Double(convSampling);
     827           0 :     sampling*=Double(nx)/Double(convSize);
     828             : //    cout<<"The resampled increment is :"<<sampling<<endl;
     829           0 :     dc.setIncrement(sampling);
     830             :     
     831           0 :     Vector<Double> unitVec(2);
     832           0 :     unitVec=convSize/2;
     833           0 :     dc.setReferencePixel(unitVec);
     834             :     
     835             :     // Set the reference value to that of the image
     836           0 :     coords.replaceCoordinate(dc, index);
     837             :     //
     838             :     // Make an image with circular polarization axis.  Return the
     839             :     // no. of vis. poln. planes that will be used in making the user
     840             :     // defined Stokes image.
     841             :     //
     842           0 :     polInUse=aTerm_p->makePBPolnCoords(vb, convSize, convSampling, 
     843             :                                        image.coordinates(),nx,nx,
     844             :                                        coords);//,feedStokes_l);
     845             :     //------------------------------------------------------------------
     846             :     // Make the sky Stokes PB.  This will be used in the gridding
     847             :     // correction
     848             :     //------------------------------------------------------------------
     849           0 :     IPosition pbShape(4, convSize, convSize, polInUse, 1);
     850           0 :     TempImage<Complex> twoDPB(pbShape, coords);
     851           0 :     IPosition pbSqShp(pbShape);
     852             :     
     853           0 :     unitVec=pbSqShp[0]/2;
     854           0 :     dc.setReferencePixel(unitVec);
     855           0 :     coords.replaceCoordinate(dc, index);
     856             :     
     857           0 :     TempImage<Complex> twoDPBSq(pbSqShp,coords);
     858           0 :     twoDPB.set(Complex(1.0,0.0));
     859           0 :     twoDPBSq.set(Complex(1.0,0.0));
     860             :     //
     861             :     // Accumulate the various terms that constitute the gridding
     862             :     // convolution function.
     863             :     //
     864             :     //------------------------------------------------------------------
     865             :     //    Int inner=convSize/convSampling;
     866             :     //    CFStore2 cfs2_p, cfwts2_p;
     867           0 :     CountedPtr<CFBuffer> cfb_p, cfwtb_p;
     868             :     // cfs2.rememberATerm(aTerm_p);
     869             :     // cfwts2.rememberATerm(aTerm_p);
     870             :     
     871           0 :     Vector<Quantity> paList(1); paList[0]=paQuant;
     872             :     //
     873             :     // Determine the "Mueller Matrix" (called PolOuterProduct here for
     874             :     // a better name) elements to use based on the sky-Stokes planes
     875             :     // requested.  PolOuterProduct::makePolMap() makes a
     876             :     // Matrix<Int>.  The elements of this matrix has the index of the
     877             :     // convolution function for the pol. product.  Unused elements are
     878             :     // set to -1.  The physical definition of the PolOuterProduct
     879             :     // elements are as defined in Eq. 4 in A&A 487, 419-429 (2008)
     880             :     // (http://arxiv.org/abs/0805.0834).
     881             :     //
     882             :     // First detemine the list of Stokes requested.  Then convert the
     883             :     // requested Stokes to the appropriate Pol cross-product.  When
     884             :     // the off-diagonal elements of the outer-product are significant,
     885             :     // this will lead to more than one outer-product element per
     886             :     // Stokes.  
     887             :     //
     888             :     // The code below still assume a diagonally dominant
     889             :     // outer-product.  This probably OK for antena arrays. After the
     890             :     // debugging phase is over, the
     891             :     // Vector<PolOuterProduct::CrossCircular> should become
     892             :     // Matrix<PolOuterProduct> and PolOuterProduct should be
     893             :     // "templated" to be of type Circular or Linear.
     894             :     //
     895           0 :     StokesCoordinate skyStokesCo=coords.stokesCoordinate(coords.findCoordinate(Coordinate::STOKES));
     896           0 :     Vector<Int> skyStokes=skyStokesCo.stokes();
     897             :     //Vector<PolOuterProduct::CrossPolCircular> pp(skyStokes.nelements());
     898           0 :     PolMapType polMap, polIndexMap, conjPolMap, conjPolIndexMap;
     899           0 :     polMap = pop->getPolMat();
     900           0 :     polIndexMap = pop->getPol2CFMat();
     901           0 :     conjPolMap = pop->getConjPolMat();
     902           0 :     conjPolIndexMap = pop->getConjPol2CFMat();
     903             : 
     904             :     //cerr << "AWCF: " << polMap << endl << polIndexMap << endl << conjPolMap << endl << conjPolIndexMap << endl;
     905             :     
     906             :     // for(uInt ip=0;ip<pp.nelements();ip++)
     907             :     //  pp(ip)=translateStokesToCrossPol(skyStokes(ip));
     908             :     
     909             :     // PolOuterProduct pOP; pOP.makePolMap(pp);
     910             :     // const Matrix<Int> muellerMatrix=pOP.getPolMap();
     911             :     
     912           0 :     Vector<Double> wValues    = makeWValList(wScale, wConvSize);
     913           0 :     Vector<String> bandNames;
     914           0 :     Vector<Double> freqValues = makeFreqValList(freqScale,vb,image,bandNames);
     915           0 :     log_l << "Making " << wValues.nelements() << " w plane(s). " << LogIO::POST;
     916           0 :     log_l << "Making " << freqValues.nelements() << " frequency plane(s)." << LogIO::POST;
     917             :     //
     918             :     // If w-term is unity, we can scale the A-term with frequency.  So
     919             :     // compute it only for the highest frequency involved.
     920             :     //
     921             :     //log_l << "Disabled scaling of CFs" << LogIO::WARN << LogIO::POST;
     922             :     // if (wConvSize <= 1)
     923             :     //   {
     924             :     //  Double rFreq = max(freqValues);
     925             :     //  if (freqValues.nelements() > 1)
     926             :     //    freqScale=2*(rFreq-min(freqValues));
     927             :     //  freqValues.resize(1);freqValues(0)=rFreq;
     928             :     //   }
     929             :     log_l << "CFB Freq. axis [N, Min, Max, Incr. (GHz)]: " 
     930             :           << freqValues.nelements()  << " "
     931           0 :           << min(freqValues)/1e9 << " " 
     932           0 :           << max(freqValues)/1e9 << " "
     933             :           << freqScale/1e9 
     934           0 :           << LogIO::POST;
     935             :     //
     936             :     // Re-size the CFStore object.  It holds CFBuffers index by PA and
     937             :     // list of unique baselines (all possible pairs of unique antenna
     938             :     // types).
     939             :     //
     940           0 :     Matrix<Int> uniqueBaselineTypeList=makeBaselineList(aTerm_p->getAntTypeList());
     941             :     //Quantity dPA(360.0,"deg");
     942           0 :     Quantity dPA(dpa,"rad");
     943           0 :     Int totalCFs=uniqueBaselineTypeList.shape().product()*wConvSize*freqValues.nelements()*polMap.shape().product();
     944           0 :     ProgressMeter pm(1.0, Double(totalCFs), "makeCF", "","","",true);
     945           0 :     int cfDone=0;
     946           0 :     for(Int ib=0;ib<uniqueBaselineTypeList.shape()(0);ib++)
     947             :       {
     948           0 :         Vector<Int> pos;
     949           0 :         pos=cfs2.resize(paQuant, dPA, uniqueBaselineTypeList(ib,0), uniqueBaselineTypeList(ib,1)); 
     950           0 :         pos=cfwts2.resize(paQuant, dPA, uniqueBaselineTypeList(ib,0), uniqueBaselineTypeList(ib,1)); 
     951             :         //
     952             :         // Re-size the CFBuffer object.  It holds the 2D convolution
     953             :         // functions index by (FreqValue, WValue, MuellerElement).
     954             :         //    
     955           0 :         cfb_p=cfs2.getCFBuffer(paQuant, dPA, uniqueBaselineTypeList(ib,0),uniqueBaselineTypeList(ib,1));
     956           0 :         cfwtb_p=cfwts2.getCFBuffer(paQuant, dPA, uniqueBaselineTypeList(ib,0),uniqueBaselineTypeList(ib,1));
     957           0 :         cfb_p->setPointingOffset(pixFieldGrad_p);
     958             :         // cfb_p->resize(wValues,freqValues,muellerMatrix);
     959             :         // cfwtb_p->resize(wValues,freqValues,muellerMatrix);
     960             :         
     961           0 :         cfb_p->resize(wScale, freqScale, wValues,freqValues,polMap, polIndexMap,conjPolMap, conjPolIndexMap);
     962           0 :         cfwtb_p->resize(wScale, freqScale, wValues,freqValues,polMap, polIndexMap,conjPolMap, conjPolIndexMap);
     963             :         
     964           0 :         IPosition start(4, 0, 0, 0, 0);
     965           0 :         IPosition pbSlice(4, convSize, convSize, 1, 1);
     966             :         
     967           0 :         Matrix<Complex> screen(convSize, convSize);
     968             :         // WTerm wterm_l;
     969             :         // PSTerm psTerm_l;
     970             : 
     971             :         //Initiate construction of the "ConvolveGridder" object inside
     972             :         //PSTerm.  This is, for historical reasons, used to access the
     973             :         //"standard" Prolate Spheroidal function implementaion.  This
     974             :         //however should be replaced with a simpler access, direct
     975             :         //access the PS function implementation (in Utils.h
     976             :         //SynthesisUtils::libreSpheroidal() - but this needs more
     977             :         //testing).
     978           0 :         Int inner=convSize/(convSampling);
     979             :         // Float psScale= (image.coordinates().increment()(0)*nx) /
     980             :         //   (coords.increment()(0)*screen.shape()(0));
     981             : 
     982           0 :         Float psScale = (2*coords.increment()(0))/(nx*image.coordinates().increment()(0)),
     983           0 :           innerQuaterFraction=1.0;
     984             :         // psScale when using SynthesisUtils::libreSpheroidal() is
     985             :         // 2.0/nSupport.  nSupport is in pixels and the 2.0 is due to
     986             :         // the center being at Nx/2.  Here the nSupport is determined
     987             : 
     988             :         // by the sky-image and is equal to convSize/convSampling.
     989           0 :         psScale = 2.0/(innerQuaterFraction*convSize/convSampling);// nx*image.coordinates().increment()(0)*convSampling/2;
     990           0 :         Vector<Double> uvOffset_cf(3,0); uvOffset_cf(0)=uvOffset_cf(2)=convSize/2; 
     991           0 :         psTerm_p->init(IPosition(2,inner,inner), uvScale, uvOffset_cf,psScale);
     992             : 
     993           0 :         MuellerElementType muellerElement(0,0);
     994           0 :         CoordinateSystem cfb_cs=coords;
     995             :         //
     996             :         // Set up the Mueller matrix, the co-ordinate system, freq, and
     997             :         // wvalues in the CFBuffer for the currenct CFStore object.
     998             :         //
     999             :         //cerr<<"Mueller matrix of row length:"<<polMap.nelements()<<" at the start of the CFBuf Loop" <<endl;
    1000           0 :         for (Int iw=0;iw<wConvSize;iw++) 
    1001             :           {
    1002           0 :             for(uInt inu=0;inu<freqValues.nelements(); inu++)
    1003             :               {
    1004           0 :                 Int npol=0;
    1005           0 :                 for (uInt ipolx=0;ipolx<polMap.nelements();ipolx++)
    1006             :                   {
    1007           0 :                     npol=0;
    1008           0 :                   for (uInt ipoly=0;ipoly<polMap(ipolx).nelements();ipoly++)
    1009             :                     {
    1010             :                       // Now make a CS with a single appropriate
    1011             :                       // polarization axis per Mueller element
    1012           0 :                       Vector<Int> whichStokes(1,skyStokes(npol++));
    1013           0 :                       Int sIndex=cfb_cs.findCoordinate(Coordinate::STOKES);
    1014           0 :                       StokesCoordinate stokesCS=cfb_cs.stokesCoordinate(sIndex);
    1015           0 :                       Int fIndex=coords.findCoordinate(Coordinate::SPECTRAL);
    1016           0 :                       SpectralCoordinate spCS = coords.spectralCoordinate(fIndex);
    1017           0 :                       Vector<Double> refValue, incr; 
    1018           0 :                       refValue = spCS.referenceValue();
    1019           0 :                       incr = spCS.increment();
    1020           0 :                       cfRefFreq=freqValues(inu);
    1021           0 :                       refValue=cfRefFreq;
    1022           0 :                       spCS.setReferenceValue(refValue);
    1023             : 
    1024           0 :                       stokesCS.setStokes(whichStokes);
    1025           0 :                       cfb_cs.replaceCoordinate(stokesCS,sIndex);
    1026           0 :                       cfb_cs.replaceCoordinate(spCS,fIndex);
    1027             :                       //
    1028             :                       // Set the various axis-parameters for the CFBuffer.
    1029             :                       //
    1030           0 :                       Float s=convSampling;
    1031             :                       // cfb_p->setParams(convSize,convSize,cfb_cs,s,
    1032             :                       //                       convSize, convSize, 
    1033             :                       //                       freqValues(inu), wValues(iw), polMap(ipolx)(ipoly));
    1034             :                       // cfwtb_p->setParams(convSize,convSize,cfb_cs,s,
    1035             :                       //                         convSize, convSize, 
    1036             :                       //                         freqValues(inu), wValues(iw), polMap(ipolx)(ipoly));
    1037           0 :                       cfb_p->setParams(inu, iw, ipolx,ipoly,//polMap(ipolx)(ipoly),
    1038           0 :                                        freqValues(inu), bandNames(inu), wValues(iw), polMap(ipolx)(ipoly),
    1039             :                                        cfb_cs, s, convSize, convSize);
    1040           0 :                       cfwtb_p->setParams(inu, iw, ipolx,ipoly,//polMap(ipolx)(ipoly),
    1041           0 :                                          freqValues(inu), bandNames(inu), wValues(iw), polMap(ipolx)(ipoly),
    1042             :                                          cfb_cs, s, convSize, convSize);
    1043           0 :                       pm.update((Double)cfDone++);
    1044           0 :                     }
    1045             :               }
    1046             :                 } // End of loop over Mueller elements.
    1047             :           } // End of loop over w
    1048             :         //
    1049             :         // By this point, the all the 4 axis (Time/PA, Freq, Pol,
    1050             :         // Baseline) of the CFBuffer objects have been setup.  The CFs
    1051             :         // will now be filled using the supplied PS-, W- ad A-term objects.
    1052             :         //
    1053           0 :         if (fillCF) log_l << "Making CFs for baseline type " << ib << LogIO::POST;
    1054           0 :         else        log_l << "Making empty CFs for baseline type " << ib << LogIO::POST;
    1055             :         {
    1056           0 :           Double vbPA = getPA(vb), freqHi;
    1057             : 
    1058             :           
    1059           0 :           Vector<Double> chanFreq = vb.frequency();
    1060           0 :           index = image.coordinates().findCoordinate(Coordinate::SPECTRAL);
    1061           0 :           SpectralCoordinate SpC = cfb_cs.spectralCoordinate(index);
    1062           0 :           Vector<Double> refVal = SpC.referenceValue();
    1063             :         
    1064           0 :           freqHi = refVal[0];
    1065           0 :           fillConvFuncBuffer(*cfb_p, *cfwtb_p, convSize, convSize, freqValues, wValues, wScale,
    1066             :                              vbPA, freqHi,
    1067             :                              polMap, polIndexMap, vb, psScale,
    1068           0 :                              *psTerm_p, *wTerm_p, *aTerm_p, !fillCF);
    1069           0 :         }
    1070             :         // cfb_p->show(NULL,cerr);
    1071             :         //cfb_p->makePersistent("test.cf");
    1072             :         // cfwtb_p->makePersistent("test.wtcf");
    1073             :         
    1074           0 :       } // End of loop over baselines
    1075             :     
    1076           0 :     index=coords.findCoordinate(Coordinate::SPECTRAL);
    1077           0 :     spCS = coords.spectralCoordinate(index);
    1078           0 :     Vector<Double> refValue; refValue.resize(1);refValue(0)=cfRefFreq;
    1079           0 :     spCS.setReferenceValue(refValue);
    1080           0 :     coords.replaceCoordinate(spCS,index);
    1081             :     
    1082             :     // cfs.coordSys=coords;         cfwts.coordSys=coords; 
    1083             :     // cfs.pa=paQuant;   cfwts.pa=paQuant;
    1084             :     
    1085             :     //    aTerm_p->makeConvFunction(image,vb,wConvSize,pa,cfs,cfwts);
    1086           0 :   }
    1087             :   //
    1088             :   //----------------------------------------------------------------------
    1089             :   //
    1090           0 :   Bool AWConvFunc::setUpCFSupport(Array<Complex>& cfVals, Int& xSupport, Int& ySupport,
    1091             :                                   const Float& sampling, const Complex& peak)
    1092             :   {
    1093           0 :     LogIO log_l(LogOrigin("AWConvFunc", "setUpCFSupport[R&D]"));
    1094             :     //
    1095             :     // Find the convolution function support size.  No assumption
    1096             :     // about the symmetry of the conv. func. can be made (except that
    1097             :     // they are same for all poln. planes).
    1098             :     //
    1099           0 :     xSupport = ySupport = -1;
    1100           0 :     Int convFuncOrigin=cfVals.shape()[0]/2, R; 
    1101           0 :     Bool found=false;
    1102             :     Float threshold;
    1103             :     // Threshold as a fraction of the peak (presumed to be the center pixel).
    1104           0 :     if (abs(peak) != 0) threshold = real(abs(peak));
    1105             :     else 
    1106           0 :       threshold   = real(abs(cfVals(IPosition(4,convFuncOrigin,convFuncOrigin,0,0))));
    1107             : 
    1108             :     //threshold *= aTerm_p->getSupportThreshold();
    1109           0 :     threshold *= 1e-3;
    1110             :     //    threshold *=  0.1;
    1111             :     // if (aTerm_p->isNoOp()) 
    1112             :     //   threshold *= 1e-3; // This is the threshold used in "standard" FTMchines
    1113             :     // else
    1114             : 
    1115             :     //
    1116             :     // Find the support size of the conv. function in pixels
    1117             :     //
    1118             :     // Timer tim;
    1119             :     // tim.mark();
    1120           0 :     if ((found = AWConvFunc::awFindSupport(cfVals,threshold,convFuncOrigin,R)))
    1121           0 :       xSupport=ySupport=Int(0.5+Float(R)/sampling)+1;
    1122             :     // tim.show("findSupport:");
    1123             : 
    1124             :     // If the support size overflows, give a warning and set the
    1125             :     // support size to be convFuncSize/2 + the max. possible offset in
    1126             :     // the oversamplied grid.  The max. possible offset would 0.5
    1127             :     // pixels on the sky, which would be sampling/2.0.
    1128             :     //
    1129             :     // If the extra buffer (max(offset)) is not included, the problem
    1130             :     // will show up when gridding the data or weights.  It will not
    1131             :     // show up when making the avgPB since the gridding for that is
    1132             :     // always centered on the center of the image.
    1133           0 :     if ((xSupport*sampling + int(sampling/2.0+0.5)) > convFuncOrigin)
    1134             :       {
    1135             :         log_l << "Convolution function support size > N/2.  Limiting it to N/2 "
    1136             :               << "(threshold = " << threshold << ")."
    1137           0 :               << LogIO::WARN;
    1138           0 :         xSupport = ySupport = (Int)(convFuncOrigin/sampling-1);
    1139             :       }
    1140             : 
    1141           0 :     if(xSupport<1) 
    1142             :       log_l << "Convolution function is misbehaved - support seems to be zero"
    1143           0 :             << LogIO::EXCEPTION;
    1144           0 :     return found;
    1145           0 :   }
    1146             :   //
    1147             :   //----------------------------------------------------------------------
    1148             :   //
    1149           0 :   Bool AWConvFunc::resizeCF(Array<Complex>& cfVals, Int& xSupport, Int& ySupport,
    1150             :                             const Int& supportBuffer, const Float& sampling, const Complex& peak)
    1151             :   {
    1152           0 :     LogIO log_l(LogOrigin("AWConvFunc", "resizeCF[R&D]"));
    1153           0 :     Int ConvFuncOrigin=cfVals.shape()[0]/2;  // Conv. Func. is half that size of convSize
    1154             :     
    1155           0 :     Bool found = setUpCFSupport(cfVals, xSupport, ySupport, sampling,peak);
    1156             : 
    1157             :     //Int supportBuffer = (Int)(aTerm_p->getOversampling()*1.5);
    1158           0 :     Int bot=(Int)(ConvFuncOrigin-sampling*xSupport-supportBuffer),//-convSampling/2, 
    1159           0 :       top=(Int)(ConvFuncOrigin+sampling*xSupport+supportBuffer);//+convSampling/2;
    1160             :     //    bot *= 2; top *= 2;
    1161           0 :     bot = max(0,bot);
    1162           0 :     top = min(top, cfVals.shape()(0)-1);
    1163             :     
    1164           0 :     Array<Complex> tmp;
    1165           0 :     IPosition blc(4,bot,bot,0,0), trc(4,top,top,0,0);
    1166             :     //
    1167             :     // Cut out the conv. func., copy in a temp. array, resize the
    1168             :     // CFStore.data, and copy the cutout version to CFStore.data.
    1169             :     //
    1170           0 :     tmp = cfVals(blc,trc);
    1171           0 :     cfVals.resize(tmp.shape());
    1172           0 :     cfVals = tmp; 
    1173           0 :     return found;
    1174           0 :   }
    1175             :   //
    1176             :   //----------------------------------------------------------------------
    1177             :   // A global method for use in OMP'ed findSupport() below
    1178             :   //
    1179           0 :   void archPeak(const Float& threshold, const Int& origin, const Block<Int>& cfShape, const Complex* cfValsPtr, 
    1180             :                 const Int& nCFS, const Int& PixInc,const Int& th, const Int& R, Block<Int>& maxR)
    1181             :   {
    1182           0 :     Block<Complex> vals;
    1183           0 :     Block<Int> ndx(nCFS); ndx=0;
    1184             :     Int NSteps;
    1185             :     //Check every PixInc pixel along a circle of radius R
    1186           0 :     NSteps = 90*R/PixInc; 
    1187           0 :     vals.resize((Int)(NSteps+0.5));
    1188           0 :     uInt valsNelements=vals.nelements();
    1189           0 :     vals=0;
    1190             : 
    1191           0 :     for(Int pix=0;pix<NSteps;pix++)
    1192             :       {
    1193           0 :         ndx[0]=(int)(origin + R*sin(2.0*M_PI*pix*PixInc/R));
    1194           0 :         ndx[1]=(int)(origin + R*cos(2.0*M_PI*pix*PixInc/R));
    1195             :         
    1196           0 :         if ((ndx[0] < cfShape[0]) && (ndx[1] < cfShape[1]))
    1197             :           //vals[pix]=cfVals(ndx);
    1198           0 :           vals[pix]=cfValsPtr[ndx[0]+ndx[1]*cfShape[1]+ndx[2]*cfShape[2]+ndx[3]*cfShape[3]];
    1199             :       }
    1200             : 
    1201           0 :     maxR[th]=-R;
    1202           0 :     for (uInt i=0;i<valsNelements;i++)
    1203           0 :       if (fabs(vals[i]) > threshold)
    1204             :         {
    1205           0 :           maxR[th]=R;
    1206           0 :           break;
    1207             :         }
    1208             :     //          th++;
    1209           0 :   }
    1210             :   //
    1211             :   //----------------------------------------------------------------------
    1212             :   //
    1213           0 :   Bool AWConvFunc::findSupport(Array<Complex>& cfVals, Float& threshold, 
    1214             :                                Int& origin, Int& radius)
    1215             :   {
    1216           0 :     return awFindSupport(cfVals, threshold, origin, radius);
    1217             :   }
    1218           0 :   Bool AWConvFunc::awFindSupport(Array<Complex>& cfVals, Float& threshold, 
    1219             :                                Int& origin, Int& radius)
    1220             :   {
    1221           0 :     LogIO log_l(LogOrigin("AWConvFunc", "findSupport[R&D]"));
    1222             : 
    1223           0 :     Int nCFS=cfVals.shape().nelements(),
    1224           0 :       PixInc=1, R0, R1, R, convSize;
    1225           0 :     Block<Int> cfShape(nCFS);
    1226           0 :     Bool found=false;
    1227             :     Complex *cfValsPtr;
    1228             :     Bool dummy;
    1229           0 :     uInt Nth=1, threadID=0;
    1230             : 
    1231           0 :     for (Int i=0;i<nCFS;i++)
    1232           0 :         cfShape[i]=cfVals.shape()[i];
    1233           0 :     convSize = cfShape[0];
    1234             : 
    1235             : #ifdef _OPENMP
    1236           0 :     Nth = max(omp_get_max_threads()-2,1);
    1237             : #endif
    1238             :     
    1239           0 :     Block<Int> maxR(Nth);
    1240             : 
    1241           0 :     cfValsPtr = cfVals.getStorage(dummy);
    1242             : 
    1243           0 :     R1 = convSize/2-2;
    1244             : 
    1245           0 :     while (R1 > 1)
    1246             :       {
    1247           0 :             R0 = R1; R1 -= Nth;
    1248             : 
    1249             : //#pragma omp parallel default(none) firstprivate(R0,R1)  private(R,threadID) shared(origin,threshold,PixInc,maxR,cfShape,nCFS,cfValsPtr) num_threads(Nth)
    1250           0 : #pragma omp parallel firstprivate(R0,R1)  private(R,threadID) shared(PixInc,maxR,cfShape,nCFS,cfValsPtr) num_threads(Nth)
    1251             :             { 
    1252             : #pragma omp for
    1253             :               for(R=R0;R>R1;R--)
    1254             :                 {
    1255             : #ifdef _OPENMP
    1256             :                   threadID=omp_get_thread_num();
    1257             : #endif
    1258             :                   archPeak(threshold, origin, cfShape, cfValsPtr, nCFS, PixInc, threadID, R, maxR);
    1259             :                 }
    1260             :             }///omp         
    1261             : 
    1262           0 :             for (uInt th=0;th<Nth;th++)
    1263           0 :               if (maxR[th] > 0)
    1264           0 :                 {found=true; radius=maxR[th]; return found;}
    1265             :       }
    1266           0 :     return found;
    1267           0 :   }
    1268             :   //
    1269             :   //----------------------------------------------------------------------
    1270             :   //
    1271             :   // Bool AWConvFunc::findSupport(Array<Complex>& func, Float& threshold,
    1272             :   //                           Int& origin, Int& R)
    1273             :   // {
    1274             :   //   LogIO log_l(LogOrigin("AWConvFunc", "findSupport[R&D]"));
    1275             :   //   Double NSteps;
    1276             :   //   Int PixInc=1;
    1277             :   //   Vector<Complex> vals;
    1278             :   //   IPosition ndx(4,origin,0,0,0);
    1279             :   //   Bool found=false;
    1280             :   //   IPosition cfShape=func.shape();
    1281             :   //   Int convSize = cfShape(0);
    1282             : 
    1283             :   //   for(R=convSize/2-2;R>1;R--)
    1284             :   //     {
    1285             :   //    //Check every PixInc pixel along a circle of radius R
    1286             :   //    NSteps = 90*R/PixInc; 
    1287             :   //    vals.resize((Int)(NSteps+0.5));
    1288             :   //    vals=0;
    1289             :   //    for(Int th=0;th<NSteps;th++)
    1290             :   //      {
    1291             :   //        ndx(0)=(int)(origin + R*sin(2.0*M_PI*th*PixInc/R));
    1292             :   //        ndx(1)=(int)(origin + R*cos(2.0*M_PI*th*PixInc/R));
    1293             :             
    1294             :   //        if ((ndx(0) < cfShape(0)) && (ndx(1) < cfShape(1)))
    1295             :   //          vals(th)=func(ndx);
    1296             :   //      }
    1297             : 
    1298             :   //    if (max(abs(vals)) > threshold)
    1299             :   //      {found=true;break;}
    1300             :   //     }
    1301             :   //   return found;
    1302             :   // }
    1303             :   //
    1304             :   //----------------------------------------------------------------------
    1305             :   //
    1306           0 :   Bool AWConvFunc::makeAverageResponse(const VisBuffer& vb, 
    1307             :                                        const ImageInterface<Complex>& image,
    1308             :                                        ImageInterface<Float>& theavgPB,
    1309             :                                        Bool reset)
    1310             :   {
    1311           0 :     TempImage<Complex> complexPB;
    1312             :     Bool pbMade;
    1313           0 :     pbMade = makeAverageResponse(vb, image, complexPB,reset);
    1314           0 :     normalizeAvgPB(complexPB, theavgPB);        
    1315           0 :     return pbMade;
    1316           0 :   }
    1317             :   //
    1318             :   //----------------------------------------------------------------------
    1319             :   //
    1320           0 :   Bool AWConvFunc::makeAverageResponse(const VisBuffer& vb, 
    1321             :                                        const ImageInterface<Complex>& image,
    1322             :                                        ImageInterface<Complex>& theavgPB,
    1323             :                                        Bool reset)
    1324             :   {
    1325           0 :     LogIO log_l(LogOrigin("AWConvFunc","makeAverageResponse(Complex)[R&D]"));
    1326             :     
    1327           0 :     log_l << "Making the average response for " << aTerm_p->name() 
    1328           0 :           << LogIO::NORMAL  << LogIO::POST;
    1329             :     
    1330           0 :     if (reset)
    1331             :       {
    1332             :         log_l << "Initializing the average PBs"
    1333           0 :               << LogIO::NORMAL << LogIO::POST;
    1334           0 :         theavgPB.resize(image.shape()); 
    1335           0 :         theavgPB.setCoordinateInfo(image.coordinates());
    1336           0 :         theavgPB.set(1.0);
    1337             :       }
    1338             :     
    1339           0 :     aTerm_p->applySky(theavgPB, vb, true, 0);
    1340             :     
    1341           0 :     return true; // i.e., an average PB was made 
    1342           0 :   }
    1343             :   //
    1344             :   //----------------------------------------------------------------------
    1345             :   //
    1346           0 :   void AWConvFunc::normalizeAvgPB(ImageInterface<Complex>& inImage,
    1347             :                                   ImageInterface<Float>& outImage)
    1348             :   {
    1349           0 :     LogIO log_l(LogOrigin("AWConvFunc", "normalizeAvgPB[R&D]"));
    1350             :     
    1351           0 :     String name("avgpb.im");
    1352           0 :     storeImg(name,inImage);
    1353           0 :     IPosition inShape(inImage.shape()),ndx(4,0,0,0,0);
    1354           0 :     Vector<Complex> peak(inShape(2));
    1355             :     
    1356           0 :     outImage.resize(inShape);
    1357           0 :     outImage.setCoordinateInfo(inImage.coordinates());
    1358             :     
    1359             :     Bool isRefIn;
    1360           0 :     Array<Complex> inBuf;
    1361           0 :     Array<Float> outBuf;
    1362             :     
    1363           0 :     isRefIn  = inImage.get(inBuf);
    1364             :     //isRefOut = outImage.get(outBuf);
    1365             :     log_l << "Normalizing the average PBs to unity"
    1366           0 :           << LogIO::NORMAL << LogIO::POST;
    1367             :     //
    1368             :     // Normalize each plane of the inImage separately to unity.
    1369             :     //
    1370           0 :     Complex inMax = max(inBuf);
    1371           0 :     if (abs(inMax)-1.0 > 1E-3)
    1372             :       {
    1373           0 :         for(ndx(3)=0;ndx(3)<inShape(3);ndx(3)++)
    1374           0 :           for(ndx(2)=0;ndx(2)<inShape(2);ndx(2)++)
    1375             :             {
    1376           0 :               peak(ndx(2)) = 0;
    1377           0 :               for(ndx(1)=0;ndx(1)<inShape(1);ndx(1)++)
    1378           0 :                 for(ndx(0)=0;ndx(0)<inShape(0);ndx(0)++)
    1379           0 :                   if (abs(inBuf(ndx)) > peak(ndx(2)))
    1380           0 :                     peak(ndx(2)) = inBuf(ndx);
    1381             :               
    1382           0 :               for(ndx(1)=0;ndx(1)<inShape(1);ndx(1)++)
    1383           0 :                 for(ndx(0)=0;ndx(0)<inShape(0);ndx(0)++)
    1384             :                   //                  avgPBBuf(ndx) *= (pbPeaks(ndx(2))/peak(ndx(2)));
    1385           0 :                   inBuf(ndx) /= peak(ndx(2));
    1386             :             }
    1387           0 :         if (isRefIn) inImage.put(inBuf);
    1388             :       }
    1389             :     
    1390           0 :     ndx=0;
    1391           0 :     for(ndx(1)=0;ndx(1)<inShape(1);ndx(1)++)
    1392           0 :       for(ndx(0)=0;ndx(0)<inShape(0);ndx(0)++)
    1393             :         {
    1394           0 :           IPosition plane1(ndx);
    1395           0 :           plane1=ndx;
    1396           0 :           plane1(2)=1; // The other poln. plane
    1397             :           //      avgPBBuf(ndx) = (avgPBBuf(ndx) + avgPBBuf(plane1))/2.0;
    1398           0 :           outBuf(ndx) = sqrt(real(inBuf(ndx) * inBuf(plane1)));
    1399           0 :         }
    1400             :     //
    1401             :     // Rather convoluted way of copying Pol. plane-0 to Pol. plane-1!!!
    1402             :     //
    1403           0 :     for(ndx(1)=0;ndx(1)<inShape(1);ndx(1)++)
    1404           0 :       for(ndx(0)=0;ndx(0)<inShape(0);ndx(0)++)
    1405             :         {
    1406           0 :           IPosition plane1(ndx);
    1407           0 :           plane1=ndx;
    1408           0 :           plane1(2)=1; // The other poln. plane
    1409           0 :           outBuf(plane1) = real(outBuf(ndx));
    1410           0 :         }
    1411           0 :   }
    1412             :   //
    1413             :   //-------------------------------------------------------------------------
    1414             :   // Legacy code.  Should ultimately be deleteted after re-facatoring
    1415             :   // is finished.
    1416             :   //
    1417           0 :   Bool AWConvFunc::makeAverageResponse_org(const VisBuffer& vb, 
    1418             :                                            const ImageInterface<Complex>& image,
    1419             :                                            ImageInterface<Float>& theavgPB,
    1420             :                                            Bool reset)
    1421             :   {
    1422           0 :     LogIO log_l(LogOrigin("AWConvFunc", "makeAverageResponse_org[R&D]"));
    1423           0 :     TempImage<Float> localPB;
    1424             :     
    1425             :     log_l << "Making the average response for " 
    1426           0 :           << aTerm_p->name() 
    1427           0 :           << LogIO::NORMAL << LogIO::POST;
    1428             :     
    1429           0 :     localPB.resize(image.shape()); localPB.setCoordinateInfo(image.coordinates());
    1430           0 :     if (reset)
    1431             :       {
    1432           0 :         log_l << "Initializing the average PBs" << LogIO::NORMAL << LogIO::POST;
    1433           0 :         theavgPB.resize(localPB.shape()); 
    1434           0 :         theavgPB.setCoordinateInfo(localPB.coordinates());
    1435           0 :         theavgPB.set(0.0);
    1436             :       }
    1437             :     //
    1438             :     // Make the Stokes PB
    1439             :     //
    1440           0 :     localPB.set(1.0);
    1441             :     
    1442             :     // Block<CountedPtr<ImageInterface<Float > > > tmpBlock(1);
    1443             :     // tmpBlock[0]=CountedPtr<ImageInterface<Float> >(&localPB, false);
    1444             :     // aTerm_p->applySky(tmpBlock, vb, 0, false);
    1445           0 :     aTerm_p->applySky(localPB, vb, false, 0);
    1446             :     
    1447           0 :     IPosition twoDPBShape(localPB.shape());
    1448           0 :     TempImage<Complex> localTwoDPB(twoDPBShape,localPB.coordinates());
    1449             :     //    localTwoDPB.setMaximumCacheSize(cachesize);
    1450             :     Int NAnt;
    1451           0 :     NAnt=1;
    1452             :     
    1453           0 :     for(Int ant=0;ant<NAnt;ant++)
    1454             :       { //Ant loop
    1455             :         {
    1456           0 :           IPosition ndx(4,0,0,0,0);
    1457           0 :           for(ndx(0)=0; ndx(0)<twoDPBShape(0); ndx(0)++)
    1458           0 :             for(ndx(1)=0; ndx(1)<twoDPBShape(1); ndx(1)++)
    1459           0 :               for(ndx(2)=0; ndx(2)<twoDPBShape(2); ndx(2)++)
    1460           0 :                 for(ndx(3)=0; ndx(3)<twoDPBShape(3); ndx(3)++)
    1461           0 :                   localTwoDPB.putAt(Complex((localPB(ndx)),0.0),ndx);
    1462           0 :         }
    1463             :         //
    1464             :         // Accumulate the shifted PBs
    1465             :         //
    1466             :         {
    1467             :           Bool isRefF;
    1468           0 :           Array<Float> fbuf;
    1469           0 :           Array<Complex> cbuf;
    1470           0 :           isRefF=theavgPB.get(fbuf);
    1471             :           //isRefC=localTwoDPB.get(cbuf);
    1472             :           
    1473           0 :           IPosition fs(fbuf.shape());
    1474           0 :           IPosition ndx(4,0,0,0,0),avgNDX(4,0,0,0,0);
    1475           0 :           for(ndx(3)=0,avgNDX(3)=0;ndx(3)<fs(3);ndx(3)++,avgNDX(3)++)
    1476           0 :             for(ndx(2)=0,avgNDX(2)=0;ndx(2)<twoDPBShape(2);ndx(2)++,avgNDX(2)++)
    1477           0 :               for(ndx(0)=0,avgNDX(0)=0;ndx(0)<fs(0);ndx(0)++,avgNDX(0)++)
    1478           0 :                 for(ndx(1)=0,avgNDX(1)=0;ndx(1)<fs(1);ndx(1)++,avgNDX(1)++)
    1479             :                   {
    1480             :                     Float val;
    1481           0 :                     val = real(cbuf(ndx));
    1482           0 :                     fbuf(avgNDX) += val;
    1483             :                   }
    1484           0 :           if (!isRefF) theavgPB.put(fbuf);
    1485           0 :         }
    1486             :       }
    1487           0 :     theavgPB.setCoordinateInfo(localPB.coordinates());
    1488           0 :     return true; // i.e., an average PB was made
    1489           0 :   }
    1490             :   //
    1491             :   //----------------------------------------------------------------------
    1492             :   //
    1493           0 :   void AWConvFunc::prepareConvFunction(const VisBuffer& vb, VBRow2CFBMapType& theMap)
    1494             :   {
    1495           0 :     if (aTerm_p->rotationallySymmetric() == false) return;
    1496           0 :     Int nRow=theMap.nelements();
    1497             :     // CountedPtr<CFBuffer> cfb, cbPtr;
    1498             :     // CountedPtr<CFCell>  cfc;
    1499             :     // CountedPtr<ATerm> aTerm_l=aTerm_p;
    1500           0 :     CFBuffer *cfb, *cbPtr=0;
    1501           0 :     CFCell  *cfc, *baseCFC=NULL;
    1502           0 :     ATerm *aTerm_l=&*aTerm_p;
    1503             :     
    1504           0 :     cfb=&*(theMap(0));
    1505           0 :     cfc = &*(cfb->getCFCellPtr(0,0,0));
    1506           0 :     Double actualPA = getPA(vb), currentCFPA = cfc->pa_p.getValue("rad");
    1507           0 :     Double dPA = currentCFPA-actualPA;
    1508             : 
    1509           0 :     if (fabs(dPA) <= fabs(rotateCFOTFAngleRad_p)) return;
    1510             : 
    1511           0 :     LogIO log_l(LogOrigin("AWConvFunc", "prepareConvFunction"));
    1512             : 
    1513             : //     Int Nth=1;
    1514             : // #ifdef _OPENMP
    1515             : //     Nth=max(omp_get_max_threads()-2,1);
    1516             : // #endif
    1517           0 :     for (Int irow=0;irow<nRow;irow++)
    1518             :       {
    1519           0 :         cfb=&*(theMap(irow));
    1520             :         //      if ((!cfb.null()) && (cfb != cbPtr))
    1521           0 :         if ((cfb!=NULL) && (cfb != cbPtr))
    1522             :           {
    1523             :             // baseCFB_p = cfb->clone();
    1524             :             // cerr << "NRef = " << baseCFB_p.nrefs() << endl;
    1525             :             //
    1526             :             // If the following messsage is emitted more than once, we
    1527             :             // are in a heterogeneous-array case
    1528             :             //
    1529           0 :             log_l << "Rotating the base CFB from PA=" << cfb->getCFCellPtr(0,0,0)->pa_p.getValue("deg") 
    1530             :                   << " to " << actualPA*57.2957795131 
    1531           0 :                   << " " << cfb->getCFCellPtr(0,0,0)->shape_p
    1532           0 :                   << LogIO::DEBUG1 << LogIO::POST;
    1533             : 
    1534           0 :             IPosition shp(cfb->shape());
    1535           0 :             cbPtr = cfb;
    1536           0 :             for(Int k=0;k<shp(2);k++)   // Mueller-loop
    1537           0 :               for(Int j=0;j<shp(1);j++)     // W-loop
    1538             : // #pragma omp parallel default(none) firstprivate(j,k) shared(shp,cfb,aTerm_l) num_threads(Nth)
    1539             :      {
    1540             : // #pragma omp for
    1541           0 :                 for (Int i=0;i<shp(0);i++)      // Chan-loop
    1542             :                   {
    1543           0 :                     cfc = &*(cfb->getCFCellPtr(i,j,k));
    1544             : 
    1545             :                     //baseCFC = &*(baseCFB_p->getCFCellPtr(i,j,k));
    1546             :                     // Call this for every VB.  Any optimization
    1547             :                     // (e.g. rotating at some increment only) is
    1548             :                     // implemented in the ATerm::rotate().
    1549             :                     //              if (rotateCF_p) 
    1550             : 
    1551             :                     // Rotate the cell only if it has been loaded.
    1552           0 :                     if (cfc->getShape().product() > 0)
    1553           0 :                       aTerm_l->rotate2(vb,*baseCFC, *cfc,rotateCFOTFAngleRad_p);
    1554             :                   }
    1555             :     }
    1556           0 :           }
    1557             :       }
    1558           0 :   };
    1559             :   //
    1560             :   //----------------------------------------------------------------------
    1561             :   //
    1562           0 :   void AWConvFunc::setMiscInfo(const RecordInterface& params)
    1563             :   {
    1564             :     (void)params;
    1565           0 :   }
    1566             :   //
    1567             :   // REFACTORED CODE
    1568             :   //
    1569             : 
    1570             :   //
    1571             :   //----------------------------------------------------------------------
    1572             :   //
    1573           0 :   void AWConvFunc::fillConvFuncBuffer2(CFBuffer& cfb, CFBuffer& cfWtb,
    1574             :                                        const Int& nx, const Int& ny, 
    1575             :                                        const ImageInterface<Complex>& skyImage,
    1576             :                                        //const CoordinateSystem& skyCoords,
    1577             :                                        const CFCStruct& miscInfo,
    1578             :                                        PSTerm& psTerm, WTerm& wTerm, ATerm& aTerm,
    1579             :                                        Bool conjPB)
    1580             : 
    1581             :   {
    1582           0 :     LogIO log_l(LogOrigin("AWConvFunc", "fillConvFuncBuffer2[R&D]"));
    1583           0 :     Complex cfNorm, cfWtNorm;
    1584           0 :     Complex cpeak;
    1585             :     {
    1586             :       Float sampling, samplingWt;
    1587             :       Int xSupport, ySupport, xSupportWt, ySupportWt;
    1588           0 :       CoordinateSystem cs_l;
    1589             :       // Extract the parameters index by (MuellerElement, Freq, W)
    1590           0 :       cfWtb.getParams(cs_l, samplingWt, xSupportWt, ySupportWt, 
    1591           0 :                       miscInfo.freqValue,
    1592             :                       //                                wValues(iw), 
    1593           0 :                       miscInfo.wValue, 
    1594           0 :                       miscInfo.muellerElement);
    1595           0 :       cfb.getParams(cs_l, sampling, xSupport, ySupport, 
    1596           0 :                     miscInfo.freqValue,
    1597           0 :                     miscInfo.wValue, 
    1598           0 :                     miscInfo.muellerElement);
    1599             :       //
    1600             :       // Cache the A-Term for this polarization and frequency
    1601             :       //
    1602             :       Double conjFreq, vbPA;
    1603           0 :       CountedPtr<CFCell> thisCell=cfb.getCFCellPtr(miscInfo.freqValue, miscInfo.wValue, miscInfo.muellerElement);
    1604           0 :       vbPA = thisCell->pa_p.getValue("rad");
    1605           0 :       conjFreq = thisCell->conjFreq_p;
    1606           0 :       CoordinateSystem conjPolCS_l=cs_l;  AWConvFunc::makeConjPolAxis(conjPolCS_l, thisCell->conjPoln_p);
    1607           0 :       IPosition pbshp(4,nx,ny,1,1);
    1608           0 :       TempImage<Complex> ftATerm_l(pbshp, cs_l), ftATermSq_l(pbshp,conjPolCS_l);
    1609           0 :       Bool doSquint=true;
    1610           0 :       ftATerm_l.set(Complex(1.0,0.0));   ftATermSq_l.set(Complex(1.0,0.0));
    1611           0 :       Double freq_l=miscInfo.freqValue;
    1612             : 
    1613             :       {
    1614           0 :         aTerm.applySky(ftATerm_l, vbPA, doSquint, 0, miscInfo.muellerElement,freq_l);//freqHi);
    1615             : 
    1616           0 :         if (conjPB) aTerm.applySky(ftATermSq_l, vbPA, doSquint, 0,miscInfo.muellerElement,conjFreq);
    1617           0 :         else aTerm.applySky(ftATermSq_l, vbPA, doSquint, 0,miscInfo.muellerElement,freq_l);
    1618             :       }
    1619             : 
    1620           0 :       Vector<Double> cellSize;
    1621             :       {
    1622           0 :         CoordinateSystem skyCoords(skyImage.coordinates());
    1623           0 :         Int directionIndex=skyCoords.findCoordinate(Coordinate::DIRECTION);
    1624           0 :         DirectionCoordinate dc=skyCoords.directionCoordinate(directionIndex);
    1625           0 :         cellSize = dc.increment()*(Double)(miscInfo.sampling*skyImage.shape()(0)/nx); // nx is the size of the CF buffer
    1626           0 :       }
    1627             : 
    1628             :       //
    1629             :       // Now compute the PS x W-Term and apply the cached
    1630             :       // A-Term to build the full CF.
    1631             :       //
    1632             :       {
    1633             :         log_l << " CF("
    1634           0 :               << "M:"<< miscInfo.muellerElement
    1635           0 :               << ",C:" << miscInfo.freqValue/1e9
    1636           0 :               << ",W:" << miscInfo.wValue << "): ";
    1637           0 :         Array<Complex> &cfWtBuf=(*(cfWtb.getCFCellPtr(miscInfo.freqValue, miscInfo.wValue, miscInfo.muellerElement))->storage_p);
    1638           0 :         Array<Complex> &cfBuf=(*(cfb.getCFCellPtr(miscInfo.freqValue, miscInfo.wValue, miscInfo.muellerElement))->storage_p);
    1639             :                     
    1640           0 :         cfWtBuf.resize(pbshp);
    1641           0 :         cfBuf.resize(pbshp);
    1642             : 
    1643           0 :         const Vector<Double> sampling_l(2,sampling);
    1644           0 :         Matrix<Complex> cfBufMat(cfBuf.nonDegenerate()), 
    1645           0 :           cfWtBufMat(cfWtBuf.nonDegenerate());
    1646             :         //
    1647             :         // Apply the Prolate Spheroidal and W-Term kernels
    1648             :         //
    1649           0 :         Vector<Double> s(2); s=sampling;
    1650             :         //Timer tim;
    1651             :         //tim.mark();
    1652           0 :         if (psTerm.isNoOp())
    1653           0 :           cfBufMat = cfWtBufMat = 1.0;
    1654             :         else
    1655             :           {
    1656             :             // psTerm.applySky(cfBufMat, False);   // Assign (psScale set in psTerm.init()
    1657             :             // psTerm.applySky(cfWtBufMat, False); // Assign
    1658           0 :             psTerm.applySky(cfBufMat, s, cfBufMat.shape()(0)/s(0));   // Assign (psScale set in psTerm.init()
    1659           0 :             psTerm.applySky(cfWtBufMat, s, cfWtBufMat.shape()(0)/s(0)); // Assign
    1660           0 :             cfWtBuf *= cfWtBuf;
    1661             :           }
    1662             : 
    1663             :         //tim.mark();
    1664           0 :         if (miscInfo.wValue > 0)
    1665           0 :           wTerm.applySky(cfBufMat, cellSize, miscInfo.wValue, cfBuf.shape()(0));///4);
    1666           0 :         IPosition PolnPlane(4,0,0,0,0),
    1667           0 :           pbShape(4, cfBuf.shape()(0), cfBuf.shape()(1), 1, 1);
    1668             :         //
    1669             :         // Make TempImages and copy the buffers with PS *
    1670             :         // WKernel applied (too bad that TempImages can't be
    1671             :         // made with existing buffers)
    1672             :         //
    1673             :         //-------------------------------------------------------------             
    1674           0 :         TempImage<Complex> twoDPB_l(pbShape, cs_l);
    1675           0 :         TempImage<Complex> twoDPBSq_l(pbShape,cs_l);
    1676             :         //-------------------------------------------------------------             
    1677             :         // WBAWP CODE BEGIN -- ftATermSq_l has conj. PolCS
    1678           0 :         cfWtBuf *= ftATerm_l.get()*conj(ftATermSq_l.get());
    1679             : 
    1680             :         //tim.mark();
    1681           0 :         cfBuf *= ftATerm_l.get();
    1682             :         //tim.show("W*A*2: ");
    1683             :         // WBAWP CODE END
    1684             :         //tim.mark();
    1685           0 :         twoDPB_l.putSlice(cfBuf, PolnPlane);
    1686           0 :         twoDPBSq_l.putSlice(cfWtBuf, PolnPlane);
    1687             :         //tim.show("putSlice:");
    1688             : 
    1689             :         // To accumulate avgPB2, call this function. 
    1690             :         // PBSQWeight
    1691             :         // Bool PBSQ = false;
    1692             :         // if(PBSQ) makePBSq(twoDPBSq_l); 
    1693             :                     
    1694             :         //
    1695             :         // Set the ref. freq. of the co-ordinate system to
    1696             :         // that set by ATerm::applySky().
    1697             :         //
    1698             :         //tim.mark();
    1699           0 :         CoordinateSystem cs=twoDPB_l.coordinates();
    1700           0 :         Int index= twoDPB_l.coordinates().findCoordinate(Coordinate::SPECTRAL);
    1701           0 :         SpectralCoordinate SpCS = twoDPB_l.coordinates().spectralCoordinate(index);
    1702             :                     
    1703           0 :         Double cfRefFreq=SpCS.referenceValue()(0);
    1704           0 :         Vector<Double> refValue; refValue.resize(1); refValue(0)=cfRefFreq;
    1705           0 :         SpCS.setReferenceValue(refValue);
    1706           0 :         cs.replaceCoordinate(SpCS,index);
    1707             :         
    1708             :         //tim.mark();
    1709             :         {
    1710           0 :           LatticeFFT::cfft2d(twoDPB_l);
    1711           0 :           LatticeFFT::cfft2d(twoDPBSq_l);
    1712             :         }
    1713             :         //tim.show("FFT*2:");
    1714             : 
    1715             :         //tim.mark();
    1716           0 :         IPosition shp(twoDPB_l.shape());
    1717           0 :         IPosition start(4, 0, 0, 0, 0), pbSlice(4, shp[0]-1, shp[1]-1,1/*polInUse*/, 1),
    1718           0 :           sliceLength(4,cfBuf.shape()[0]-1,cfBuf.shape()[1]-1,1,1);
    1719             :                     
    1720           0 :         cfBuf(Slicer(start,sliceLength)).nonDegenerate()
    1721           0 :           =(twoDPB_l.getSlice(start, pbSlice, true));
    1722             :                     
    1723           0 :         shp = twoDPBSq_l.shape();
    1724           0 :         IPosition pbSqSlice(4, shp[0]-1, shp[1]-1, 1, 1),
    1725           0 :           sqSliceLength(4,cfWtBuf.shape()(0)-1,cfWtBuf.shape()[1]-1,1,1);
    1726             :                     
    1727           0 :         cfWtBuf(Slicer(start,sqSliceLength)).nonDegenerate()
    1728           0 :           =(twoDPBSq_l.getSlice(start, pbSqSlice, true));
    1729             :         //tim.show("Slicer*2:");
    1730             : 
    1731             :         //tim.mark();
    1732           0 :         Int supportBuffer = (Int)(AWConvFunc::getOversampling(psTerm, wTerm, aTerm)*2.0);
    1733             : 
    1734           0 :         AWConvFunc::resizeCF(cfWtBuf, xSupportWt, ySupportWt, supportBuffer, samplingWt,0.0);
    1735             :         //tim.show("Resize:");
    1736             : 
    1737             :         //tim.mark();
    1738           0 :         Vector<Double> ftRef(2);
    1739           0 :         ftRef(0)=cfWtBuf.shape()(0)/2.0;
    1740           0 :         ftRef(1)=cfWtBuf.shape()(1)/2.0;
    1741           0 :         CoordinateSystem ftCoords=cs_l;
    1742           0 :         SynthesisUtils::makeFTCoordSys(cs_l, cfWtBuf.shape()(0), ftRef, ftCoords);
    1743             :         
    1744           0 :         thisCell=cfWtb.getCFCellPtr(miscInfo.freqValue, miscInfo.wValue, miscInfo.muellerElement);
    1745           0 :         thisCell->pa_p=Quantity(vbPA,"rad");
    1746           0 :         thisCell->coordSys_p = ftCoords;
    1747           0 :         thisCell->xSupport_p = xSupportWt;
    1748           0 :         thisCell->ySupport_p = ySupportWt;
    1749           0 :         thisCell->isRotationallySymmetric_p = aTerm.isNoOp();
    1750             :         //tim.show("CSStuff:");
    1751             : 
    1752             :         //tim.mark();
    1753             :         {
    1754           0 :           cpeak = max(cfBuf);
    1755           0 :           cfBuf /= cpeak;
    1756             :         }
    1757             :         //tim.show("Peaknorm:");
    1758             : 
    1759           0 :         AWConvFunc::resizeCF(cfBuf, xSupport, ySupport, supportBuffer, sampling,0.0);
    1760             : 
    1761           0 :         log_l << "CF Support: " << xSupport << " (" << xSupportWt << ") " << "pixels" <<  LogIO::POST;
    1762             :         
    1763           0 :         ftRef(0)=cfBuf.shape()(0)/2.0;
    1764           0 :         ftRef(1)=cfBuf.shape()(1)/2.0;
    1765             : 
    1766             :         //tim.mark();
    1767             :         //      if (miscInfo.wValue == 0)
    1768             :         {
    1769           0 :           cfNorm=0; cfWtNorm=0;
    1770           0 :           cfNorm = AWConvFunc::cfArea(cfBufMat, xSupport, ySupport, sampling);
    1771           0 :           cfWtNorm = AWConvFunc::cfArea(cfWtBufMat, xSupportWt, ySupportWt, sampling);      
    1772             :         }
    1773             :         //tim.show("Area*2:");
    1774             : 
    1775             :         //==============================================================
    1776             :           // thisCell=cfb.getCFCellPtr(miscInfo.freqValue, miscInfo.wValue, miscInfo.muellerElement);
    1777             :           // if (real(cfNorm) > 1e7)
    1778             :           //   {
    1779             :           //     cfNorm -= Complex(1e7,0.0);
    1780             :           //     ostringstream name;
    1781             :           //     name << "WT_" << miscInfo.wValue;
    1782             :           //     thisCell->makePersistent("./",name.str().c_str());
    1783             :           //   }
    1784             :           // if (real(cfWtNorm) > 1e7)
    1785             :           //   {
    1786             :           //     cfWtNorm -= Complex(1e7,0.0);
    1787             :           //     // ostringstream name;
    1788             :           //     // name << "CFWT_" << miscInfo.wValue;
    1789             :           //     // storeArrayAsImage(name,ftCoords, cfWtBufMat);
    1790             :           //   }
    1791             :         //==============================================================
    1792             : 
    1793             :         
    1794             :         //tim.mark();
    1795           0 :         cfBuf /= cfNorm;
    1796           0 :         cfWtBuf /= cfWtNorm;
    1797             :         //tim.show("cfNorm*2:");
    1798             : 
    1799             :         //tim.mark();
    1800           0 :         ftCoords=cs_l;
    1801           0 :         SynthesisUtils::makeFTCoordSys(cs_l, cfBuf.shape()(0), ftRef, ftCoords);
    1802             :         //CountedPtr<CFCell>
    1803             : 
    1804           0 :         thisCell=cfb.getCFCellPtr(miscInfo.freqValue, miscInfo.wValue, miscInfo.muellerElement);
    1805           0 :         thisCell->pa_p=Quantity(vbPA,"rad");
    1806           0 :         thisCell->coordSys_p = ftCoords;
    1807           0 :         thisCell->xSupport_p = xSupport;
    1808           0 :         thisCell->ySupport_p = ySupport;
    1809           0 :         thisCell->isRotationallySymmetric_p = aTerm.isNoOp();
    1810             : 
    1811           0 :         (cfWtb.getCFCellPtr(miscInfo.freqValue, miscInfo.wValue, miscInfo.muellerElement))->initCache();
    1812           0 :         (cfb.getCFCellPtr(miscInfo.freqValue, miscInfo.wValue, miscInfo.muellerElement))->initCache();
    1813             :         //tim.show("End*2:");
    1814           0 :       }
    1815           0 :     }
    1816           0 :   }
    1817             : 
    1818             : 
    1819             :   //
    1820             :   //----------------------------------------------------------------------
    1821             :   //
    1822           0 :   void AWConvFunc::makeConvFunction2(const String& cfCachePath,
    1823             :                                      const Vector<Double>& uvScale, const Vector<Double>& uvOffset,
    1824             :                                      const Matrix<Double>& ,//vbFreqSelection,
    1825             :                                      CFStore2& cfs2,
    1826             :                                      CFStore2& cfwts2,
    1827             :                                      const Bool psTermOn,
    1828             :                                      const Bool aTermOn,
    1829             :                                      const Bool conjBeams)
    1830             :   {
    1831           0 :     LogIO log_l(LogOrigin("AWConvFunc", "makeConvFunction2[R&D]"));
    1832             :     Int convSize, convSampling;//, polInUse;
    1833           0 :     Array<Complex> convFunc_l, convWeights_l;
    1834             :     //  
    1835             :     // Get the coordinate system
    1836             :     //
    1837           0 :     const String uvGridDiskImage=cfCachePath+"/"+"uvgrid.im";
    1838           0 :     PagedImage<Complex> image_l(uvGridDiskImage);//cfs2.getCacheDir()+"/uvgrid.im");
    1839           0 :     CoordinateSystem coords(image_l.coordinates());
    1840             :     
    1841             :     //Int nx=image_l.shape()(0);//, ny=image.shape()(1);
    1842           0 :     CountedPtr<CFBuffer> cfb_p, cfwtb_p;
    1843             :     
    1844           0 :     IPosition cfsShape = cfs2.getShape();
    1845           0 :     IPosition wCFStShape = cfwts2.getShape();
    1846             : 
    1847             :     //Matrix<Int> uniqueBaselineTypeList=makeBaselineList(aTerm_p->getAntTypeList());
    1848             :     Bool wbAWP, wTermOn;
    1849             : 
    1850           0 :     for (int iPA=0; iPA<cfsShape[0]; iPA++)
    1851           0 :       for (int iB=0; iB<cfsShape[1]; iB++)
    1852             :           {
    1853           0 :             log_l << "Filling CFs for baseline type " << iB << ", PA slot " << iPA << LogIO::WARN << LogIO::POST;
    1854           0 :             cfb_p=cfs2.getCFBuffer(iPA,iB);
    1855           0 :             cfwtb_p=cfwts2.getCFBuffer(iPA,iB);
    1856             : 
    1857           0 :             IPosition cfbShape = cfb_p->shape();
    1858             : 
    1859           0 :             for (int iNu=0; iNu<cfbShape(0); iNu++)       // Frequency axis
    1860           0 :               for (int iPol=0; iPol<cfbShape(2); iPol++)     // Polarization axis
    1861           0 :                 for (int iW=0; iW<cfbShape(1); iW++)   // W axis
    1862             :                   {
    1863           0 :                     CFCStruct miscInfo;
    1864           0 :                     CoordinateSystem cs_l;
    1865             :                     Int xSupport, ySupport;
    1866             :                     Float sampling;
    1867             : 
    1868           0 :                     CountedPtr<CFCell>& tt=(*cfb_p).getCFCellPtr(iNu, iW, iPol);
    1869             :                     //cerr << "####@#$#@$@ " << iNu << " " << iW << " " << iPol << endl;
    1870             :                     //tt->show("test",cout);
    1871           0 :                     if (tt->cfShape_p.nelements() != 0)
    1872             :                        {
    1873           0 :                          (*cfb_p)(iNu,iW,iPol).getAsStruct(miscInfo); // Get misc. info. for this CFCell
    1874             : 
    1875           0 :                          wbAWP=True; // Always true since the Freq. value is got from the coord. sys.
    1876           0 :                          wTermOn=(miscInfo.wValue > 0.0);
    1877             : 
    1878             :                          CountedPtr<ConvolutionFunction> awCF = AWProjectFT::makeCFObject(miscInfo.telescopeName,
    1879           0 :                                                                                           aTermOn, psTermOn, wTermOn, True, wbAWP, conjBeams);
    1880           0 :                          (static_cast<AWConvFunc &>(*awCF)).aTerm_p->cacheVBInfo(miscInfo.telescopeName, miscInfo.diameter);
    1881             :                          //aTerm_p->cacheVBInfo(miscInfo.telescopeName, miscInfo.diameter);
    1882             : 
    1883           0 :                          cfb_p->getParams(cs_l, sampling, xSupport, ySupport,iNu,iW,iPol);
    1884           0 :                          convSampling=miscInfo.sampling;
    1885             : 
    1886             :                          //convSize=miscInfo.shape[0];
    1887             :                          // This method loads "empty CFs".  Those have
    1888             :                          // support size equal to the CONVBUF size
    1889             :                          // required.  So use that, instead of the
    1890             :                          // "shape" information from CFs, since the
    1891             :                          // latter for empty CFs can be small (to save
    1892             :                          // disk space and i/o -- the CFs are supposed
    1893             :                          // to be empty anyway at this stage!)
    1894           0 :                          convSize=xSupport; 
    1895             : 
    1896           0 :                          IPosition start(4, 0, 0, 0, 0);
    1897           0 :                          IPosition pbSlice(4, convSize, convSize, 1, 1);
    1898             :                          
    1899           0 :                          Matrix<Complex> screen(convSize, convSize);
    1900             :                          
    1901           0 :                          Int inner=convSize/(convSampling);
    1902             :                          //Float psScale = (2*coords.increment()(0))/(nx*image.coordinates().increment()(0));
    1903           0 :                          Float innerQuaterFraction=1.0;
    1904             :                          
    1905           0 :                          Float psScale = 2.0/(innerQuaterFraction*convSize/convSampling);// nx*image.coordinates().increment()(0)*convSampling/2;
    1906           0 :                          ((static_cast<AWConvFunc &>(*awCF)).psTerm_p)->init(IPosition(2,inner,inner), uvScale, uvOffset,psScale);
    1907             :                          
    1908             :                          //
    1909             :                          // By this point,  all the 4 axis (Time/PA, Freq, Pol, Baseline)
    1910             :                          // of the CFBuffer objects have been setup.  The CFs will now
    1911             :                          // be filled using the supplied PS-, W- and the A-term objects.
    1912             :                          //
    1913             :                          
    1914           0 :                          AWConvFunc::fillConvFuncBuffer2(*cfb_p, *cfwtb_p, convSize, convSize, 
    1915             :                                                          image_l,//coords,
    1916             :                                                          miscInfo,
    1917           0 :                                                          *((static_cast<AWConvFunc &>(*awCF)).psTerm_p),
    1918           0 :                                                          *((static_cast<AWConvFunc &>(*awCF)).wTerm_p),
    1919           0 :                                                          *((static_cast<AWConvFunc &>(*awCF)).aTerm_p),
    1920             :                                                          conjBeams);
    1921             :                                              
    1922             :                          //                                  *psTerm_p, *wTerm_p, *aTerm_p);
    1923             :                          //cfb_p->show(NULL,cerr);
    1924             :                          //
    1925             :                          // Make the CFStores persistent.
    1926             :                          //
    1927             :                          // cfs2.makePersistent(cfCachePath.c_str());
    1928             :                          // cfwts2.makePersistent(cfCachePath.c_str(),"WT");
    1929           0 :                        }
    1930           0 :                   }
    1931           0 :           } // End of loop over baselines
    1932             : 
    1933           0 :     cfs2.makePersistent(cfCachePath.c_str());
    1934           0 :     cfwts2.makePersistent(cfCachePath.c_str(),"","WT");
    1935             :     // Directory dir(uvGridDiskImage);
    1936             :     // dir.removeRecursive(false);
    1937             :     // dir.remove();
    1938           0 :   }
    1939           0 :   Int AWConvFunc::getOversampling(PSTerm& psTerm, WTerm& wTerm, ATerm& aTerm)
    1940             :   {
    1941             :     Int os;
    1942           0 :     if (!aTerm.isNoOp()) os=aTerm.getOversampling();
    1943           0 :     else if (!wTerm.isNoOp()) os=wTerm.getOversampling();
    1944           0 :     else os=psTerm.getOversampling();
    1945           0 :     return os;
    1946             :   }
    1947             : };

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