Line data Source code
1 : //# SIImageStore.cc: Implementation of Imager.h
2 : //# Copyright (C) 1997-2008
3 : //# Associated Universities, Inc. Washington DC, USA.
4 : //#
5 : //# This program is free software; you can redistribute it and/or modify it
6 : //# under the terms of the GNU General Public License as published by the Free
7 : //# Software Foundation; either version 2 of the License, or (at your option)
8 : //# any later version.
9 : //#
10 : //# This program is distributed in the hope that it will be useful, but WITHOUT
11 : //# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
12 : //# FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for
13 : //# more details.
14 : //#
15 : //# You should have received a copy of the GNU General Public License along
16 : //# with this program; if not, write to the Free Software Foundation, Inc.,
17 : //# 675 Massachusetts Ave, Cambridge, MA 02139, USA.
18 : //#
19 : //# Correspondence concerning AIPS++ should be addressed as follows:
20 : //# Internet email: casa-feedback@nrao.edu.
21 : //# Postal address: AIPS++ Project Office
22 : //# National Radio Astronomy Observatory
23 : //# 520 Edgemont Road
24 : //# Charlottesville, VA 22903-2475 USA
25 : //#
26 : //# $Id$
27 :
28 : #include <casacore/casa/Exceptions/Error.h>
29 : #include <iostream>
30 : #include <sstream>
31 :
32 : #include <casacore/casa/Arrays/Matrix.h>
33 : #include <casacore/casa/Arrays/ArrayMath.h>
34 : #include <casacore/casa/Arrays/ArrayLogical.h>
35 :
36 : #include <casacore/casa/Logging.h>
37 : #include <casacore/casa/Logging/LogIO.h>
38 : #include <casacore/casa/Logging/LogMessage.h>
39 : #include <casacore/casa/Logging/LogSink.h>
40 : #include <casacore/casa/Logging/LogMessage.h>
41 : #include <casacore/casa/OS/DirectoryIterator.h>
42 : #include <casacore/casa/OS/File.h>
43 : #include <casacore/casa/OS/Path.h>
44 : #include <casacore/lattices/Lattices/LatticeLocker.h>
45 : #include <casacore/casa/OS/HostInfo.h>
46 : #include <components/ComponentModels/GaussianDeconvolver.h>
47 : #include <casacore/images/Images/TempImage.h>
48 : #include <casacore/images/Images/PagedImage.h>
49 : #include <imageanalysis/ImageAnalysis/CasaImageBeamSet.h>
50 : #include <casacore/lattices/LatticeMath/LatticeMathUtil.h>
51 : #include <casacore/ms/MeasurementSets/MSHistoryHandler.h>
52 : #include <casacore/ms/MeasurementSets/MeasurementSet.h>
53 : #include <casacore/tables/Tables/TableUtil.h>
54 :
55 : #include <synthesis/ImagerObjects/SIImageStore.h>
56 : #include <synthesis/ImagerObjects/SDMaskHandler.h>
57 : #include <synthesis/TransformMachines/StokesImageUtil.h>
58 : #include <synthesis/TransformMachines2/Utils.h>
59 : #include <synthesis/ImagerObjects/SynthesisUtilMethods.h>
60 : #include <casacore/images/Images/ImageRegrid.h>
61 : #include <imageanalysis/ImageAnalysis/ImageStatsCalculator.h>
62 :
63 : //#include <imageanalysis/ImageAnalysis/ImageMaskedPixelReplacer.h>
64 :
65 : #include <sys/types.h>
66 : #include <unistd.h>
67 : #include "SIImageStore.h"
68 : using namespace std;
69 :
70 : using namespace casacore;
71 :
72 : namespace casa { //# NAMESPACE CASA - BEGIN
73 :
74 : //
75 : //===========================================================================
76 : // Global method that I (SB) could make work in SynthesisUtilsMethods.
77 : //
78 : template <class T>
79 0 : void openImage(const String& imagenamefull,std::shared_ptr<ImageInterface<T> >& imPtr )
80 : {
81 0 : LogIO logIO ( LogOrigin("SynthesisImager","openImage(name)") );
82 : try
83 : {
84 0 : if (Table::isReadable(imagenamefull))
85 0 : imPtr.reset( new PagedImage<T>( imagenamefull ) );
86 : }
87 0 : catch (AipsError &x)
88 : {
89 0 : logIO << "Error in reading image \"" << imagenamefull << "\"" << LogIO::EXCEPTION;
90 : }
91 0 : }
92 : //
93 : //--------------------------------------------------------------
94 : //
95 : template
96 : void openImage(const String& imagenamefull, std::shared_ptr<ImageInterface<Float> >& img );
97 : template
98 : void openImage(const String& imagenamefull, std::shared_ptr<ImageInterface<Complex> >& img );
99 : //
100 : //===========================================================================
101 :
102 :
103 : //////////////////////////////////////////////////////////////////////////////////////////////////////
104 : //////////////////////////////////////////////////////////////////////////////////////////////////////
105 : ///// START of SIIMAGESTORE implementation
106 : //////////////////////////////////////////////////////////////////////////////////////////////////////
107 :
108 : //////////////////////////////////////////////////////////////////////////////////////////////////////
109 :
110 58 : SIImageStore::SIImageStore()
111 : {
112 :
113 58 : itsPsf.reset( );
114 58 : itsModel.reset( );
115 58 : itsResidual.reset( );
116 58 : itsWeight.reset( );
117 58 : itsImage.reset( );
118 58 : itsMask.reset( );
119 58 : itsGridWt.reset( );
120 58 : itsPB.reset( );
121 58 : itsImagePBcor.reset();
122 58 : itsTempWorkIm.reset();
123 :
124 58 : itsSumWt.reset( );
125 58 : itsOverWrite = False;
126 58 : itsUseWeight = False;
127 58 : itsPBScaleFactor = 1.0;
128 :
129 58 : itsNFacets = 1;
130 58 : itsFacetId = 0;
131 58 : itsNChanChunks = 1;
132 58 : itsChanId = 0;
133 58 : itsNPolChunks = 1;
134 58 : itsPolId = 0;
135 :
136 58 : itsImageShape = IPosition(4,0,0,0,0);
137 58 : itsImageName = String("");
138 58 : itsCoordSys = CoordinateSystem();
139 58 : itsMiscInfo = Record();
140 :
141 58 : itsIsSingleDishStore = False;
142 :
143 58 : init();
144 : // validate();
145 :
146 58 : }
147 :
148 : // Used from SynthesisNormalizer::makeImageStore()
149 13 : SIImageStore::SIImageStore(
150 : const String &imagename,
151 : const CoordinateSystem &imcoordsys,
152 : const IPosition &imshape,
153 : const String &objectname,
154 : const Record &miscinfo,
155 : // const Int nfacets,
156 : const Bool /*overwrite*/,
157 : const Bool useweightimage,
158 : const Bool issingledishstore
159 13 : )
160 : // TODO : Add parameter to indicate weight image shape.
161 : {
162 26 : LogIO os( LogOrigin("SIImageStore","Open new Images",WHERE) );
163 :
164 :
165 13 : itsPsf.reset( );
166 13 : itsModel.reset( );
167 13 : itsResidual.reset( );
168 13 : itsWeight.reset( );
169 13 : itsImage.reset( );
170 13 : itsMask.reset( );
171 13 : itsGridWt.reset( );
172 13 : itsPB.reset( );
173 13 : itsImagePBcor.reset( );
174 13 : itsTempWorkIm.reset();
175 :
176 13 : itsSumWt.reset( );
177 13 : itsOverWrite = False; // Hard Coding this. See CAS-6937. overwrite;
178 13 : itsUseWeight = useweightimage;
179 13 : itsPBScaleFactor = 1.0;
180 :
181 13 : itsNFacets = 1;
182 13 : itsFacetId = 0;
183 13 : itsNChanChunks = 1;
184 13 : itsChanId = 0;
185 13 : itsNPolChunks = 1;
186 13 : itsPolId = 0;
187 :
188 13 : itsImageName = imagename;
189 13 : itsCoordSys = imcoordsys;
190 13 : itsImageShape = imshape;
191 13 : itsObjectName = objectname;
192 13 : itsMiscInfo = miscinfo;
193 :
194 13 : itsIsSingleDishStore = issingledishstore;
195 :
196 13 : init();
197 :
198 13 : validate();
199 13 : }
200 :
201 : // Used from SynthesisNormalizer::makeImageStore()
202 : // This constructor creates an Image Store from images on disk
203 19 : SIImageStore::SIImageStore(
204 : const String &imagename,
205 : const Bool ignorefacets,
206 : const Bool noRequireSumwt,
207 19 : const Bool makeSingleDishStore)
208 : {
209 38 : LogIO os( LogOrigin("SIImageStore","Open existing Images",WHERE) );
210 :
211 : { // Initialize some members
212 19 : itsImageName = imagename;
213 :
214 19 : itsPsf.reset( );
215 19 : itsModel.reset( );
216 19 : itsResidual.reset( );
217 19 : itsWeight.reset( );
218 19 : itsImage.reset( );
219 19 : itsMask.reset( );
220 19 : itsGridWt.reset( );
221 19 : itsPB.reset( );
222 19 : itsImagePBcor.reset( );
223 19 : itsTempWorkIm.reset();
224 19 : itsMiscInfo = Record();
225 :
226 19 : itsSumWt.reset( );
227 19 : itsNFacets = 1;
228 19 : itsFacetId = 0;
229 19 : itsNChanChunks = 1;
230 19 : itsChanId = 0;
231 19 : itsNPolChunks = 1;
232 19 : itsPolId = 0;
233 :
234 19 : itsOverWrite = False;
235 :
236 19 : itsIsSingleDishStore = makeSingleDishStore;
237 : }
238 :
239 : // Need to do this init now so that imageExts is initialized
240 19 : init();
241 :
242 : // Since this constructor creates an ImStore from images on disk,
243 : // it needs at least one of the images to actually be present on disk,
244 : // from which it can retrieve shape and coordsys information.
245 :
246 : { // Do we have at least 1 usable image ?
247 19 : constexpr SIImageStore::IMAGE_IDS imageIds[] = {
248 : SIImageStore::PSF,
249 : SIImageStore::RESIDUAL,
250 : SIImageStore::MODEL,
251 : SIImageStore::PB,
252 : SIImageStore::WEIGHT,
253 : SIImageStore::GRIDWT,
254 : };
255 :
256 19 : std::shared_ptr<ImageInterface<Float> > imptr;
257 :
258 19 : auto haveImage = False;
259 26 : for (auto imageId : imageIds) {
260 26 : const auto imageName = imageFullName(imageId);
261 26 : if (doesImageExist(imageName)) {
262 19 : if (imageId == SIImageStore::GRIDWT) {
263 0 : constexpr auto preserveOldComment = True;
264 : // How can this be right ?
265 : }
266 19 : buildImage(imptr, imageName);
267 19 : haveImage = True;
268 19 : break;
269 : }
270 26 : }
271 :
272 19 : if (haveImage) {
273 19 : itsObjectName = imptr->imageInfo().objectName();
274 19 : itsImageShape = imptr->shape();
275 19 : itsCoordSys = imptr->coordinates();
276 19 : itsMiscInfo = imptr->miscInfo();
277 : } else {
278 0 : String errMsg;
279 0 : if (not itsIsSingleDishStore) {
280 : errMsg = "PSF, Residual, Model Image (or sumwt) do not exist."
281 0 : " Please create one of them.";
282 : } else {
283 0 : errMsg = String("Single-dish image and single-dish weight image"
284 : " do not exist. Please create one of:\n")
285 0 : + imageFullName(SIImageStore::RESIDUAL) + "\nor\n"
286 0 : + imageFullName(SIImageStore::WEIGHT);
287 : }
288 0 : throw AipsError(errMsg);
289 0 : }
290 19 : }
291 :
292 : { // Handle special case: psf or residual exist
293 : // Should we update things here when itsIsSingleDishStore = True ?
294 19 : if ( doesImageExist( imageFullName(RESIDUAL) )
295 19 : or doesImageExist( imageFullName(PSF) ) ) {
296 19 : if ( doesImageExist( imageFullName(SUMWT)) ) {
297 18 : std::shared_ptr<ImageInterface<Float> > imptr;
298 18 : buildImage(imptr, imageFullName(SUMWT) );
299 18 : itsNFacets = imptr->shape()[0];
300 18 : itsFacetId = 0;
301 18 : itsUseWeight = getUseWeightImage( *imptr );
302 18 : itsPBScaleFactor = 1.0; // No need to set properly here
303 : // as it will be calc'd in ()
304 : // Redo this here as psf may have different coordinates
305 18 : itsCoordSys = imptr->coordinates();
306 18 : itsMiscInfo =imptr->miscInfo();
307 36 : if ( itsUseWeight
308 18 : and not doesImageExist( imageFullName(WEIGHT) ) ) {
309 0 : throw AipsError(
310 : "Internal error : Sumwt has a useweightimage=True"
311 : " but the weight image does not exist."
312 0 : );
313 : }
314 18 : } else {
315 1 : if (not noRequireSumwt) { // .sumwt image required?
316 : // -> probably not for just the minor cycle (aka task deconvolve)
317 0 : throw AipsError(
318 : "SumWt information does not exist."
319 : " Please create either a PSF or Residual"
320 0 : );
321 : } else {
322 : os << "SumWt does not exist. Proceeding only with PSF"
323 1 : << LogIO::POST;
324 1 : std::shared_ptr<ImageInterface<Float> > imptr;
325 1 : if ( doesImageExist( imageFullName(RESIDUAL) ) ) {
326 1 : buildImage(imptr, imageFullName(RESIDUAL) );
327 : }
328 : else {
329 0 : buildImage(imptr, imageFullName(PSF) );
330 : }
331 :
332 1 : itsNFacets = 1;
333 1 : itsFacetId = 0;
334 1 : itsUseWeight = False;
335 1 : itsPBScaleFactor = 1.0;
336 1 : itsCoordSys = imptr->coordinates();
337 1 : itsMiscInfo = imptr->miscInfo();
338 1 : }
339 : }
340 : } // if psf or residual exist
341 : } // Handle special case
342 :
343 19 : if (ignorefacets == True) itsNFacets = 1;
344 :
345 : // Why again ?
346 19 : init();
347 :
348 19 : validate();
349 19 : }
350 :
351 : // used from getSubImageStore(), for example when creating the facets list
352 : // this would be safer if it was refactored as a copy constructor of the generic stuff +
353 : // initialization of the facet related parameters
354 0 : SIImageStore::SIImageStore(const std::shared_ptr<ImageInterface<Float> > &modelim,
355 : const std::shared_ptr<ImageInterface<Float> > &residim,
356 : const std::shared_ptr<ImageInterface<Float> > &psfim,
357 : const std::shared_ptr<ImageInterface<Float> > &weightim,
358 : const std::shared_ptr<ImageInterface<Float> > &restoredim,
359 : const std::shared_ptr<ImageInterface<Float> > &maskim,
360 : const std::shared_ptr<ImageInterface<Float> > &sumwtim,
361 : const std::shared_ptr<ImageInterface<Float> > &gridwtim,
362 : const std::shared_ptr<ImageInterface<Float> > &pbim,
363 : const std::shared_ptr<ImageInterface<Float> > &restoredpbcorim,
364 : const std::shared_ptr<ImageInterface<Float> > & tempworkimage,
365 : const CoordinateSystem &csys,
366 : const IPosition &imshape,
367 : const String &imagename,
368 : const String &objectname,
369 : const Record &miscinfo,
370 : const Int facet, const Int nfacets,
371 : const Int chan, const Int nchanchunks,
372 : const Int pol, const Int npolchunks,
373 0 : const Bool useweightimage)
374 : {
375 :
376 :
377 0 : itsPsf=psfim;
378 0 : itsModel=modelim;
379 0 : itsResidual=residim;
380 : /* if(residim){
381 : LatticeLocker lock1(*itsResidual, FileLocker::Read);
382 : cerr << "RESIDMAX " << max(itsResidual->get()) << " " << max(residim->get()) << endl;
383 : }*/
384 0 : itsWeight=weightim;
385 0 : itsImage=restoredim;
386 0 : itsMask=maskim;
387 :
388 0 : itsSumWt=sumwtim;
389 :
390 0 : itsGridWt=gridwtim;
391 0 : itsPB=pbim;
392 0 : itsImagePBcor=restoredpbcorim;
393 0 : itsTempWorkIm=tempworkimage;
394 :
395 0 : itsPBScaleFactor=1.0;// No need to set properly here as it will be computed in makePSF.
396 :
397 0 : itsObjectName = objectname;
398 0 : itsMiscInfo = miscinfo;
399 :
400 0 : itsNFacets = nfacets;
401 0 : itsFacetId = facet;
402 0 : itsNChanChunks = nchanchunks;
403 0 : itsChanId = chan;
404 0 : itsNPolChunks = npolchunks;
405 0 : itsPolId = pol;
406 :
407 0 : itsOverWrite=False;
408 0 : itsUseWeight=useweightimage;
409 :
410 0 : itsParentImageShape = imshape;
411 0 : itsImageShape = imshape;
412 :
413 0 : itsParentCoordSys = csys;
414 0 : itsCoordSys = csys; // Hopefully this doesn't change for a reference image
415 0 : itsImageName = imagename;
416 :
417 0 : itsIsSingleDishStore = False;
418 :
419 : //-----------------------
420 0 : init(); // Connect parent pointers to the images.
421 : //-----------------------
422 :
423 : // Set these to null, to be set later upon first access.
424 0 : itsPsf.reset( );
425 0 : itsModel.reset( );
426 0 : itsResidual.reset( );
427 0 : itsWeight.reset( );
428 0 : itsImage.reset( );
429 0 : itsMask.reset( );
430 0 : itsSumWt.reset( );
431 0 : itsPB.reset( );
432 :
433 0 : validate();
434 0 : }
435 :
436 60 : void SIImageStore::validate()
437 : {
438 : // There are two valid states. Check for at least one of them.
439 60 : Bool inValidState = False;
440 :
441 60 : stringstream oss;
442 : { // Initialize error message
443 : oss
444 60 : << "shape:" << itsImageShape
445 60 : << " parentimageshape:" << itsParentImageShape
446 60 : << " nfacets:" << itsNFacets << "x" << itsNFacets
447 60 : << " facetid:" << itsFacetId
448 60 : << " nchanchunks:" << itsNChanChunks << " chanid:" << itsChanId
449 60 : << " npolchunks:" << itsNPolChunks << " polid:" << itsPolId
450 60 : << " coord-dim:" << itsCoordSys.nPixelAxes()
451 60 : << " psf/res:" << (hasPsf() or hasResidual());
452 60 : if ( hasSumWt() ) oss << " sumwtshape : " << sumwt()->shape();
453 60 : oss << endl;
454 : }
455 :
456 : try {
457 :
458 60 : if ( itsCoordSys.nPixelAxes() != 4 ) inValidState = False;
459 :
460 : // (1) Regular imagestore
461 60 : if (
462 60 : itsNFacets == 1 and itsFacetId == 0
463 60 : and itsNChanChunks == 1 and itsChanId == 0
464 60 : and itsNPolChunks == 1 and itsPolId == 0 ) {
465 60 : Bool sumWtShapeOK = hasSumWt() and sumwt()->shape()[0] == 1;
466 60 : if ( itsImageShape.isEqual(itsParentImageShape)
467 60 : and ( sumWtShapeOK or not hasSumWt() )
468 120 : and itsParentImageShape.product() > 0 ) inValidState = True;
469 60 : }
470 : // (2) Reference Sub Imagestore
471 0 : else if (
472 0 : ( itsNFacets > 1 and itsFacetId >= 0 )
473 0 : or ( itsNChanChunks > 1 and itsChanId >= 0 )
474 0 : or ( itsNPolChunks > 1 and itsPolId >= 0 ) ) {
475 : // If shape is still unset, even when the first image has been made....
476 : Bool imgShapeOK1 =
477 0 : ( itsImageShape.product() > 0 and ( hasPsf() or hasResidual() ) );
478 : Bool imgShapeOK2 =
479 0 : ( itsImageShape.isEqual(IPosition(4,0,0,0,0)) and
480 0 : ( not hasPsf() and not hasResidual() )
481 0 : );
482 0 : Bool imgShapeOK = imgShapeOK1 or imgShapeOK2;
483 : Bool sumWtShapeOK =
484 0 : hasSumWt() and sumwt()->shape()[0] == 1; // One facet only.
485 :
486 0 : if ( imgShapeOK and ( itsParentImageShape.product() > 0 )
487 0 : and ( itsFacetId < itsNFacets*itsNFacets )
488 : // and (itsChanId<=itsNChanChunks) // chanchunks can be larger...
489 0 : and ( itsPolId < itsNPolChunks )
490 0 : and ( sumWtShapeOK or not hasSumWt() ) ) inValidState = True;
491 : }
492 :
493 : }
494 0 : catch ( AipsError &err ) {
495 0 : inValidState = False;
496 0 : oss << " ||||| " << err.getMesg() << endl;
497 0 : }
498 :
499 60 : if ( not inValidState ) {
500 0 : throw AipsError(
501 0 : "Internal Error : Invalid ImageStore state : " + oss.str()
502 0 : );
503 : }
504 :
505 60 : }
506 :
507 :
508 : //////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
509 :
510 0 : std::shared_ptr<SIImageStore> SIImageStore::getSubImageStore(const Int facet, const Int nfacets,
511 : const Int chan, const Int nchanchunks,
512 : const Int pol, const Int npolchunks)
513 : {
514 :
515 0 : return std::make_shared<SIImageStore>(itsModel, itsResidual, itsPsf, itsWeight, itsImage, itsMask, itsSumWt, itsGridWt, itsPB, itsImagePBcor, itsTempWorkIm, itsCoordSys, itsImageShape, itsImageName, itsObjectName, itsMiscInfo, facet, nfacets, chan, nchanchunks, pol, npolchunks, itsUseWeight);
516 : }
517 :
518 : /////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
519 : //// Either read an image from disk, or construct one.
520 :
521 315 : std::shared_ptr<ImageInterface<Float> > SIImageStore::openImage(const String imagenamefull,
522 : const Bool overwrite,
523 : const Bool dosumwt, const Int nfacetsperside, const Bool checkCoordSys)
524 : {
525 :
526 :
527 315 : std::shared_ptr<ImageInterface<Float> > imPtr;
528 315 : IPosition useShape( itsParentImageShape );
529 :
530 315 : if( dosumwt ) // change shape to sumwt image shape.
531 : {
532 37 : useShape[0] = nfacetsperside;
533 37 : useShape[1] = nfacetsperside;
534 : // cout << "openImage : Making sumwt grid : using shape : " << useShape << endl;
535 : }
536 :
537 : // overwrite=False; /// HARD CODING THIS. See CAS-6937.
538 :
539 : // cout << "Open image : " << imagenamefull << " useShape : " << useShape << endl;
540 :
541 : // if image exists
542 : // if overwrite=T
543 : // try to make new image
544 : // if not, try to open existing image
545 : // if cannot, complain.
546 : // if overwrite=F
547 : // try to open existing image
548 : // if cannot, complain
549 : // if image does not exist
550 : // try to make new image
551 : // if cannot, complain
552 315 : Bool dbg=False;
553 315 : if( doesImageExist( imagenamefull ) )
554 : {
555 : ///// not used since itsOverWrite is hardcoded to FALSE (CAS-6937)
556 232 : if (overwrite) //overwrite and make new image
557 : {
558 0 : if(dbg) cout << "Trying to overwrite and open new image named : " << imagenamefull << " ow:"<< overwrite << endl;
559 : try{
560 0 : buildImage(imPtr, useShape, itsParentCoordSys, imagenamefull) ;
561 0 : LatticeLocker lock1(*imPtr, FileLocker::Write);
562 : // initialize to zeros...
563 0 : imPtr->set(0.0);
564 0 : }
565 0 : catch (AipsError &x){
566 0 : if(dbg)cout << "Cannot overwrite : " << x.getMesg() << endl;
567 0 : if(dbg)cout << "Open already ? : " << Table::isOpened( imagenamefull ) << " Writable ? : " << Table::isWritable( imagenamefull ) << endl;
568 0 : if(Table::isWritable( imagenamefull ))
569 : {
570 0 : if(dbg) cout << "--- Trying to open existing image : "<< imagenamefull << endl;
571 : try{
572 0 : buildImage( imPtr, imagenamefull );
573 : }
574 0 : catch (AipsError &x){
575 0 : throw( AipsError("Writable table exists, but cannot open : " + x.getMesg() ) );
576 0 : }
577 : }// is table writable
578 : else
579 : {
580 0 : throw( AipsError("Cannot overwrite existing image. : " + x.getMesg() ) );
581 : }
582 0 : }
583 : }// overwrite existing image
584 : else // open existing image ( Always tries this )
585 : {
586 : if(1) //Table::isWritable( imagenamefull ))
587 : {
588 232 : if(dbg) cout << "Trying to open existing image : "<< imagenamefull << endl;
589 : try{
590 232 : buildImage( imPtr, imagenamefull ) ;
591 :
592 232 : if( !dosumwt)
593 : {
594 : //cout << useShape << " and " << imPtr->shape() << " ---- " << useShape.product() << " : " << itsCoordSys.nCoordinates() << endl;
595 : // Check if coordsys and shape of this image are consistent with current ones (if filled)
596 :
597 211 : if( useShape.product()>0 && ! useShape.isEqual( imPtr->shape() ) )
598 : {
599 0 : ostringstream oo1,oo2;
600 0 : oo1 << useShape; oo2 << imPtr->shape();
601 0 : throw( AipsError( "There is a shape mismatch between existing images ("+oo2.str()+") and current parameters ("+oo1.str()+"). If you are attempting to restart a run with a new image shape, please change imagename and supply the old model or mask as inputs (via the startmodel or mask parameters) so that they can be regridded to the new shape before continuing." ) );
602 0 : }
603 :
604 :
605 :
606 211 : if( itsParentCoordSys.nCoordinates()>0 && checkCoordSys && ! itsParentCoordSys.near( imPtr->coordinates()) )
607 : {
608 : /// Implement an exception to get CAS-9977 to work. Modify the current coordsys to match the parent.
609 : /// "The DirectionCoordinates have differing latpoles"
610 0 : if( itsParentCoordSys.errorMessage().contains("differing latpoles") )
611 : {
612 0 : DirectionCoordinate dcord = itsParentCoordSys.directionCoordinate();
613 : //cout << "Latpole from parent : " << dcord.longLatPoles() << endl;
614 :
615 0 : DirectionCoordinate dcord2 = imPtr->coordinates().directionCoordinate();
616 : //cout << "Latpole from imPtr : " << dcord2.longLatPoles() << endl;
617 :
618 0 : LogIO os( LogOrigin("SIImageStore","Open existing Images",WHERE) );
619 0 : os << " Mismatch in Csys latpoles between existing image on disk (" << dcord2.longLatPoles() << ") and current imaging run (" << dcord.longLatPoles() << ") : " << itsParentCoordSys.errorMessage() << " -- Resetting to match image on disk" << LogIO::WARN << LogIO::POST;
620 : // cout << "Set the coordinate from the Parent value" << endl;
621 : //imPtr->setCoordinateInfo( itsParentCoordSys );
622 0 : itsParentCoordSys = imPtr->coordinates();
623 0 : }
624 :
625 : // Check again.
626 0 : if ( ! itsParentCoordSys.near( imPtr->coordinates() ) )
627 : {
628 : //cout << " Still different..." << endl;
629 0 : throw( AipsError( "There is a coordinate system mismatch between existing images on disk and current parameters ("+itsParentCoordSys.errorMessage()+"). If you are attempting to restart a run, please change imagename and supply the old model or mask as inputs (via the startmodel or mask parameters) so that they can be regridded to the new coordinate system before continuing. " ) );
630 : }
631 : //}
632 : }
633 : }// not dosumwt
634 : }
635 0 : catch (AipsError &x){
636 0 : throw( AipsError("Cannot open existing image : "+imagenamefull+" : " + x.getMesg() ) );
637 0 : }
638 : }// is table writable
639 : else // table exists but not writeable
640 : {
641 : if(dbg)cout << "Table exists but not writeable : " << imagenamefull << " --- Open : " << Table::isOpened( imagenamefull ) << endl;
642 : throw( AipsError("Image exists but not able to open for writes :"+imagenamefull+ ". Opened elsewhere : " + String::toString(Table::isOpened(imagenamefull))) );
643 : }
644 : }// open existing image
645 : }// if image exists
646 : else // image doesn't exist. make new one
647 : {
648 83 : if(dbg) cout << "Trying to open new image named : " << imagenamefull << endl;
649 : try{
650 83 : buildImage(imPtr, useShape, itsParentCoordSys, imagenamefull) ;
651 : // initialize to zeros...
652 : {
653 83 : LatticeLocker lock1(*imPtr, FileLocker::Write);
654 83 : imPtr->set(0.0);
655 83 : imPtr->flush();
656 83 : imPtr->unlock();
657 83 : }
658 : }
659 0 : catch (AipsError &x){
660 0 : throw( AipsError("Cannot make new image. : " + x.getMesg() ) );
661 0 : }
662 : }
663 :
664 :
665 : //////////////////////////////////////
666 : /*
667 : if( overwrite || !Table::isWritable( imagenamefull ) )
668 : {
669 : cout << "Trying to open new image named : " << imagenamefull << " ow:"<< overwrite << endl;
670 : imPtr.reset( new PagedImage<Float> (useShape, itsCoordSys, imagenamefull) );
671 : // initialize to zeros...
672 : imPtr->set(0.0);
673 : }
674 : else
675 : {
676 : if(Table::isWritable( imagenamefull ))
677 : {
678 : cout << "Trying to open existing image : "<< imagenamefull << endl;
679 : try{
680 : imPtr.reset( new PagedImage<Float>( imagenamefull ) );
681 : }
682 : catch (AipsError &x){
683 : cerr << "Writable table exists, but cannot open. Creating temp image. : " << x.getMesg() << endl;
684 : imPtr.reset( new TempImage<Float> (useShape, itsCoordSys) );
685 : // imPtr=new PagedImage<Float> (useShape, itsCoordSys, imagenamefull);
686 : imPtr->set(0.0);
687 : }
688 : }
689 : else
690 : {
691 : cerr << "Table " << imagenamefull << " is not writeable. Creating temp image." << endl;
692 : imPtr.reset( new TempImage<Float> (useShape, itsCoordSys) );
693 : imPtr->set(0.0);
694 : }
695 : }
696 : */
697 630 : return imPtr;
698 315 : }
699 :
700 83 : void SIImageStore::buildImage(std::shared_ptr<ImageInterface<Float> > &imptr, IPosition shape,
701 : CoordinateSystem csys, const String name)
702 : {
703 166 : LogIO os( LogOrigin("SIImageStore", "Open non-existing image", WHERE) );
704 83 : os <<"Opening image, name: " << name << LogIO::DEBUG1;
705 :
706 83 : itsOpened++;
707 : //For some reason cannot open a new paged image with UserNoread directly
708 : {
709 83 : PagedImage<Float> godot(shape, csys, name);
710 83 : godot.unlock();
711 83 : }
712 83 : TableLock::LockOption locktype=TableLock::AutoNoReadLocking;
713 : //TableLock::LockOption locktype=TableLock::UserLocking;
714 : /*if((name.contains(imageExts(PSF)) && !name.contains(imageExts(PSF)+".tt"))|| (name.contains(imageExts(RESIDUAL))&& !name.contains(imageExts(RESIDUAL)+".tt")) || (name.contains(imageExts(SUMWT)) && !name.contains(imageExts(SUMWT)+".tt"))){
715 : locktype=TableLock::UserNoReadLocking;
716 : }*/
717 83 : imptr.reset( new PagedImage<Float> (name, locktype) );
718 : {
719 83 : LatticeLocker lock1(*imptr, FileLocker::Write);
720 83 : initMetaInfo(imptr, name);
721 83 : imptr->unlock();
722 83 : }
723 : /*
724 : Int MEMFACTOR = 18;
725 : Double memoryMB=HostInfo::memoryTotal(True)/1024/(MEMFACTOR*itsOpened);
726 :
727 :
728 : TempImage<Float> *tptr = new TempImage( TiledShape(shape, tileShape()), csys, memoryBeforeLattice() ) ;
729 :
730 : tptr->setMaximumCacheSize(shape.product());
731 : tptr->cleanCache();
732 :
733 : imptr.reset( tptr );
734 :
735 : */
736 83 : }
737 :
738 280 : void SIImageStore::buildImage(std::shared_ptr<ImageInterface<Float> > &imptr, const String name)
739 : {
740 560 : LogIO os(LogOrigin("SIImageStore", "Open existing Images", WHERE));
741 280 : os <<"Opening image, name: " << name << LogIO::DEBUG1;
742 :
743 280 : itsOpened++;
744 280 : if ( Table::isReadable(name) ) {
745 280 : TableLock::LockOption locktype=TableLock::AutoNoReadLocking;
746 : /* if (
747 : ( name.contains(imageExts(PSF)) and
748 : not name.contains(imageExts(PSF) + ".tt")
749 : ) or
750 : ( name.contains(imageExts(RESIDUAL)) and
751 : not name.contains(imageExts(RESIDUAL)+".tt")
752 : ) or
753 : ( name.contains(imageExts(SUMWT)) and
754 : not name.contains(imageExts(SUMWT)+".tt")
755 : )
756 : ) {
757 : locktype=TableLock::UserNoReadLocking;
758 : }
759 : */
760 280 : Table table(name, locktype);
761 280 : String type = table.tableInfo().type();
762 280 : if ( type != TableInfo::type(TableInfo::PAGEDIMAGE) ) {
763 :
764 0 : imptr.reset( new PagedImage<Float>( table ) );
765 0 : imptr->unlock();
766 0 : return;
767 : }
768 280 : }
769 :
770 280 : LatticeBase* latt =ImageOpener::openImage(name);
771 280 : if (not latt) {
772 0 : throw AipsError("Error in opening Image : "+name);
773 : }
774 280 : DataType dtype = latt->dataType();
775 280 : if (dtype == TpFloat) {
776 280 : imptr.reset(dynamic_cast<ImageInterface<Float>* >(latt));
777 : } else {
778 0 : throw AipsError( "Need image to have float values : "+name);
779 : }
780 :
781 : /*
782 : std::shared_ptr<casacore::ImageInterface<Float> > fim;
783 : std::shared_ptr<casacore::ImageInterface<Complex> > cim;
784 :
785 : std::tie(fim , cim)=ImageFactory::fromFile(name);
786 : if (fim) {
787 : imptr.reset(
788 : dynamic_cast<std::shared_ptr<casacore::ImageInterface<Float> > >(*fim)
789 : );
790 : } else {
791 : throw AipsError("Cannot open with ImageFactory : "+name);
792 : }
793 : */
794 :
795 : /*
796 : IPosition cimageShape;
797 : CoordinateSystem cimageCoord = StokesImageUtil::CStokesCoord(
798 : itsCoordSys,
799 : whichStokes,
800 : itsDataPolRep
801 : );
802 : */
803 :
804 280 : }
805 :
806 : /**
807 : * Sets ImageInfo and MiscInfo on an image
808 : *
809 : * @param imptr image to initialize
810 : */
811 83 : void SIImageStore::initMetaInfo(std::shared_ptr<ImageInterface<Float> > &imptr,
812 : const String name)
813 : {
814 : // Check objectname, as one of the mandatory fields. What this is meant to check is -
815 : // has the metainfo been initialized? If not, grab info from associated PSF
816 83 : LatticeLocker lock1(*imptr, FileLocker::Write);
817 83 : if (not itsObjectName.empty()) {
818 83 : ImageInfo info = imptr->imageInfo();
819 83 : info.setObjectName(itsObjectName);
820 83 : imptr->setImageInfo(info);
821 83 : imptr->setMiscInfo(itsMiscInfo);
822 83 : } else if (std::string::npos == name.find(imageExts(PSF))) {
823 0 : auto srcImg = psf(0);
824 0 : if (nullptr != srcImg) {
825 0 : imptr->setImageInfo(srcImg->imageInfo());
826 0 : imptr->setMiscInfo(srcImg->miscInfo());
827 : }
828 0 : }
829 83 : imptr->unlock();
830 83 : }
831 :
832 :
833 : /////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
834 0 : void SIImageStore::setMiscInfo(const Record miscinfo)
835 : {
836 0 : itsMiscInfo = miscinfo;
837 0 : }
838 :
839 0 : void SIImageStore::setObjectName(const String name)
840 : {
841 0 : itsObjectName = name;
842 0 : }
843 :
844 : /////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
845 :
846 253 : std::shared_ptr<ImageInterface<Float> > SIImageStore::makeSubImage(const Int facet, const Int nfacets,
847 : const Int chan, const Int nchanchunks,
848 : const Int pol, const Int npolchunks,
849 : ImageInterface<Float>& image)
850 : {
851 : //assuming n x n facets
852 253 : Int nx_facets=Int(sqrt(Double(nfacets)));
853 506 : LogIO os( LogOrigin("SynthesisImager","makeFacet") );
854 : // Make the output image
855 253 : Slicer imageSlicer;
856 :
857 : // Add checks for all dimensions..
858 253 : if((facet>(nfacets-1))||(facet<0)) {
859 0 : os << LogIO::SEVERE << "Illegal facet " << facet << LogIO::POST;
860 0 : return std::shared_ptr<ImageInterface<Float> >();
861 : }
862 253 : IPosition imshp=image.shape();
863 253 : IPosition blc(imshp.nelements(), 0);
864 253 : IPosition trc=imshp-1;
865 253 : IPosition inc(imshp.nelements(), 1);
866 :
867 : /// Facets
868 253 : Int facetx = facet % nx_facets;
869 253 : Int facety = (facet - facetx) / nx_facets;
870 253 : Int sizex = imshp(0) / nx_facets;
871 253 : Int sizey = imshp(1) / nx_facets;
872 253 : blc(1) = facety * sizey;
873 253 : trc(1) = blc(1) + sizey - 1;
874 253 : blc(0) = facetx * sizex;
875 253 : trc(0) = blc(0) + sizex - 1;
876 :
877 : /// Pol Chunks
878 253 : Int sizepol = imshp(2) / npolchunks;
879 253 : blc(2) = pol * sizepol;
880 253 : trc(2) = blc(2) + sizepol - 1;
881 :
882 : /// Chan Chunks
883 253 : Int sizechan = imshp(3) / nchanchunks;
884 253 : blc(3) = chan * sizechan;
885 253 : trc(3) = blc(3) + sizechan - 1;
886 :
887 253 : LCBox::verify(blc, trc, inc, imshp);
888 253 : Slicer imslice(blc, trc, inc, Slicer::endIsLast);
889 :
890 : // Now create the sub image
891 253 : std::shared_ptr<ImageInterface<Float> > referenceImage( new SubImage<Float>(image, imslice, True) );
892 : {
893 253 : LatticeLocker lock1(*referenceImage, FileLocker::Write);
894 253 : referenceImage->setMiscInfo(image.miscInfo());
895 253 : referenceImage->setUnits(image.units());
896 :
897 253 : }
898 :
899 : // cout << "Made Ref subimage of shape : " << referenceImage->shape() << endl;
900 :
901 253 : return referenceImage;
902 :
903 253 : }
904 :
905 :
906 :
907 : //////////////////////////////////////////////////////////////////////////////////////////////////////
908 :
909 109 : SIImageStore::~SIImageStore()
910 : {
911 109 : }
912 :
913 : //////////////////////////////////////////////////////////////////////////////////////////////////////
914 : //////////////////////////////////////////////////////////////////////////////////////////////////////
915 :
916 114 : Bool SIImageStore::releaseLocks()
917 : {
918 : //LogIO os( LogOrigin("SIImageStore","releaseLocks",WHERE) );
919 :
920 : // String fname( itsImageName+String(".info") );
921 : // makePersistent( fname );
922 :
923 114 : if( itsPsf ) releaseImage( itsPsf );
924 114 : if( itsModel ) { releaseImage( itsModel ); }
925 114 : if( itsResidual ) releaseImage( itsResidual );
926 114 : if( itsImage ) releaseImage( itsImage );
927 114 : if( itsWeight ) releaseImage( itsWeight );
928 114 : if( itsMask ) releaseImage( itsMask );
929 114 : if( itsSumWt ) releaseImage( itsSumWt );
930 114 : if( itsGridWt ) releaseImage( itsGridWt );
931 114 : if( itsPB ) releaseImage( itsPB );
932 114 : if( itsImagePBcor ) releaseImage( itsImagePBcor );
933 :
934 114 : return True; // do something more intelligent here.
935 : }
936 :
937 0 : Bool SIImageStore::releaseComplexGrids()
938 : {
939 : //LogIO os( LogOrigin("SIImageStore","releaseComplexGrids",WHERE) );
940 :
941 0 : if( itsForwardGrid ) releaseImage( itsForwardGrid );
942 0 : if( itsBackwardGrid ) releaseImage( itsBackwardGrid );
943 :
944 0 : return True; // do something more intelligent here.
945 : }
946 :
947 261 : void SIImageStore::releaseImage( std::shared_ptr<ImageInterface<Float> > &im )
948 : {
949 : //cerr << this << " releaseimage " << im.get() << endl;
950 : //LogIO os( LogOrigin("SIImageStore","releaseLocks",WHERE) );
951 261 : im->flush();
952 : //os << LogIO::WARN << "clear cache" << LogIO::POST;
953 261 : im->clearCache();
954 : //os << LogIO::WARN << "unlock" << LogIO::POST;
955 261 : im->unlock();
956 : //os << LogIO::WARN << "tempClose" << LogIO::POST;
957 : //im->tempClose();
958 : //os << LogIO::WARN << "NULL" << LogIO::POST;
959 261 : im.reset(); // This was added to allow modification by modules independently
960 261 : }
961 :
962 0 : void SIImageStore::releaseImage( std::shared_ptr<ImageInterface<Complex> > &im )
963 : {
964 0 : im->tempClose();
965 0 : }
966 :
967 : //////////////////////////////////////////////////////////////////////////////////////////////////////
968 : //////////////////////////////////////////////////////////////////////////////////////////////////////
969 0 : Vector<String> SIImageStore::getModelImageName()
970 : {
971 0 : Vector<String> mods(1);
972 0 : mods[0]=itsImageName + imageExts(MODEL);
973 0 : return mods;
974 0 : }
975 :
976 5 : Long SIImageStore::estimateRAM(){
977 : //right now this is estimated at 2MB for the 2 complex lattices;
978 5 : return Long(2000);
979 : }
980 0 : void SIImageStore::setModelImage( const Vector<String> &modelnames)
981 : {
982 0 : LogIO os( LogOrigin("SIImageStore","setModelImage",WHERE) );
983 :
984 0 : if( modelnames.nelements() > 1 )
985 0 : {throw( AipsError("Multiple starting model images are currently not supported. Please merge them before supplying as input to startmodel"));
986 : /// If needed, THIS is the place to add code to support lists of model images... perhaps regrid separately and add them up or some such thing.
987 : }
988 :
989 0 : if( modelnames.nelements()==1 ) { setModelImageOne( modelnames[0] ); }
990 0 : }
991 :
992 :
993 :
994 0 : void SIImageStore::setModelImageOne( const String &modelname , Int nterm)
995 : {
996 0 : LogIO os( LogOrigin("SIImageStore","setModelImageOne",WHERE) );
997 :
998 0 : if(modelname==String("")) return;
999 :
1000 0 : Bool multiterm=False;
1001 0 : if(nterm>-1)multiterm=True;
1002 0 : if(nterm==-1)nterm=0;
1003 :
1004 0 : Directory immodel( modelname ); // +String(".model") );
1005 0 : if( !immodel.exists() )
1006 : {
1007 0 : os << "Starting model image " << modelname << " does not exist. No initial prediction will be done" << ((multiterm)?String(" for term")+String::toString(nterm) :"") << LogIO::POST;
1008 0 : return;
1009 : }
1010 :
1011 : // master merge 2019.01.08 - leaving in the commnets for now but clean up after it is verified
1012 : //SHARED_PTR<PagedImage<Float> > newmodel( new PagedImage<Float>( modelname ) ); //+String(".model") ) );
1013 : //SHARED_PTR<ImageInterface<Float> > newmodel;
1014 0 : std::shared_ptr<ImageInterface<Float> > newmodel;
1015 0 : buildImage(newmodel, modelname);
1016 : // in master
1017 : //std::shared_ptr<PagedImage<Float> > newmodel( new PagedImage<Float>( modelname ) ); //+String(".model") ) );
1018 :
1019 0 : Bool hasMask = newmodel->isMasked(); /// || newmodel->hasPixelMask() ;
1020 :
1021 0 : if( hasMask )
1022 : {
1023 :
1024 0 : os << "Input startmodel has an internal mask. Setting masked pixels to zero" << LogIO::POST;
1025 :
1026 : try {
1027 :
1028 : ////// Neat function to replace masked pixels, but it will do it in-place.
1029 : ////// We need to not modify the input model on disk, but apply the mask only OTF before
1030 : ////// regridding to the target image,.
1031 : // ImageMaskedPixelReplacer<Float> impr( newmodel, 0, "" );
1032 : // impr.replace("0", False, False );
1033 :
1034 :
1035 0 : TempImage<Float> maskmodel( newmodel->shape(), newmodel->coordinates() );
1036 0 : IPosition inshape = newmodel->shape();
1037 0 : for(Int pol=0; pol<inshape[2]; pol++)
1038 : {
1039 0 : for(Int chan=0; chan<inshape[3]; chan++)
1040 : {
1041 0 : IPosition pos(4,0,0,pol,chan);
1042 : std::shared_ptr<ImageInterface<Float> > subim=makeSubImage(0,1,
1043 0 : chan, inshape[3],
1044 0 : pol, inshape[2],
1045 0 : (*newmodel) );
1046 :
1047 : std::shared_ptr<ImageInterface<Float> > submaskmodel=makeSubImage(0,1,
1048 0 : chan, inshape[3],
1049 0 : pol, inshape[2],
1050 0 : maskmodel );
1051 :
1052 0 : ArrayLattice<Bool> pixmask( subim->getMask() );
1053 0 : LatticeExpr<Float> masked( (*subim) * iif(pixmask,1.0,0.0) );
1054 0 : submaskmodel->copyData( masked );
1055 0 : }
1056 : }
1057 :
1058 :
1059 :
1060 : // Check shapes, coordsys with those of other images. If different, try to re-grid here.
1061 0 : if( (newmodel->shape() != model(nterm)->shape()) || (! itsCoordSys.near(newmodel->coordinates() )) )
1062 : {
1063 0 : os << "Regridding input model " << modelname << " to target coordinate system for " << itsImageName << ".model" << ((multiterm)?".tt"+String::toString(nterm) :"") << LogIO::POST;
1064 0 : regridToModelImage( maskmodel, nterm );
1065 : }
1066 : else
1067 : {
1068 0 : os << "Copying input model " << modelname << " to " << itsImageName << ".model" << ((multiterm)?".tt"+String::toString(nterm) :"") << LogIO::POST;
1069 0 : model(nterm)->copyData( LatticeExpr<Float> (maskmodel) );
1070 : }
1071 :
1072 :
1073 0 : } catch (AipsError &x) {
1074 0 : throw(AipsError("Setting masked pixels to zero for input startmodel : "+ x.getMesg()));
1075 0 : }
1076 :
1077 : }// hasMask
1078 : else // nomask
1079 : {
1080 :
1081 : // Check shapes, coordsys with those of other images. If different, try to re-grid here.
1082 0 : if( (newmodel->shape() != model(nterm)->shape()) || (! itsCoordSys.near(newmodel->coordinates() )) )
1083 : {
1084 0 : os << "Regridding input model " << modelname << " to target coordinate system for " << itsImageName << ".model" << ((multiterm)?".tt"+String::toString(nterm) :"") << LogIO::POST;
1085 0 : regridToModelImage( *newmodel, nterm );
1086 : }
1087 : else
1088 : {
1089 0 : os << "Copying input model " << modelname << " to " << itsImageName << ".model" << ((multiterm)?".tt"+String::toString(nterm) :"") << LogIO::POST;
1090 0 : model(nterm)->copyData( LatticeExpr<Float> (*newmodel) );
1091 : }
1092 : }//nomask
1093 0 : }
1094 :
1095 : //////////////////////////////////////////////////////////////////////////////////////////////////////
1096 : //////////////////////////////////////////////////////////////////////////////////////////////////////
1097 :
1098 146 : IPosition SIImageStore::getShape()
1099 : {
1100 146 : return itsImageShape;
1101 : }
1102 :
1103 51 : String SIImageStore::getName()
1104 : {
1105 51 : return itsImageName;
1106 : }
1107 :
1108 106 : String SIImageStore::imageFullName(IMAGE_IDS imageId)
1109 : {
1110 106 : return itsImageName + imageExts(imageId);
1111 : }
1112 :
1113 149 : uInt SIImageStore::getNTaylorTerms(Bool /*dopsf*/)
1114 : {
1115 149 : return 1;
1116 : }
1117 :
1118 : /*
1119 : void SIImageStore::checkRef( std::shared_ptr<ImageInterface<Float> > ptr, const String label )
1120 : {
1121 : if( ! ptr && itsImageName==String("reference") )
1122 : {throw(AipsError("Internal Error : Attempt to access null subImageStore "+label + " by reference."));}
1123 : }
1124 : */
1125 :
1126 1024 : void SIImageStore::accessImage( std::shared_ptr<ImageInterface<Float> > &ptr,
1127 : std::shared_ptr<ImageInterface<Float> > &parentptr,
1128 : const String label )
1129 : {
1130 : // if ptr is not null, assume it's OK. Perhaps add more checks.
1131 :
1132 : //cerr << "ACCIM itsptr" << ptr.get() << " parent " << parentptr.get() << " label " << label << endl;
1133 :
1134 1024 : Bool sw=False;
1135 1024 : if( label.contains(imageExts(SUMWT)) ) sw=True;
1136 :
1137 1024 : if( !ptr )
1138 : {
1139 : //cout << itsNFacets << " " << itsNChanChunks << " " << itsNPolChunks << endl;
1140 315 : if( itsNFacets>1 || itsNChanChunks>1 || itsNPolChunks>1 )
1141 : {
1142 0 : if( ! parentptr )
1143 : {
1144 : //cout << "Making parent : " << itsImageName+label << " sw : " << sw << endl;
1145 0 : parentptr = openImage(itsImageName+label , itsOverWrite, sw, itsNFacets );
1146 0 : if( sw) {setUseWeightImage( *parentptr, itsUseWeight ); }
1147 : }
1148 : // cout << "Making facet " << itsFacetId << " out of " << itsNFacets << endl;
1149 : //cout << "Making chunk " << itsChanId << " out of " << itsNChanChunks << endl;
1150 : //ptr = makeFacet( itsFacetId, itsNFacets*itsNFacets, *parentptr );
1151 0 : ptr = makeSubImage( itsFacetId, itsNFacets*itsNFacets,
1152 : itsChanId, itsNChanChunks,
1153 : itsPolId, itsNPolChunks,
1154 0 : *parentptr );
1155 0 : if( ! sw )
1156 : {
1157 0 : itsImageShape = ptr->shape(); // over and over again.... FIX.
1158 0 : itsCoordSys = ptr->coordinates();
1159 0 : itsMiscInfo = ptr->miscInfo();
1160 : }
1161 :
1162 : //cout << "accessImage : " << label << " : sumwt : " << sw << " : shape : " << itsImageShape << endl;
1163 :
1164 : }
1165 : else
1166 : { //no facets of chanchunks
1167 315 : if(!parentptr){
1168 : ///coordsys for psf can be different ...shape should be the same.
1169 313 : ptr = openImage(itsImageName+label , itsOverWrite, sw, 1, !(label.contains(imageExts(PSF)))); }
1170 : else{
1171 2 : ptr=parentptr;
1172 : }
1173 : //cout << "Opening image : " << itsImageName+label << " of shape " << ptr->shape() << endl;
1174 : }
1175 : }
1176 :
1177 : //cerr << "ACCIM2 ptr " << ptr.get() << " lock " << itsReadLock.get() << endl;
1178 : //itsReadLock.reset(new LatticeLocker(*ptr, FileLocker::Read));
1179 :
1180 : // DirectionCoordinate dcord = ptr->coordinates().directionCoordinate();
1181 : // cout << "Latpole from " << label << " : " << dcord.longLatPoles() << endl;
1182 :
1183 1024 : }
1184 :
1185 :
1186 108 : std::shared_ptr<ImageInterface<Float> > SIImageStore::psf(uInt /*nterm*/)
1187 : {
1188 108 : accessImage( itsPsf, itsParentPsf, imageExts(PSF) );
1189 :
1190 108 : return itsPsf;
1191 : }
1192 208 : std::shared_ptr<ImageInterface<Float> > SIImageStore::residual(uInt /*nterm*/)
1193 : {
1194 208 : accessImage( itsResidual, itsParentResidual, imageExts(RESIDUAL) );
1195 : // Record mi = itsResidual->miscInfo(); ostringstream oss;mi.print(oss);cout<<"MiscInfo(res) : " << oss.str() << endl;
1196 208 : return itsResidual;
1197 : }
1198 67 : std::shared_ptr<ImageInterface<Float> > SIImageStore::weight(uInt /*nterm*/)
1199 : {
1200 67 : accessImage( itsWeight, itsParentWeight, imageExts(WEIGHT) );
1201 67 : return itsWeight;
1202 : }
1203 :
1204 115 : std::shared_ptr<ImageInterface<Float> > SIImageStore::sumwt(uInt /*nterm*/)
1205 : {
1206 :
1207 115 : accessImage( itsSumWt, itsParentSumWt, imageExts(SUMWT) );
1208 :
1209 115 : if( itsNFacets>1 || itsNChanChunks>1 || itsNPolChunks>1 )
1210 0 : { itsUseWeight = getUseWeightImage( *itsParentSumWt );}
1211 115 : setUseWeightImage( *itsSumWt , itsUseWeight); // Sets a flag in the SumWt image.
1212 :
1213 115 : return itsSumWt;
1214 : }
1215 :
1216 37 : std::shared_ptr<ImageInterface<Float> > SIImageStore::model(uInt /*nterm*/)
1217 : {
1218 37 : accessImage( itsModel, itsParentModel, imageExts(MODEL) );
1219 37 : LatticeLocker lock1(*itsModel, FileLocker::Write);
1220 : // Set up header info the first time.
1221 37 : itsModel->setUnits("Jy/pixel");
1222 :
1223 74 : return itsModel;
1224 37 : }
1225 29 : std::shared_ptr<ImageInterface<Float> > SIImageStore::image(uInt /*nterm*/)
1226 : {
1227 29 : accessImage( itsImage, itsParentImage, imageExts(IMAGE) );
1228 29 : LatticeLocker lock1(*itsImage, FileLocker::Write);
1229 29 : itsImage->setUnits(Unit("Jy/beam"));
1230 58 : return itsImage;
1231 29 : }
1232 :
1233 117 : std::shared_ptr<ImageInterface<Float> > SIImageStore::mask(uInt /*nterm*/)
1234 : {
1235 117 : accessImage( itsMask, itsParentMask, imageExts(MASK) );
1236 117 : return itsMask;
1237 : }
1238 0 : std::shared_ptr<ImageInterface<Float> > SIImageStore::gridwt(IPosition newshape)
1239 :
1240 : {
1241 0 : if(newshape.empty()){
1242 0 : accessImage( itsGridWt, itsParentGridWt, imageExts(GRIDWT) );
1243 : }
1244 : else{
1245 0 : if(!itsGridWt || (itsGridWt && (itsGridWt->shape() != newshape))){
1246 0 : itsGridWt.reset(); // deassign previous one hopefully it'll close it
1247 0 : CoordinateSystem newcoordsys=itsCoordSys;
1248 0 : if(newshape.nelements() > 4){
1249 0 : Matrix<Double> pc(1,1); pc = 1.0;
1250 0 : LinearCoordinate zc(Vector<String>(1, "FIELD_ORDER"), Vector<String>(1, ""), Vector<Double>(1, 0.0), Vector<Double>(1,1.0), pc, Vector<Double>(1,0.0));
1251 0 : newcoordsys.addCoordinate(zc);
1252 0 : }
1253 0 : itsGridWt.reset(new PagedImage<Float>(newshape, newcoordsys, itsImageName+ imageExts(GRIDWT)));
1254 0 : initMetaInfo(itsGridWt, itsImageName+ imageExts(GRIDWT));
1255 :
1256 0 : }
1257 : }
1258 : /// change the coordinate system here, to uv.
1259 0 : return itsGridWt;
1260 : }
1261 :
1262 0 : std::shared_ptr<ImageInterface<Float> > SIImageStore::tempworkimage(uInt /*term*/){
1263 0 : if(itsTempWorkIm) return itsTempWorkIm;
1264 0 : itsTempWorkIm.reset(new PagedImage<Float>(itsImageShape, itsCoordSys, itsImageName+ ".work.temp"));
1265 0 : static_cast<PagedImage<Float>* > (itsTempWorkIm.get())->set(0.0);
1266 0 : itsTempWorkIm->flush();
1267 0 : static_cast<PagedImage<Float>* > (itsTempWorkIm.get())->table().markForDelete();
1268 0 : return itsTempWorkIm;
1269 : }
1270 :
1271 112 : std::shared_ptr<ImageInterface<Float> > SIImageStore::pb(uInt /*nterm*/)
1272 : {
1273 112 : accessImage( itsPB, itsParentPB, imageExts(PB) );
1274 112 : return itsPB;
1275 : }
1276 0 : std::shared_ptr<ImageInterface<Float> > SIImageStore::imagepbcor(uInt /*nterm*/)
1277 : {
1278 0 : accessImage( itsImagePBcor, itsParentImagePBcor, imageExts(IMAGEPBCOR) );
1279 0 : LatticeLocker lock1(*itsImagePBcor, FileLocker::Write);
1280 0 : itsImagePBcor->setUnits(Unit("Jy/beam"));
1281 0 : return itsImagePBcor;
1282 0 : }
1283 :
1284 0 : std::shared_ptr<ImageInterface<Complex> > SIImageStore::forwardGrid(uInt /*nterm*/){
1285 0 : if( itsForwardGrid ) // && (itsForwardGrid->shape() == itsImageShape))
1286 : {
1287 : // cout << "Forward grid has shape : " << itsForwardGrid->shape() << endl;
1288 0 : return itsForwardGrid;
1289 : }
1290 0 : Vector<Int> whichStokes(0);
1291 0 : IPosition cimageShape;
1292 0 : cimageShape=itsImageShape;
1293 0 : MFrequency::Types freqframe = itsCoordSys.spectralCoordinate(itsCoordSys.findCoordinate(Coordinate::SPECTRAL)).frequencySystem(True);
1294 : // No need to set a conversion layer if image is in LSRK already or it is 'Undefined'
1295 0 : if(freqframe != MFrequency::LSRK && freqframe!=MFrequency::Undefined && freqframe!=MFrequency::REST)
1296 0 : { itsCoordSys.setSpectralConversion("LSRK"); }
1297 0 : CoordinateSystem cimageCoord = StokesImageUtil::CStokesCoord( itsCoordSys,
1298 0 : whichStokes, itsDataPolRep);
1299 0 : cimageCoord.setObsInfo(itsCoordSys.obsInfo());
1300 0 : cimageShape(2)=whichStokes.nelements();
1301 : //cout << "Making forward grid of shape : " << cimageShape << " for imshape : " << itsImageShape << endl;
1302 0 : itsForwardGrid.reset( new TempImage<Complex>(TiledShape(cimageShape, tileShape()), cimageCoord, memoryBeforeLattice()) );
1303 : //if(image())
1304 0 : if(hasRestored()){
1305 0 : LatticeLocker lock1(*itsForwardGrid, FileLocker::Write);
1306 0 : itsForwardGrid->setImageInfo((image())->imageInfo());
1307 :
1308 0 : }
1309 0 : return itsForwardGrid;
1310 0 : }
1311 :
1312 14 : std::shared_ptr<ImageInterface<Complex> > SIImageStore::backwardGrid(uInt /*nterm*/){
1313 14 : if( itsBackwardGrid ) //&& (itsBackwardGrid->shape() == itsImageShape))
1314 : {
1315 : // cout << "Backward grid has shape : " << itsBackwardGrid->shape() << endl;
1316 7 : return itsBackwardGrid;
1317 : }
1318 7 : Vector<Int> whichStokes(0);
1319 7 : IPosition cimageShape;
1320 7 : cimageShape=itsImageShape;
1321 7 : MFrequency::Types freqframe = itsCoordSys.spectralCoordinate(itsCoordSys.findCoordinate(Coordinate::SPECTRAL)).frequencySystem(True);
1322 : // No need to set a conversion layer if image is in LSRK already or it is 'Undefined'
1323 7 : if(freqframe != MFrequency::LSRK && freqframe!=MFrequency::Undefined && freqframe!=MFrequency::REST )
1324 0 : { itsCoordSys.setSpectralConversion("LSRK"); }
1325 7 : CoordinateSystem cimageCoord = StokesImageUtil::CStokesCoord( itsCoordSys,
1326 7 : whichStokes, itsDataPolRep);
1327 7 : cimageCoord.setObsInfo(itsCoordSys.obsInfo());
1328 7 : cimageShape(2)=whichStokes.nelements();
1329 : //cout << "Making backward grid of shape : " << cimageShape << " for imshape : " << itsImageShape << endl;
1330 7 : itsBackwardGrid.reset( new TempImage<Complex>(TiledShape(cimageShape, tileShape()), cimageCoord, memoryBeforeLattice()) );
1331 : //if(image())
1332 7 : if(hasRestored()){
1333 0 : LatticeLocker lock1(*itsBackwardGrid, FileLocker::Write);
1334 0 : itsBackwardGrid->setImageInfo((image())->imageInfo());
1335 0 : }
1336 7 : return itsBackwardGrid;
1337 7 : }
1338 40 : Double SIImageStore::memoryBeforeLattice(){
1339 : //Calculate how much memory to use per temporary images before disking
1340 40 : return 1.0; /// in MB
1341 : }
1342 40 : IPosition SIImageStore::tileShape(){
1343 : //Need to have settable stuff here or algorith to determine this
1344 40 : return IPosition(4, min(itsImageShape[0],1000), min(itsImageShape[1],1000), 1, 1);
1345 : }
1346 :
1347 : // TODO : Move to an image-wrapper class ? Same function exists in SynthesisDeconvolver.
1348 412 : Bool SIImageStore::doesImageExist(String imagename)
1349 : {
1350 824 : LogIO os( LogOrigin("SIImageStore","doesImageExist",WHERE) );
1351 412 : Directory image( imagename );
1352 824 : return image.exists();
1353 412 : }
1354 :
1355 :
1356 0 : void SIImageStore::resetImages( Bool resetpsf, Bool resetresidual, Bool resetweight )
1357 : {
1358 0 : if( resetpsf ){
1359 0 : LatticeLocker lock1(*(psf()), FileLocker::Write);
1360 0 : psf()->set(0.0);
1361 :
1362 0 : }
1363 0 : if( resetresidual ) {
1364 : // removeMask( residual() );
1365 0 : LatticeLocker lock1(*(residual()), FileLocker::Write);
1366 0 : residual()->set(0.0);
1367 0 : }
1368 0 : if( resetweight && itsWeight ){
1369 0 : LatticeLocker lock1(*(weight()), FileLocker::Write);
1370 0 : weight()->set(0.0);
1371 0 : }
1372 0 : if( resetweight ){
1373 0 : LatticeLocker lock1(*(sumwt()), FileLocker::Write);
1374 0 : sumwt()->set(0.0);
1375 0 : }
1376 0 : }
1377 :
1378 0 : void SIImageStore::addImages( std::shared_ptr<SIImageStore> imagestoadd,
1379 : Bool addpsf, Bool addresidual, Bool addweight, Bool adddensity)
1380 : {
1381 :
1382 0 : if(addpsf)
1383 : {
1384 0 : LatticeExpr<Float> adderPsf( *(psf()) + *(imagestoadd->psf()) );
1385 0 : psf()->copyData(adderPsf);
1386 0 : }
1387 0 : if(addresidual)
1388 : {
1389 0 : LatticeExpr<Float> adderRes( *(residual()) + *(imagestoadd->residual()) );
1390 0 : residual()->copyData(adderRes);
1391 0 : }
1392 0 : if(addweight)
1393 : {
1394 0 : if( getUseWeightImage( *(imagestoadd->sumwt()) ) ) // Access and add weight only if it is needed.
1395 : {
1396 0 : LatticeExpr<Float> adderWeight( *(weight()) + *(imagestoadd->weight()) );
1397 0 : weight()->copyData(adderWeight);
1398 0 : }
1399 :
1400 : /*
1401 : Array<Float> qqq, www;
1402 : imagestoadd->sumwt()->get(qqq,True);
1403 : sumwt()->get(www,True);
1404 : cout << "SUMWT : Adding : " << qqq << " to " << www << endl;
1405 : */
1406 :
1407 0 : LatticeExpr<Float> adderSumWt( *(sumwt()) + *(imagestoadd->sumwt()) );
1408 0 : sumwt()->copyData(adderSumWt);
1409 0 : setUseWeightImage( *sumwt(), getUseWeightImage(*(imagestoadd->sumwt()) ) );
1410 :
1411 0 : }
1412 0 : if(adddensity)
1413 : {
1414 0 : LatticeExpr<Float> adderDensity( *(gridwt()) + *(imagestoadd->gridwt()) );
1415 0 : gridwt()->copyData(adderDensity);
1416 0 : }
1417 :
1418 0 : }
1419 :
1420 0 : void SIImageStore::setWeightDensity( std::shared_ptr<SIImageStore> imagetoset )
1421 : {
1422 0 : LogIO os( LogOrigin("SIImageStore","setWeightDensity",WHERE) );
1423 : //gridwt()->copyData( LatticeExpr<Float> ( *(imagetoset->gridwt()) ) );
1424 : //looks like you have to call them before hand or it crashes in parallel sometimes
1425 0 : IPosition shape=(imagetoset->gridwt())->shape();
1426 0 : os << LogIO::DEBUG2 << "SHAPES " << imagetoset->gridwt()->shape() << " " << gridwt()->shape() << endl;
1427 0 : (gridwt(shape))->copyData( LatticeExpr<Float> ( *(imagetoset->gridwt()) ) );
1428 :
1429 0 : }
1430 :
1431 : // TODO
1432 : // cout << "WARN : get getPbMax right for cube.... weight is indexed on chan and pol." << endl;
1433 0 : Double SIImageStore::getPbMax()
1434 : {
1435 :
1436 : //// Don't do any extra norm. Minor cycle will operate with native PB.
1437 : //return 1.0;
1438 :
1439 : //// Normalize PB to 1 at the center of the image OF CHANNEL ZERO
1440 :
1441 : // IPosition shp = weight(0)->shape();
1442 : // IPosition center(4, shp[0]/2, shp[1]/2,0,0);
1443 : // return sqrt( weight(0)->getAt( center ) );
1444 :
1445 :
1446 : //// Normalize PB to 1 at the location of the maximum (across all chans..)
1447 :
1448 0 : LatticeExprNode le( sqrt(max( *(weight(0)) )) );
1449 0 : return le.getFloat();
1450 :
1451 0 : }
1452 :
1453 42 : Double SIImageStore::getPbMax(Int pol,Int chan)
1454 : {
1455 :
1456 : //// Normalize PB to 1 at the location of the maximum (per pol,chan)
1457 :
1458 42 : CountedPtr<ImageInterface<Float> > subim=makeSubImage(0, 1,
1459 42 : chan, itsImageShape[3],
1460 42 : pol, itsImageShape[2],
1461 84 : *weight(0));
1462 :
1463 84 : return sqrt(max(subim->get()));
1464 42 : }
1465 :
1466 3 : void SIImageStore::makePBFromWeight(const Float pblimit)
1467 : {
1468 6 : LogIO os( LogOrigin("SIImageStore","makePBFromWeight",WHERE) );
1469 :
1470 6 : for(Int pol=0; pol<itsImageShape[2]; pol++)
1471 : {
1472 9 : for(Int chan=0; chan<itsImageShape[3]; chan++)
1473 : {
1474 :
1475 6 : itsPBScaleFactor = getPbMax(pol,chan);
1476 :
1477 6 : if(itsPBScaleFactor<=0){os << LogIO::NORMAL1 << "Skipping normalization for C:" << chan << " P:" << pol << " because pb max is zero " << LogIO::POST;}
1478 : else {
1479 :
1480 3 : CountedPtr<ImageInterface<Float> > wtsubim=makeSubImage(0,1,
1481 3 : chan, itsImageShape[3],
1482 3 : pol, itsImageShape[2],
1483 6 : *weight() );
1484 3 : CountedPtr<ImageInterface<Float> > pbsubim=makeSubImage(0,1,
1485 3 : chan, itsImageShape[3],
1486 3 : pol, itsImageShape[2],
1487 6 : *pb() );
1488 :
1489 :
1490 6 : LatticeExpr<Float> normed( sqrt(abs(*wtsubim)) / itsPBScaleFactor );
1491 6 : LatticeExpr<Float> limited( iif( normed > fabs(pblimit) , normed, 0.0 ) );
1492 3 : pbsubim->copyData( limited );
1493 3 : }// if not zero
1494 : }
1495 : }
1496 :
1497 3 : if((pb()->getDefaultMask()==""))
1498 : {
1499 : //Remove the old mask as it is no longer valid
1500 : //removeMask( pb() );
1501 :
1502 : // if( pblimit >= 0.0 )
1503 : {
1504 : //MSK//
1505 6 : LatticeExpr<Bool> pbmask( iif( *pb() > fabs(pblimit) , True , False ) );
1506 : //MSK//
1507 3 : createMask( pbmask, pb() );
1508 3 : pb()->pixelMask().unlock();
1509 3 : }
1510 :
1511 : }
1512 3 : weight()->unlock();
1513 3 : pb()->unlock();
1514 3 : }
1515 :
1516 4 : void SIImageStore::makePBImage(const Float pblimit)
1517 : {
1518 8 : LogIO os( LogOrigin("SIImageStore","makePBImage",WHERE) );
1519 :
1520 4 : if( hasPB() )
1521 : {
1522 :
1523 8 : for(Int pol=0; pol<itsImageShape[2]; pol++)
1524 : {
1525 14 : for(Int chan=0; chan<itsImageShape[3]; chan++)
1526 : {
1527 :
1528 10 : CountedPtr<ImageInterface<Float> > pbsubim=makeSubImage(0,1,
1529 10 : chan, itsImageShape[3],
1530 10 : pol, itsImageShape[2],
1531 20 : *pb() );
1532 :
1533 : // Norm by the max
1534 10 : LatticeExprNode elmax= max( *pbsubim );
1535 10 : Float fmax = abs(elmax.getFloat());
1536 : //If there are multiple overlap of beam such that the peak is larger than 1 then normalize
1537 : //otherwise leave as is
1538 10 : if(fmax>1.0)
1539 : {
1540 0 : LatticeExpr<Float> normed( (*pbsubim) / fmax );
1541 0 : LatticeExpr<Float> limited( iif( normed > fabs(pblimit) , normed, 0.0 ) );
1542 0 : pbsubim->copyData( limited );
1543 0 : }
1544 : else
1545 : {
1546 20 : LatticeExpr<Float> limited( iif((*pbsubim) > fabs(pblimit) , (*pbsubim), 0.0 ) );
1547 10 : pbsubim->copyData( limited );
1548 10 : }
1549 10 : }
1550 : }
1551 :
1552 4 : if((pb()->getDefaultMask()==""))// && pblimit >= 0.0)
1553 : {
1554 : // removeMask( pb() );
1555 : //MSK//
1556 8 : LatticeExpr<Bool> pbmask( iif( *pb() > fabs(pblimit) , True , False ) );
1557 : //MSK//
1558 4 : createMask( pbmask, pb() );
1559 4 : pb()->pixelMask().unlock();
1560 4 : }
1561 :
1562 : }// if hasPB
1563 4 : pb()->unlock();
1564 :
1565 4 : }
1566 :
1567 9 : Bool SIImageStore::createMask(LatticeExpr<Bool> &lemask,
1568 : CountedPtr<ImageInterface<Float> > outimage)
1569 : {
1570 : //cout << "Calling makeMask for mask0 for " << outimage->name() << endl;
1571 : try
1572 : {
1573 9 : LatticeLocker lock1(*outimage, FileLocker::Write);
1574 9 : ImageRegion outreg = outimage->makeMask("mask0",False,True);
1575 9 : LCRegion& outmask=outreg.asMask();
1576 9 : outmask.copyData(lemask);
1577 9 : outimage->defineRegion("mask0",outreg, RegionHandler::Masks, True);
1578 :
1579 9 : outimage->setDefaultMask("mask0");
1580 :
1581 9 : outimage->unlock();
1582 9 : outimage->tempClose();
1583 :
1584 : // outimage->table().unmarkForDelete();
1585 9 : }
1586 0 : catch (const AipsError& x) {
1587 0 : throw(AipsError("Error in creating internal T/F mask : " + x.getMesg() ));
1588 0 : }
1589 :
1590 9 : return True;
1591 : }
1592 :
1593 15 : Bool SIImageStore::copyMask(CountedPtr<ImageInterface<Float> > inimage,
1594 : CountedPtr<ImageInterface<Float> > outimage)
1595 : {
1596 : // cout << "In copyMask for " << outimage->name() << endl;
1597 :
1598 : try
1599 : {
1600 15 : if( (inimage->getDefaultMask()).matches("mask0") ) // input mask exists.
1601 12 : {LatticeLocker lock1(*outimage, FileLocker::Write);
1602 12 : removeMask(outimage);
1603 :
1604 : // // clear output image mask
1605 : // if( (outimage->getDefaultMask()).matches("mask0") )
1606 : // {outimage->setDefaultMask("");
1607 : // outimage->removeRegion("mask0");}
1608 : // get mask from input image
1609 :
1610 12 : ImageRegion outreg=outimage->makeMask("mask0", False, True);
1611 12 : LCRegion& outmask=outreg.asMask();
1612 12 : outmask.copyData(inimage->getRegion("mask0").asLCRegion());
1613 12 : outimage->defineRegion("mask0",outreg, RegionHandler::Masks,True);
1614 12 : outimage->setDefaultMask("mask0");
1615 12 : }
1616 : }
1617 0 : catch (const AipsError& x) {
1618 0 : throw(AipsError("Error in copying internal T/F mask : " + x.getMesg() ));
1619 0 : }
1620 :
1621 15 : return True;
1622 : }
1623 :
1624 14 : void SIImageStore::removeMask(CountedPtr<ImageInterface<Float> > im)
1625 : {
1626 : try
1627 : {
1628 : // // clear output image mask
1629 : // if( (im->getDefaultMask()).matches("mask0") )
1630 : // {im->setDefaultMask("");
1631 : // im->removeRegion("mask0");}
1632 : ///Remove the old mask as it is no longer valid
1633 14 : LatticeLocker lock1(*im, FileLocker::Write);
1634 14 : if (im-> getDefaultMask() != String(""))
1635 : {
1636 6 : String strung=im->getDefaultMask();
1637 6 : im->setDefaultMask("");
1638 6 : im->removeRegion(strung);
1639 6 : }
1640 14 : if( im->hasRegion("mask0") )
1641 : {
1642 0 : im->removeRegion("mask0");
1643 : }
1644 14 : }
1645 0 : catch (const AipsError& x)
1646 : {
1647 0 : throw(AipsError("Error in deleting internal T/F mask : " + x.getMesg() ));
1648 0 : }
1649 14 : }
1650 0 : void SIImageStore:: rescaleResolution(Int chan,
1651 : ImageInterface<Float>& image,
1652 : const GaussianBeam& newbeam,
1653 : const GaussianBeam& oldbeam){
1654 :
1655 0 : LogIO os( LogOrigin("SIImageStore","rescaleResolution",WHERE) );
1656 0 : GaussianBeam toBeUsed(Quantity(0.0, "arcsec"),Quantity(0.0, "arcsec"),
1657 0 : Quantity(0.0, "deg")) ;
1658 : try {
1659 0 : Bool samesize = GaussianDeconvolver::deconvolve(toBeUsed, newbeam, oldbeam);
1660 :
1661 : /*
1662 : os << LogIO::NORMAL2 << "Chan : " << chan << " : Input beam : : " << oldbeam.getMajor(Unit("arcsec")) << " arcsec, " << oldbeam.getMinor(Unit("arcsec"))<< " arcsec, " << oldbeam.getPA(Unit("deg")) << " deg" << LogIO::POST;
1663 : os << LogIO::NORMAL2 << "Target beam : " << newbeam.getMajor(Unit("arcsec")) << " arcsec, " << newbeam.getMinor(Unit("arcsec"))<< " arcsec, " << newbeam.getPA(Unit("deg")) << " deg" << LogIO::POST;
1664 : os << LogIO::NORMAL2 << "Beam to be used : " << toBeUsed.getMajor(Unit("arcsec")) << " arcsec, " << toBeUsed.getMinor(Unit("arcsec"))<< " arcsec, " << toBeUsed.getPA(Unit("deg")) << " deg" << LogIO::POST;
1665 : os << LogIO::NORMAL2 << "SameSize ? " << samesize << endl;
1666 : */
1667 :
1668 0 : if( samesize )
1669 : {
1670 0 : os << LogIO::NORMAL2 << "Input and output beam sizes are the same for Channel : " << chan << ". Not convolving residuals." << LogIO::POST;
1671 : }
1672 : else
1673 : {
1674 0 : Double pixwidth=sqrt(image.coordinates().increment()(0)*image.coordinates().increment()(0)+image.coordinates().increment()(1)*image.coordinates().increment()(1));
1675 :
1676 0 : if(toBeUsed.getMinor(image.coordinates().worldAxisUnits()[0]) > pixwidth)
1677 : {
1678 : //cerr << "old beam area " << oldbeam.getArea("rad2") << " new beam " << newbeam.getArea("rad2") << endl;
1679 0 : StokesImageUtil::Convolve(image, toBeUsed, True);
1680 0 : image.copyData(LatticeExpr<Float>(image*newbeam.getArea("rad2")/ oldbeam.getArea("rad2")));
1681 : }
1682 : }
1683 : }
1684 0 : catch (const AipsError& x) {
1685 : //throw(AipsError("Cannot convolve to new beam: may be smaller than old beam : " + x.getMesg() ));
1686 0 : os << LogIO::WARN << "Cannot convolve to new beam for Channel : " << chan << " : " << x.getMesg() << LogIO::POST;
1687 0 : }
1688 :
1689 :
1690 0 : }
1691 :
1692 7 : void SIImageStore::divideWeightBySumwt()
1693 : {
1694 14 : LogIO os(LogOrigin("SIImageStore", "divideWeightBySumWt", WHERE));
1695 :
1696 :
1697 7 : if( itsUseWeight )
1698 : {
1699 :
1700 3 : divideImageByWeightVal( *weight() );
1701 : }
1702 :
1703 7 : }
1704 :
1705 :
1706 6 : void SIImageStore::dividePSFByWeight(const Float /* pblimit*/)
1707 : {
1708 12 : LogIO os( LogOrigin("SIImageStore","dividePSFByWeight",WHERE) );
1709 :
1710 6 : LatticeLocker lock1 (*(psf()), FileLocker::Write);
1711 6 : normPSF();
1712 : //This bit us twice now...hiding this sensitivity division in psf division has wasted a few FTE days
1713 : // Leaving it commented so as it is a lesson of not what to do...
1714 : // moving it to its own function
1715 : // if( itsUseWeight )
1716 : // {
1717 :
1718 : //divideImageByWeightVal( *weight() );
1719 : // }
1720 6 : (psf())->unlock();
1721 :
1722 6 : }
1723 :
1724 6 : void SIImageStore::normalizePrimaryBeam(const Float pblimit)
1725 : {
1726 12 : LogIO os( LogOrigin("SIImageStore","normalizePrimaryBeam",WHERE) );
1727 :
1728 : // cout << "In dividePSFByWeight : itsUseWeight : " << itsUseWeight << endl;
1729 6 : if( itsUseWeight )
1730 : {
1731 :
1732 6 : for(Int pol=0; pol<itsImageShape[2]; pol++)
1733 : {
1734 9 : for(Int chan=0; chan<itsImageShape[3]; chan++)
1735 : {
1736 6 : os << LogIO::NORMAL1 << "Scale factor for [C" +String::toString(chan) + ":P" + String::toString(pol) + "] to keep the model image w.r.to a PB of max=1 is " << getPbMax(pol,chan) << LogIO::POST;
1737 : }//chan
1738 : }//pol
1739 :
1740 3 : makePBFromWeight(pblimit);
1741 :
1742 : }//if itsUseWeight
1743 3 : else { makePBImage(pblimit); } // OR... just check that it exists already.
1744 6 : pb()->unlock();
1745 :
1746 6 : }
1747 :
1748 : // Make another for the PSF too.
1749 15 : void SIImageStore::divideResidualByWeight(Float pblimit, String normtype) {
1750 :
1751 30 : LogIO os(LogOrigin("SIImageStore", "divideResidualByWeight", WHERE));
1752 15 : LatticeLocker lock1(*(residual()), FileLocker::Write);
1753 :
1754 9 : auto logTemplate = [&](Int const &chan, Int const &pol, string const &normalizer, string const &result) {
1755 9 : os << LogIO::NORMAL1
1756 18 : << "[C" + String::toString(chan) + ":P" + String::toString(pol) + "] "
1757 18 : << "Dividing " << itsImageName + String(".residual") << " by "
1758 : << "[ " << normalizer << " ] "
1759 27 : << "to get " << result << "." << LogIO::POST;
1760 9 : };
1761 :
1762 : // Normalize by the sumwt, per plane.
1763 15 : Bool didNorm = divideImageByWeightVal(*residual());
1764 :
1765 15 : if (itsUseWeight) {
1766 18 : for (Int pol = 0; pol < itsImageShape[2]; pol++) {
1767 27 : for (Int chan = 0; chan < itsImageShape[3]; chan++) {
1768 18 : itsPBScaleFactor = getPbMax(pol, chan);
1769 :
1770 18 : if (itsPBScaleFactor <= 0) {
1771 : os << LogIO::NORMAL1
1772 : << "Skipping normalization for C:" << chan << " P:" << pol
1773 9 : << " because pb max is zero " << LogIO::POST;
1774 :
1775 : } else {
1776 9 : CountedPtr<ImageInterface<Float> > wtsubim = makeSubImage(0, 1,
1777 9 : chan, itsImageShape[3],
1778 9 : pol, itsImageShape[2],
1779 18 : *weight());
1780 9 : CountedPtr<ImageInterface<Float> > ressubim = makeSubImage(0, 1,
1781 9 : chan, itsImageShape[3],
1782 9 : pol, itsImageShape[2],
1783 18 : *residual());
1784 9 : LatticeExpr<Float> ratio;
1785 9 : Float scalepb = 1.0;
1786 :
1787 9 : if (normtype == "flatnoise") {
1788 27 : logTemplate(chan, pol,
1789 18 : "sqrt(weightimage) * " + String::toString(itsPBScaleFactor),
1790 : "flat noise with unit pb peak");
1791 :
1792 18 : LatticeExpr<Float> deno = itsPBScaleFactor * sqrt(abs(LatticeExpr<Float>(*(wtsubim))));
1793 9 : scalepb = fabs(pblimit) * itsPBScaleFactor * itsPBScaleFactor;
1794 9 : ratio = iif(deno > scalepb, (*(ressubim) / deno), 0.0);
1795 :
1796 9 : } else if (normtype == "pbsquare") {
1797 0 : logTemplate(chan, pol,
1798 0 : String::toString(itsPBScaleFactor),
1799 : "optimal noise with unit pb peak");
1800 :
1801 0 : Float deno = itsPBScaleFactor * itsPBScaleFactor;
1802 0 : ratio = (*(ressubim) / deno);
1803 :
1804 0 : } else if (normtype == "flatsky") {
1805 0 : logTemplate(chan, pol, "weight", "flat sky");
1806 :
1807 0 : LatticeExpr<Float> deno = LatticeExpr<Float>(*(wtsubim));
1808 0 : scalepb = fabs(pblimit * pblimit) * itsPBScaleFactor * itsPBScaleFactor;
1809 0 : ratio = iif(deno > scalepb, (*(ressubim) / deno), 0.0);
1810 :
1811 0 : }
1812 :
1813 : //IPosition ip(4, itsImageShape[0] / 2, itsImageShape[1]/2, 0, 0);
1814 : //Float resval = ressubim->getAt(ip);
1815 : //LatticeExpr<Float> mask(iif((deno) > scalepb, 1.0, 0.0));
1816 : //LatticeExpr<Float> maskinv(iif((deno) > scalepb, 0.0, 1.0));
1817 : //LatticeExpr<Float> ratio(((*(ressubim)) * mask) / (deno + maskinv));
1818 :
1819 : //above blocks all sources outside minpb but visible with weight coverage
1820 : //which could be cleaned out...one could use below for that
1821 : //LatticeExpr<Float> ratio(iif(deno > scalepb, (*(ressubim)) / deno, *ressubim));
1822 :
1823 9 : ressubim->copyData(ratio);
1824 :
1825 : //cout << "Val of residual before|after normalizing at center for pol " << pol << " chan " << chan << " : " << resval << "|" << ressubim->getAt(ip) << " weight : " << wtsubim->getAt(ip) << endl;
1826 9 : } // if not zero
1827 : } //chan
1828 : } //pol
1829 : }
1830 :
1831 : // If no normalization happened, print a warning. The user must check if it's right or not.
1832 : // Or... later if we get a gridder that does pre-norms, this warning can go.
1833 15 : if ((didNorm | itsUseWeight) != True) {
1834 0 : os << LogIO::WARN << "No normalization done to residual" << LogIO::POST;
1835 : }
1836 :
1837 : ///// A T/F mask in the residual will confuse users looking at the interactive clean
1838 : ///// window
1839 15 : if ((residual()->getDefaultMask() == "") && hasPB() && pblimit >=0.0) {
1840 0 : copyMask(pb(), residual());
1841 : }
1842 :
1843 15 : if ((pblimit < 0.0) && (residual()->getDefaultMask()).matches("mask0")) {
1844 0 : removeMask(residual());
1845 : }
1846 :
1847 15 : residual()->unlock();
1848 15 : }
1849 :
1850 7 : void SIImageStore::divideResidualByWeightSD(Float pblimit) {
1851 :
1852 14 : LogIO os(LogOrigin("SIImageStore", "divideResidualByWeightSD", WHERE));
1853 7 : LatticeLocker lock1(*(residual()), FileLocker::Write);
1854 :
1855 7 : if (itsUseWeight) {
1856 14 : LatticeExpr<Float> deno = LatticeExpr<Float>(*weight());
1857 14 : LatticeExpr<Float> ratio = iif(deno > 0.0, *(residual()) / deno, 0.0);
1858 7 : residual()->copyData(ratio);
1859 7 : }
1860 : else {
1861 : // If no normalization happened, print a warning. The user must check if it's right or not.
1862 : // Or... later if we get a gridder that does pre-norms, this warning can go.
1863 0 : os << LogIO::WARN << "No normalization done to residual" << LogIO::POST;
1864 : }
1865 :
1866 : ///// A T/F mask in the residual will confuse users looking at the interactive clean
1867 : ///// window
1868 7 : if ((residual()->getDefaultMask() == "") && hasPB() && pblimit >=0.0) {
1869 0 : copyMask(pb(), residual());
1870 : }
1871 :
1872 7 : if ((pblimit < 0.0) && (residual()->getDefaultMask()).matches("mask0")) {
1873 0 : removeMask(residual());
1874 : }
1875 :
1876 7 : residual()->unlock();
1877 7 : }
1878 :
1879 6 : void SIImageStore::divideModelByWeight(Float pblimit, const String normtype)
1880 : {
1881 12 : LogIO os( LogOrigin("SIImageStore","divideModelByWeight",WHERE) );
1882 :
1883 :
1884 12 : if(itsUseWeight // only when needed
1885 6 : && weight() )// i.e. only when possible. For an initial starting model, don't need wt anyway.
1886 : {
1887 :
1888 6 : if( normtype=="flatsky") {
1889 :
1890 0 : LatticeExprNode LEN = max( *model());
1891 0 : os << LogIO::NORMAL1 << "Model is already flat sky with peak flux : " << LEN.getFloat();
1892 0 : os << ". No need to divide before prediction" << LogIO::POST;
1893 :
1894 0 : return;
1895 0 : }
1896 6 : else if( normtype=="flatnoise"){
1897 :
1898 12 : for(Int pol=0; pol<itsImageShape[2]; pol++)
1899 : {
1900 18 : for(Int chan=0; chan<itsImageShape[3]; chan++)
1901 : {
1902 :
1903 12 : itsPBScaleFactor = getPbMax(pol,chan);
1904 : // cout << " pbscale : " << itsPBScaleFactor << endl;
1905 12 : if(itsPBScaleFactor<=0){os << LogIO::NORMAL1 << "Skipping normalization for C:" << chan << " P:" << pol << " because pb max is zero " << LogIO::POST;}
1906 : else {
1907 :
1908 6 : CountedPtr<ImageInterface<Float> > wtsubim=makeSubImage(0,1,
1909 6 : chan, itsImageShape[3],
1910 6 : pol, itsImageShape[2],
1911 12 : *weight() );
1912 6 : CountedPtr<ImageInterface<Float> > modsubim=makeSubImage(0,1,
1913 6 : chan, itsImageShape[3],
1914 6 : pol, itsImageShape[2],
1915 12 : *model() );
1916 6 : os << LogIO::NORMAL1 ;
1917 6 : os << "[C" +String::toString(chan) + ":P" + String::toString(pol) + "] ";
1918 6 : os << "Dividing " << itsImageName+String(".model") ;
1919 6 : os << " by [ sqrt(weight) / " << itsPBScaleFactor ;
1920 6 : os <<" ] to get to flat sky model before prediction" << LogIO::POST;
1921 :
1922 :
1923 12 : LatticeExpr<Float> deno( sqrt( abs(*(wtsubim)) ) / itsPBScaleFactor );
1924 :
1925 12 : LatticeExpr<Float> mask( iif( (deno) > fabs(pblimit) , 1.0, 0.0 ) );
1926 12 : LatticeExpr<Float> maskinv( iif( (deno) > fabs(pblimit) , 0.0, 1.0 ) );
1927 12 : LatticeExpr<Float> ratio( ( (*(modsubim)) * mask ) / ( deno + maskinv ) );
1928 :
1929 : //
1930 : //The above has a problem...mask is cutting out clean components found
1931 : // outside pblimit ...use below if this is what is wanted
1932 : //LatticeExpr<Float> ratio(iif(sqrt(abs(*(wtsubim))) < (fabs(pblimit)*itsPBScaleFactor), 0.0, (*(modsubim))/(sqrt( abs(*(wtsubim))) / itsPBScaleFactor)));
1933 : // LatticeExpr<Float> ratio(iif((sqrt(abs(*(wtsubim))) ==0.0), 0.0, ((*(modsubim))*itsPBScaleFactor)/sqrt( abs(*(wtsubim))) ));
1934 :
1935 6 : IPosition ip(4,itsImageShape[0]/2,itsImageShape[1]/2,0,0);
1936 : /// Float modval = modsubim->getAt(ip);
1937 : //LatticeExprNode aminval( min(*modsubim) );
1938 : //LatticeExprNode amaxval( max(*modsubim) );
1939 : //cout << "Before ---- min : " << aminval.getFloat() << " max : " << amaxval.getFloat() << endl;
1940 :
1941 6 : modsubim->copyData(ratio);
1942 : // cout << "Val of model before|after flattening at center for pol " << pol << " chan " << chan << " : " << modval << "|" << modsubim->getAt(ip) << " weight : " << wtsubim->getAt(ip) << endl;
1943 : //LatticeExprNode minval( min(*modsubim) );
1944 : //LatticeExprNode maxval( max(*modsubim) );
1945 : //cout << "After ---- min : " << minval.getFloat() << " max : " << maxval.getFloat() << endl;
1946 6 : }// if not zero
1947 : }//chan
1948 : }//pol
1949 :
1950 : }
1951 0 : else if( normtype=="pbsquare"){
1952 :
1953 0 : for(Int pol=0; pol<itsImageShape[2]; pol++)
1954 : {
1955 0 : for(Int chan=0; chan<itsImageShape[3]; chan++)
1956 : {
1957 :
1958 0 : itsPBScaleFactor = getPbMax(pol,chan);
1959 : // cout << " pbscale : " << itsPBScaleFactor << endl;
1960 0 : if(itsPBScaleFactor<=0){os << LogIO::NORMAL1 << "Skipping normalization for C:" << chan << " P:" << pol << " because pb max is zero " << LogIO::POST;}
1961 : else {
1962 :
1963 0 : CountedPtr<ImageInterface<Float> > wtsubim=makeSubImage(0,1,
1964 0 : chan, itsImageShape[3],
1965 0 : pol, itsImageShape[2],
1966 0 : *weight() );
1967 0 : CountedPtr<ImageInterface<Float> > modsubim=makeSubImage(0,1,
1968 0 : chan, itsImageShape[3],
1969 0 : pol, itsImageShape[2],
1970 0 : *model() );
1971 0 : os << LogIO::NORMAL1 ;
1972 0 : os << "[C" +String::toString(chan) + ":P" + String::toString(pol) + "] ";
1973 0 : os << "Dividing " << itsImageName+String(".model") ;
1974 0 : os << " by [ (weight) / " << itsPBScaleFactor ;
1975 0 : os <<" ] to restore to optimal sky model before prediction" << LogIO::POST;
1976 :
1977 :
1978 0 : LatticeExpr<Float> deno( abs(*(wtsubim)) / (itsPBScaleFactor*itsPBScaleFactor) );
1979 :
1980 0 : LatticeExpr<Float> mask( iif( (deno) > fabs(pblimit) , 1.0, 0.0 ) );
1981 0 : LatticeExpr<Float> maskinv( iif( (deno) > fabs(pblimit) , 0.0, 1.0 ) );
1982 0 : LatticeExpr<Float> ratio( ( (*(modsubim)) * mask ) / ( deno + maskinv ) );
1983 :
1984 : //
1985 : //The above has a problem...mask is cutting out clean components found
1986 : // outside pblimit ...use below if this is what is wanted
1987 : // LatticeExpr<Float> ratio(iif(abs(*(wtsubim)) == 0.0, *modsubim, (*(modsubim))/( abs(*(wtsubim)) / (itsPBScaleFactor*itsPBScaleFactor))));
1988 :
1989 0 : IPosition ip(4,itsImageShape[0]/2,itsImageShape[1]/2,0,0);
1990 : /// Float modval = modsubim->getAt(ip);
1991 : //LatticeExprNode aminval( min(*modsubim) );
1992 : //LatticeExprNode amaxval( max(*modsubim) );
1993 : //cout << "Before ---- min : " << aminval.getFloat() << " max : " << amaxval.getFloat() << endl;
1994 :
1995 0 : modsubim->copyData(ratio);
1996 :
1997 : // cout << "Val of model before|after flattening at center for pol " << pol << " chan " << chan << " : " << modval << "|" << modsubim->getAt(ip) << " weight : " << wtsubim->getAt(ip) << endl;
1998 : //LatticeExprNode minval( min(*modsubim) );
1999 : //LatticeExprNode maxval( max(*modsubim) );
2000 : //cout << "After ---- min : " << minval.getFloat() << " max : " << maxval.getFloat() << endl;
2001 0 : }// if not zero
2002 : }//chan
2003 : }//pol
2004 :
2005 : }
2006 :
2007 : // storeImg(String("flatmodel.im"), *model());
2008 :
2009 : }
2010 6 : }
2011 :
2012 0 : void SIImageStore::multiplyModelByWeight(Float pblimit, const String normtype)
2013 : {
2014 0 : LogIO os( LogOrigin("SIImageStore","multiplyModelByWeight",WHERE) );
2015 :
2016 0 : if(itsUseWeight // only when needed
2017 0 : && weight() )// i.e. only when possible. For an initial starting model, don't need wt anyway.
2018 : {
2019 0 : if( normtype=="flatsky") {
2020 0 : os << "Model is already flat sky. No need to multiply back after prediction" << LogIO::POST;
2021 0 : return;
2022 : }
2023 0 : else if( normtype=="flatnoise"){
2024 :
2025 0 : for(Int pol=0; pol<itsImageShape[2]; pol++)
2026 : {
2027 0 : for(Int chan=0; chan<itsImageShape[3]; chan++)
2028 : {
2029 :
2030 0 : itsPBScaleFactor = getPbMax(pol,chan);
2031 : // cout << " pbscale : " << itsPBScaleFactor << endl;
2032 0 : if(itsPBScaleFactor<=0){os << LogIO::NORMAL1 << "Skipping normalization for C:" << chan << " P:" << pol << " because pb max is zero " << LogIO::POST;}
2033 : else {
2034 :
2035 0 : CountedPtr<ImageInterface<Float> > wtsubim=makeSubImage(0,1,
2036 0 : chan, itsImageShape[3],
2037 0 : pol, itsImageShape[2],
2038 0 : *weight() );
2039 0 : CountedPtr<ImageInterface<Float> > modsubim=makeSubImage(0,1,
2040 0 : chan, itsImageShape[3],
2041 0 : pol, itsImageShape[2],
2042 0 : *model() );
2043 :
2044 :
2045 :
2046 0 : os << LogIO::NORMAL1 ;
2047 0 : os << "[C" +String::toString(chan) + ":P" + String::toString(pol) + "] ";
2048 0 : os << "Multiplying " << itsImageName+String(".model") ;
2049 0 : os << " by [ sqrt(weight) / " << itsPBScaleFactor;
2050 0 : os << " ] to take model back to flat noise with unit pb peak." << LogIO::POST;
2051 :
2052 0 : LatticeExpr<Float> deno( sqrt( abs(*(wtsubim)) ) / itsPBScaleFactor );
2053 :
2054 0 : LatticeExpr<Float> mask( iif( (deno) > fabs(pblimit) , 1.0, 0.0 ) );
2055 0 : LatticeExpr<Float> maskinv( iif( (deno) > fabs(pblimit) , 0.0, 1.0 ) );
2056 0 : LatticeExpr<Float> ratio( ( (*(modsubim)) * mask ) * ( deno + maskinv ) );
2057 :
2058 : /////See comment in divmodel and divresidual for below usage
2059 : //LatticeExpr<Float> ratio ( (*(modsubim)) * sqrt( abs(*(wtsubim))) / itsPBScaleFactor );
2060 0 : modsubim->copyData(ratio);
2061 :
2062 0 : }// if not zero
2063 : }//chan
2064 : }//pol
2065 : }
2066 0 : else if( normtype=="pbsquare"){
2067 :
2068 0 : for(Int pol=0; pol<itsImageShape[2]; pol++)
2069 : {
2070 0 : for(Int chan=0; chan<itsImageShape[3]; chan++)
2071 : {
2072 :
2073 0 : itsPBScaleFactor = getPbMax(pol,chan);
2074 : // cout << " pbscale : " << itsPBScaleFactor << endl;
2075 0 : if(itsPBScaleFactor<=0){os << LogIO::NORMAL1 << "Skipping normalization for C:" << chan << " P:" << pol << " because pb max is zero " << LogIO::POST;}
2076 : else {
2077 :
2078 0 : CountedPtr<ImageInterface<Float> > wtsubim=makeSubImage(0,1,
2079 0 : chan, itsImageShape[3],
2080 0 : pol, itsImageShape[2],
2081 0 : *weight() );
2082 0 : CountedPtr<ImageInterface<Float> > modsubim=makeSubImage(0,1,
2083 0 : chan, itsImageShape[3],
2084 0 : pol, itsImageShape[2],
2085 0 : *model() );
2086 :
2087 :
2088 :
2089 0 : os << LogIO::NORMAL1 ;
2090 0 : os << "[C" +String::toString(chan) + ":P" + String::toString(pol) + "] ";
2091 0 : os << "Multiplying " << itsImageName+String(".model") ;
2092 0 : os << " by [ weight / " << itsPBScaleFactor*itsPBScaleFactor;
2093 0 : os << " ] to take model back to flat noise with unit pb peak." << LogIO::POST;
2094 :
2095 0 : LatticeExpr<Float> deno( abs(*(wtsubim)) / (itsPBScaleFactor*itsPBScaleFactor) );
2096 :
2097 0 : LatticeExpr<Float> mask( iif( (deno) > fabs(pblimit) , 1.0, 0.0 ) );
2098 0 : LatticeExpr<Float> maskinv( iif( (deno) > fabs(pblimit) , 0.0, 1.0 ) );
2099 0 : LatticeExpr<Float> ratio( ( (*(modsubim)) * mask ) * ( deno + maskinv ) );
2100 :
2101 : /////See comment in divmodel and divresidual for below usage
2102 : //LatticeExpr<Float> ratio ( (*(modsubim)) * sqrt( abs(*(wtsubim)) / itsPBScaleFactor) );
2103 0 : modsubim->copyData(ratio);
2104 0 : }// if not zero
2105 : }//chan
2106 : }//pol
2107 : }
2108 : }
2109 0 : }
2110 :
2111 0 : GaussianBeam SIImageStore::getPSFGaussian(Float psfcutoff)
2112 : {
2113 0 : GaussianBeam beam;
2114 : try
2115 : {
2116 0 : if( psf()->ndim() > 0 )
2117 : {
2118 0 : LatticeLocker lock2 (*(psf()), FileLocker::Read);
2119 0 : StokesImageUtil::FitGaussianPSF( *(psf()), beam, psfcutoff);
2120 0 : }
2121 : }
2122 0 : catch(AipsError &x)
2123 : {
2124 : // LogIO os( LogOrigin("SIImageStore","getPSFGaussian",WHERE) );
2125 : // os << "Error in fitting a Gaussian to the PSF : " << x.getMesg() << LogIO::POST;
2126 0 : throw( AipsError("Error in fitting a Gaussian to the PSF : " + x.getMesg()) );
2127 0 : }
2128 :
2129 0 : return beam;
2130 0 : }
2131 :
2132 23 : void SIImageStore::makeImageBeamSet(Float psfcutoff, const Bool forcefit)
2133 : {
2134 23 : clock_t begin = clock();
2135 :
2136 46 : LogIO os( LogOrigin("SIImageStore","getPSFGaussian",WHERE) );
2137 : // For all chans/pols, call getPSFGaussian() and put it into ImageBeamSet(chan,pol).
2138 23 : AlwaysAssert( itsImageShape.nelements() == 4, AipsError );
2139 23 : uInt nx = itsImageShape[0];
2140 23 : uInt ny = itsImageShape[1];
2141 23 : uInt npol = itsImageShape[2];
2142 23 : uInt nchan = itsImageShape[3];
2143 23 : ImageInfo ii = psf()->imageInfo();
2144 23 : ImageBeamSet iibeamset=ii.getBeamSet();
2145 23 : if(iibeamset.nchan()==nchan && iibeamset.nstokes()==npol && forcefit==False){
2146 13 : itsPSFBeams=iibeamset;
2147 13 : itsRestoredBeams=iibeamset;
2148 13 : return;
2149 : }
2150 10 : itsPSFBeams.resize( nchan, npol );
2151 10 : itsRestoredBeams.resize(nchan, npol);
2152 : // cout << "makeImBeamSet : imshape : " << itsImageShape << endl;
2153 :
2154 10 : String blankpsfs="";
2155 33 : for( uInt chanid=0; chanid<nchan;chanid++) {
2156 46 : for( uInt polid=0; polid<npol; polid++ ) {
2157 23 : LatticeLocker lock2 (*(psf()), FileLocker::Read);
2158 :
2159 23 : IPosition substart(4,0,0,polid,chanid);
2160 23 : IPosition substop(4,nx-1,ny-1,polid,chanid);
2161 23 : Slicer psfslice(substart, substop,Slicer::endIsLast);
2162 46 : SubImage<Float> subPsf( *psf() , psfslice, True );
2163 23 : GaussianBeam beam;
2164 :
2165 23 : Bool tryfit=True;
2166 :
2167 23 : LatticeExprNode le( max(subPsf) );
2168 23 : tryfit = le.getFloat()>0.0;
2169 23 : if(tryfit)
2170 : {
2171 : try
2172 : {
2173 15 : StokesImageUtil::FitGaussianPSF( subPsf, beam,psfcutoff );
2174 15 : itsPSFBeams.setBeam( chanid, polid, beam );
2175 15 : itsRestoredBeams.setBeam(chanid, polid, beam);
2176 : }
2177 0 : catch(AipsError &x)
2178 : {
2179 0 : os << LogIO::WARN << "[Chan" << chanid << ":Pol" << polid << "] Error Gaussian fit to PSF : " << x.getMesg() ;
2180 : // os << LogIO::POST;
2181 0 : os << " : Setting restoring beam to largest valid beam." << LogIO::POST;
2182 0 : }
2183 : }
2184 : else
2185 : {
2186 : // os << LogIO::WARN << "[Chan" << chanid << ":Pol" << polid << "] PSF is blank. Setting null restoring beam." << LogIO::POST ;
2187 8 : blankpsfs += "[C" +String::toString(chanid) + ":P" + String::toString(polid) + "] ";
2188 : }
2189 :
2190 23 : }// end of pol loop
2191 : }// end of chan loop
2192 :
2193 10 : if( blankpsfs.length() >0 )
2194 8 : os << LogIO::WARN << "PSF is blank for" << blankpsfs << LogIO::POST;
2195 :
2196 : //// Replace null (and bad) beams with the good one.
2197 : ////GaussianBeam maxbeam = findGoodBeam(True);
2198 :
2199 : //// Replace null beams by a tiny tiny beam, just to get past the ImageInfo restriction that
2200 : //// all planes must have non-null beams.
2201 :
2202 10 : GaussianBeam defaultbeam=itsPSFBeams.getMaxAreaBeam();
2203 : ///many of the unittests in tsdimaging seem to depend on having 0 area beams
2204 : ///which throws and exception when it is stored in the image
2205 : ///(so setting them to some small number)!
2206 10 : if(defaultbeam.getArea("rad2")==0.0){
2207 0 : Quantity majax(1e-06,"arcsec"),minax(1e-06,"arcsec"),pa(0.0,"deg");
2208 0 : defaultbeam.setMajorMinor(majax,minax);
2209 0 : defaultbeam.setPA(pa);
2210 0 : }
2211 33 : for( uInt chanid=0; chanid<nchan;chanid++) {
2212 46 : for( uInt polid=0; polid<npol; polid++ ) {
2213 23 : if( (itsPSFBeams.getBeam(chanid, polid)).isNull() )
2214 8 : { itsPSFBeams.setBeam( chanid, polid, defaultbeam );
2215 8 : itsRestoredBeams.setBeam( chanid, polid, defaultbeam );
2216 : }
2217 : }// end of pol loop
2218 : }// end of chan loop
2219 :
2220 : /*
2221 : //// Fill in gaps if there are any --- with the MAX Area beam.
2222 : ///// GaussianBeam maxbeam = itsPSFBeams.getMaxAreaBeam();
2223 : if( maxbeam.isNull() ) {
2224 : os << LogIO::WARN << "No planes have non-zero restoring beams. Forcing artificial 1.0arcsec beam." << LogIO::POST;
2225 : Quantity majax(1.0,"arcsec"),minax(1.0,"arcsec"),pa(0.0,"deg");
2226 : maxbeam.setMajorMinor(majax,minax);
2227 : maxbeam.setPA(pa);
2228 : }
2229 : else {
2230 : for( Int chanid=0; chanid<nchan;chanid++) {
2231 : for( Int polid=0; polid<npol; polid++ ) {
2232 : if( (itsPSFBeams.getBeam(chanid, polid)).isNull() )
2233 : { itsPSFBeams.setBeam( chanid, polid, maxbeam ); }
2234 : }// end of pol loop
2235 : }// end of chan loop
2236 : }
2237 : */
2238 :
2239 :
2240 : /// For lack of a better place, store this inside the PSF image. To be read later and used to restore
2241 :
2242 10 : ii.setBeams( itsPSFBeams );
2243 : {
2244 10 : LatticeLocker lock1(*(psf()), FileLocker::Write);
2245 10 : psf()->setImageInfo(ii);
2246 10 : psf()->unlock();
2247 10 : }
2248 10 : clock_t end = clock();
2249 10 : os << LogIO::NORMAL << "Time to fit Gaussian to PSF " << double(end - begin) / CLOCKS_PER_SEC << LogIO::POST;
2250 49 : }// end of make beam set
2251 :
2252 :
2253 0 : ImageBeamSet SIImageStore::getChannelBeamSet(const Int channel){
2254 :
2255 0 : return getChannelSliceBeamSet(channel, channel);
2256 : }
2257 :
2258 :
2259 0 : ImageBeamSet SIImageStore::getChannelSliceBeamSet(const Int begChan, const Int endChan){
2260 0 : ImageBeamSet bs=getBeamSet();
2261 0 : if(bs.shape()[0]==1)
2262 0 : return bs;
2263 0 : if(begChan > endChan || begChan <0)
2264 0 : throw(AipsError("Inconsistent slice of beam in channel requested"));
2265 0 : if(bs.shape()[0] < (endChan-1))
2266 0 : throw(AipsError("beam of channel "+String::toString(endChan)+" does not exist"));
2267 0 : IPosition blc(2, begChan, 0);
2268 0 : IPosition trc(2, endChan, bs.shape()[1]-1);
2269 0 : Matrix<GaussianBeam> sliceBeam=bs.getBeams()(blc, trc);
2270 0 : ImageBeamSet subBeamSet(sliceBeam);
2271 0 : return subBeamSet;
2272 :
2273 0 : }
2274 7 : void SIImageStore::setBeamSet(const ImageBeamSet& bs){
2275 :
2276 7 : itsPSFBeams=bs;
2277 7 : }
2278 :
2279 13 : ImageBeamSet SIImageStore::getBeamSet(Float psfcutoff)
2280 : {
2281 13 : IPosition beamshp = itsPSFBeams.shape();
2282 13 : AlwaysAssert( beamshp.nelements()==2 , AipsError );
2283 13 : if( beamshp[0]==0 || beamshp[1]==0 ) {makeImageBeamSet(psfcutoff);}
2284 26 : return itsPSFBeams;
2285 13 : }
2286 :
2287 10 : void SIImageStore::printBeamSet(Bool verbose)
2288 : {
2289 20 : LogIO os( LogOrigin("SIImageStore","printBeamSet",WHERE) );
2290 10 : AlwaysAssert( itsImageShape.nelements() == 4, AipsError );
2291 10 : if( itsImageShape[3] == 1 && itsImageShape[2]==1 )
2292 : {
2293 2 : GaussianBeam beam = itsPSFBeams.getBeam();
2294 2 : os << "Beam : " << beam.getMajor(Unit("arcsec")) << " arcsec, " << beam.getMinor(Unit("arcsec"))<< " arcsec, " << beam.getPA(Unit("deg")) << " deg" << LogIO::POST;
2295 2 : }
2296 : else
2297 : {
2298 : // per CAS-11415, verbose=True when restoringbeam='common'
2299 8 : if( verbose )
2300 : {
2301 0 : ostringstream oss;
2302 0 : oss<<"Beam";
2303 0 : Int nchan = itsImageShape[3];
2304 0 : for( Int chanid=0; chanid<nchan;chanid++) {
2305 0 : Int polid=0;
2306 : // for( Int polid=0; polid<npol; polid++ ) {
2307 0 : GaussianBeam beam = itsPSFBeams.getBeam( chanid, polid );
2308 0 : oss << " [C" << chanid << "]: " << beam.getMajor(Unit("arcsec")) << " arcsec, " << beam.getMinor(Unit("arcsec"))<< " arcsec, " << beam.getPA(Unit("deg")) << " deg";
2309 0 : }//for chanid
2310 0 : os << oss.str() << LogIO::POST;
2311 0 : }
2312 : else
2313 : {
2314 : // TODO : Enable this, when this function doesn't complain about 0 rest freq.
2315 : // or when rest freq is never zero !
2316 : try{
2317 8 : itsPSFBeams.summarize( os, False, itsCoordSys );
2318 : // per CAS-11415 request, not turn on this one (it prints out per-channel beam in each line in the logger)
2319 : //itsPSFBeams.summarize( os, verbose, itsCoordSys );
2320 : }
2321 0 : catch(AipsError &x)
2322 : {
2323 0 : os << LogIO::WARN << "Error while printing (compact) restoring beam summary : " << x.getMesg() << LogIO::POST;
2324 0 : os << "Printing long summary" << LogIO::POST;
2325 :
2326 0 : AlwaysAssert( itsImageShape.nelements() == 4, AipsError );
2327 : //Int npol = itsImageShape[2];
2328 0 : Int nchan = itsImageShape[3];
2329 0 : for( Int chanid=0; chanid<nchan;chanid++) {
2330 0 : Int polid=0;
2331 : // for( Int polid=0; polid<npol; polid++ ) {
2332 0 : GaussianBeam beam = itsPSFBeams.getBeam( chanid, polid );
2333 0 : os << "Beam [C" << chanid << "]: " << beam.getMajor(Unit("arcsec")) << " arcsec, " << beam.getMinor(Unit("arcsec"))<< " arcsec, " << beam.getPA(Unit("deg")) << " deg" << LogIO::POST;
2334 : //}//for polid
2335 0 : }//for chanid
2336 0 : }// catch
2337 : }
2338 : }
2339 10 : }
2340 :
2341 : /////////////////////////////// Restore all planes.
2342 :
2343 6 : void SIImageStore::restore(GaussianBeam& rbeam, String& usebeam, uInt term, Float psfcutoff)
2344 : {
2345 12 : LogIO os( LogOrigin("SIImageStore","restore",WHERE) );
2346 : // << ". Optionally, PB-correct too." << LogIO::POST;
2347 :
2348 6 : AlwaysAssert( itsImageShape.nelements() == 4, AipsError );
2349 6 : Int nx = itsImageShape[0];
2350 6 : Int ny = itsImageShape[1];
2351 6 : Int npol = itsImageShape[2];
2352 6 : Int nchan = itsImageShape[3];
2353 :
2354 : /* if( !hasResidualImage() )
2355 : {
2356 : // Cannot restore without residual/dirty image.
2357 : os << "Cannot restore without residual image" << LogIO::POST;
2358 : return;
2359 : }
2360 : */
2361 :
2362 : //// Get/fill the beamset
2363 6 : IPosition beamset = itsPSFBeams.shape();
2364 6 : AlwaysAssert( beamset.nelements()==2 , AipsError );
2365 6 : if( beamset[0] != nchan || beamset[1] != npol )
2366 : {
2367 :
2368 : // Get PSF Beams....
2369 1 : ImageInfo ii = psf()->imageInfo();
2370 1 : itsPSFBeams = ii.getBeamSet();
2371 1 : itsRestoredBeams=itsPSFBeams;
2372 1 : IPosition beamset2 = itsPSFBeams.shape();
2373 :
2374 1 : AlwaysAssert( beamset2.nelements()==2 , AipsError );
2375 1 : if( beamset2[0] != nchan || beamset2[1] != npol )
2376 : {
2377 : // Make new beams.
2378 0 : os << LogIO::WARN << "Couldn't find pre-computed restoring beams. Re-fitting." << LogIO::POST;
2379 0 : makeImageBeamSet(psfcutoff);
2380 : }
2381 1 : }
2382 :
2383 : // toggle for printing common beam to the log
2384 6 : Bool printcommonbeam(False);
2385 : //// Modify the beamset if needed
2386 : //// if ( rbeam is Null and usebeam=="" ) Don't do anything.
2387 : //// If rbeam is Null but usebeam=='common', calculate a common beam and set 'rbeam'
2388 : //// If rbeam is given (or exists due to 'common'), just use it.
2389 6 : if( rbeam.isNull() && usebeam=="common") {
2390 0 : os << "Getting common beam" << LogIO::POST;
2391 0 : rbeam = CasaImageBeamSet(itsPSFBeams).getCommonBeam();
2392 0 : os << "Common Beam : " << rbeam.getMajor(Unit("arcsec")) << " arcsec, " << rbeam.getMinor(Unit("arcsec"))<< " arcsec, " << rbeam.getPA(Unit("deg")) << " deg" << LogIO::POST;
2393 0 : printcommonbeam=True;
2394 : }
2395 6 : if( !rbeam.isNull() ) {
2396 : /*for( Int chanid=0; chanid<nchan;chanid++) {
2397 : for( Int polid=0; polid<npol; polid++ ) {
2398 : itsPSFBeams.setBeam( chanid, polid, rbeam );
2399 : /// Still need to add the 'common beam' option.
2400 : }//for chanid
2401 : }//for polid
2402 : */
2403 0 : itsRestoredBeams=ImageBeamSet(rbeam);
2404 0 : GaussianBeam beam = itsRestoredBeams.getBeam();
2405 :
2406 : //if commonbeam has not printed in the log
2407 0 : if (!printcommonbeam) {
2408 0 : os << "Common Beam : " << beam.getMajor(Unit("arcsec")) << " arcsec, " << beam.getMinor(Unit("arcsec"))<< " arcsec, " << beam.getPA(Unit("deg")) << " deg" << LogIO::POST;
2409 0 : printcommonbeam=True; // to avoid duplicate the info is printed to th elog
2410 : }
2411 0 : }// if rbeam not NULL
2412 : //// Done modifying beamset if needed
2413 :
2414 :
2415 : /// Before restoring, check for an empty model image and don't convolve (but still smooth residuals)
2416 : /// (for CAS-8271 : make output restored image even if .model is zero... )
2417 6 : Bool emptymodel = isModelEmpty();
2418 6 : if(emptymodel) os << LogIO::WARN << "Restoring with an empty model image. Only residuals will be processed to form the output restored image." << LogIO::POST;
2419 :
2420 :
2421 6 : LatticeLocker lock1(*(image(term)), FileLocker::Write);
2422 6 : LatticeLocker lock2(*(residual(term)), FileLocker::Write);
2423 6 : LatticeLocker lock3(*(model(term)), FileLocker::Read);
2424 : //// Use beamset to restore
2425 17 : for( Int chanid=0; chanid<nchan;chanid++) {
2426 22 : for( Int polid=0; polid<npol; polid++ ) {
2427 :
2428 11 : IPosition substart(4,0,0,polid,chanid);
2429 11 : IPosition substop(4,nx-1,ny-1,polid,chanid);
2430 11 : Slicer imslice(substart, substop,Slicer::endIsLast);
2431 22 : SubImage<Float> subRestored( *image(term) , imslice, True );
2432 22 : SubImage<Float> subModel( *model(term) , imslice, False );
2433 22 : SubImage<Float> subResidual( *residual(term) , imslice, True );
2434 :
2435 11 : GaussianBeam beam = itsRestoredBeams.getBeam( chanid, polid );;
2436 : //os << "Common Beam for chan : " << chanid << " : " << beam.getMajor(Unit("arcsec")) << " arcsec, " << beam.getMinor(Unit("arcsec"))<< " arcsec, " << beam.getPA(Unit("deg")) << " deg" << LogIO::POST;
2437 : // only print per-chan beam if the common beam is not used for restoring beam
2438 11 : if(!printcommonbeam) {
2439 11 : os << "Beam for chan : " << chanid << " : " << beam.getMajor(Unit("arcsec")) << " arcsec, " << beam.getMinor(Unit("arcsec"))<< " arcsec, " << beam.getPA(Unit("deg")) << " deg" << LogIO::POST;
2440 : }
2441 :
2442 : try
2443 : {
2444 : // Initialize restored image
2445 11 : subRestored.set(0.0);
2446 11 : if( !emptymodel ) {
2447 : // Copy model into it
2448 11 : subRestored.copyData( LatticeExpr<Float>( subModel ) );
2449 : // Smooth model by beam
2450 11 : StokesImageUtil::Convolve( subRestored, beam);
2451 : }
2452 : // Add residual image
2453 11 : if( !rbeam.isNull() || usebeam == "common") // If need to rescale residuals, make a copy and do it.
2454 : {
2455 : // rescaleResolution(chanid, subResidual, beam, itsPSFBeams.getBeam(chanid, polid));
2456 0 : TempImage<Float> tmpSubResidualCopy( IPosition(4,nx,ny,1,1), subResidual.coordinates());
2457 0 : tmpSubResidualCopy.copyData( subResidual );
2458 :
2459 0 : rescaleResolution(chanid, tmpSubResidualCopy, beam, itsPSFBeams.getBeam(chanid, polid));
2460 0 : subRestored.copyData( LatticeExpr<Float>( subRestored + tmpSubResidualCopy ) );
2461 0 : }
2462 : else// if no need to rescale residuals, just add the residuals.
2463 : {
2464 :
2465 :
2466 11 : subRestored.copyData( LatticeExpr<Float>( subRestored + subResidual ) );
2467 :
2468 : }
2469 :
2470 : }
2471 0 : catch(AipsError &x)
2472 : {
2473 0 : throw( AipsError("Restoration Error in chan" + String::toString(chanid) + ":pol" + String::toString(polid) + " : " + x.getMesg() ) );
2474 0 : }
2475 :
2476 11 : }// end of pol loop
2477 : }// end of chan loop
2478 :
2479 : try
2480 : {
2481 : //MSK//
2482 6 : if( hasPB() )
2483 : {
2484 6 : if( (image(term)->getDefaultMask()).matches("mask0") ) removeMask( image(term) );
2485 6 : copyMask(residual(term),image(term));
2486 : }
2487 :
2488 : // if(hasPB()){copyMask(residual(term),image(term));}
2489 6 : ImageInfo iminf = image(term)->imageInfo();
2490 : //iminf.setBeams( itsRestoredBeams);
2491 :
2492 6 : os << "Beam Set : Single beam : " << itsRestoredBeams.hasSingleBeam() << " Multi-beam : " << itsRestoredBeams.hasMultiBeam() << LogIO::DEBUG2;
2493 :
2494 6 : iminf.removeRestoringBeam();
2495 :
2496 6 : if( itsRestoredBeams.hasSingleBeam() )
2497 2 : { iminf.setRestoringBeam( itsRestoredBeams.getBeam() );}
2498 : else
2499 4 : {iminf.setBeams( itsRestoredBeams);}
2500 :
2501 6 : image(term)->setImageInfo(iminf);
2502 :
2503 6 : }
2504 0 : catch(AipsError &x)
2505 : {
2506 0 : throw( AipsError("Restoration Error : " + x.getMesg() ) );
2507 0 : }
2508 :
2509 6 : }// end of restore()
2510 :
2511 0 : GaussianBeam SIImageStore::findGoodBeam()
2512 : {
2513 0 : LogIO os( LogOrigin("SIImageStore","findGoodBeam",WHERE) );
2514 0 : IPosition beamshp = itsPSFBeams.shape();
2515 0 : AlwaysAssert( beamshp.nelements()==2 , AipsError );
2516 :
2517 : /*
2518 : if( beamshp[0] != nchan || beamshp[1] != npol )
2519 : {
2520 : // Make new beams.
2521 : os << LogIO::WARN << "Couldn't find pre-computed restoring beams. Re-fitting." << LogIO::POST;
2522 : makeImageBeamSet();
2523 : }
2524 : */
2525 :
2526 0 : Vector<Float> areas(beamshp[0]*beamshp[1]);
2527 0 : Vector<Float> axrat(beamshp[0]*beamshp[1]);
2528 0 : areas=0.0; axrat=1.0;
2529 0 : Vector<Bool> flags( areas.nelements() );
2530 0 : flags=False;
2531 :
2532 0 : Int cnt=0;
2533 0 : for( Int chanid=0; chanid<beamshp[0];chanid++) {
2534 0 : for( Int polid=0; polid<beamshp[1]; polid++ ) {
2535 0 : GaussianBeam beam = itsPSFBeams(chanid, polid);
2536 0 : if( !beam.isNull() && beam.getMajor(Unit("arcsec"))>1.1e-06 ) // larger than default filler beam.
2537 : {
2538 0 : areas[cnt] = beam.getArea( Unit("arcsec2") );
2539 0 : axrat[cnt] = beam.getMajor( Unit("arcsec") ) / beam.getMinor( Unit("arcsec") );
2540 : }
2541 : else {
2542 0 : flags[cnt] = True;
2543 : }
2544 0 : cnt++;
2545 0 : }//for chanid
2546 : }//for polid
2547 :
2548 0 : Vector<Float> fit( areas.nelements() );
2549 0 : Vector<Float> fitaxr( areas.nelements() );
2550 0 : for (Int loop=0;loop<5;loop++) {
2551 : /// Filter on outliers in PSF beam area
2552 0 : lineFit( areas, flags, fit, 0, areas.nelements()-1 );
2553 0 : Float sd = calcStd( areas , flags, fit );
2554 0 : for (uInt i=0;i<areas.nelements();i++) {
2555 0 : if( fabs( areas[i] - fit[i] ) > 3*sd ) flags[i]=True;
2556 : }
2557 : /// Filter on outliers in PSF axial ratio
2558 0 : lineFit( axrat, flags, fitaxr, 0, areas.nelements()-1 );
2559 0 : Float sdaxr = calcStd( axrat , flags, fitaxr );
2560 0 : for (uInt i=0;i<areas.nelements();i++) {
2561 0 : if( fabs( axrat[i] - fitaxr[i] ) > 3*sdaxr ) flags[i]=True;
2562 : }
2563 : }
2564 : // cout << "Original areas : " << areas << endl;
2565 : // cout << "Original axrats : " << axrat << endl;
2566 : // cout << "Flags : " << flags << endl;
2567 :
2568 : // Find max area good beam.
2569 0 : GaussianBeam goodbeam;
2570 0 : Int cid=0,pid=0;
2571 0 : Float maxval=0.0;
2572 0 : cnt=0;
2573 0 : for( Int chanid=0; chanid<beamshp[0];chanid++) {
2574 0 : for( Int polid=0; polid<beamshp[1]; polid++ ) {
2575 0 : if( flags[cnt] == False ){
2576 0 : if( areas[cnt] > maxval ) {maxval = areas[cnt]; goodbeam = itsPSFBeams.getBeam(chanid,polid);cid=chanid;pid=polid;}
2577 : }
2578 0 : cnt++;
2579 : }//polid
2580 : }//chanid
2581 :
2582 0 : os << "Picking common beam from C"<<cid<<":P"<<pid<<" : " << goodbeam.getMajor(Unit("arcsec")) << " arcsec, " << goodbeam.getMinor(Unit("arcsec"))<< " arcsec, " << goodbeam.getPA(Unit("deg")) << " deg" << LogIO::POST;
2583 :
2584 0 : Bool badbeam=False;
2585 0 : for(uInt i=0;i<flags.nelements();i++){if(flags[i]==True) badbeam=True;}
2586 :
2587 0 : if( badbeam == True )
2588 : {
2589 0 : os << "(Ignored beams from :";
2590 0 : cnt=0;
2591 0 : for( Int chanid=0; chanid<beamshp[0];chanid++) {
2592 0 : for( Int polid=0; polid<beamshp[1]; polid++ ) {
2593 0 : if( flags[cnt] == True ){
2594 0 : os << " C"<<chanid<<":P"<<polid;
2595 : }
2596 0 : cnt++;
2597 : }//polid
2598 : }//chanid
2599 0 : os << " as outliers either by area or by axial ratio)" << LogIO::POST;
2600 : }
2601 :
2602 :
2603 : /*
2604 : // Replace 'bad' psfs with the chosen one.
2605 : if( goodbeam.isNull() ) {
2606 : os << LogIO::WARN << "No planes have non-zero restoring beams. Forcing artificial 1.0arcsec beam." << LogIO::POST;
2607 : Quantity majax(1.0,"arcsec"),minax(1.0,"arcsec"),pa(0.0,"deg");
2608 : goodbeam.setMajorMinor(majax,minax);
2609 : goodbeam.setPA(pa);
2610 : }
2611 : else {
2612 : cnt=0;
2613 : for( Int chanid=0; chanid<nchan;chanid++) {
2614 : for( Int polid=0; polid<npol; polid++ ) {
2615 : if( flags[cnt]==True )
2616 : { itsPSFBeams.setBeam( chanid, polid, goodbeam ); }
2617 : cnt++;
2618 : }// end of pol loop
2619 : }// end of chan loop
2620 : }
2621 : */
2622 :
2623 0 : return goodbeam;
2624 0 : }// end of findGoodBeam
2625 :
2626 : ///////////////////////// Funcs to calculate robust mean and fit, taking into account 'flagged' points.
2627 0 : void SIImageStore :: lineFit(Vector<Float> &data, Vector<Bool> &flag, Vector<Float> &fit, uInt lim1, uInt lim2)
2628 : {
2629 0 : float Sx = 0, Sy = 0, Sxx = 0, Sxy = 0, S = 0, a, b, sd, mn;
2630 :
2631 0 : mn = calcMean(data, flag);
2632 0 : sd = calcStd (data, flag, mn);
2633 :
2634 0 : for (uInt i = lim1; i <= lim2; i++)
2635 : {
2636 0 : if (flag[i] == False) // if unflagged
2637 : {
2638 0 : S += 1 / (sd * sd);
2639 0 : Sx += i / (sd * sd);
2640 0 : Sy += data[i] / (sd * sd);
2641 0 : Sxx += (i * i) / (sd * sd);
2642 0 : Sxy += (i * data[i]) / (sd * sd);
2643 : }
2644 : }
2645 0 : a = (Sxx * Sy - Sx * Sxy) / (S * Sxx - Sx * Sx);
2646 0 : b = (S * Sxy - Sx * Sy) / (S * Sxx - Sx * Sx);
2647 :
2648 0 : for (uInt i = lim1; i <= lim2; i++)
2649 0 : fit[i] = a + b * i;
2650 :
2651 0 : }
2652 : /* Calculate the MEAN of 'vect' ignoring values flagged in 'flag' */
2653 0 : Float SIImageStore :: calcMean(Vector<Float> &vect, Vector<Bool> &flag)
2654 : {
2655 0 : Float mean=0;
2656 0 : Int cnt=0;
2657 0 : for(uInt i=0;i<vect.nelements();i++)
2658 0 : if(flag[i]==False)
2659 : {
2660 0 : mean += vect[i];
2661 0 : cnt++;
2662 : }
2663 0 : if(cnt==0) cnt=1;
2664 0 : return mean/cnt;
2665 : }
2666 0 : Float SIImageStore :: calcStd(Vector<Float> &vect, Vector<Bool> &flag, Vector<Float> &fit)
2667 : {
2668 0 : Float std=0;
2669 0 : uInt n=0,cnt=0;
2670 0 : n = vect.nelements() < fit.nelements() ? vect.nelements() : fit.nelements();
2671 0 : for(uInt i=0;i<n;i++)
2672 0 : if(flag[i]==False)
2673 : {
2674 0 : cnt++;
2675 0 : std += (vect[i]-fit[i])*(vect[i]-fit[i]);
2676 : }
2677 0 : if(cnt==0) cnt=1;
2678 0 : return sqrt(std/cnt);
2679 :
2680 : }
2681 0 : Float SIImageStore :: calcStd(Vector<Float> &vect, Vector<Bool> &flag, Float mean)
2682 : {
2683 0 : Float std=0;
2684 0 : uInt cnt=0;
2685 0 : for(uInt i=0;i<vect.nelements();i++)
2686 0 : if(flag[i]==False)
2687 : {
2688 0 : cnt++;
2689 0 : std += (vect[i]-mean)*(vect[i]-mean);
2690 : }
2691 0 : return sqrt(std/cnt);
2692 : }
2693 :
2694 : ///////////////////////// End of Funcs to calculate robust mean and fit.
2695 :
2696 :
2697 :
2698 : /*
2699 : GaussianBeam SIImageStore::restorePlane()
2700 : {
2701 :
2702 : LogIO os( LogOrigin("SIImageStore","restorePlane",WHERE) );
2703 : // << ". Optionally, PB-correct too." << LogIO::POST;
2704 :
2705 : Bool validbeam=False;
2706 : GaussianBeam beam;
2707 : try
2708 : {
2709 : // Fit a Gaussian to the PSF.
2710 : beam = getPSFGaussian();
2711 : validbeam = True;
2712 : }
2713 : catch(AipsError &x)
2714 : {
2715 : os << LogIO::WARN << "Beam fit error : " + x.getMesg() << LogIO::POST;
2716 : }
2717 :
2718 : try
2719 : {
2720 : if( validbeam==True )
2721 : {
2722 : //os << "[" << itsImageName << "] " ; // Add when parent image name is available.
2723 : //os << "Restore with beam : " << beam.getMajor(Unit("arcmin")) << " arcmin, " << beam.getMinor(Unit("arcmin"))<< " arcmin, " << beam.getPA(Unit("deg")) << " deg" << LogIO::POST;
2724 :
2725 : // Initialize restored image
2726 : image()->set(0.0);
2727 : // Copy model into it
2728 : image()->copyData( LatticeExpr<Float>( *(model()) ) );
2729 : // Smooth model by beam
2730 : StokesImageUtil::Convolve( *(image()), beam);
2731 : // Add residual image
2732 : image()->copyData( LatticeExpr<Float>( *(image()) + *(residual()) ) );
2733 :
2734 : // Set restoring beam into the image
2735 : ImageInfo ii = image()->imageInfo();
2736 : //ii.setRestoringBeam(beam);
2737 : ii.setBeams(beam);
2738 : image()->setImageInfo(ii);
2739 : }
2740 : }
2741 : catch(AipsError &x)
2742 : {
2743 : throw( AipsError("Restoration Error : " + x.getMesg() ) );
2744 : }
2745 :
2746 : return beam;
2747 :
2748 : }
2749 : */
2750 :
2751 0 : void SIImageStore::pbcor(uInt term)
2752 : {
2753 :
2754 0 : LogIO os( LogOrigin("SIImageStore","pbcor",WHERE) );
2755 :
2756 0 : if( !hasRestored() || !hasPB() )
2757 : {
2758 : // Cannot pbcor without restored image and pb
2759 0 : os << LogIO::WARN << "Cannot pbcor without restored image and pb" << LogIO::POST;
2760 0 : return;
2761 : }
2762 0 : LatticeLocker lock1(*(image(term)), FileLocker::Write);
2763 0 : LatticeLocker lock2(*(pb(term)), FileLocker::Write);
2764 0 : LatticeLocker lock3(*(imagepbcor(term)), FileLocker::Write);
2765 :
2766 0 : for(Int pol=0; pol<itsImageShape[2]; pol++)
2767 : {
2768 0 : for(Int chan=0; chan<itsImageShape[3]; chan++)
2769 : {
2770 :
2771 0 : CountedPtr<ImageInterface<Float> > restoredsubim=makeSubImage(0,1,
2772 0 : chan, itsImageShape[3],
2773 0 : pol, itsImageShape[2],
2774 0 : *image(term) );
2775 0 : CountedPtr<ImageInterface<Float> > pbsubim=makeSubImage(0,1,
2776 0 : chan, itsImageShape[3],
2777 0 : pol, itsImageShape[2],
2778 0 : *pb() );
2779 :
2780 0 : CountedPtr<ImageInterface<Float> > pbcorsubim=makeSubImage(0,1,
2781 0 : chan, itsImageShape[3],
2782 0 : pol, itsImageShape[2],
2783 0 : *imagepbcor(term) );
2784 :
2785 :
2786 0 : LatticeExprNode pbmax( max( *pbsubim ) );
2787 0 : Float pbmaxval = pbmax.getFloat();
2788 :
2789 0 : if( pbmaxval<=0.0 )
2790 : {
2791 0 : os << LogIO::WARN << "Skipping PBCOR for C:" << chan << " P:" << pol << " because pb max is zero " << LogIO::POST;
2792 0 : pbcorsubim->set(0.0);
2793 : }
2794 : else
2795 : {
2796 :
2797 0 : LatticeExpr<Float> thepbcor( iif( *(pbsubim) > 0.0 , (*(restoredsubim))/(*(pbsubim)) , 0.0 ) );
2798 0 : pbcorsubim->copyData( thepbcor );
2799 :
2800 0 : }// if not zero
2801 0 : }//chan
2802 : }//pol
2803 :
2804 : // Copy over the PB mask.
2805 0 : if((imagepbcor(term)->getDefaultMask()=="") && hasPB())
2806 0 : {copyMask(pb(),imagepbcor(term));}
2807 :
2808 : // Set restoring beam info
2809 0 : ImageInfo iminf = image(term)->imageInfo();
2810 : //iminf.setBeams( itsRestoredBeams );
2811 0 : imagepbcor(term)->setImageInfo(iminf);
2812 :
2813 0 : }// end pbcor
2814 :
2815 0 : Matrix<Float> SIImageStore::getSumWt(ImageInterface<Float>& target)
2816 : {
2817 0 : Record miscinfo = target.miscInfo();
2818 :
2819 0 : Matrix<Float> sumwt;
2820 0 : sumwt.resize();
2821 0 : if( miscinfo.isDefined("sumwt")
2822 0 : && (miscinfo.dataType("sumwt")==TpArrayFloat || miscinfo.dataType("sumwt")==TpArrayDouble ) )
2823 0 : { miscinfo.get( "sumwt" , sumwt ); }
2824 0 : else { sumwt.resize( IPosition(2, target.shape()[2], target.shape()[3] ) ); sumwt = 1.0; }
2825 :
2826 0 : return sumwt;
2827 0 : }
2828 :
2829 0 : void SIImageStore::setSumWt(ImageInterface<Float>& target, Matrix<Float>& sumwt)
2830 : {
2831 0 : Record miscinfo = target.miscInfo();
2832 0 : miscinfo.define("sumwt", sumwt);
2833 0 : LatticeLocker lock1(target, FileLocker::Write);
2834 0 : target.setMiscInfo( miscinfo );
2835 0 : }
2836 :
2837 :
2838 23 : Bool SIImageStore::getUseWeightImage(ImageInterface<Float>& target)
2839 : {
2840 23 : Record miscinfo = target.miscInfo();
2841 : Bool useweightimage;
2842 23 : if( miscinfo.isDefined("useweightimage") && miscinfo.dataType("useweightimage")==TpBool )
2843 23 : { miscinfo.get( "useweightimage", useweightimage ); }
2844 0 : else { useweightimage = False; }
2845 :
2846 23 : return useweightimage;
2847 23 : }
2848 : /*
2849 : Bool SIImageStore::getUseWeightImage()
2850 : {
2851 : if( ! itsParentSumWt )
2852 : return False;
2853 : else
2854 : return getUseWeightImage( *itsParentSumWt );
2855 : }
2856 : */
2857 156 : void SIImageStore::setUseWeightImage(ImageInterface<Float>& target, Bool useweightimage)
2858 : {
2859 156 : Record miscinfo = target.miscInfo();
2860 156 : miscinfo.define("useweightimage", useweightimage);
2861 156 : LatticeLocker lock1(target, FileLocker::Write);
2862 156 : target.setMiscInfo( miscinfo );
2863 156 : }
2864 :
2865 :
2866 :
2867 20 : Bool SIImageStore::divideImageByWeightVal( ImageInterface<Float>& target )
2868 : {
2869 :
2870 20 : Array<Float> lsumwt;
2871 20 : sumwt()->get( lsumwt , False ); // For MT, this will always pick the zeroth sumwt, which it should.
2872 20 : LatticeLocker lock2(target, FileLocker::Write);
2873 :
2874 20 : IPosition imshape = target.shape();
2875 :
2876 : //cerr << " SumWt : " << lsumwt << " sumwtshape : " << lsumwt.shape() << " image shape : " << imshape << endl;
2877 :
2878 20 : AlwaysAssert( lsumwt.shape()[2] == imshape[2] , AipsError ); // polplanes
2879 20 : AlwaysAssert( lsumwt.shape()[3] == imshape[3] , AipsError ); // chanplanes
2880 :
2881 20 : Bool div=False; // flag to signal if division actually happened, or weights are all 1.0
2882 :
2883 40 : for(Int pol=0; pol<lsumwt.shape()[2]; pol++)
2884 : {
2885 64 : for(Int chan=0; chan<lsumwt.shape()[3]; chan++)
2886 : {
2887 44 : IPosition pos(4,0,0,pol,chan);
2888 44 : if( lsumwt(pos) != 1.0 )
2889 : {
2890 : // SubImage<Float>* subim=makePlane( chan, True ,pol, True, target );
2891 : std::shared_ptr<ImageInterface<Float> > subim=makeSubImage(0,1,
2892 44 : chan, lsumwt.shape()[3],
2893 44 : pol, lsumwt.shape()[2],
2894 88 : target );
2895 44 : if ( lsumwt(pos) > 1e-07 ) {
2896 52 : LatticeExpr<Float> le( (*subim)/lsumwt(pos) );
2897 26 : subim->copyData( le );
2898 26 : }
2899 : else {
2900 18 : subim->set(0.0);
2901 : }
2902 44 : div=True;
2903 44 : }
2904 44 : }
2905 : }
2906 :
2907 : // if( div==True ) cout << "Div image by sumwt : " << lsumwt << endl;
2908 : // else cout << "Already normalized" << endl;
2909 :
2910 : // lsumwt = 1.0; setSumWt( target , lsumwt );
2911 :
2912 20 : return div;
2913 20 : }
2914 :
2915 9 : void SIImageStore::normPSF(Int term)
2916 : {
2917 :
2918 18 : for(Int pol=0; pol<itsImageShape[2]; pol++)
2919 : {
2920 27 : for(Int chan=0; chan<itsImageShape[3]; chan++)
2921 : {
2922 : /// IPosition center(4,itsImageShape[0]/2,itsImageShape[1]/2,pol,chan);
2923 :
2924 : std::shared_ptr<ImageInterface<Float> > subim=makeSubImage(0,1,
2925 36 : chan, itsImageShape[3],
2926 18 : pol, itsImageShape[2],
2927 36 : (*psf(term)) );
2928 :
2929 : std::shared_ptr<ImageInterface<Float> > subim0=makeSubImage(0,1,
2930 36 : chan, itsImageShape[3],
2931 18 : pol, itsImageShape[2],
2932 36 : (*psf(0)) );
2933 :
2934 18 : LatticeLocker lock1(*(subim), FileLocker::Write);
2935 :
2936 18 : LatticeExprNode themax( max(*(subim0)) );
2937 18 : Float maxim = themax.getFloat();
2938 :
2939 18 : if ( maxim > 1e-07 )
2940 : {
2941 24 : LatticeExpr<Float> normed( (*(subim)) / maxim );
2942 12 : subim->copyData( normed );
2943 12 : }
2944 : else
2945 : {
2946 6 : subim->set(0.0);
2947 : }
2948 18 : }//chan
2949 : }//pol
2950 :
2951 9 : }
2952 :
2953 6 : void SIImageStore::calcSensitivity()
2954 : {
2955 12 : LogIO os( LogOrigin("SIImageStore","calcSensitivity",WHERE) );
2956 :
2957 6 : Array<Float> lsumwt;
2958 6 : sumwt()->get( lsumwt , False ); // For MT, this will always pick the zeroth sumwt, which it should.
2959 :
2960 6 : IPosition shp( lsumwt.shape() );
2961 : //cout << "Sumwt shape : " << shp << " : " << lsumwt << endl;
2962 : //AlwaysAssert( shp.nelements()==4 , AipsError );
2963 :
2964 6 : os << "[" << itsImageName << "] Theoretical sensitivity (Jy/bm):" ;
2965 :
2966 6 : IPosition it(4,0,0,0,0);
2967 12 : for ( it[0]=0; it[0]<shp[0]; it[0]++)
2968 12 : for ( it[1]=0; it[1]<shp[1]; it[1]++)
2969 12 : for ( it[2]=0; it[2]<shp[2]; it[2]++)
2970 21 : for ( it[3]=0; it[3]<shp[3]; it[3]++)
2971 : {
2972 15 : if( shp[0]>1 ){os << "f"<< it[0]+(it[1]*shp[0]) << ":" ;}
2973 15 : if( shp[3]>1 ) { os << "c"<< it[3] << ":"; }
2974 15 : if( shp[2]>1 ) { os << "p"<< it[2]<< ":" ; }
2975 15 : if( lsumwt( it ) > 1e-07 )
2976 : {
2977 9 : os << 1.0/(sqrt(lsumwt(it))) << " " ;
2978 : }
2979 : else
2980 : {
2981 6 : os << "none" << " ";
2982 : }
2983 : }
2984 :
2985 6 : os << LogIO::POST;
2986 :
2987 : // Array<Float> sens = 1.0/sqrtsumwt;
2988 :
2989 :
2990 6 : }
2991 :
2992 0 : Double SIImageStore::calcFractionalBandwidth()
2993 : {
2994 0 : throw(AipsError("calcFractionalBandwidth is not implemented for SIImageStore. Only SIImageStoreMultiTerm"));
2995 : }
2996 :
2997 : //////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
2998 : //////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
2999 : //////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
3000 : /////////////////// Utility Functions to gather statistics on the imagestore.
3001 :
3002 53 : Float SIImageStore::getPeakResidual()
3003 : {
3004 106 : LogIO os( LogOrigin("SIImageStore","getPeakResidual",WHERE) );
3005 53 : LatticeLocker lock2 (*(residual()), FileLocker::Read);
3006 106 : ArrayLattice<Bool> pixelmask(residual()->getMask());
3007 106 : LatticeExpr<Float> resd(iif(pixelmask,abs(*residual()),0));
3008 : //LatticeExprNode pres( max(abs( *residual() ) ));
3009 53 : LatticeExprNode pres( max(resd) );
3010 53 : Float maxresidual = pres.getFloat();
3011 :
3012 53 : return maxresidual;
3013 53 : }
3014 :
3015 38 : Float SIImageStore::getPeakResidualWithinMask()
3016 : {
3017 76 : LogIO os( LogOrigin("SIImageStore","getPeakResidualWithinMask",WHERE) );
3018 : //Float minresmask, maxresmask, minres, maxres;
3019 : //findMinMax( residual()->get(), mask()->get(), minres, maxres, minresmask, maxresmask );
3020 :
3021 76 : ArrayLattice<Bool> pixelmask(residual()->getMask());
3022 : //findMinMaxLattice(*residual(), *mask() , pixelmask, maxres,maxresmask, minres, minresmask);
3023 76 : LatticeExpr<Float> resd(iif(((*mask()) > 0) && pixelmask ,abs((*residual())),0));
3024 38 : LatticeExprNode pres( max(resd) );
3025 38 : Float maxresidual = pres.getFloat();
3026 : //Float maxresidual=max( abs(maxresmask), abs(minresmask) );
3027 38 : return maxresidual;
3028 38 : }
3029 :
3030 : // Calculate the total model flux
3031 34 : Float SIImageStore::getModelFlux(uInt term)
3032 : {
3033 : // LogIO os( LogOrigin("SIImageStore","getModelFlux",WHERE) );
3034 34 : LatticeLocker lock2 (*(model(term)), FileLocker::Read);
3035 68 : LatticeExprNode mflux( sum( *model(term) ) );
3036 34 : Float modelflux = mflux.getFloat();
3037 : // Float modelflux = sum( model(term)->get() );
3038 :
3039 34 : return modelflux;
3040 34 : }
3041 :
3042 : // Check for non-zero model (this is different from getting model flux, for derived SIIMMT)
3043 19 : Bool SIImageStore::isModelEmpty()
3044 : {
3045 19 : if( !itsModel && (! hasModel()) ) return True;
3046 13 : else return ( fabs( getModelFlux(0) ) < 1e-08 );
3047 : }
3048 :
3049 :
3050 7 : void SIImageStore::setPSFSidelobeLevel(const Float level){
3051 :
3052 7 : itsPSFSideLobeLevel=level;
3053 7 : }
3054 : // Calculate the PSF sidelobe level...
3055 59 : Float SIImageStore::getPSFSidelobeLevel()
3056 : {
3057 118 : LogIO os( LogOrigin("SIImageStore","getPSFSidelobeLevel",WHERE) );
3058 : //cerr << "*****PSF sidelobe "<< itsPSFSideLobeLevel << endl;
3059 : /// Calculate only once, store and return for all subsequent calls.
3060 59 : if( itsPSFSideLobeLevel == 0.0 )
3061 : {
3062 :
3063 5 : ImageBeamSet thebeams = getBeamSet();
3064 5 : LatticeLocker lock2 (*(psf()), FileLocker::Read);
3065 :
3066 : //------------------------------------------------------------
3067 5 : IPosition oneplaneshape( itsImageShape );
3068 5 : AlwaysAssert( oneplaneshape.nelements()==4, AipsError );
3069 5 : oneplaneshape[2]=1; oneplaneshape[3]=1;
3070 5 : TempImage<Float> psfbeam( oneplaneshape, itsCoordSys );
3071 :
3072 : // In a loop through channels, subtract out or mask out the main lobe
3073 5 : Float allmin=0.0, allmax=0.0;
3074 10 : for(Int pol=0; pol<itsImageShape[2]; pol++)
3075 : {
3076 15 : for(Int chan=0; chan<itsImageShape[3]; chan++)
3077 : {
3078 : std::shared_ptr<ImageInterface<Float> > onepsf=makeSubImage(0,1,
3079 20 : chan, itsImageShape[3],
3080 10 : pol, itsImageShape[2],
3081 20 : (*psf()) );
3082 :
3083 :
3084 10 : GaussianBeam beam = thebeams.getBeam( chan, pol );
3085 10 : Vector<Float> abeam(3); // Holds bmaj, bmin, pa in asec, asec, deg
3086 10 : abeam[0] = beam.getMajor().get("arcsec").getValue() * C::arcsec;
3087 10 : abeam[1] = beam.getMinor().get("arcsec").getValue() * C::arcsec;
3088 10 : abeam[2] = (beam.getPA().get("deg").getValue() + 90.0)* C::degree;
3089 :
3090 : //cout << "Beam : " << abeam << endl;
3091 :
3092 10 : StokesImageUtil::MakeGaussianPSF( psfbeam, abeam, False);
3093 :
3094 : // storeImg( String("psfbeam.im"), psfbeam );
3095 :
3096 : //Subtract from PSF plane
3097 20 : LatticeExpr<Float> delobed( (*onepsf) - psfbeam );
3098 :
3099 : // For debugging
3100 : //onepsf->copyData( delobed );
3101 :
3102 : //Calc max and min and accumulate across channels.
3103 :
3104 10 : LatticeExprNode minval_le( min( *onepsf ) );
3105 10 : LatticeExprNode maxval_le( max( delobed ) );
3106 :
3107 10 : Float minval = minval_le.getFloat();
3108 10 : Float maxval = maxval_le.getFloat();
3109 :
3110 10 : if( minval < allmin ) allmin = minval;
3111 10 : if( maxval > allmax ) allmax = maxval;
3112 :
3113 : //cout << "Chan : " << chan << " minval : " << minval << " maxval : " << maxval << endl;
3114 :
3115 10 : }//chan
3116 : }//pol
3117 :
3118 : //------------------------------------------------------------
3119 :
3120 5 : itsPSFSideLobeLevel = max( fabs(allmin), fabs(allmax) );
3121 :
3122 : //os << "PSF min : " << allmin << " max : " << allmax << " psfsidelobelevel : " << itsPSFSideLobeLevel << LogIO::POST;
3123 :
3124 5 : }// if changed.
3125 :
3126 : // LatticeExprNode psfside( min( *psf() ) );
3127 : // itsPSFSideLobeLevel = fabs( psfside.getFloat() );
3128 :
3129 : //cout << "PSF sidelobe level : " << itsPSFSideLobeLevel << endl;
3130 59 : return itsPSFSideLobeLevel;
3131 59 : }
3132 :
3133 0 : void SIImageStore::findMinMax(const Array<Float>& lattice,
3134 : const Array<Float>& mask,
3135 : Float& minVal, Float& maxVal,
3136 : Float& minValMask, Float& maxValMask)
3137 : {
3138 0 : IPosition posmin(lattice.shape().nelements(), 0);
3139 0 : IPosition posmax(lattice.shape().nelements(), 0);
3140 :
3141 0 : if( sum(mask) <1e-06 ) {minValMask=0.0; maxValMask=0.0;}
3142 0 : else { minMaxMasked(minValMask, maxValMask, posmin, posmax, lattice,mask); }
3143 :
3144 0 : minMax( minVal, maxVal, posmin, posmax, lattice );
3145 0 : }
3146 :
3147 0 : Array<Double> SIImageStore::calcRobustRMS(Array<Double>& mdns, const Float pbmasklevel, const Bool fastcalc)
3148 : {
3149 0 : LogIO os( LogOrigin("SIImageStore","calcRobustRMS",WHERE) );
3150 0 : Record* regionPtr=0;
3151 0 : String LELmask("");
3152 0 : LatticeLocker lockres (*(residual()), FileLocker::Read);
3153 0 : ArrayLattice<Bool> pbmasklat(residual()->shape());
3154 0 : pbmasklat.set(False);
3155 0 : LatticeExpr<Bool> pbmask(pbmasklat);
3156 0 : if (hasPB()) {
3157 : // set bool mask: False = masked
3158 0 : pbmask = LatticeExpr<Bool> (iif(*pb() > pbmasklevel, True, False));
3159 0 : os << LogIO::DEBUG1 << "pbmask to be attached===> nfalse(pbmask.getMask())="<<nfalse(pbmask.getMask())<<endl;
3160 : }
3161 :
3162 :
3163 0 : Record thestats;
3164 0 : if (fastcalc) { // older calculation
3165 : // need to apply pbmask if present to be consistent between fastcalc = true and false.
3166 : //TempImage<Float>* tempRes = new TempImage<Float>(residual()->shape(), residual()->coordinates(), SDMaskHandler::memoryToUse());
3167 0 : auto tempRes = std::shared_ptr<TempImage<Float>>(new TempImage<Float>(residual()->shape(), residual()->coordinates(), SDMaskHandler::memoryToUse()));
3168 0 : tempRes->copyData(*residual());
3169 0 : tempRes->attachMask(pbmask);
3170 : //thestats = SDMaskHandler::calcImageStatistics(*residual(), LELmask, regionPtr, True);
3171 0 : thestats = SDMaskHandler::calcImageStatistics(*tempRes, LELmask, regionPtr, True);
3172 0 : }
3173 : else { // older way to calculate
3174 : // use the new statistic calculation algorithm
3175 0 : Vector<Bool> dummyvec;
3176 : // TT: 2018.08.01 using revised version (the older version of this is renameed to calcRobustImageStatisticsOld)
3177 0 : thestats = SDMaskHandler::calcRobustImageStatistics(*residual(), *mask(), pbmask, LELmask, regionPtr, True, dummyvec);
3178 0 : }
3179 :
3180 :
3181 : /***
3182 : ImageStatsCalculator imcalc( residual(), regionPtr, LELmask, False);
3183 :
3184 : Vector<Int> axes(2);
3185 : axes[0] = 0;
3186 : axes[1] = 1;
3187 : imcalc.setAxes(axes);
3188 : imcalc.setRobust(True);
3189 : Record thestats = imcalc.statistics();
3190 : //cout<<"thestats="<<thestats<<endl;
3191 : ***/
3192 :
3193 : //Array<Double>rmss, mads, mdns;
3194 0 : Array<Double>rmss, mads;
3195 : //thestats.get(RecordFieldId("max"), maxs);
3196 0 : thestats.get(RecordFieldId("rms"), rmss);
3197 0 : thestats.get(RecordFieldId("medabsdevmed"), mads);
3198 0 : thestats.get(RecordFieldId("median"), mdns);
3199 :
3200 : //os << LogIO::DEBUG1 << "Max : " << maxs << LogIO::POST;
3201 0 : os << LogIO::DEBUG1 << "RMS : " << rmss << LogIO::POST;
3202 0 : os << LogIO::DEBUG1 << "MAD : " << mads << LogIO::POST;
3203 :
3204 : // this for the new noise calc
3205 : //return mdns+mads*1.4826;
3206 : // this is the old noise calc
3207 0 : return mads*1.4826;
3208 0 : }
3209 :
3210 0 : void SIImageStore::printImageStats()
3211 : {
3212 0 : LogIO os( LogOrigin("SIImageStore","printImageStats",WHERE) );
3213 0 : Float minresmask=0, maxresmask=0, minres=0, maxres=0;
3214 : // findMinMax( residual()->get(), mask()->get(), minres, maxres, minresmask, maxresmask );
3215 0 : LatticeLocker lock1 (*(residual()), FileLocker::Read);
3216 0 : ArrayLattice<Bool> pixelmask(residual()->getMask());
3217 0 : if(hasMask())
3218 : {
3219 0 : LatticeLocker lock2 (*(mask()), FileLocker::Read);
3220 0 : findMinMaxLattice(*residual(), *mask() , pixelmask, maxres,maxresmask, minres, minresmask);
3221 0 : }
3222 : else
3223 : {
3224 : //LatticeExprNode pres( max( *residual() ) );
3225 0 : LatticeExprNode pres( max( iif(pixelmask,*residual(),0) ) );
3226 0 : maxres = pres.getFloat();
3227 : //LatticeExprNode pres2( min( *residual() ) );
3228 0 : LatticeExprNode pres2( min( iif(pixelmask,*residual(),0) ) );
3229 0 : minres = pres2.getFloat();
3230 0 : }
3231 :
3232 0 : os << "[" << itsImageName << "]" ;
3233 0 : os << " Peak residual (max,min) " ;
3234 0 : if( minresmask!=0.0 || maxresmask!=0.0 )
3235 0 : { os << "within mask : (" << maxresmask << "," << minresmask << ") "; }
3236 0 : os << "over full image : (" << maxres << "," << minres << ")" << LogIO::POST;
3237 :
3238 0 : os << "[" << itsImageName << "] Total Model Flux : " << getModelFlux() << LogIO::POST;
3239 :
3240 :
3241 0 : Record* regionPtr=0;
3242 0 : String LELmask("");
3243 0 : Record thestats = SDMaskHandler::calcImageStatistics(*residual(), LELmask, regionPtr, True);
3244 0 : Array<Double> maxs, mins;
3245 0 : thestats.get(RecordFieldId("max"), maxs);
3246 0 : thestats.get(RecordFieldId("min"), mins);
3247 : //os << LogIO::DEBUG1 << "Max : " << maxs << LogIO::POST;
3248 : //os << LogIO::DEBUG1 << "Min : " << mins << LogIO::POST;
3249 :
3250 0 : }
3251 :
3252 : // Calculate the total model flux
3253 43 : Float SIImageStore::getMaskSum()
3254 : {
3255 86 : LogIO os( LogOrigin("SIImageStore","getMaskSum",WHERE) );
3256 43 : LatticeLocker lock2 (*(mask()), FileLocker::Read);
3257 86 : LatticeExprNode msum( sum( *mask() ) );
3258 43 : Float masksum = msum.getFloat();
3259 :
3260 : // Float masksum = sum( mask()->get() );
3261 :
3262 43 : return masksum;
3263 43 : }
3264 :
3265 0 : Bool SIImageStore::findMinMaxLattice(const Lattice<Float>& lattice,
3266 : const Lattice<Float>& mask,
3267 : const Lattice<Bool>& pixelmask,
3268 : Float& maxAbs, Float& maxAbsMask,
3269 : Float& minAbs, Float& minAbsMask )
3270 : {
3271 :
3272 : //FOR DEGUG
3273 : //LogIO os( LogOrigin("SIImageStore","findMinMaxLattice",WHERE) );
3274 :
3275 0 : maxAbs=0.0;maxAbsMask=0.0;
3276 0 : minAbs=1e+10;minAbsMask=1e+10;
3277 0 : LatticeLocker lock1 (const_cast<Lattice<Float>& > (lattice), FileLocker::Read);
3278 0 : LatticeLocker lock2 (const_cast<Lattice<Float>& >(mask), FileLocker::Read);
3279 0 : LatticeLocker lock3 (const_cast<Lattice<Bool>& >(pixelmask), FileLocker::Read);
3280 0 : const IPosition tileShape = lattice.niceCursorShape();
3281 0 : TiledLineStepper ls(lattice.shape(), tileShape, 0);
3282 : {
3283 0 : RO_LatticeIterator<Float> li(lattice, ls);
3284 0 : RO_LatticeIterator<Float> mi(mask, ls);
3285 0 : RO_LatticeIterator<Bool> pmi(pixelmask, ls);
3286 0 : for(li.reset(),mi.reset(),pmi.reset();!li.atEnd();li++, mi++, pmi++) {
3287 0 : IPosition posMax=li.position();
3288 0 : IPosition posMin=li.position();
3289 0 : IPosition posMaxMask=li.position();
3290 0 : IPosition posMinMask=li.position();
3291 0 : Float maxVal=0.0;
3292 0 : Float minVal=0.0;
3293 0 : Float maxValMask=0.0;
3294 0 : Float minValMask=0.0;
3295 :
3296 :
3297 : // skip if lattice chunk is masked entirely.
3298 0 : if(ntrue(pmi.cursor()) > 0 ) {
3299 0 : const MaskedArray<Float> marr(li.cursor(), pmi.cursor());
3300 0 : const MaskedArray<Float> marrinmask(li.cursor() * mi.cursor(), pmi.cursor());
3301 : //minMax( minVal, maxVal, posMin, posMax, li.cursor() );
3302 0 : minMax( minVal, maxVal, posMin, posMax, marr );
3303 : //minMaxMasked(minValMask, maxValMask, posMin, posMax, li.cursor(), mi.cursor());
3304 0 : minMax(minValMask, maxValMask, posMin, posMax, marrinmask);
3305 :
3306 : //os<<"DONE minMax"<<LogIO::POST;
3307 0 : if( (maxVal) > (maxAbs) ) maxAbs = maxVal;
3308 0 : if( (maxValMask) > (maxAbsMask) ) maxAbsMask = maxValMask;
3309 :
3310 0 : if( (minVal) < (minAbs) ) minAbs = minVal;
3311 0 : if( (minValMask) < (minAbsMask) ) minAbsMask = minValMask;
3312 0 : }
3313 :
3314 0 : }
3315 0 : }
3316 :
3317 0 : return True;
3318 :
3319 :
3320 0 : }
3321 :
3322 : //////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
3323 : //////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
3324 : //////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
3325 : //////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
3326 : //////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
3327 :
3328 : //
3329 : //-------------------------------------------------------------
3330 : // Initialize the internals of the object. Perhaps other such
3331 : // initializations in the constructors can be moved here too.
3332 : //
3333 109 : void SIImageStore::init()
3334 : {
3335 109 : imageExts.resize(MAX_IMAGE_IDS);
3336 :
3337 109 : imageExts(MASK) = ".mask";
3338 109 : imageExts(PSF) = ".psf";
3339 109 : imageExts(MODEL) = ".model";
3340 109 : if (not itsIsSingleDishStore) {
3341 88 : imageExts(RESIDUAL) = ".residual";
3342 88 : imageExts(IMAGE) = ".image";
3343 : }
3344 : else {
3345 : // The initial residual image IS the single-dish image
3346 21 : imageExts(RESIDUAL) = ".image";
3347 : // Make sure we have no duplicates in the vector
3348 : // Not sure what should be done here
3349 21 : imageExts(IMAGE) = ".wrongly-deconvolved-single-dish-image";
3350 : }
3351 109 : imageExts(WEIGHT) = ".weight";
3352 109 : imageExts(SUMWT) = ".sumwt";
3353 109 : imageExts(GRIDWT) = ".gridwt";
3354 109 : imageExts(PB) = ".pb";
3355 109 : imageExts(FORWARDGRID) = ".forward";
3356 109 : imageExts(BACKWARDGRID) = ".backward";
3357 109 : imageExts(IMAGEPBCOR) = ".image.pbcor";
3358 :
3359 109 : itsParentPsf = itsPsf;
3360 109 : itsParentModel = itsModel;
3361 109 : itsParentResidual = itsResidual;
3362 109 : itsParentWeight = itsWeight;
3363 109 : itsParentImage = itsImage;
3364 109 : itsParentSumWt = itsSumWt;
3365 109 : itsParentMask = itsMask;
3366 109 : itsParentImagePBcor = itsImagePBcor;
3367 :
3368 : // cout << "parent shape : " << itsParentImageShape
3369 : // << " shape : " << itsImageShape << endl;
3370 109 : itsParentImageShape = itsImageShape;
3371 109 : itsParentCoordSys = itsCoordSys;
3372 :
3373 109 : if ( itsNFacets>1 or itsNChanChunks>1 or itsNPolChunks>1 ) {
3374 0 : itsImageShape = IPosition(4,0,0,0,0);
3375 : }
3376 :
3377 109 : itsOpened = 0;
3378 :
3379 109 : itsPSFSideLobeLevel = 0.0;
3380 109 : itsReadLock = nullptr;
3381 109 : itsDataPolRep = StokesImageUtil::UNKNOWN; // Should throw an exception if
3382 : // it is not initialized properly
3383 109 : }
3384 :
3385 :
3386 0 : void SIImageStore::regridToModelImage( ImageInterface<Float> &inputimage, Int term )
3387 : {
3388 : try
3389 : {
3390 :
3391 : //output coords
3392 0 : IPosition outshape = itsImageShape;
3393 0 : CoordinateSystem outcsys = itsCoordSys;
3394 0 : DirectionCoordinate outDirCsys = outcsys.directionCoordinate();
3395 0 : SpectralCoordinate outSpecCsys = outcsys.spectralCoordinate();
3396 :
3397 : // do regrid
3398 0 : IPosition axes(3,0, 1, 2);
3399 0 : IPosition inshape = inputimage.shape();
3400 0 : CoordinateSystem incsys = inputimage.coordinates();
3401 0 : DirectionCoordinate inDirCsys = incsys.directionCoordinate();
3402 0 : SpectralCoordinate inSpecCsys = incsys.spectralCoordinate();
3403 :
3404 0 : Vector<Int> dirAxes = CoordinateUtil::findDirectionAxes(incsys);
3405 0 : axes(0) = dirAxes(0);
3406 0 : axes(1) = dirAxes(1);
3407 0 : axes(2) = CoordinateUtil::findSpectralAxis(incsys);
3408 :
3409 : try {
3410 0 : ImageRegrid<Float> imregrid;
3411 0 : imregrid.regrid( *(model(term)), Interpolate2D::LINEAR, axes, inputimage );
3412 0 : } catch (AipsError &x) {
3413 0 : throw(AipsError("ImageRegrid error : "+ x.getMesg()));
3414 0 : }
3415 :
3416 0 : }catch(AipsError &x)
3417 : {
3418 0 : throw(AipsError("Error in regridding input model image to target coordsys : " + x.getMesg()));
3419 0 : }
3420 0 : }
3421 :
3422 : //
3423 : //---------------------------------------------------------------
3424 : //
3425 0 : void SIImageStore::makePersistent(String& fileName)
3426 : {
3427 0 : LogIO logIO(LogOrigin("SIImageStore", "makePersistent"));
3428 0 : ofstream outFile; outFile.open(fileName.c_str(),std::ofstream::out);
3429 0 : if (!outFile) logIO << "Failed to open filed \"" << fileName << "\"" << LogIO::EXCEPTION;
3430 : // String itsImageName;
3431 0 : outFile << "itsImageNameBase: " << itsImageName << endl;
3432 :
3433 : //IPosition itsImageShape;
3434 0 : outFile << "itsImageShape: " << itsImageShape.nelements() << " ";
3435 0 : for (uInt i=0;i<itsImageShape.nelements(); i++) outFile << itsImageShape(i) << " "; outFile << endl;
3436 :
3437 : // Don't know what to do with this. Looks like this gets
3438 : // filled-in from one of the images. So load this from one of the
3439 : // images if they exist?
3440 : //CoordinateSystem itsCoordSys;
3441 :
3442 : // Int itsNFacets;
3443 0 : outFile << "itsNFacets: " << itsNFacets << endl;
3444 0 : outFile << "itsUseWeight: " << itsUseWeight << endl;
3445 :
3446 :
3447 : // Misc Information to go into the header.
3448 : // Record itsMiscInfo;
3449 0 : itsMiscInfo.print(outFile);
3450 :
3451 : // std::shared_ptr<ImageInterface<Float> > itsMask, itsPsf, itsModel, itsResidual, itsWeight, itsImage, itsSumWt;
3452 : // std::shared_ptr<ImageInterface<Complex> > itsForwardGrid, itsBackwardGrid;
3453 :
3454 0 : Vector<Bool> ImageExists(MAX_IMAGE_IDS);
3455 0 : if ( ! itsMask ) ImageExists(MASK)=False;
3456 0 : if ( ! itsPsf ) ImageExists(PSF)=False;
3457 0 : if ( ! itsModel ) ImageExists(MODEL)=False;
3458 0 : if ( ! itsResidual ) ImageExists(RESIDUAL)=False;
3459 0 : if ( ! itsWeight ) ImageExists(WEIGHT)=False;
3460 0 : if ( ! itsImage ) ImageExists(IMAGE)=False;
3461 0 : if ( ! itsSumWt ) ImageExists(SUMWT)=False;
3462 0 : if ( ! itsGridWt ) ImageExists(GRIDWT)=False;
3463 0 : if ( ! itsPB ) ImageExists(PB)=False;
3464 :
3465 0 : if ( ! itsForwardGrid ) ImageExists(FORWARDGRID)=False;
3466 0 : if ( ! itsBackwardGrid ) ImageExists(BACKWARDGRID)=False;
3467 :
3468 0 : outFile << "ImagesExist: " << ImageExists << endl;
3469 0 : }
3470 : //
3471 : //---------------------------------------------------------------
3472 : //
3473 0 : void SIImageStore::recreate(String& fileName)
3474 : {
3475 0 : LogIO logIO(LogOrigin("SIImageStore", "recreate"));
3476 0 : ifstream inFile; inFile.open(fileName.c_str(),std::ofstream::out);
3477 0 : if (!inFile) logIO << "Failed to open filed \"" << fileName << "\"" << LogIO::EXCEPTION;
3478 :
3479 0 : String token;
3480 0 : inFile >> token; if (token == "itsImageNameBase:") inFile >> itsImageName;
3481 :
3482 0 : inFile >> token;
3483 0 : if (token=="itsImageShape:")
3484 : {
3485 : Int n;
3486 0 : inFile >> n;
3487 0 : itsImageShape.resize(n);
3488 0 : for (Int i=0;i<n; i++) inFile >> itsImageShape(i);
3489 : }
3490 :
3491 : // Int itsNFacets;
3492 0 : inFile >> token; if (token=="itsNFacets:") inFile >> itsNFacets;
3493 0 : inFile >> token; if (token=="itsUseWeight:") inFile >> itsUseWeight;
3494 :
3495 0 : Bool coordSysLoaded=False;
3496 0 : String itsName;
3497 : try
3498 : {
3499 0 : itsName=itsImageName+imageExts(MASK);casa::openImage(itsName, itsMask);
3500 0 : if (coordSysLoaded==False) {itsCoordSys=itsMask->coordinates(); itsMiscInfo=itsImage->miscInfo();coordSysLoaded=True;}
3501 0 : } catch (AipsIO& x) {logIO << "\"" << itsName << "\" not found." << LogIO::WARN;};
3502 : try
3503 : {
3504 0 : itsName=itsImageName+imageExts(MODEL);casa::openImage(itsName, itsModel);
3505 0 : if (coordSysLoaded==False) {itsCoordSys=itsModel->coordinates(); itsMiscInfo=itsModel->miscInfo();coordSysLoaded=True;}
3506 0 : } catch (AipsIO& x) {logIO << "\"" << itsName << "\" not found." << LogIO::WARN;};
3507 : try
3508 : {
3509 0 : itsName=itsImageName+imageExts(RESIDUAL);casa::openImage(itsName, itsResidual);
3510 0 : if (coordSysLoaded==False) {itsCoordSys=itsResidual->coordinates(); itsMiscInfo=itsResidual->miscInfo();coordSysLoaded=True;}
3511 0 : } catch (AipsIO& x) {logIO << "\"" << itsName << "\" not found." << LogIO::WARN;};
3512 : try
3513 : {
3514 0 : itsName=itsImageName+imageExts(WEIGHT);casa::openImage(itsName, itsWeight);
3515 0 : if (coordSysLoaded==False) {itsCoordSys=itsWeight->coordinates(); itsMiscInfo=itsWeight->miscInfo();coordSysLoaded=True;}
3516 0 : } catch (AipsIO& x) {logIO << "\"" << itsName << "\" not found." << LogIO::WARN;};
3517 : try
3518 : {
3519 0 : itsName=itsImageName+imageExts(IMAGE);casa::openImage(itsName, itsImage);
3520 0 : if (coordSysLoaded==False) {itsCoordSys=itsImage->coordinates(); itsMiscInfo=itsImage->miscInfo();coordSysLoaded=True;}
3521 0 : } catch (AipsIO& x) {logIO << "\"" << itsName << "\" not found." << LogIO::WARN;};
3522 : try
3523 : {
3524 0 : itsName=itsImageName+imageExts(SUMWT);casa::openImage(itsName, itsSumWt);
3525 0 : if (coordSysLoaded==False) {itsCoordSys=itsSumWt->coordinates(); itsMiscInfo=itsSumWt->miscInfo();coordSysLoaded=True;}
3526 0 : } catch (AipsIO& x) {logIO << "\"" << itsName << "\" not found." << LogIO::WARN;};
3527 : try
3528 : {
3529 0 : itsName=itsImageName+imageExts(PSF);casa::openImage(itsName, itsPsf);
3530 0 : if (coordSysLoaded==False) {itsCoordSys=itsPsf->coordinates(); itsMiscInfo=itsPsf->miscInfo();coordSysLoaded=True;}
3531 0 : } catch (AipsIO& x) {logIO << "\"" << itsName << "\" not found." << LogIO::WARN;};
3532 : try
3533 : {
3534 0 : casa::openImage(itsImageName+imageExts(FORWARDGRID), itsForwardGrid);
3535 0 : casa::openImage(itsImageName+imageExts(BACKWARDGRID), itsBackwardGrid);
3536 : }
3537 0 : catch (AipsError& x)
3538 : {
3539 0 : logIO << "Did not find forward and/or backward grid. Just say'n..." << LogIO::POST;
3540 0 : }
3541 :
3542 0 : }
3543 : //////////////
3544 0 : Bool SIImageStore::intersectComplexImage(const String& ComplexImageName){
3545 0 : Vector<Int> whichStokes(0);
3546 0 : CoordinateSystem cimageCoord = StokesImageUtil::CStokesCoord( itsCoordSys,
3547 0 : whichStokes, itsDataPolRep);
3548 :
3549 :
3550 : //cerr <<"itsDataPolRep " << itsDataPolRep << endl;
3551 :
3552 0 : CountedPtr<PagedImage<Complex> > compliantImage =nullptr;
3553 : {
3554 0 : PagedImage<Complex>inputImage(ComplexImageName);
3555 0 : IPosition theShape=itsImageShape;
3556 0 : theShape(0)=inputImage.shape()(0);
3557 0 : theShape(1)=inputImage.shape()(1);
3558 0 : CoordinateSystem inpcsys=inputImage.coordinates();
3559 0 : Vector<Double> refpix=cimageCoord.referencePixel();
3560 0 : refpix(0)+=(theShape(0)-itsImageShape(0))/2.0;
3561 0 : refpix(1)+=(theShape(1)-itsImageShape(1))/2.0;
3562 0 : cimageCoord.setReferencePixel(refpix);
3563 0 : String tmpImage=File::newUniqueName(".", "TempImage").absoluteName();
3564 0 : compliantImage=new PagedImage<Complex>(theShape, cimageCoord, tmpImage);
3565 0 : compliantImage->set(0.0);
3566 0 : IPosition iblc(theShape.nelements(),0);
3567 0 : IPosition itrc=theShape-1;
3568 : //cerr << "blc " << iblc << " trc " << itrc << " shape " << theShape << endl;
3569 0 : LCBox lbox(iblc, itrc, theShape);
3570 0 : ImageRegion imagreg(WCBox(lbox, cimageCoord));
3571 :
3572 :
3573 0 : SubImage<Complex> subim(inputImage, imagreg, false);
3574 : //cerr << "shapes " << inputImage.shape() << " sub " << subim.shape() << " compl " << compliantImage->shape() << endl;
3575 0 : compliantImage->copyData(subim);
3576 :
3577 0 : }
3578 0 : TableUtil::deleteTable(ComplexImageName);
3579 0 : compliantImage->rename(ComplexImageName);
3580 0 : return True;
3581 :
3582 0 : }
3583 :
3584 :
3585 : //////////////////////////////////////////////////////////////////////////////////////////////////////
3586 : //////////////////////////////////////////////////////////////////////////////////////////////////////
3587 :
3588 : } //# NAMESPACE CASA - END
3589 :
|
