LCOV - code coverage report
Current view: top level - imageanalysis/IO - ParameterParser.cc (source / functions) Hit Total Coverage
Test: casacpp_coverage.info Lines: 0 127 0.0 %
Date: 2024-10-10 19:51:30 Functions: 0 3 0.0 %

          Line data    Source code
       1             : //# ParameterParser.h
       2             : //# Copyright (C) 2007
       3             : //# Associated Universities, Inc. Washington DC, USA.
       4             : //#
       5             : //# This program is free software; you can redistribute it and/or modify it
       6             : //# under the terms of the GNU General Public License as published by the Free
       7             : //# Software Foundation; either version 2 of the License, or (at your option)
       8             : //# any later version.
       9             : //#
      10             : //# This program is distributed in the hope that it will be useful, but WITHOUT
      11             : //# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
      12             : //# FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License for
      13             : //# more details.
      14             : //#
      15             : //# You should have received a copy of the GNU General Public License along
      16             : //# with this program; if not, write to the Free Software Foundation, Inc.,
      17             : //# 675 Massachusetts Ave, Cambridge, MA 02139, USA.
      18             : //#
      19             : //# Correspondence concerning AIPS++ should be addressed as follows:
      20             : //#        Internet email: casa-feedback@nrao.edu.
      21             : //#        Postal address: AIPS++ Project Office
      22             : //#                        National Radio Astronomy Observatory
      23             : //#                        520 Edgemont Road
      24             : //#                        Charlottesville, VA 22903-2475 USA
      25             : 
      26             : #include <imageanalysis/IO/ParameterParser.h>
      27             : 
      28             : #include <casacore/casa/Arrays/Vector.h>
      29             : #include <casacore/casa/Utilities/Regex.h>
      30             : #include <casacore/casa/Utilities/Sort.h>
      31             : #include <casacore/measures/Measures/Stokes.h>
      32             : #include <casacore/casa/IO/ArrayIO.h>
      33             : 
      34             : using namespace casacore;
      35             : namespace casa {
      36             : 
      37           0 : vector<uInt> ParameterParser::consolidateAndOrderRanges(
      38             :     uInt& nSelected, const vector<uInt>& ranges
      39             : ) {
      40           0 :     uInt arrSize = ranges.size()/2;
      41           0 :     uInt arrMin[arrSize];
      42           0 :     uInt arrMax[arrSize];
      43           0 :     for (uInt i=0; i<arrSize; i++) {
      44           0 :         arrMin[i] = ranges[2*i];
      45           0 :         arrMax[i] = ranges[2*i + 1];
      46             :     }    
      47           0 :     Sort sort;
      48           0 :     sort.sortKey (arrMin, TpUInt);
      49           0 :     sort.sortKey (arrMax, TpUInt, 0, Sort::Descending);
      50           0 :     Vector<uInt> inxvec;
      51           0 :     vector<uInt> consol(0);
      52           0 :     sort.sort(inxvec, arrSize);
      53           0 :     for (uInt i=0; i<arrSize; i++) {
      54           0 :         uInt idx = inxvec(i);
      55           0 :         uInt size = consol.size();
      56           0 :         uInt min = arrMin[idx];
      57           0 :         uInt max = arrMax[idx];
      58           0 :         uInt lastMax = (i == 0) ? 0 : consol[size-1];
      59           0 :         if (i==0) {
      60             :             // consol.resize(2, true);
      61             :             // consol[0] = min;
      62             :             // consol[1] = max;
      63           0 :             consol.push_back(min);
      64           0 :             consol.push_back(max);
      65             :         }
      66           0 :         else if ( 
      67             :             // overlaps previous range, so extend
      68           0 :             (min < lastMax && max > lastMax)
      69             :             // or contiguous with previous range, so extend
      70           0 :             || min == lastMax + 1
      71             :         ) {
      72             :             // overwriting the end value, so do not resize
      73           0 :             consol[size-1] = max; 
      74             :         }
      75             : 
      76           0 :         else if (min > lastMax + 1) { 
      77             :             // non overlap of and not contiguous with previous range,
      78             :             // so create new end point pair
      79           0 :             consol.push_back(min);
      80           0 :             consol.push_back(max);
      81             :         }
      82             :     }    
      83           0 :     nSelected = 0; 
      84           0 :     for (uInt i=0; i<consol.size()/2; i++) {
      85           0 :         nSelected += consol[2*i + 1] - consol[2*i] + 1; 
      86             :     }    
      87           0 :     return consol;
      88           0 : }
      89             :     
      90           0 : std::vector<uInt> ParameterParser::spectralRangesFromChans(
      91             :         uInt& nSelectedChannels, const String& specification,  const uInt nChannels
      92             : ) {
      93             :         // First split on commas
      94           0 :         Vector<String> parts = stringToVector(specification, std::regex("[,;]"));
      95           0 :         static const Regex regexuInt("^[0-9]+$");
      96           0 :         static const Regex regexRange("^[0-9]+[ \n\t\r\v\f]*~[ \n\t\r\v\f]*[0-9]+$");
      97           0 :         static const Regex regexLT("^<.*$");
      98           0 :         static const Regex regexLTEq("^<=.*$");
      99           0 :         static const Regex regexGT("^>.*$");
     100           0 :         static const Regex regexGTEq("^>=.*$");
     101           0 :         vector<uInt> ranges(0);
     102             : 
     103           0 :         for (uInt i=0; i<parts.size(); i++) {
     104           0 :                 parts[i].trim();
     105           0 :                 uInt min = 0;
     106           0 :                 uInt max = 0;
     107           0 :                 if (parts[i].matches(regexuInt)) {
     108             :                         // just one channel
     109           0 :                         min = String::toInt(parts[i]);
     110           0 :                         max = min;
     111             :                 }
     112           0 :                 else if(parts[i].matches(regexRange)) {
     113             :                         // a range of channels
     114           0 :                         Vector<String> values = stringToVector(parts[i], '~');
     115           0 :                         ThrowIf(
     116             :                                 values.size() != 2,
     117             :                                 "Incorrect specification for channel range " + parts[i]
     118             :                         );
     119           0 :                         values[0].trim();
     120           0 :                         values[1].trim();
     121           0 :                         for(uInt j=0; j < 2; j++) {
     122           0 :                                 ThrowIf(
     123             :                                         ! values[j].matches(regexuInt),
     124             :                                         "For channel specification " + values[j]
     125             :                                         + " is not a non-negative integer in "
     126             :                                         + parts[i]
     127             :                                 );
     128             :                         }
     129           0 :                         min = String::toInt(values[0]);
     130           0 :                         max = String::toInt(values[1]);
     131           0 :                 }
     132           0 :                 else if (parts[i].matches(regexLT)) {
     133           0 :                         String maxs = parts[i].matches(regexLTEq) ? parts[i].substr(2) : parts[i].substr(1);
     134           0 :                         maxs.trim();
     135           0 :                         ThrowIf(
     136             :                                 ! maxs.matches(regexuInt),
     137             :                                 "In channel specification, " + maxs
     138             :                                         + " is not a non-negative integer in " + parts[i]
     139             :                         );
     140           0 :                         min = 0;
     141           0 :                         max = String::toInt(maxs);
     142           0 :                         if (! parts[i].matches(regexLTEq)) {
     143           0 :                                 ThrowIf(
     144             :                                         max == 0,
     145             :                                         "In channel specification, max channel cannot "
     146             :                                         "be less than zero in " + parts[i]
     147             :                                 );
     148           0 :                                 max--;
     149             :                         }
     150           0 :                 }
     151           0 :                 else if (parts[i].matches(regexGT)) {
     152           0 :                         String mins = parts[i].matches(regexGTEq)
     153           0 :                         ? parts[i].substr(2)
     154           0 :                         : parts[i].substr(1);
     155           0 :                         mins.trim();
     156           0 :                         ThrowIf(
     157             :                                 ! mins.matches(regexuInt),
     158             :                                 "In channel specification, " + mins
     159             :                                         + " is not an integer in " + parts[i]
     160             :                         );
     161           0 :                         max = nChannels - 1;
     162           0 :                         min = String::toInt(mins);
     163           0 :                         if(! parts[i].matches(regexGTEq)) {
     164           0 :                                 min++;
     165             :                         }
     166           0 :                         ThrowIf(
     167             :                                 min > nChannels - 1,
     168             :                                 "Min channel cannot be greater than the (zero-based) number of channels ("
     169             :                                 + String::toString(nChannels - 1) + ") in the image"
     170             :                         );
     171           0 :                 }
     172             :                 else {
     173           0 :                         ThrowCc(
     174             :                                 "Invalid channel specification in " + parts[i]
     175             :                             + " of spec " + specification
     176             :                         );
     177             :                 }
     178           0 :                 ThrowIf(
     179             :                         min > max,
     180             :                         "Min channel " + String::toString(min) + " cannot be greater than max channel "
     181             :                         + String::toString(max) + " in " + parts[i]
     182             :                 );
     183           0 :                 ThrowIf(
     184             :                         max >= nChannels,
     185             :                         "Zero-based max channel " + String::toString(max)
     186             :                         + " must be less than the total number of channels ("
     187             :                         + String::toString(nChannels) + ") in the channel specification " + parts[i]
     188             :                 );
     189           0 :                 ranges.push_back(min);
     190           0 :                 ranges.push_back(max);
     191             :         }
     192           0 :         vector<uInt> consolidatedRanges = consolidateAndOrderRanges(nSelectedChannels, ranges);
     193           0 :         return consolidatedRanges;
     194           0 : }
     195             : 
     196           0 : std::vector<String> ParameterParser::stokesFromString(
     197             :         String& specification
     198             : ) {
     199           0 :         specification.trim();
     200           0 :         specification.ltrim('[');
     201           0 :         specification.rtrim(']');
     202           0 :         specification.upcase();
     203             : 
     204           0 :         Vector<String> parts = stringToVector(specification, std::regex("[,;]"));
     205           0 :         Vector<String> polNames = Stokes::allNames(false);
     206           0 :         uInt nNames = polNames.size();
     207           0 :         Vector<uInt> nameLengths(nNames);
     208           0 :         for (uInt i=0; i<nNames; ++i) {
     209           0 :                 nameLengths[i] = polNames[i].length();
     210             :         }
     211           0 :         uInt *lengthData = nameLengths.data();
     212             : 
     213           0 :         Vector<uInt> idx(nNames);
     214           0 :         Sort sorter;
     215           0 :         sorter.sortKey(lengthData, TpUInt, 0, Sort::Descending);
     216           0 :         sorter.sort(idx, nNames);
     217             : 
     218           0 :         Vector<String> sortedNames(nNames);
     219           0 :         for (uInt i=0; i<nNames; i++) {
     220           0 :                 sortedNames[i] = polNames[idx[i]];
     221           0 :                 sortedNames[i].upcase();
     222             :         }
     223           0 :         vector<String> myStokes;
     224           0 :         for (uInt i=0; i<parts.size(); i++) {
     225           0 :                 String part = parts[i];
     226           0 :                 part.trim();
     227           0 :                 Vector<String>::iterator iter = sortedNames.begin();
     228           0 :                 vector<Int> stokes;
     229           0 :                 while (iter != sortedNames.end() && ! part.empty()) {
     230           0 :                         if (part.startsWith(*iter)) {
     231           0 :                                 myStokes.push_back(*iter);
     232             :                                 // consume the string
     233           0 :                                 part = part.substr(iter->length());
     234           0 :                                 if (! part.empty()) {
     235             :                                         // reset the iterator to start over at the beginning of the list for
     236             :                                         // the next specified polarization
     237           0 :                                         iter = sortedNames.begin();
     238             :                                 }
     239             :                         }
     240             :                         else {
     241           0 :                                 ++iter;
     242             :                         }
     243             :                 }
     244           0 :                 ThrowIf(
     245             :                         ! part.empty(),
     246             :                         "(Sub)String " + part + " in stokes specification part " + parts[i]
     247             :                             + " does not match a known polarization."
     248             :                 );
     249           0 :         }
     250           0 :         return myStokes;
     251           0 : }
     252             : 
     253             : 
     254             : }

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