Line data Source code
1 : //# SIImageStore.cc: Implementation of Imager.h
2 : //# Copyright (C) 1997-2008
3 : //# Associated Universities, Inc. Washington DC, USA.
4 : //#
5 : //# This program is free software; you can redistribute it and/or modify it
6 : //# under the terms of the GNU General Public License as published by the Free
7 : //# Software Foundation; either version 2 of the License, or (at your option)
8 : //# any later version.
9 : //#
10 : //# This program is distributed in the hope that it will be useful, but WITHOUT
11 : //# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
12 : //# FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for
13 : //# more details.
14 : //#
15 : //# You should have received a copy of the GNU General Public License along
16 : //# with this program; if not, write to the Free Software Foundation, Inc.,
17 : //# 675 Massachusetts Ave, Cambridge, MA 02139, USA.
18 : //#
19 : //# Correspondence concerning AIPS++ should be addressed as follows:
20 : //# Internet email: casa-feedback@nrao.edu.
21 : //# Postal address: AIPS++ Project Office
22 : //# National Radio Astronomy Observatory
23 : //# 520 Edgemont Road
24 : //# Charlottesville, VA 22903-2475 USA
25 : //#
26 : //# $Id$
27 :
28 : #include <casacore/casa/Exceptions/Error.h>
29 : #include <iostream>
30 : #include <sstream>
31 :
32 : #include <casacore/casa/Arrays/Matrix.h>
33 : #include <casacore/casa/Arrays/ArrayMath.h>
34 : #include <casacore/casa/Arrays/ArrayLogical.h>
35 :
36 : #include <casacore/casa/Logging.h>
37 : #include <casacore/casa/Logging/LogIO.h>
38 : #include <casacore/casa/Logging/LogMessage.h>
39 : #include <casacore/casa/Logging/LogSink.h>
40 : #include <casacore/casa/Logging/LogMessage.h>
41 : #include <casacore/casa/OS/DirectoryIterator.h>
42 : #include <casacore/casa/OS/File.h>
43 : #include <casacore/casa/OS/Path.h>
44 : #include <casacore/lattices/Lattices/LatticeLocker.h>
45 : #include <casacore/casa/OS/HostInfo.h>
46 : #include <components/ComponentModels/GaussianDeconvolver.h>
47 : #include <casacore/images/Images/TempImage.h>
48 : #include <casacore/images/Images/PagedImage.h>
49 : #include <imageanalysis/ImageAnalysis/CasaImageBeamSet.h>
50 : #include <casacore/lattices/LatticeMath/LatticeMathUtil.h>
51 : #include <casacore/ms/MeasurementSets/MSHistoryHandler.h>
52 : #include <casacore/ms/MeasurementSets/MeasurementSet.h>
53 : #include <casacore/tables/Tables/TableUtil.h>
54 :
55 : #include <synthesis/ImagerObjects/SIImageStore.h>
56 : #include <synthesis/ImagerObjects/SDMaskHandler.h>
57 : #include <synthesis/TransformMachines/StokesImageUtil.h>
58 : #include <synthesis/TransformMachines2/Utils.h>
59 : #include <synthesis/ImagerObjects/SynthesisUtilMethods.h>
60 : #include <casacore/images/Images/ImageRegrid.h>
61 : #include <imageanalysis/ImageAnalysis/ImageStatsCalculator.h>
62 :
63 : //#include <imageanalysis/ImageAnalysis/ImageMaskedPixelReplacer.h>
64 :
65 : #include <sys/types.h>
66 : #include <unistd.h>
67 : #include "SIImageStore.h"
68 : using namespace std;
69 :
70 : using namespace casacore;
71 :
72 : namespace casa { //# NAMESPACE CASA - BEGIN
73 :
74 : //
75 : //===========================================================================
76 : // Global method that I (SB) could make work in SynthesisUtilsMethods.
77 : //
78 : template <class T>
79 0 : void openImage(const String& imagenamefull,std::shared_ptr<ImageInterface<T> >& imPtr )
80 : {
81 0 : LogIO logIO ( LogOrigin("SynthesisImager","openImage(name)") );
82 : try
83 : {
84 0 : if (Table::isReadable(imagenamefull))
85 0 : imPtr.reset( new PagedImage<T>( imagenamefull ) );
86 : }
87 0 : catch (AipsError &x)
88 : {
89 0 : logIO << "Error in reading image \"" << imagenamefull << "\"" << LogIO::EXCEPTION;
90 : }
91 0 : }
92 : //
93 : //--------------------------------------------------------------
94 : //
95 : template
96 : void openImage(const String& imagenamefull, std::shared_ptr<ImageInterface<Float> >& img );
97 : template
98 : void openImage(const String& imagenamefull, std::shared_ptr<ImageInterface<Complex> >& img );
99 : //
100 : //===========================================================================
101 :
102 :
103 : //////////////////////////////////////////////////////////////////////////////////////////////////////
104 : //////////////////////////////////////////////////////////////////////////////////////////////////////
105 : ///// START of SIIMAGESTORE implementation
106 : //////////////////////////////////////////////////////////////////////////////////////////////////////
107 :
108 : //////////////////////////////////////////////////////////////////////////////////////////////////////
109 :
110 0 : SIImageStore::SIImageStore()
111 : {
112 :
113 0 : itsPsf.reset( );
114 0 : itsModel.reset( );
115 0 : itsResidual.reset( );
116 0 : itsWeight.reset( );
117 0 : itsImage.reset( );
118 0 : itsMask.reset( );
119 0 : itsGridWt.reset( );
120 0 : itsPB.reset( );
121 0 : itsImagePBcor.reset();
122 0 : itsTempWorkIm.reset();
123 :
124 0 : itsSumWt.reset( );
125 0 : itsOverWrite = False;
126 0 : itsUseWeight = False;
127 0 : itsPBScaleFactor = 1.0;
128 :
129 0 : itsNFacets = 1;
130 0 : itsFacetId = 0;
131 0 : itsNChanChunks = 1;
132 0 : itsChanId = 0;
133 0 : itsNPolChunks = 1;
134 0 : itsPolId = 0;
135 :
136 0 : itsImageShape = IPosition(4,0,0,0,0);
137 0 : itsImageName = String("");
138 0 : itsCoordSys = CoordinateSystem();
139 0 : itsMiscInfo = Record();
140 :
141 0 : itsIsSingleDishStore = False;
142 :
143 0 : init();
144 : // validate();
145 :
146 0 : }
147 :
148 : // Used from SynthesisNormalizer::makeImageStore()
149 0 : SIImageStore::SIImageStore(
150 : const String &imagename,
151 : const CoordinateSystem &imcoordsys,
152 : const IPosition &imshape,
153 : const String &objectname,
154 : const Record &miscinfo,
155 : // const Int nfacets,
156 : const Bool /*overwrite*/,
157 : const Bool useweightimage,
158 : const Bool issingledishstore
159 0 : )
160 : // TODO : Add parameter to indicate weight image shape.
161 : {
162 0 : LogIO os( LogOrigin("SIImageStore","Open new Images",WHERE) );
163 :
164 :
165 0 : itsPsf.reset( );
166 0 : itsModel.reset( );
167 0 : itsResidual.reset( );
168 0 : itsWeight.reset( );
169 0 : itsImage.reset( );
170 0 : itsMask.reset( );
171 0 : itsGridWt.reset( );
172 0 : itsPB.reset( );
173 0 : itsImagePBcor.reset( );
174 0 : itsTempWorkIm.reset();
175 :
176 0 : itsSumWt.reset( );
177 0 : itsOverWrite = False; // Hard Coding this. See CAS-6937. overwrite;
178 0 : itsUseWeight = useweightimage;
179 0 : itsPBScaleFactor = 1.0;
180 :
181 0 : itsNFacets = 1;
182 0 : itsFacetId = 0;
183 0 : itsNChanChunks = 1;
184 0 : itsChanId = 0;
185 0 : itsNPolChunks = 1;
186 0 : itsPolId = 0;
187 :
188 0 : itsImageName = imagename;
189 0 : itsCoordSys = imcoordsys;
190 0 : itsImageShape = imshape;
191 0 : itsObjectName = objectname;
192 0 : itsMiscInfo = miscinfo;
193 :
194 0 : itsIsSingleDishStore = issingledishstore;
195 :
196 0 : init();
197 :
198 0 : validate();
199 0 : }
200 :
201 : // Used from SynthesisNormalizer::makeImageStore()
202 : // This constructor creates an Image Store from images on disk
203 0 : SIImageStore::SIImageStore(
204 : const String &imagename,
205 : const Bool ignorefacets,
206 : const Bool noRequireSumwt,
207 0 : const Bool makeSingleDishStore)
208 : {
209 0 : LogIO os( LogOrigin("SIImageStore","Open existing Images",WHERE) );
210 :
211 : { // Initialize some members
212 0 : itsImageName = imagename;
213 :
214 0 : itsPsf.reset( );
215 0 : itsModel.reset( );
216 0 : itsResidual.reset( );
217 0 : itsWeight.reset( );
218 0 : itsImage.reset( );
219 0 : itsMask.reset( );
220 0 : itsGridWt.reset( );
221 0 : itsPB.reset( );
222 0 : itsImagePBcor.reset( );
223 0 : itsTempWorkIm.reset();
224 0 : itsMiscInfo = Record();
225 :
226 0 : itsSumWt.reset( );
227 0 : itsNFacets = 1;
228 0 : itsFacetId = 0;
229 0 : itsNChanChunks = 1;
230 0 : itsChanId = 0;
231 0 : itsNPolChunks = 1;
232 0 : itsPolId = 0;
233 :
234 0 : itsOverWrite = False;
235 :
236 0 : itsIsSingleDishStore = makeSingleDishStore;
237 : }
238 :
239 : // Need to do this init now so that imageExts is initialized
240 0 : init();
241 :
242 : // Since this constructor creates an ImStore from images on disk,
243 : // it needs at least one of the images to actually be present on disk,
244 : // from which it can retrieve shape and coordsys information.
245 :
246 : { // Do we have at least 1 usable image ?
247 0 : constexpr SIImageStore::IMAGE_IDS imageIds[] = {
248 : SIImageStore::PSF,
249 : SIImageStore::RESIDUAL,
250 : SIImageStore::MODEL,
251 : SIImageStore::PB,
252 : SIImageStore::WEIGHT,
253 : SIImageStore::GRIDWT,
254 : };
255 :
256 0 : std::shared_ptr<ImageInterface<Float> > imptr;
257 :
258 0 : auto haveImage = False;
259 0 : for (auto imageId : imageIds) {
260 0 : const auto imageName = imageFullName(imageId);
261 0 : if (doesImageExist(imageName)) {
262 0 : if (imageId == SIImageStore::GRIDWT) {
263 0 : constexpr auto preserveOldComment = True;
264 : // How can this be right ?
265 : }
266 0 : buildImage(imptr, imageName);
267 0 : haveImage = True;
268 0 : break;
269 : }
270 0 : }
271 :
272 0 : if (haveImage) {
273 0 : itsObjectName = imptr->imageInfo().objectName();
274 0 : itsImageShape = imptr->shape();
275 0 : itsCoordSys = imptr->coordinates();
276 0 : itsMiscInfo = imptr->miscInfo();
277 : } else {
278 0 : String errMsg;
279 0 : if (not itsIsSingleDishStore) {
280 : errMsg = "PSF, Residual, Model Image (or sumwt) do not exist."
281 0 : " Please create one of them.";
282 : } else {
283 0 : errMsg = String("Single-dish image and single-dish weight image"
284 : " do not exist. Please create one of:\n")
285 0 : + imageFullName(SIImageStore::RESIDUAL) + "\nor\n"
286 0 : + imageFullName(SIImageStore::WEIGHT);
287 : }
288 0 : throw AipsError(errMsg);
289 0 : }
290 0 : }
291 :
292 : { // Handle special case: psf or residual exist
293 : // Should we update things here when itsIsSingleDishStore = True ?
294 0 : if ( doesImageExist( imageFullName(RESIDUAL) )
295 0 : or doesImageExist( imageFullName(PSF) ) ) {
296 0 : if ( doesImageExist( imageFullName(SUMWT)) ) {
297 0 : std::shared_ptr<ImageInterface<Float> > imptr;
298 0 : buildImage(imptr, imageFullName(SUMWT) );
299 0 : itsNFacets = imptr->shape()[0];
300 0 : itsFacetId = 0;
301 0 : itsUseWeight = getUseWeightImage( *imptr );
302 0 : itsPBScaleFactor = 1.0; // No need to set properly here
303 : // as it will be calc'd in ()
304 : // Redo this here as psf may have different coordinates
305 0 : itsCoordSys = imptr->coordinates();
306 0 : itsMiscInfo =imptr->miscInfo();
307 0 : if ( itsUseWeight
308 0 : and not doesImageExist( imageFullName(WEIGHT) ) ) {
309 0 : throw AipsError(
310 : "Internal error : Sumwt has a useweightimage=True"
311 : " but the weight image does not exist."
312 0 : );
313 : }
314 0 : } else {
315 0 : if (not noRequireSumwt) { // .sumwt image required?
316 : // -> probably not for just the minor cycle (aka task deconvolve)
317 0 : throw AipsError(
318 : "SumWt information does not exist."
319 : " Please create either a PSF or Residual"
320 0 : );
321 : } else {
322 : os << "SumWt does not exist. Proceeding only with PSF"
323 0 : << LogIO::POST;
324 0 : std::shared_ptr<ImageInterface<Float> > imptr;
325 0 : if ( doesImageExist( imageFullName(RESIDUAL) ) ) {
326 0 : buildImage(imptr, imageFullName(RESIDUAL) );
327 : }
328 : else {
329 0 : buildImage(imptr, imageFullName(PSF) );
330 : }
331 :
332 0 : itsNFacets = 1;
333 0 : itsFacetId = 0;
334 0 : itsUseWeight = False;
335 0 : itsPBScaleFactor = 1.0;
336 0 : itsCoordSys = imptr->coordinates();
337 0 : itsMiscInfo = imptr->miscInfo();
338 0 : }
339 : }
340 : } // if psf or residual exist
341 : } // Handle special case
342 :
343 0 : if (ignorefacets == True) itsNFacets = 1;
344 :
345 : // Why again ?
346 0 : init();
347 :
348 0 : validate();
349 0 : }
350 :
351 : // used from getSubImageStore(), for example when creating the facets list
352 : // this would be safer if it was refactored as a copy constructor of the generic stuff +
353 : // initialization of the facet related parameters
354 0 : SIImageStore::SIImageStore(const std::shared_ptr<ImageInterface<Float> > &modelim,
355 : const std::shared_ptr<ImageInterface<Float> > &residim,
356 : const std::shared_ptr<ImageInterface<Float> > &psfim,
357 : const std::shared_ptr<ImageInterface<Float> > &weightim,
358 : const std::shared_ptr<ImageInterface<Float> > &restoredim,
359 : const std::shared_ptr<ImageInterface<Float> > &maskim,
360 : const std::shared_ptr<ImageInterface<Float> > &sumwtim,
361 : const std::shared_ptr<ImageInterface<Float> > &gridwtim,
362 : const std::shared_ptr<ImageInterface<Float> > &pbim,
363 : const std::shared_ptr<ImageInterface<Float> > &restoredpbcorim,
364 : const std::shared_ptr<ImageInterface<Float> > & tempworkimage,
365 : const CoordinateSystem &csys,
366 : const IPosition &imshape,
367 : const String &imagename,
368 : const String &objectname,
369 : const Record &miscinfo,
370 : const Int facet, const Int nfacets,
371 : const Int chan, const Int nchanchunks,
372 : const Int pol, const Int npolchunks,
373 0 : const Bool useweightimage)
374 : {
375 :
376 :
377 0 : itsPsf=psfim;
378 0 : itsModel=modelim;
379 0 : itsResidual=residim;
380 : /* if(residim){
381 : LatticeLocker lock1(*itsResidual, FileLocker::Read);
382 : cerr << "RESIDMAX " << max(itsResidual->get()) << " " << max(residim->get()) << endl;
383 : }*/
384 0 : itsWeight=weightim;
385 0 : itsImage=restoredim;
386 0 : itsMask=maskim;
387 :
388 0 : itsSumWt=sumwtim;
389 :
390 0 : itsGridWt=gridwtim;
391 0 : itsPB=pbim;
392 0 : itsImagePBcor=restoredpbcorim;
393 0 : itsTempWorkIm=tempworkimage;
394 :
395 0 : itsPBScaleFactor=1.0;// No need to set properly here as it will be computed in makePSF.
396 :
397 0 : itsObjectName = objectname;
398 0 : itsMiscInfo = miscinfo;
399 :
400 0 : itsNFacets = nfacets;
401 0 : itsFacetId = facet;
402 0 : itsNChanChunks = nchanchunks;
403 0 : itsChanId = chan;
404 0 : itsNPolChunks = npolchunks;
405 0 : itsPolId = pol;
406 :
407 0 : itsOverWrite=False;
408 0 : itsUseWeight=useweightimage;
409 :
410 0 : itsParentImageShape = imshape;
411 0 : itsImageShape = imshape;
412 :
413 0 : itsParentCoordSys = csys;
414 0 : itsCoordSys = csys; // Hopefully this doesn't change for a reference image
415 0 : itsImageName = imagename;
416 :
417 0 : itsIsSingleDishStore = False;
418 :
419 : //-----------------------
420 0 : init(); // Connect parent pointers to the images.
421 : //-----------------------
422 :
423 : // Set these to null, to be set later upon first access.
424 0 : itsPsf.reset( );
425 0 : itsModel.reset( );
426 0 : itsResidual.reset( );
427 0 : itsWeight.reset( );
428 0 : itsImage.reset( );
429 0 : itsMask.reset( );
430 0 : itsSumWt.reset( );
431 0 : itsPB.reset( );
432 :
433 0 : validate();
434 0 : }
435 :
436 0 : void SIImageStore::validate()
437 : {
438 : // There are two valid states. Check for at least one of them.
439 0 : Bool inValidState = False;
440 :
441 0 : stringstream oss;
442 : { // Initialize error message
443 : oss
444 0 : << "shape:" << itsImageShape
445 0 : << " parentimageshape:" << itsParentImageShape
446 0 : << " nfacets:" << itsNFacets << "x" << itsNFacets
447 0 : << " facetid:" << itsFacetId
448 0 : << " nchanchunks:" << itsNChanChunks << " chanid:" << itsChanId
449 0 : << " npolchunks:" << itsNPolChunks << " polid:" << itsPolId
450 0 : << " coord-dim:" << itsCoordSys.nPixelAxes()
451 0 : << " psf/res:" << (hasPsf() or hasResidual());
452 0 : if ( hasSumWt() ) oss << " sumwtshape : " << sumwt()->shape();
453 0 : oss << endl;
454 : }
455 :
456 : try {
457 :
458 0 : if ( itsCoordSys.nPixelAxes() != 4 ) inValidState = False;
459 :
460 : // (1) Regular imagestore
461 0 : if (
462 0 : itsNFacets == 1 and itsFacetId == 0
463 0 : and itsNChanChunks == 1 and itsChanId == 0
464 0 : and itsNPolChunks == 1 and itsPolId == 0 ) {
465 0 : Bool sumWtShapeOK = hasSumWt() and sumwt()->shape()[0] == 1;
466 0 : if ( itsImageShape.isEqual(itsParentImageShape)
467 0 : and ( sumWtShapeOK or not hasSumWt() )
468 0 : and itsParentImageShape.product() > 0 ) inValidState = True;
469 0 : }
470 : // (2) Reference Sub Imagestore
471 0 : else if (
472 0 : ( itsNFacets > 1 and itsFacetId >= 0 )
473 0 : or ( itsNChanChunks > 1 and itsChanId >= 0 )
474 0 : or ( itsNPolChunks > 1 and itsPolId >= 0 ) ) {
475 : // If shape is still unset, even when the first image has been made....
476 : Bool imgShapeOK1 =
477 0 : ( itsImageShape.product() > 0 and ( hasPsf() or hasResidual() ) );
478 : Bool imgShapeOK2 =
479 0 : ( itsImageShape.isEqual(IPosition(4,0,0,0,0)) and
480 0 : ( not hasPsf() and not hasResidual() )
481 0 : );
482 0 : Bool imgShapeOK = imgShapeOK1 or imgShapeOK2;
483 : Bool sumWtShapeOK =
484 0 : hasSumWt() and sumwt()->shape()[0] == 1; // One facet only.
485 :
486 0 : if ( imgShapeOK and ( itsParentImageShape.product() > 0 )
487 0 : and ( itsFacetId < itsNFacets*itsNFacets )
488 : // and (itsChanId<=itsNChanChunks) // chanchunks can be larger...
489 0 : and ( itsPolId < itsNPolChunks )
490 0 : and ( sumWtShapeOK or not hasSumWt() ) ) inValidState = True;
491 : }
492 :
493 : }
494 0 : catch ( AipsError &err ) {
495 0 : inValidState = False;
496 0 : oss << " ||||| " << err.getMesg() << endl;
497 0 : }
498 :
499 0 : if ( not inValidState ) {
500 0 : throw AipsError(
501 0 : "Internal Error : Invalid ImageStore state : " + oss.str()
502 0 : );
503 : }
504 :
505 0 : }
506 :
507 :
508 : //////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
509 :
510 0 : std::shared_ptr<SIImageStore> SIImageStore::getSubImageStore(const Int facet, const Int nfacets,
511 : const Int chan, const Int nchanchunks,
512 : const Int pol, const Int npolchunks)
513 : {
514 :
515 0 : return std::make_shared<SIImageStore>(itsModel, itsResidual, itsPsf, itsWeight, itsImage, itsMask, itsSumWt, itsGridWt, itsPB, itsImagePBcor, itsTempWorkIm, itsCoordSys, itsImageShape, itsImageName, itsObjectName, itsMiscInfo, facet, nfacets, chan, nchanchunks, pol, npolchunks, itsUseWeight);
516 : }
517 :
518 : /////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
519 : //// Either read an image from disk, or construct one.
520 :
521 0 : std::shared_ptr<ImageInterface<Float> > SIImageStore::openImage(const String imagenamefull,
522 : const Bool overwrite,
523 : const Bool dosumwt, const Int nfacetsperside, const Bool checkCoordSys)
524 : {
525 :
526 :
527 0 : std::shared_ptr<ImageInterface<Float> > imPtr;
528 0 : IPosition useShape( itsParentImageShape );
529 :
530 0 : if( dosumwt ) // change shape to sumwt image shape.
531 : {
532 0 : useShape[0] = nfacetsperside;
533 0 : useShape[1] = nfacetsperside;
534 : // cout << "openImage : Making sumwt grid : using shape : " << useShape << endl;
535 : }
536 :
537 : // overwrite=False; /// HARD CODING THIS. See CAS-6937.
538 :
539 : // cout << "Open image : " << imagenamefull << " useShape : " << useShape << endl;
540 :
541 : // if image exists
542 : // if overwrite=T
543 : // try to make new image
544 : // if not, try to open existing image
545 : // if cannot, complain.
546 : // if overwrite=F
547 : // try to open existing image
548 : // if cannot, complain
549 : // if image does not exist
550 : // try to make new image
551 : // if cannot, complain
552 0 : Bool dbg=False;
553 0 : if( doesImageExist( imagenamefull ) )
554 : {
555 : ///// not used since itsOverWrite is hardcoded to FALSE (CAS-6937)
556 0 : if (overwrite) //overwrite and make new image
557 : {
558 0 : if(dbg) cout << "Trying to overwrite and open new image named : " << imagenamefull << " ow:"<< overwrite << endl;
559 : try{
560 0 : buildImage(imPtr, useShape, itsParentCoordSys, imagenamefull) ;
561 0 : LatticeLocker lock1(*imPtr, FileLocker::Write);
562 : // initialize to zeros...
563 0 : imPtr->set(0.0);
564 0 : }
565 0 : catch (AipsError &x){
566 0 : if(dbg)cout << "Cannot overwrite : " << x.getMesg() << endl;
567 0 : if(dbg)cout << "Open already ? : " << Table::isOpened( imagenamefull ) << " Writable ? : " << Table::isWritable( imagenamefull ) << endl;
568 0 : if(Table::isWritable( imagenamefull ))
569 : {
570 0 : if(dbg) cout << "--- Trying to open existing image : "<< imagenamefull << endl;
571 : try{
572 0 : buildImage( imPtr, imagenamefull );
573 : }
574 0 : catch (AipsError &x){
575 0 : throw( AipsError("Writable table exists, but cannot open : " + x.getMesg() ) );
576 0 : }
577 : }// is table writable
578 : else
579 : {
580 0 : throw( AipsError("Cannot overwrite existing image. : " + x.getMesg() ) );
581 : }
582 0 : }
583 : }// overwrite existing image
584 : else // open existing image ( Always tries this )
585 : {
586 : if(1) //Table::isWritable( imagenamefull ))
587 : {
588 0 : if(dbg) cout << "Trying to open existing image : "<< imagenamefull << endl;
589 : try{
590 0 : buildImage( imPtr, imagenamefull ) ;
591 :
592 0 : if( !dosumwt)
593 : {
594 : //cout << useShape << " and " << imPtr->shape() << " ---- " << useShape.product() << " : " << itsCoordSys.nCoordinates() << endl;
595 : // Check if coordsys and shape of this image are consistent with current ones (if filled)
596 :
597 0 : if( useShape.product()>0 && ! useShape.isEqual( imPtr->shape() ) )
598 : {
599 0 : ostringstream oo1,oo2;
600 0 : oo1 << useShape; oo2 << imPtr->shape();
601 0 : throw( AipsError( "There is a shape mismatch between existing images ("+oo2.str()+") and current parameters ("+oo1.str()+"). If you are attempting to restart a run with a new image shape, please change imagename and supply the old model or mask as inputs (via the startmodel or mask parameters) so that they can be regridded to the new shape before continuing." ) );
602 0 : }
603 :
604 :
605 :
606 0 : if( itsParentCoordSys.nCoordinates()>0 && checkCoordSys && ! itsParentCoordSys.near( imPtr->coordinates()) )
607 : {
608 : /// Implement an exception to get CAS-9977 to work. Modify the current coordsys to match the parent.
609 : /// "The DirectionCoordinates have differing latpoles"
610 0 : if( itsParentCoordSys.errorMessage().contains("differing latpoles") )
611 : {
612 0 : DirectionCoordinate dcord = itsParentCoordSys.directionCoordinate();
613 : //cout << "Latpole from parent : " << dcord.longLatPoles() << endl;
614 :
615 0 : DirectionCoordinate dcord2 = imPtr->coordinates().directionCoordinate();
616 : //cout << "Latpole from imPtr : " << dcord2.longLatPoles() << endl;
617 :
618 0 : LogIO os( LogOrigin("SIImageStore","Open existing Images",WHERE) );
619 0 : os << " Mismatch in Csys latpoles between existing image on disk (" << dcord2.longLatPoles() << ") and current imaging run (" << dcord.longLatPoles() << ") : " << itsParentCoordSys.errorMessage() << " -- Resetting to match image on disk" << LogIO::WARN << LogIO::POST;
620 : // cout << "Set the coordinate from the Parent value" << endl;
621 : //imPtr->setCoordinateInfo( itsParentCoordSys );
622 0 : itsParentCoordSys = imPtr->coordinates();
623 0 : }
624 :
625 : // Check again.
626 0 : if ( ! itsParentCoordSys.near( imPtr->coordinates() ) )
627 : {
628 : //cout << " Still different..." << endl;
629 0 : throw( AipsError( "There is a coordinate system mismatch between existing images on disk and current parameters ("+itsParentCoordSys.errorMessage()+"). If you are attempting to restart a run, please change imagename and supply the old model or mask as inputs (via the startmodel or mask parameters) so that they can be regridded to the new coordinate system before continuing. " ) );
630 : }
631 : //}
632 : }
633 : }// not dosumwt
634 : }
635 0 : catch (AipsError &x){
636 0 : throw( AipsError("Cannot open existing image : "+imagenamefull+" : " + x.getMesg() ) );
637 0 : }
638 : }// is table writable
639 : else // table exists but not writeable
640 : {
641 : if(dbg)cout << "Table exists but not writeable : " << imagenamefull << " --- Open : " << Table::isOpened( imagenamefull ) << endl;
642 : throw( AipsError("Image exists but not able to open for writes :"+imagenamefull+ ". Opened elsewhere : " + String::toString(Table::isOpened(imagenamefull))) );
643 : }
644 : }// open existing image
645 : }// if image exists
646 : else // image doesn't exist. make new one
647 : {
648 0 : if(dbg) cout << "Trying to open new image named : " << imagenamefull << endl;
649 : try{
650 0 : buildImage(imPtr, useShape, itsParentCoordSys, imagenamefull) ;
651 : // initialize to zeros...
652 : {
653 0 : LatticeLocker lock1(*imPtr, FileLocker::Write);
654 0 : imPtr->set(0.0);
655 0 : imPtr->flush();
656 0 : imPtr->unlock();
657 0 : }
658 : }
659 0 : catch (AipsError &x){
660 0 : throw( AipsError("Cannot make new image. : " + x.getMesg() ) );
661 0 : }
662 : }
663 :
664 :
665 : //////////////////////////////////////
666 : /*
667 : if( overwrite || !Table::isWritable( imagenamefull ) )
668 : {
669 : cout << "Trying to open new image named : " << imagenamefull << " ow:"<< overwrite << endl;
670 : imPtr.reset( new PagedImage<Float> (useShape, itsCoordSys, imagenamefull) );
671 : // initialize to zeros...
672 : imPtr->set(0.0);
673 : }
674 : else
675 : {
676 : if(Table::isWritable( imagenamefull ))
677 : {
678 : cout << "Trying to open existing image : "<< imagenamefull << endl;
679 : try{
680 : imPtr.reset( new PagedImage<Float>( imagenamefull ) );
681 : }
682 : catch (AipsError &x){
683 : cerr << "Writable table exists, but cannot open. Creating temp image. : " << x.getMesg() << endl;
684 : imPtr.reset( new TempImage<Float> (useShape, itsCoordSys) );
685 : // imPtr=new PagedImage<Float> (useShape, itsCoordSys, imagenamefull);
686 : imPtr->set(0.0);
687 : }
688 : }
689 : else
690 : {
691 : cerr << "Table " << imagenamefull << " is not writeable. Creating temp image." << endl;
692 : imPtr.reset( new TempImage<Float> (useShape, itsCoordSys) );
693 : imPtr->set(0.0);
694 : }
695 : }
696 : */
697 0 : return imPtr;
698 0 : }
699 :
700 0 : void SIImageStore::buildImage(std::shared_ptr<ImageInterface<Float> > &imptr, IPosition shape,
701 : CoordinateSystem csys, const String name)
702 : {
703 0 : LogIO os( LogOrigin("SIImageStore", "Open non-existing image", WHERE) );
704 0 : os <<"Opening image, name: " << name << LogIO::DEBUG1;
705 :
706 0 : itsOpened++;
707 : //For some reason cannot open a new paged image with UserNoread directly
708 : {
709 0 : PagedImage<Float> godot(shape, csys, name);
710 0 : godot.unlock();
711 0 : }
712 0 : TableLock::LockOption locktype=TableLock::AutoNoReadLocking;
713 : //TableLock::LockOption locktype=TableLock::UserLocking;
714 : /*if((name.contains(imageExts(PSF)) && !name.contains(imageExts(PSF)+".tt"))|| (name.contains(imageExts(RESIDUAL))&& !name.contains(imageExts(RESIDUAL)+".tt")) || (name.contains(imageExts(SUMWT)) && !name.contains(imageExts(SUMWT)+".tt"))){
715 : locktype=TableLock::UserNoReadLocking;
716 : }*/
717 0 : imptr.reset( new PagedImage<Float> (name, locktype) );
718 : {
719 0 : LatticeLocker lock1(*imptr, FileLocker::Write);
720 0 : initMetaInfo(imptr, name);
721 0 : imptr->unlock();
722 0 : }
723 : /*
724 : Int MEMFACTOR = 18;
725 : Double memoryMB=HostInfo::memoryTotal(True)/1024/(MEMFACTOR*itsOpened);
726 :
727 :
728 : TempImage<Float> *tptr = new TempImage( TiledShape(shape, tileShape()), csys, memoryBeforeLattice() ) ;
729 :
730 : tptr->setMaximumCacheSize(shape.product());
731 : tptr->cleanCache();
732 :
733 : imptr.reset( tptr );
734 :
735 : */
736 0 : }
737 :
738 0 : void SIImageStore::buildImage(std::shared_ptr<ImageInterface<Float> > &imptr, const String name)
739 : {
740 0 : LogIO os(LogOrigin("SIImageStore", "Open existing Images", WHERE));
741 0 : os <<"Opening image, name: " << name << LogIO::DEBUG1;
742 :
743 0 : itsOpened++;
744 0 : if ( Table::isReadable(name) ) {
745 0 : TableLock::LockOption locktype=TableLock::AutoNoReadLocking;
746 : /* if (
747 : ( name.contains(imageExts(PSF)) and
748 : not name.contains(imageExts(PSF) + ".tt")
749 : ) or
750 : ( name.contains(imageExts(RESIDUAL)) and
751 : not name.contains(imageExts(RESIDUAL)+".tt")
752 : ) or
753 : ( name.contains(imageExts(SUMWT)) and
754 : not name.contains(imageExts(SUMWT)+".tt")
755 : )
756 : ) {
757 : locktype=TableLock::UserNoReadLocking;
758 : }
759 : */
760 0 : Table table(name, locktype);
761 0 : String type = table.tableInfo().type();
762 0 : if ( type != TableInfo::type(TableInfo::PAGEDIMAGE) ) {
763 :
764 0 : imptr.reset( new PagedImage<Float>( table ) );
765 0 : imptr->unlock();
766 0 : return;
767 : }
768 0 : }
769 :
770 0 : LatticeBase* latt =ImageOpener::openImage(name);
771 0 : if (not latt) {
772 0 : throw AipsError("Error in opening Image : "+name);
773 : }
774 0 : DataType dtype = latt->dataType();
775 0 : if (dtype == TpFloat) {
776 0 : imptr.reset(dynamic_cast<ImageInterface<Float>* >(latt));
777 : } else {
778 0 : throw AipsError( "Need image to have float values : "+name);
779 : }
780 :
781 : /*
782 : std::shared_ptr<casacore::ImageInterface<Float> > fim;
783 : std::shared_ptr<casacore::ImageInterface<Complex> > cim;
784 :
785 : std::tie(fim , cim)=ImageFactory::fromFile(name);
786 : if (fim) {
787 : imptr.reset(
788 : dynamic_cast<std::shared_ptr<casacore::ImageInterface<Float> > >(*fim)
789 : );
790 : } else {
791 : throw AipsError("Cannot open with ImageFactory : "+name);
792 : }
793 : */
794 :
795 : /*
796 : IPosition cimageShape;
797 : CoordinateSystem cimageCoord = StokesImageUtil::CStokesCoord(
798 : itsCoordSys,
799 : whichStokes,
800 : itsDataPolRep
801 : );
802 : */
803 :
804 0 : }
805 :
806 : /**
807 : * Sets ImageInfo and MiscInfo on an image
808 : *
809 : * @param imptr image to initialize
810 : */
811 0 : void SIImageStore::initMetaInfo(std::shared_ptr<ImageInterface<Float> > &imptr,
812 : const String name)
813 : {
814 : // Check objectname, as one of the mandatory fields. What this is meant to check is -
815 : // has the metainfo been initialized? If not, grab info from associated PSF
816 0 : LatticeLocker lock1(*imptr, FileLocker::Write);
817 0 : if (not itsObjectName.empty()) {
818 0 : ImageInfo info = imptr->imageInfo();
819 0 : info.setObjectName(itsObjectName);
820 0 : imptr->setImageInfo(info);
821 0 : imptr->setMiscInfo(itsMiscInfo);
822 0 : } else if (std::string::npos == name.find(imageExts(PSF))) {
823 0 : auto srcImg = psf(0);
824 0 : if (nullptr != srcImg) {
825 0 : imptr->setImageInfo(srcImg->imageInfo());
826 0 : imptr->setMiscInfo(srcImg->miscInfo());
827 : }
828 0 : }
829 0 : imptr->unlock();
830 0 : }
831 :
832 :
833 : /////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
834 0 : void SIImageStore::setMiscInfo(const Record miscinfo)
835 : {
836 0 : itsMiscInfo = miscinfo;
837 0 : }
838 :
839 0 : void SIImageStore::setObjectName(const String name)
840 : {
841 0 : itsObjectName = name;
842 0 : }
843 :
844 : /////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
845 :
846 0 : std::shared_ptr<ImageInterface<Float> > SIImageStore::makeSubImage(const Int facet, const Int nfacets,
847 : const Int chan, const Int nchanchunks,
848 : const Int pol, const Int npolchunks,
849 : ImageInterface<Float>& image)
850 : {
851 : //assuming n x n facets
852 0 : Int nx_facets=Int(sqrt(Double(nfacets)));
853 0 : LogIO os( LogOrigin("SynthesisImager","makeFacet") );
854 : // Make the output image
855 0 : Slicer imageSlicer;
856 :
857 : // Add checks for all dimensions..
858 0 : if((facet>(nfacets-1))||(facet<0)) {
859 0 : os << LogIO::SEVERE << "Illegal facet " << facet << LogIO::POST;
860 0 : return std::shared_ptr<ImageInterface<Float> >();
861 : }
862 0 : IPosition imshp=image.shape();
863 0 : IPosition blc(imshp.nelements(), 0);
864 0 : IPosition trc=imshp-1;
865 0 : IPosition inc(imshp.nelements(), 1);
866 :
867 : /// Facets
868 0 : Int facetx = facet % nx_facets;
869 0 : Int facety = (facet - facetx) / nx_facets;
870 0 : Int sizex = imshp(0) / nx_facets;
871 0 : Int sizey = imshp(1) / nx_facets;
872 0 : blc(1) = facety * sizey;
873 0 : trc(1) = blc(1) + sizey - 1;
874 0 : blc(0) = facetx * sizex;
875 0 : trc(0) = blc(0) + sizex - 1;
876 :
877 : /// Pol Chunks
878 0 : Int sizepol = imshp(2) / npolchunks;
879 0 : blc(2) = pol * sizepol;
880 0 : trc(2) = blc(2) + sizepol - 1;
881 :
882 : /// Chan Chunks
883 0 : Int sizechan = imshp(3) / nchanchunks;
884 0 : blc(3) = chan * sizechan;
885 0 : trc(3) = blc(3) + sizechan - 1;
886 :
887 0 : LCBox::verify(blc, trc, inc, imshp);
888 0 : Slicer imslice(blc, trc, inc, Slicer::endIsLast);
889 :
890 : // Now create the sub image
891 0 : std::shared_ptr<ImageInterface<Float> > referenceImage( new SubImage<Float>(image, imslice, True) );
892 : {
893 0 : LatticeLocker lock1(*referenceImage, FileLocker::Write);
894 0 : referenceImage->setMiscInfo(image.miscInfo());
895 0 : referenceImage->setUnits(image.units());
896 :
897 0 : }
898 :
899 : // cout << "Made Ref subimage of shape : " << referenceImage->shape() << endl;
900 :
901 0 : return referenceImage;
902 :
903 0 : }
904 :
905 :
906 :
907 : //////////////////////////////////////////////////////////////////////////////////////////////////////
908 :
909 0 : SIImageStore::~SIImageStore()
910 : {
911 0 : }
912 :
913 : //////////////////////////////////////////////////////////////////////////////////////////////////////
914 : //////////////////////////////////////////////////////////////////////////////////////////////////////
915 :
916 0 : Bool SIImageStore::releaseLocks()
917 : {
918 : //LogIO os( LogOrigin("SIImageStore","releaseLocks",WHERE) );
919 :
920 : // String fname( itsImageName+String(".info") );
921 : // makePersistent( fname );
922 :
923 0 : if( itsPsf ) releaseImage( itsPsf );
924 0 : if( itsModel ) { releaseImage( itsModel ); }
925 0 : if( itsResidual ) releaseImage( itsResidual );
926 0 : if( itsImage ) releaseImage( itsImage );
927 0 : if( itsWeight ) releaseImage( itsWeight );
928 0 : if( itsMask ) releaseImage( itsMask );
929 0 : if( itsSumWt ) releaseImage( itsSumWt );
930 0 : if( itsGridWt ) releaseImage( itsGridWt );
931 0 : if( itsPB ) releaseImage( itsPB );
932 0 : if( itsImagePBcor ) releaseImage( itsImagePBcor );
933 :
934 0 : return True; // do something more intelligent here.
935 : }
936 :
937 0 : Bool SIImageStore::releaseComplexGrids()
938 : {
939 : //LogIO os( LogOrigin("SIImageStore","releaseComplexGrids",WHERE) );
940 :
941 0 : if( itsForwardGrid ) releaseImage( itsForwardGrid );
942 0 : if( itsBackwardGrid ) releaseImage( itsBackwardGrid );
943 :
944 0 : return True; // do something more intelligent here.
945 : }
946 :
947 0 : void SIImageStore::releaseImage( std::shared_ptr<ImageInterface<Float> > &im )
948 : {
949 : //cerr << this << " releaseimage " << im.get() << endl;
950 : //LogIO os( LogOrigin("SIImageStore","releaseLocks",WHERE) );
951 0 : im->flush();
952 : //os << LogIO::WARN << "clear cache" << LogIO::POST;
953 0 : im->clearCache();
954 : //os << LogIO::WARN << "unlock" << LogIO::POST;
955 0 : im->unlock();
956 : //os << LogIO::WARN << "tempClose" << LogIO::POST;
957 : //im->tempClose();
958 : //os << LogIO::WARN << "NULL" << LogIO::POST;
959 0 : im.reset(); // This was added to allow modification by modules independently
960 0 : }
961 :
962 0 : void SIImageStore::releaseImage( std::shared_ptr<ImageInterface<Complex> > &im )
963 : {
964 0 : im->tempClose();
965 0 : }
966 :
967 : //////////////////////////////////////////////////////////////////////////////////////////////////////
968 : //////////////////////////////////////////////////////////////////////////////////////////////////////
969 0 : Vector<String> SIImageStore::getModelImageName()
970 : {
971 0 : Vector<String> mods(1);
972 0 : mods[0]=itsImageName + imageExts(MODEL);
973 0 : return mods;
974 0 : }
975 :
976 0 : Long SIImageStore::estimateRAM(){
977 : //right now this is estimated at 2MB for the 2 complex lattices;
978 0 : return Long(2000);
979 : }
980 0 : void SIImageStore::setModelImage( const Vector<String> &modelnames)
981 : {
982 0 : LogIO os( LogOrigin("SIImageStore","setModelImage",WHERE) );
983 :
984 0 : if( modelnames.nelements() > 1 )
985 0 : {throw( AipsError("Multiple starting model images are currently not supported. Please merge them before supplying as input to startmodel"));
986 : /// If needed, THIS is the place to add code to support lists of model images... perhaps regrid separately and add them up or some such thing.
987 : }
988 :
989 0 : if( modelnames.nelements()==1 ) { setModelImageOne( modelnames[0] ); }
990 0 : }
991 :
992 :
993 :
994 0 : void SIImageStore::setModelImageOne( const String &modelname , Int nterm)
995 : {
996 0 : LogIO os( LogOrigin("SIImageStore","setModelImageOne",WHERE) );
997 :
998 0 : if(modelname==String("")) return;
999 :
1000 0 : Bool multiterm=False;
1001 0 : if(nterm>-1)multiterm=True;
1002 0 : if(nterm==-1)nterm=0;
1003 :
1004 0 : Directory immodel( modelname ); // +String(".model") );
1005 0 : if( !immodel.exists() )
1006 : {
1007 0 : os << "Starting model image " << modelname << " does not exist. No initial prediction will be done" << ((multiterm)?String(" for term")+String::toString(nterm) :"") << LogIO::POST;
1008 0 : return;
1009 : }
1010 :
1011 : // master merge 2019.01.08 - leaving in the commnets for now but clean up after it is verified
1012 : //SHARED_PTR<PagedImage<Float> > newmodel( new PagedImage<Float>( modelname ) ); //+String(".model") ) );
1013 : //SHARED_PTR<ImageInterface<Float> > newmodel;
1014 0 : std::shared_ptr<ImageInterface<Float> > newmodel;
1015 0 : buildImage(newmodel, modelname);
1016 : // in master
1017 : //std::shared_ptr<PagedImage<Float> > newmodel( new PagedImage<Float>( modelname ) ); //+String(".model") ) );
1018 :
1019 0 : Bool hasMask = newmodel->isMasked(); /// || newmodel->hasPixelMask() ;
1020 :
1021 0 : if( hasMask )
1022 : {
1023 :
1024 0 : os << "Input startmodel has an internal mask. Setting masked pixels to zero" << LogIO::POST;
1025 :
1026 : try {
1027 :
1028 : ////// Neat function to replace masked pixels, but it will do it in-place.
1029 : ////// We need to not modify the input model on disk, but apply the mask only OTF before
1030 : ////// regridding to the target image,.
1031 : // ImageMaskedPixelReplacer<Float> impr( newmodel, 0, "" );
1032 : // impr.replace("0", False, False );
1033 :
1034 :
1035 0 : TempImage<Float> maskmodel( newmodel->shape(), newmodel->coordinates() );
1036 0 : IPosition inshape = newmodel->shape();
1037 0 : for(Int pol=0; pol<inshape[2]; pol++)
1038 : {
1039 0 : for(Int chan=0; chan<inshape[3]; chan++)
1040 : {
1041 0 : IPosition pos(4,0,0,pol,chan);
1042 : std::shared_ptr<ImageInterface<Float> > subim=makeSubImage(0,1,
1043 0 : chan, inshape[3],
1044 0 : pol, inshape[2],
1045 0 : (*newmodel) );
1046 :
1047 : std::shared_ptr<ImageInterface<Float> > submaskmodel=makeSubImage(0,1,
1048 0 : chan, inshape[3],
1049 0 : pol, inshape[2],
1050 0 : maskmodel );
1051 :
1052 0 : ArrayLattice<Bool> pixmask( subim->getMask() );
1053 0 : LatticeExpr<Float> masked( (*subim) * iif(pixmask,1.0,0.0) );
1054 0 : submaskmodel->copyData( masked );
1055 0 : }
1056 : }
1057 :
1058 :
1059 :
1060 : // Check shapes, coordsys with those of other images. If different, try to re-grid here.
1061 0 : if( (newmodel->shape() != model(nterm)->shape()) || (! itsCoordSys.near(newmodel->coordinates() )) )
1062 : {
1063 0 : os << "Regridding input model " << modelname << " to target coordinate system for " << itsImageName << ".model" << ((multiterm)?".tt"+String::toString(nterm) :"") << LogIO::POST;
1064 0 : regridToModelImage( maskmodel, nterm );
1065 : }
1066 : else
1067 : {
1068 0 : os << "Copying input model " << modelname << " to " << itsImageName << ".model" << ((multiterm)?".tt"+String::toString(nterm) :"") << LogIO::POST;
1069 0 : model(nterm)->copyData( LatticeExpr<Float> (maskmodel) );
1070 : }
1071 :
1072 :
1073 0 : } catch (AipsError &x) {
1074 0 : throw(AipsError("Setting masked pixels to zero for input startmodel : "+ x.getMesg()));
1075 0 : }
1076 :
1077 : }// hasMask
1078 : else // nomask
1079 : {
1080 :
1081 : // Check shapes, coordsys with those of other images. If different, try to re-grid here.
1082 0 : if( (newmodel->shape() != model(nterm)->shape()) || (! itsCoordSys.near(newmodel->coordinates() )) )
1083 : {
1084 0 : os << "Regridding input model " << modelname << " to target coordinate system for " << itsImageName << ".model" << ((multiterm)?".tt"+String::toString(nterm) :"") << LogIO::POST;
1085 0 : regridToModelImage( *newmodel, nterm );
1086 : }
1087 : else
1088 : {
1089 0 : os << "Copying input model " << modelname << " to " << itsImageName << ".model" << ((multiterm)?".tt"+String::toString(nterm) :"") << LogIO::POST;
1090 0 : model(nterm)->copyData( LatticeExpr<Float> (*newmodel) );
1091 : }
1092 : }//nomask
1093 0 : }
1094 :
1095 : //////////////////////////////////////////////////////////////////////////////////////////////////////
1096 : //////////////////////////////////////////////////////////////////////////////////////////////////////
1097 :
1098 0 : IPosition SIImageStore::getShape()
1099 : {
1100 0 : return itsImageShape;
1101 : }
1102 :
1103 0 : String SIImageStore::getName()
1104 : {
1105 0 : return itsImageName;
1106 : }
1107 :
1108 0 : String SIImageStore::imageFullName(IMAGE_IDS imageId)
1109 : {
1110 0 : return itsImageName + imageExts(imageId);
1111 : }
1112 :
1113 0 : uInt SIImageStore::getNTaylorTerms(Bool /*dopsf*/)
1114 : {
1115 0 : return 1;
1116 : }
1117 :
1118 : /*
1119 : void SIImageStore::checkRef( std::shared_ptr<ImageInterface<Float> > ptr, const String label )
1120 : {
1121 : if( ! ptr && itsImageName==String("reference") )
1122 : {throw(AipsError("Internal Error : Attempt to access null subImageStore "+label + " by reference."));}
1123 : }
1124 : */
1125 :
1126 0 : void SIImageStore::accessImage( std::shared_ptr<ImageInterface<Float> > &ptr,
1127 : std::shared_ptr<ImageInterface<Float> > &parentptr,
1128 : const String label )
1129 : {
1130 : // if ptr is not null, assume it's OK. Perhaps add more checks.
1131 :
1132 : //cerr << "ACCIM itsptr" << ptr.get() << " parent " << parentptr.get() << " label " << label << endl;
1133 :
1134 0 : Bool sw=False;
1135 0 : if( label.contains(imageExts(SUMWT)) ) sw=True;
1136 :
1137 0 : if( !ptr )
1138 : {
1139 : //cout << itsNFacets << " " << itsNChanChunks << " " << itsNPolChunks << endl;
1140 0 : if( itsNFacets>1 || itsNChanChunks>1 || itsNPolChunks>1 )
1141 : {
1142 0 : if( ! parentptr )
1143 : {
1144 : //cout << "Making parent : " << itsImageName+label << " sw : " << sw << endl;
1145 0 : parentptr = openImage(itsImageName+label , itsOverWrite, sw, itsNFacets );
1146 0 : if( sw) {setUseWeightImage( *parentptr, itsUseWeight ); }
1147 : }
1148 : // cout << "Making facet " << itsFacetId << " out of " << itsNFacets << endl;
1149 : //cout << "Making chunk " << itsChanId << " out of " << itsNChanChunks << endl;
1150 : //ptr = makeFacet( itsFacetId, itsNFacets*itsNFacets, *parentptr );
1151 0 : ptr = makeSubImage( itsFacetId, itsNFacets*itsNFacets,
1152 : itsChanId, itsNChanChunks,
1153 : itsPolId, itsNPolChunks,
1154 0 : *parentptr );
1155 0 : if( ! sw )
1156 : {
1157 0 : itsImageShape = ptr->shape(); // over and over again.... FIX.
1158 0 : itsCoordSys = ptr->coordinates();
1159 0 : itsMiscInfo = ptr->miscInfo();
1160 : }
1161 :
1162 : //cout << "accessImage : " << label << " : sumwt : " << sw << " : shape : " << itsImageShape << endl;
1163 :
1164 : }
1165 : else
1166 : { //no facets of chanchunks
1167 0 : if(!parentptr){
1168 : ///coordsys for psf can be different ...shape should be the same.
1169 0 : ptr = openImage(itsImageName+label , itsOverWrite, sw, 1, !(label.contains(imageExts(PSF)))); }
1170 : else{
1171 0 : ptr=parentptr;
1172 : }
1173 : //cout << "Opening image : " << itsImageName+label << " of shape " << ptr->shape() << endl;
1174 : }
1175 : }
1176 :
1177 : //cerr << "ACCIM2 ptr " << ptr.get() << " lock " << itsReadLock.get() << endl;
1178 : //itsReadLock.reset(new LatticeLocker(*ptr, FileLocker::Read));
1179 :
1180 : // DirectionCoordinate dcord = ptr->coordinates().directionCoordinate();
1181 : // cout << "Latpole from " << label << " : " << dcord.longLatPoles() << endl;
1182 :
1183 0 : }
1184 :
1185 :
1186 0 : std::shared_ptr<ImageInterface<Float> > SIImageStore::psf(uInt /*nterm*/)
1187 : {
1188 0 : accessImage( itsPsf, itsParentPsf, imageExts(PSF) );
1189 :
1190 0 : return itsPsf;
1191 : }
1192 0 : std::shared_ptr<ImageInterface<Float> > SIImageStore::residual(uInt /*nterm*/)
1193 : {
1194 0 : accessImage( itsResidual, itsParentResidual, imageExts(RESIDUAL) );
1195 : // Record mi = itsResidual->miscInfo(); ostringstream oss;mi.print(oss);cout<<"MiscInfo(res) : " << oss.str() << endl;
1196 0 : return itsResidual;
1197 : }
1198 0 : std::shared_ptr<ImageInterface<Float> > SIImageStore::weight(uInt /*nterm*/)
1199 : {
1200 0 : accessImage( itsWeight, itsParentWeight, imageExts(WEIGHT) );
1201 0 : return itsWeight;
1202 : }
1203 :
1204 0 : std::shared_ptr<ImageInterface<Float> > SIImageStore::sumwt(uInt /*nterm*/)
1205 : {
1206 :
1207 0 : accessImage( itsSumWt, itsParentSumWt, imageExts(SUMWT) );
1208 :
1209 0 : if( itsNFacets>1 || itsNChanChunks>1 || itsNPolChunks>1 )
1210 0 : { itsUseWeight = getUseWeightImage( *itsParentSumWt );}
1211 0 : setUseWeightImage( *itsSumWt , itsUseWeight); // Sets a flag in the SumWt image.
1212 :
1213 0 : return itsSumWt;
1214 : }
1215 :
1216 0 : std::shared_ptr<ImageInterface<Float> > SIImageStore::model(uInt /*nterm*/)
1217 : {
1218 0 : accessImage( itsModel, itsParentModel, imageExts(MODEL) );
1219 0 : LatticeLocker lock1(*itsModel, FileLocker::Write);
1220 : // Set up header info the first time.
1221 0 : itsModel->setUnits("Jy/pixel");
1222 :
1223 0 : return itsModel;
1224 0 : }
1225 0 : std::shared_ptr<ImageInterface<Float> > SIImageStore::image(uInt /*nterm*/)
1226 : {
1227 0 : accessImage( itsImage, itsParentImage, imageExts(IMAGE) );
1228 0 : LatticeLocker lock1(*itsImage, FileLocker::Write);
1229 0 : itsImage->setUnits(Unit("Jy/beam"));
1230 0 : return itsImage;
1231 0 : }
1232 :
1233 0 : std::shared_ptr<ImageInterface<Float> > SIImageStore::mask(uInt /*nterm*/)
1234 : {
1235 0 : accessImage( itsMask, itsParentMask, imageExts(MASK) );
1236 0 : return itsMask;
1237 : }
1238 0 : std::shared_ptr<ImageInterface<Float> > SIImageStore::gridwt(IPosition newshape)
1239 :
1240 : {
1241 0 : if(newshape.empty()){
1242 0 : accessImage( itsGridWt, itsParentGridWt, imageExts(GRIDWT) );
1243 : }
1244 : else{
1245 0 : if(!itsGridWt || (itsGridWt && (itsGridWt->shape() != newshape))){
1246 0 : itsGridWt.reset(); // deassign previous one hopefully it'll close it
1247 0 : CoordinateSystem newcoordsys=itsCoordSys;
1248 0 : if(newshape.nelements() > 4){
1249 0 : Matrix<Double> pc(1,1); pc = 1.0;
1250 0 : LinearCoordinate zc(Vector<String>(1, "FIELD_ORDER"), Vector<String>(1, ""), Vector<Double>(1, 0.0), Vector<Double>(1,1.0), pc, Vector<Double>(1,0.0));
1251 0 : newcoordsys.addCoordinate(zc);
1252 0 : }
1253 0 : itsGridWt.reset(new PagedImage<Float>(newshape, newcoordsys, itsImageName+ imageExts(GRIDWT)));
1254 0 : initMetaInfo(itsGridWt, itsImageName+ imageExts(GRIDWT));
1255 :
1256 0 : }
1257 : }
1258 : /// change the coordinate system here, to uv.
1259 0 : return itsGridWt;
1260 : }
1261 :
1262 0 : std::shared_ptr<ImageInterface<Float> > SIImageStore::tempworkimage(uInt /*term*/){
1263 0 : if(itsTempWorkIm) return itsTempWorkIm;
1264 0 : itsTempWorkIm.reset(new PagedImage<Float>(itsImageShape, itsCoordSys, itsImageName+ ".work.temp"));
1265 0 : static_cast<PagedImage<Float>* > (itsTempWorkIm.get())->set(0.0);
1266 0 : itsTempWorkIm->flush();
1267 0 : static_cast<PagedImage<Float>* > (itsTempWorkIm.get())->table().markForDelete();
1268 0 : return itsTempWorkIm;
1269 : }
1270 :
1271 0 : std::shared_ptr<ImageInterface<Float> > SIImageStore::pb(uInt /*nterm*/)
1272 : {
1273 0 : accessImage( itsPB, itsParentPB, imageExts(PB) );
1274 0 : return itsPB;
1275 : }
1276 0 : std::shared_ptr<ImageInterface<Float> > SIImageStore::imagepbcor(uInt /*nterm*/)
1277 : {
1278 0 : accessImage( itsImagePBcor, itsParentImagePBcor, imageExts(IMAGEPBCOR) );
1279 0 : LatticeLocker lock1(*itsImagePBcor, FileLocker::Write);
1280 0 : itsImagePBcor->setUnits(Unit("Jy/beam"));
1281 0 : return itsImagePBcor;
1282 0 : }
1283 :
1284 0 : std::shared_ptr<ImageInterface<Complex> > SIImageStore::forwardGrid(uInt /*nterm*/){
1285 0 : if( itsForwardGrid ) // && (itsForwardGrid->shape() == itsImageShape))
1286 : {
1287 : // cout << "Forward grid has shape : " << itsForwardGrid->shape() << endl;
1288 0 : return itsForwardGrid;
1289 : }
1290 0 : Vector<Int> whichStokes(0);
1291 0 : IPosition cimageShape;
1292 0 : cimageShape=itsImageShape;
1293 0 : MFrequency::Types freqframe = itsCoordSys.spectralCoordinate(itsCoordSys.findCoordinate(Coordinate::SPECTRAL)).frequencySystem(True);
1294 : // No need to set a conversion layer if image is in LSRK already or it is 'Undefined'
1295 0 : if(freqframe != MFrequency::LSRK && freqframe!=MFrequency::Undefined && freqframe!=MFrequency::REST)
1296 0 : { itsCoordSys.setSpectralConversion("LSRK"); }
1297 0 : CoordinateSystem cimageCoord = StokesImageUtil::CStokesCoord( itsCoordSys,
1298 0 : whichStokes, itsDataPolRep);
1299 0 : cimageCoord.setObsInfo(itsCoordSys.obsInfo());
1300 0 : cimageShape(2)=whichStokes.nelements();
1301 : //cout << "Making forward grid of shape : " << cimageShape << " for imshape : " << itsImageShape << endl;
1302 0 : itsForwardGrid.reset( new TempImage<Complex>(TiledShape(cimageShape, tileShape()), cimageCoord, memoryBeforeLattice()) );
1303 : //if(image())
1304 0 : if(hasRestored()){
1305 0 : LatticeLocker lock1(*itsForwardGrid, FileLocker::Write);
1306 0 : itsForwardGrid->setImageInfo((image())->imageInfo());
1307 :
1308 0 : }
1309 0 : return itsForwardGrid;
1310 0 : }
1311 :
1312 0 : std::shared_ptr<ImageInterface<Complex> > SIImageStore::backwardGrid(uInt /*nterm*/){
1313 0 : if( itsBackwardGrid ) //&& (itsBackwardGrid->shape() == itsImageShape))
1314 : {
1315 : // cout << "Backward grid has shape : " << itsBackwardGrid->shape() << endl;
1316 0 : return itsBackwardGrid;
1317 : }
1318 0 : Vector<Int> whichStokes(0);
1319 0 : IPosition cimageShape;
1320 0 : cimageShape=itsImageShape;
1321 0 : MFrequency::Types freqframe = itsCoordSys.spectralCoordinate(itsCoordSys.findCoordinate(Coordinate::SPECTRAL)).frequencySystem(True);
1322 : // No need to set a conversion layer if image is in LSRK already or it is 'Undefined'
1323 0 : if(freqframe != MFrequency::LSRK && freqframe!=MFrequency::Undefined && freqframe!=MFrequency::REST )
1324 0 : { itsCoordSys.setSpectralConversion("LSRK"); }
1325 0 : CoordinateSystem cimageCoord = StokesImageUtil::CStokesCoord( itsCoordSys,
1326 0 : whichStokes, itsDataPolRep);
1327 0 : cimageCoord.setObsInfo(itsCoordSys.obsInfo());
1328 0 : cimageShape(2)=whichStokes.nelements();
1329 : //cout << "Making backward grid of shape : " << cimageShape << " for imshape : " << itsImageShape << endl;
1330 0 : itsBackwardGrid.reset( new TempImage<Complex>(TiledShape(cimageShape, tileShape()), cimageCoord, memoryBeforeLattice()) );
1331 : //if(image())
1332 0 : if(hasRestored()){
1333 0 : LatticeLocker lock1(*itsBackwardGrid, FileLocker::Write);
1334 0 : itsBackwardGrid->setImageInfo((image())->imageInfo());
1335 0 : }
1336 0 : return itsBackwardGrid;
1337 0 : }
1338 0 : Double SIImageStore::memoryBeforeLattice(){
1339 : //Calculate how much memory to use per temporary images before disking
1340 0 : return 1.0; /// in MB
1341 : }
1342 0 : IPosition SIImageStore::tileShape(){
1343 : //Need to have settable stuff here or algorith to determine this
1344 0 : return IPosition(4, min(itsImageShape[0],1000), min(itsImageShape[1],1000), 1, 1);
1345 : }
1346 :
1347 : // TODO : Move to an image-wrapper class ? Same function exists in SynthesisDeconvolver.
1348 0 : Bool SIImageStore::doesImageExist(String imagename)
1349 : {
1350 0 : LogIO os( LogOrigin("SIImageStore","doesImageExist",WHERE) );
1351 0 : Directory image( imagename );
1352 0 : return image.exists();
1353 0 : }
1354 :
1355 :
1356 0 : void SIImageStore::resetImages( Bool resetpsf, Bool resetresidual, Bool resetweight )
1357 : {
1358 0 : if( resetpsf ){
1359 0 : LatticeLocker lock1(*(psf()), FileLocker::Write);
1360 0 : psf()->set(0.0);
1361 :
1362 0 : }
1363 0 : if( resetresidual ) {
1364 : // removeMask( residual() );
1365 0 : LatticeLocker lock1(*(residual()), FileLocker::Write);
1366 0 : residual()->set(0.0);
1367 0 : }
1368 0 : if( resetweight && itsWeight ){
1369 0 : LatticeLocker lock1(*(weight()), FileLocker::Write);
1370 0 : weight()->set(0.0);
1371 0 : }
1372 0 : if( resetweight ){
1373 0 : LatticeLocker lock1(*(sumwt()), FileLocker::Write);
1374 0 : sumwt()->set(0.0);
1375 0 : }
1376 0 : }
1377 :
1378 0 : void SIImageStore::addImages( std::shared_ptr<SIImageStore> imagestoadd,
1379 : Bool addpsf, Bool addresidual, Bool addweight, Bool adddensity)
1380 : {
1381 :
1382 0 : if(addpsf)
1383 : {
1384 0 : LatticeExpr<Float> adderPsf( *(psf()) + *(imagestoadd->psf()) );
1385 0 : psf()->copyData(adderPsf);
1386 0 : }
1387 0 : if(addresidual)
1388 : {
1389 0 : LatticeExpr<Float> adderRes( *(residual()) + *(imagestoadd->residual()) );
1390 0 : residual()->copyData(adderRes);
1391 0 : }
1392 0 : if(addweight)
1393 : {
1394 0 : if( getUseWeightImage( *(imagestoadd->sumwt()) ) ) // Access and add weight only if it is needed.
1395 : {
1396 0 : LatticeExpr<Float> adderWeight( *(weight()) + *(imagestoadd->weight()) );
1397 0 : weight()->copyData(adderWeight);
1398 0 : }
1399 :
1400 : /*
1401 : Array<Float> qqq, www;
1402 : imagestoadd->sumwt()->get(qqq,True);
1403 : sumwt()->get(www,True);
1404 : cout << "SUMWT : Adding : " << qqq << " to " << www << endl;
1405 : */
1406 :
1407 0 : LatticeExpr<Float> adderSumWt( *(sumwt()) + *(imagestoadd->sumwt()) );
1408 0 : sumwt()->copyData(adderSumWt);
1409 0 : setUseWeightImage( *sumwt(), getUseWeightImage(*(imagestoadd->sumwt()) ) );
1410 :
1411 0 : }
1412 0 : if(adddensity)
1413 : {
1414 0 : LatticeExpr<Float> adderDensity( *(gridwt()) + *(imagestoadd->gridwt()) );
1415 0 : gridwt()->copyData(adderDensity);
1416 0 : }
1417 :
1418 0 : }
1419 :
1420 0 : void SIImageStore::setWeightDensity( std::shared_ptr<SIImageStore> imagetoset )
1421 : {
1422 0 : LogIO os( LogOrigin("SIImageStore","setWeightDensity",WHERE) );
1423 : //gridwt()->copyData( LatticeExpr<Float> ( *(imagetoset->gridwt()) ) );
1424 : //looks like you have to call them before hand or it crashes in parallel sometimes
1425 0 : IPosition shape=(imagetoset->gridwt())->shape();
1426 0 : os << LogIO::DEBUG2 << "SHAPES " << imagetoset->gridwt()->shape() << " " << gridwt()->shape() << endl;
1427 0 : (gridwt(shape))->copyData( LatticeExpr<Float> ( *(imagetoset->gridwt()) ) );
1428 :
1429 0 : }
1430 :
1431 : // TODO
1432 : // cout << "WARN : get getPbMax right for cube.... weight is indexed on chan and pol." << endl;
1433 0 : Double SIImageStore::getPbMax()
1434 : {
1435 :
1436 : //// Don't do any extra norm. Minor cycle will operate with native PB.
1437 : //return 1.0;
1438 :
1439 : //// Normalize PB to 1 at the center of the image OF CHANNEL ZERO
1440 :
1441 : // IPosition shp = weight(0)->shape();
1442 : // IPosition center(4, shp[0]/2, shp[1]/2,0,0);
1443 : // return sqrt( weight(0)->getAt( center ) );
1444 :
1445 :
1446 : //// Normalize PB to 1 at the location of the maximum (across all chans..)
1447 :
1448 0 : LatticeExprNode le( sqrt(max( *(weight(0)) )) );
1449 0 : return le.getFloat();
1450 :
1451 0 : }
1452 :
1453 0 : Double SIImageStore::getPbMax(Int pol,Int chan)
1454 : {
1455 :
1456 : //// Normalize PB to 1 at the location of the maximum (per pol,chan)
1457 :
1458 0 : CountedPtr<ImageInterface<Float> > subim=makeSubImage(0, 1,
1459 0 : chan, itsImageShape[3],
1460 0 : pol, itsImageShape[2],
1461 0 : *weight(0));
1462 :
1463 0 : return sqrt(max(subim->get()));
1464 0 : }
1465 :
1466 0 : void SIImageStore::makePBFromWeight(const Float pblimit)
1467 : {
1468 0 : LogIO os( LogOrigin("SIImageStore","makePBFromWeight",WHERE) );
1469 :
1470 0 : for(Int pol=0; pol<itsImageShape[2]; pol++)
1471 : {
1472 0 : for(Int chan=0; chan<itsImageShape[3]; chan++)
1473 : {
1474 :
1475 0 : itsPBScaleFactor = getPbMax(pol,chan);
1476 :
1477 0 : if(itsPBScaleFactor<=0){os << LogIO::NORMAL1 << "Skipping normalization for C:" << chan << " P:" << pol << " because pb max is zero " << LogIO::POST;}
1478 : else {
1479 :
1480 0 : CountedPtr<ImageInterface<Float> > wtsubim=makeSubImage(0,1,
1481 0 : chan, itsImageShape[3],
1482 0 : pol, itsImageShape[2],
1483 0 : *weight() );
1484 0 : CountedPtr<ImageInterface<Float> > pbsubim=makeSubImage(0,1,
1485 0 : chan, itsImageShape[3],
1486 0 : pol, itsImageShape[2],
1487 0 : *pb() );
1488 :
1489 :
1490 0 : LatticeExpr<Float> normed( sqrt(abs(*wtsubim)) / itsPBScaleFactor );
1491 0 : LatticeExpr<Float> limited( iif( normed > fabs(pblimit) , normed, 0.0 ) );
1492 0 : pbsubim->copyData( limited );
1493 0 : }// if not zero
1494 : }
1495 : }
1496 :
1497 0 : if((pb()->getDefaultMask()==""))
1498 : {
1499 : //Remove the old mask as it is no longer valid
1500 : //removeMask( pb() );
1501 :
1502 : // if( pblimit >= 0.0 )
1503 : {
1504 : //MSK//
1505 0 : LatticeExpr<Bool> pbmask( iif( *pb() > fabs(pblimit) , True , False ) );
1506 : //MSK//
1507 0 : createMask( pbmask, pb() );
1508 0 : pb()->pixelMask().unlock();
1509 0 : }
1510 :
1511 : }
1512 0 : weight()->unlock();
1513 0 : pb()->unlock();
1514 0 : }
1515 :
1516 0 : void SIImageStore::makePBImage(const Float pblimit)
1517 : {
1518 0 : LogIO os( LogOrigin("SIImageStore","makePBImage",WHERE) );
1519 :
1520 0 : if( hasPB() )
1521 : {
1522 :
1523 0 : for(Int pol=0; pol<itsImageShape[2]; pol++)
1524 : {
1525 0 : for(Int chan=0; chan<itsImageShape[3]; chan++)
1526 : {
1527 :
1528 0 : CountedPtr<ImageInterface<Float> > pbsubim=makeSubImage(0,1,
1529 0 : chan, itsImageShape[3],
1530 0 : pol, itsImageShape[2],
1531 0 : *pb() );
1532 :
1533 : // Norm by the max
1534 0 : LatticeExprNode elmax= max( *pbsubim );
1535 0 : Float fmax = abs(elmax.getFloat());
1536 : //If there are multiple overlap of beam such that the peak is larger than 1 then normalize
1537 : //otherwise leave as is
1538 0 : if(fmax>1.0)
1539 : {
1540 0 : LatticeExpr<Float> normed( (*pbsubim) / fmax );
1541 0 : LatticeExpr<Float> limited( iif( normed > fabs(pblimit) , normed, 0.0 ) );
1542 0 : pbsubim->copyData( limited );
1543 0 : }
1544 : else
1545 : {
1546 0 : LatticeExpr<Float> limited( iif((*pbsubim) > fabs(pblimit) , (*pbsubim), 0.0 ) );
1547 0 : pbsubim->copyData( limited );
1548 0 : }
1549 0 : }
1550 : }
1551 :
1552 0 : if((pb()->getDefaultMask()==""))// && pblimit >= 0.0)
1553 : {
1554 : // removeMask( pb() );
1555 : //MSK//
1556 0 : LatticeExpr<Bool> pbmask( iif( *pb() > fabs(pblimit) , True , False ) );
1557 : //MSK//
1558 0 : createMask( pbmask, pb() );
1559 0 : pb()->pixelMask().unlock();
1560 0 : }
1561 :
1562 : }// if hasPB
1563 0 : pb()->unlock();
1564 :
1565 0 : }
1566 :
1567 0 : Bool SIImageStore::createMask(LatticeExpr<Bool> &lemask,
1568 : CountedPtr<ImageInterface<Float> > outimage)
1569 : {
1570 : //cout << "Calling makeMask for mask0 for " << outimage->name() << endl;
1571 : try
1572 : {
1573 0 : LatticeLocker lock1(*outimage, FileLocker::Write);
1574 0 : ImageRegion outreg = outimage->makeMask("mask0",False,True);
1575 0 : LCRegion& outmask=outreg.asMask();
1576 0 : outmask.copyData(lemask);
1577 0 : outimage->defineRegion("mask0",outreg, RegionHandler::Masks, True);
1578 :
1579 0 : outimage->setDefaultMask("mask0");
1580 :
1581 0 : outimage->unlock();
1582 0 : outimage->tempClose();
1583 :
1584 : // outimage->table().unmarkForDelete();
1585 0 : }
1586 0 : catch (const AipsError& x) {
1587 0 : throw(AipsError("Error in creating internal T/F mask : " + x.getMesg() ));
1588 0 : }
1589 :
1590 0 : return True;
1591 : }
1592 :
1593 0 : Bool SIImageStore::copyMask(CountedPtr<ImageInterface<Float> > inimage,
1594 : CountedPtr<ImageInterface<Float> > outimage)
1595 : {
1596 : // cout << "In copyMask for " << outimage->name() << endl;
1597 :
1598 : try
1599 : {
1600 0 : if( (inimage->getDefaultMask()).matches("mask0") ) // input mask exists.
1601 0 : {LatticeLocker lock1(*outimage, FileLocker::Write);
1602 0 : removeMask(outimage);
1603 :
1604 : // // clear output image mask
1605 : // if( (outimage->getDefaultMask()).matches("mask0") )
1606 : // {outimage->setDefaultMask("");
1607 : // outimage->removeRegion("mask0");}
1608 : // get mask from input image
1609 :
1610 0 : ImageRegion outreg=outimage->makeMask("mask0", False, True);
1611 0 : LCRegion& outmask=outreg.asMask();
1612 0 : outmask.copyData(inimage->getRegion("mask0").asLCRegion());
1613 0 : outimage->defineRegion("mask0",outreg, RegionHandler::Masks,True);
1614 0 : outimage->setDefaultMask("mask0");
1615 0 : }
1616 : }
1617 0 : catch (const AipsError& x) {
1618 0 : throw(AipsError("Error in copying internal T/F mask : " + x.getMesg() ));
1619 0 : }
1620 :
1621 0 : return True;
1622 : }
1623 :
1624 0 : void SIImageStore::removeMask(CountedPtr<ImageInterface<Float> > im)
1625 : {
1626 : try
1627 : {
1628 : // // clear output image mask
1629 : // if( (im->getDefaultMask()).matches("mask0") )
1630 : // {im->setDefaultMask("");
1631 : // im->removeRegion("mask0");}
1632 : ///Remove the old mask as it is no longer valid
1633 0 : LatticeLocker lock1(*im, FileLocker::Write);
1634 0 : if (im-> getDefaultMask() != String(""))
1635 : {
1636 0 : String strung=im->getDefaultMask();
1637 0 : im->setDefaultMask("");
1638 0 : im->removeRegion(strung);
1639 0 : }
1640 0 : if( im->hasRegion("mask0") )
1641 : {
1642 0 : im->removeRegion("mask0");
1643 : }
1644 0 : }
1645 0 : catch (const AipsError& x)
1646 : {
1647 0 : throw(AipsError("Error in deleting internal T/F mask : " + x.getMesg() ));
1648 0 : }
1649 0 : }
1650 0 : void SIImageStore:: rescaleResolution(Int chan,
1651 : ImageInterface<Float>& image,
1652 : const GaussianBeam& newbeam,
1653 : const GaussianBeam& oldbeam){
1654 :
1655 0 : LogIO os( LogOrigin("SIImageStore","rescaleResolution",WHERE) );
1656 0 : GaussianBeam toBeUsed(Quantity(0.0, "arcsec"),Quantity(0.0, "arcsec"),
1657 0 : Quantity(0.0, "deg")) ;
1658 : try {
1659 0 : Bool samesize = GaussianDeconvolver::deconvolve(toBeUsed, newbeam, oldbeam);
1660 :
1661 : /*
1662 : os << LogIO::NORMAL2 << "Chan : " << chan << " : Input beam : : " << oldbeam.getMajor(Unit("arcsec")) << " arcsec, " << oldbeam.getMinor(Unit("arcsec"))<< " arcsec, " << oldbeam.getPA(Unit("deg")) << " deg" << LogIO::POST;
1663 : os << LogIO::NORMAL2 << "Target beam : " << newbeam.getMajor(Unit("arcsec")) << " arcsec, " << newbeam.getMinor(Unit("arcsec"))<< " arcsec, " << newbeam.getPA(Unit("deg")) << " deg" << LogIO::POST;
1664 : os << LogIO::NORMAL2 << "Beam to be used : " << toBeUsed.getMajor(Unit("arcsec")) << " arcsec, " << toBeUsed.getMinor(Unit("arcsec"))<< " arcsec, " << toBeUsed.getPA(Unit("deg")) << " deg" << LogIO::POST;
1665 : os << LogIO::NORMAL2 << "SameSize ? " << samesize << endl;
1666 : */
1667 :
1668 0 : if( samesize )
1669 : {
1670 0 : os << LogIO::NORMAL2 << "Input and output beam sizes are the same for Channel : " << chan << ". Not convolving residuals." << LogIO::POST;
1671 : }
1672 : else
1673 : {
1674 0 : Double pixwidth=sqrt(image.coordinates().increment()(0)*image.coordinates().increment()(0)+image.coordinates().increment()(1)*image.coordinates().increment()(1));
1675 :
1676 0 : if(toBeUsed.getMinor(image.coordinates().worldAxisUnits()[0]) > pixwidth)
1677 : {
1678 : //cerr << "old beam area " << oldbeam.getArea("rad2") << " new beam " << newbeam.getArea("rad2") << endl;
1679 0 : StokesImageUtil::Convolve(image, toBeUsed, True);
1680 0 : image.copyData(LatticeExpr<Float>(image*newbeam.getArea("rad2")/ oldbeam.getArea("rad2")));
1681 : }
1682 : }
1683 : }
1684 0 : catch (const AipsError& x) {
1685 : //throw(AipsError("Cannot convolve to new beam: may be smaller than old beam : " + x.getMesg() ));
1686 0 : os << LogIO::WARN << "Cannot convolve to new beam for Channel : " << chan << " : " << x.getMesg() << LogIO::POST;
1687 0 : }
1688 :
1689 :
1690 0 : }
1691 :
1692 0 : void SIImageStore::divideWeightBySumwt()
1693 : {
1694 0 : LogIO os(LogOrigin("SIImageStore", "divideWeightBySumWt", WHERE));
1695 :
1696 :
1697 0 : if( itsUseWeight )
1698 : {
1699 :
1700 0 : divideImageByWeightVal( *weight() );
1701 : }
1702 :
1703 0 : }
1704 :
1705 :
1706 0 : void SIImageStore::dividePSFByWeight(const Float /* pblimit*/)
1707 : {
1708 0 : LogIO os( LogOrigin("SIImageStore","dividePSFByWeight",WHERE) );
1709 :
1710 0 : LatticeLocker lock1 (*(psf()), FileLocker::Write);
1711 0 : normPSF();
1712 : //This bit us twice now...hiding this sensitivity division in psf division has wasted a few FTE days
1713 : // Leaving it commented so as it is a lesson of not what to do...
1714 : // moving it to its own function
1715 : // if( itsUseWeight )
1716 : // {
1717 :
1718 : //divideImageByWeightVal( *weight() );
1719 : // }
1720 0 : (psf())->unlock();
1721 :
1722 0 : }
1723 :
1724 0 : void SIImageStore::normalizePrimaryBeam(const Float pblimit)
1725 : {
1726 0 : LogIO os( LogOrigin("SIImageStore","normalizePrimaryBeam",WHERE) );
1727 :
1728 : // cout << "In dividePSFByWeight : itsUseWeight : " << itsUseWeight << endl;
1729 0 : if( itsUseWeight )
1730 : {
1731 :
1732 0 : for(Int pol=0; pol<itsImageShape[2]; pol++)
1733 : {
1734 0 : for(Int chan=0; chan<itsImageShape[3]; chan++)
1735 : {
1736 0 : os << LogIO::NORMAL1 << "Scale factor for [C" +String::toString(chan) + ":P" + String::toString(pol) + "] to keep the model image w.r.to a PB of max=1 is " << getPbMax(pol,chan) << LogIO::POST;
1737 : }//chan
1738 : }//pol
1739 :
1740 0 : makePBFromWeight(pblimit);
1741 :
1742 : }//if itsUseWeight
1743 0 : else { makePBImage(pblimit); } // OR... just check that it exists already.
1744 0 : pb()->unlock();
1745 :
1746 0 : }
1747 :
1748 : // Make another for the PSF too.
1749 0 : void SIImageStore::divideResidualByWeight(Float pblimit, String normtype) {
1750 :
1751 0 : LogIO os(LogOrigin("SIImageStore", "divideResidualByWeight", WHERE));
1752 0 : LatticeLocker lock1(*(residual()), FileLocker::Write);
1753 :
1754 0 : auto logTemplate = [&](Int const &chan, Int const &pol, string const &normalizer, string const &result) {
1755 0 : os << LogIO::NORMAL1
1756 0 : << "[C" + String::toString(chan) + ":P" + String::toString(pol) + "] "
1757 0 : << "Dividing " << itsImageName + String(".residual") << " by "
1758 : << "[ " << normalizer << " ] "
1759 0 : << "to get " << result << "." << LogIO::POST;
1760 0 : };
1761 :
1762 : // Normalize by the sumwt, per plane.
1763 0 : Bool didNorm = divideImageByWeightVal(*residual());
1764 :
1765 0 : if (itsUseWeight) {
1766 0 : for (Int pol = 0; pol < itsImageShape[2]; pol++) {
1767 0 : for (Int chan = 0; chan < itsImageShape[3]; chan++) {
1768 0 : itsPBScaleFactor = getPbMax(pol, chan);
1769 :
1770 0 : if (itsPBScaleFactor <= 0) {
1771 : os << LogIO::NORMAL1
1772 : << "Skipping normalization for C:" << chan << " P:" << pol
1773 0 : << " because pb max is zero " << LogIO::POST;
1774 :
1775 : } else {
1776 0 : CountedPtr<ImageInterface<Float> > wtsubim = makeSubImage(0, 1,
1777 0 : chan, itsImageShape[3],
1778 0 : pol, itsImageShape[2],
1779 0 : *weight());
1780 0 : CountedPtr<ImageInterface<Float> > ressubim = makeSubImage(0, 1,
1781 0 : chan, itsImageShape[3],
1782 0 : pol, itsImageShape[2],
1783 0 : *residual());
1784 0 : LatticeExpr<Float> ratio;
1785 0 : Float scalepb = 1.0;
1786 :
1787 0 : if (normtype == "flatnoise") {
1788 0 : logTemplate(chan, pol,
1789 0 : "sqrt(weightimage) * " + String::toString(itsPBScaleFactor),
1790 : "flat noise with unit pb peak");
1791 :
1792 0 : LatticeExpr<Float> deno = itsPBScaleFactor * sqrt(abs(LatticeExpr<Float>(*(wtsubim))));
1793 0 : scalepb = fabs(pblimit) * itsPBScaleFactor * itsPBScaleFactor;
1794 0 : ratio = iif(deno > scalepb, (*(ressubim) / deno), 0.0);
1795 :
1796 0 : } else if (normtype == "pbsquare") {
1797 0 : logTemplate(chan, pol,
1798 0 : String::toString(itsPBScaleFactor),
1799 : "optimal noise with unit pb peak");
1800 :
1801 0 : Float deno = itsPBScaleFactor * itsPBScaleFactor;
1802 0 : ratio = (*(ressubim) / deno);
1803 :
1804 0 : } else if (normtype == "flatsky") {
1805 0 : logTemplate(chan, pol, "weight", "flat sky");
1806 :
1807 0 : LatticeExpr<Float> deno = LatticeExpr<Float>(*(wtsubim));
1808 0 : scalepb = fabs(pblimit * pblimit) * itsPBScaleFactor * itsPBScaleFactor;
1809 0 : ratio = iif(deno > scalepb, (*(ressubim) / deno), 0.0);
1810 :
1811 0 : }
1812 :
1813 : //IPosition ip(4, itsImageShape[0] / 2, itsImageShape[1]/2, 0, 0);
1814 : //Float resval = ressubim->getAt(ip);
1815 : //LatticeExpr<Float> mask(iif((deno) > scalepb, 1.0, 0.0));
1816 : //LatticeExpr<Float> maskinv(iif((deno) > scalepb, 0.0, 1.0));
1817 : //LatticeExpr<Float> ratio(((*(ressubim)) * mask) / (deno + maskinv));
1818 :
1819 : //above blocks all sources outside minpb but visible with weight coverage
1820 : //which could be cleaned out...one could use below for that
1821 : //LatticeExpr<Float> ratio(iif(deno > scalepb, (*(ressubim)) / deno, *ressubim));
1822 :
1823 0 : ressubim->copyData(ratio);
1824 :
1825 : //cout << "Val of residual before|after normalizing at center for pol " << pol << " chan " << chan << " : " << resval << "|" << ressubim->getAt(ip) << " weight : " << wtsubim->getAt(ip) << endl;
1826 0 : } // if not zero
1827 : } //chan
1828 : } //pol
1829 : }
1830 :
1831 : // If no normalization happened, print a warning. The user must check if it's right or not.
1832 : // Or... later if we get a gridder that does pre-norms, this warning can go.
1833 0 : if ((didNorm | itsUseWeight) != True) {
1834 0 : os << LogIO::WARN << "No normalization done to residual" << LogIO::POST;
1835 : }
1836 :
1837 : ///// A T/F mask in the residual will confuse users looking at the interactive clean
1838 : ///// window
1839 0 : if ((residual()->getDefaultMask() == "") && hasPB() && pblimit >=0.0) {
1840 0 : copyMask(pb(), residual());
1841 : }
1842 :
1843 0 : if ((pblimit < 0.0) && (residual()->getDefaultMask()).matches("mask0")) {
1844 0 : removeMask(residual());
1845 : }
1846 :
1847 0 : residual()->unlock();
1848 0 : }
1849 :
1850 0 : void SIImageStore::divideResidualByWeightSD(Float pblimit) {
1851 :
1852 0 : LogIO os(LogOrigin("SIImageStore", "divideResidualByWeightSD", WHERE));
1853 0 : LatticeLocker lock1(*(residual()), FileLocker::Write);
1854 :
1855 0 : if (itsUseWeight) {
1856 0 : LatticeExpr<Float> deno = LatticeExpr<Float>(*weight());
1857 0 : LatticeExpr<Float> ratio = iif(deno > 0.0, *(residual()) / deno, 0.0);
1858 0 : residual()->copyData(ratio);
1859 0 : }
1860 : else {
1861 : // If no normalization happened, print a warning. The user must check if it's right or not.
1862 : // Or... later if we get a gridder that does pre-norms, this warning can go.
1863 0 : os << LogIO::WARN << "No normalization done to residual" << LogIO::POST;
1864 : }
1865 :
1866 : ///// A T/F mask in the residual will confuse users looking at the interactive clean
1867 : ///// window
1868 0 : if ((residual()->getDefaultMask() == "") && hasPB() && pblimit >=0.0) {
1869 0 : copyMask(pb(), residual());
1870 : }
1871 :
1872 0 : if ((pblimit < 0.0) && (residual()->getDefaultMask()).matches("mask0")) {
1873 0 : removeMask(residual());
1874 : }
1875 :
1876 0 : residual()->unlock();
1877 0 : }
1878 :
1879 0 : void SIImageStore::divideModelByWeight(Float pblimit, const String normtype)
1880 : {
1881 0 : LogIO os( LogOrigin("SIImageStore","divideModelByWeight",WHERE) );
1882 :
1883 :
1884 0 : if(itsUseWeight // only when needed
1885 0 : && weight() )// i.e. only when possible. For an initial starting model, don't need wt anyway.
1886 : {
1887 :
1888 0 : if( normtype=="flatsky") {
1889 :
1890 0 : LatticeExprNode LEN = max( *model());
1891 0 : os << LogIO::NORMAL1 << "Model is already flat sky with peak flux : " << LEN.getFloat();
1892 0 : os << ". No need to divide before prediction" << LogIO::POST;
1893 :
1894 0 : return;
1895 0 : }
1896 0 : else if( normtype=="flatnoise"){
1897 :
1898 0 : for(Int pol=0; pol<itsImageShape[2]; pol++)
1899 : {
1900 0 : for(Int chan=0; chan<itsImageShape[3]; chan++)
1901 : {
1902 :
1903 0 : itsPBScaleFactor = getPbMax(pol,chan);
1904 : // cout << " pbscale : " << itsPBScaleFactor << endl;
1905 0 : if(itsPBScaleFactor<=0){os << LogIO::NORMAL1 << "Skipping normalization for C:" << chan << " P:" << pol << " because pb max is zero " << LogIO::POST;}
1906 : else {
1907 :
1908 0 : CountedPtr<ImageInterface<Float> > wtsubim=makeSubImage(0,1,
1909 0 : chan, itsImageShape[3],
1910 0 : pol, itsImageShape[2],
1911 0 : *weight() );
1912 0 : CountedPtr<ImageInterface<Float> > modsubim=makeSubImage(0,1,
1913 0 : chan, itsImageShape[3],
1914 0 : pol, itsImageShape[2],
1915 0 : *model() );
1916 0 : os << LogIO::NORMAL1 ;
1917 0 : os << "[C" +String::toString(chan) + ":P" + String::toString(pol) + "] ";
1918 0 : os << "Dividing " << itsImageName+String(".model") ;
1919 0 : os << " by [ sqrt(weight) / " << itsPBScaleFactor ;
1920 0 : os <<" ] to get to flat sky model before prediction" << LogIO::POST;
1921 :
1922 :
1923 0 : LatticeExpr<Float> deno( sqrt( abs(*(wtsubim)) ) / itsPBScaleFactor );
1924 :
1925 0 : LatticeExpr<Float> mask( iif( (deno) > fabs(pblimit) , 1.0, 0.0 ) );
1926 0 : LatticeExpr<Float> maskinv( iif( (deno) > fabs(pblimit) , 0.0, 1.0 ) );
1927 0 : LatticeExpr<Float> ratio( ( (*(modsubim)) * mask ) / ( deno + maskinv ) );
1928 :
1929 : //
1930 : //The above has a problem...mask is cutting out clean components found
1931 : // outside pblimit ...use below if this is what is wanted
1932 : //LatticeExpr<Float> ratio(iif(sqrt(abs(*(wtsubim))) < (fabs(pblimit)*itsPBScaleFactor), 0.0, (*(modsubim))/(sqrt( abs(*(wtsubim))) / itsPBScaleFactor)));
1933 : // LatticeExpr<Float> ratio(iif((sqrt(abs(*(wtsubim))) ==0.0), 0.0, ((*(modsubim))*itsPBScaleFactor)/sqrt( abs(*(wtsubim))) ));
1934 :
1935 0 : IPosition ip(4,itsImageShape[0]/2,itsImageShape[1]/2,0,0);
1936 : /// Float modval = modsubim->getAt(ip);
1937 : //LatticeExprNode aminval( min(*modsubim) );
1938 : //LatticeExprNode amaxval( max(*modsubim) );
1939 : //cout << "Before ---- min : " << aminval.getFloat() << " max : " << amaxval.getFloat() << endl;
1940 :
1941 0 : modsubim->copyData(ratio);
1942 : // cout << "Val of model before|after flattening at center for pol " << pol << " chan " << chan << " : " << modval << "|" << modsubim->getAt(ip) << " weight : " << wtsubim->getAt(ip) << endl;
1943 : //LatticeExprNode minval( min(*modsubim) );
1944 : //LatticeExprNode maxval( max(*modsubim) );
1945 : //cout << "After ---- min : " << minval.getFloat() << " max : " << maxval.getFloat() << endl;
1946 0 : }// if not zero
1947 : }//chan
1948 : }//pol
1949 :
1950 : }
1951 0 : else if( normtype=="pbsquare"){
1952 :
1953 0 : for(Int pol=0; pol<itsImageShape[2]; pol++)
1954 : {
1955 0 : for(Int chan=0; chan<itsImageShape[3]; chan++)
1956 : {
1957 :
1958 0 : itsPBScaleFactor = getPbMax(pol,chan);
1959 : // cout << " pbscale : " << itsPBScaleFactor << endl;
1960 0 : if(itsPBScaleFactor<=0){os << LogIO::NORMAL1 << "Skipping normalization for C:" << chan << " P:" << pol << " because pb max is zero " << LogIO::POST;}
1961 : else {
1962 :
1963 0 : CountedPtr<ImageInterface<Float> > wtsubim=makeSubImage(0,1,
1964 0 : chan, itsImageShape[3],
1965 0 : pol, itsImageShape[2],
1966 0 : *weight() );
1967 0 : CountedPtr<ImageInterface<Float> > modsubim=makeSubImage(0,1,
1968 0 : chan, itsImageShape[3],
1969 0 : pol, itsImageShape[2],
1970 0 : *model() );
1971 0 : os << LogIO::NORMAL1 ;
1972 0 : os << "[C" +String::toString(chan) + ":P" + String::toString(pol) + "] ";
1973 0 : os << "Dividing " << itsImageName+String(".model") ;
1974 0 : os << " by [ (weight) / " << itsPBScaleFactor ;
1975 0 : os <<" ] to restore to optimal sky model before prediction" << LogIO::POST;
1976 :
1977 :
1978 0 : LatticeExpr<Float> deno( abs(*(wtsubim)) / (itsPBScaleFactor*itsPBScaleFactor) );
1979 :
1980 0 : LatticeExpr<Float> mask( iif( (deno) > fabs(pblimit) , 1.0, 0.0 ) );
1981 0 : LatticeExpr<Float> maskinv( iif( (deno) > fabs(pblimit) , 0.0, 1.0 ) );
1982 0 : LatticeExpr<Float> ratio( ( (*(modsubim)) * mask ) / ( deno + maskinv ) );
1983 :
1984 : //
1985 : //The above has a problem...mask is cutting out clean components found
1986 : // outside pblimit ...use below if this is what is wanted
1987 : // LatticeExpr<Float> ratio(iif(abs(*(wtsubim)) == 0.0, *modsubim, (*(modsubim))/( abs(*(wtsubim)) / (itsPBScaleFactor*itsPBScaleFactor))));
1988 :
1989 0 : IPosition ip(4,itsImageShape[0]/2,itsImageShape[1]/2,0,0);
1990 : /// Float modval = modsubim->getAt(ip);
1991 : //LatticeExprNode aminval( min(*modsubim) );
1992 : //LatticeExprNode amaxval( max(*modsubim) );
1993 : //cout << "Before ---- min : " << aminval.getFloat() << " max : " << amaxval.getFloat() << endl;
1994 :
1995 0 : modsubim->copyData(ratio);
1996 :
1997 : // cout << "Val of model before|after flattening at center for pol " << pol << " chan " << chan << " : " << modval << "|" << modsubim->getAt(ip) << " weight : " << wtsubim->getAt(ip) << endl;
1998 : //LatticeExprNode minval( min(*modsubim) );
1999 : //LatticeExprNode maxval( max(*modsubim) );
2000 : //cout << "After ---- min : " << minval.getFloat() << " max : " << maxval.getFloat() << endl;
2001 0 : }// if not zero
2002 : }//chan
2003 : }//pol
2004 :
2005 : }
2006 :
2007 : // storeImg(String("flatmodel.im"), *model());
2008 :
2009 : }
2010 0 : }
2011 :
2012 0 : void SIImageStore::multiplyModelByWeight(Float pblimit, const String normtype)
2013 : {
2014 0 : LogIO os( LogOrigin("SIImageStore","multiplyModelByWeight",WHERE) );
2015 :
2016 0 : if(itsUseWeight // only when needed
2017 0 : && weight() )// i.e. only when possible. For an initial starting model, don't need wt anyway.
2018 : {
2019 0 : if( normtype=="flatsky") {
2020 0 : os << "Model is already flat sky. No need to multiply back after prediction" << LogIO::POST;
2021 0 : return;
2022 : }
2023 0 : else if( normtype=="flatnoise"){
2024 :
2025 0 : for(Int pol=0; pol<itsImageShape[2]; pol++)
2026 : {
2027 0 : for(Int chan=0; chan<itsImageShape[3]; chan++)
2028 : {
2029 :
2030 0 : itsPBScaleFactor = getPbMax(pol,chan);
2031 : // cout << " pbscale : " << itsPBScaleFactor << endl;
2032 0 : if(itsPBScaleFactor<=0){os << LogIO::NORMAL1 << "Skipping normalization for C:" << chan << " P:" << pol << " because pb max is zero " << LogIO::POST;}
2033 : else {
2034 :
2035 0 : CountedPtr<ImageInterface<Float> > wtsubim=makeSubImage(0,1,
2036 0 : chan, itsImageShape[3],
2037 0 : pol, itsImageShape[2],
2038 0 : *weight() );
2039 0 : CountedPtr<ImageInterface<Float> > modsubim=makeSubImage(0,1,
2040 0 : chan, itsImageShape[3],
2041 0 : pol, itsImageShape[2],
2042 0 : *model() );
2043 :
2044 :
2045 :
2046 0 : os << LogIO::NORMAL1 ;
2047 0 : os << "[C" +String::toString(chan) + ":P" + String::toString(pol) + "] ";
2048 0 : os << "Multiplying " << itsImageName+String(".model") ;
2049 0 : os << " by [ sqrt(weight) / " << itsPBScaleFactor;
2050 0 : os << " ] to take model back to flat noise with unit pb peak." << LogIO::POST;
2051 :
2052 0 : LatticeExpr<Float> deno( sqrt( abs(*(wtsubim)) ) / itsPBScaleFactor );
2053 :
2054 0 : LatticeExpr<Float> mask( iif( (deno) > fabs(pblimit) , 1.0, 0.0 ) );
2055 0 : LatticeExpr<Float> maskinv( iif( (deno) > fabs(pblimit) , 0.0, 1.0 ) );
2056 0 : LatticeExpr<Float> ratio( ( (*(modsubim)) * mask ) * ( deno + maskinv ) );
2057 :
2058 : /////See comment in divmodel and divresidual for below usage
2059 : //LatticeExpr<Float> ratio ( (*(modsubim)) * sqrt( abs(*(wtsubim))) / itsPBScaleFactor );
2060 0 : modsubim->copyData(ratio);
2061 :
2062 0 : }// if not zero
2063 : }//chan
2064 : }//pol
2065 : }
2066 0 : else if( normtype=="pbsquare"){
2067 :
2068 0 : for(Int pol=0; pol<itsImageShape[2]; pol++)
2069 : {
2070 0 : for(Int chan=0; chan<itsImageShape[3]; chan++)
2071 : {
2072 :
2073 0 : itsPBScaleFactor = getPbMax(pol,chan);
2074 : // cout << " pbscale : " << itsPBScaleFactor << endl;
2075 0 : if(itsPBScaleFactor<=0){os << LogIO::NORMAL1 << "Skipping normalization for C:" << chan << " P:" << pol << " because pb max is zero " << LogIO::POST;}
2076 : else {
2077 :
2078 0 : CountedPtr<ImageInterface<Float> > wtsubim=makeSubImage(0,1,
2079 0 : chan, itsImageShape[3],
2080 0 : pol, itsImageShape[2],
2081 0 : *weight() );
2082 0 : CountedPtr<ImageInterface<Float> > modsubim=makeSubImage(0,1,
2083 0 : chan, itsImageShape[3],
2084 0 : pol, itsImageShape[2],
2085 0 : *model() );
2086 :
2087 :
2088 :
2089 0 : os << LogIO::NORMAL1 ;
2090 0 : os << "[C" +String::toString(chan) + ":P" + String::toString(pol) + "] ";
2091 0 : os << "Multiplying " << itsImageName+String(".model") ;
2092 0 : os << " by [ weight / " << itsPBScaleFactor*itsPBScaleFactor;
2093 0 : os << " ] to take model back to flat noise with unit pb peak." << LogIO::POST;
2094 :
2095 0 : LatticeExpr<Float> deno( abs(*(wtsubim)) / (itsPBScaleFactor*itsPBScaleFactor) );
2096 :
2097 0 : LatticeExpr<Float> mask( iif( (deno) > fabs(pblimit) , 1.0, 0.0 ) );
2098 0 : LatticeExpr<Float> maskinv( iif( (deno) > fabs(pblimit) , 0.0, 1.0 ) );
2099 0 : LatticeExpr<Float> ratio( ( (*(modsubim)) * mask ) * ( deno + maskinv ) );
2100 :
2101 : /////See comment in divmodel and divresidual for below usage
2102 : //LatticeExpr<Float> ratio ( (*(modsubim)) * sqrt( abs(*(wtsubim)) / itsPBScaleFactor) );
2103 0 : modsubim->copyData(ratio);
2104 0 : }// if not zero
2105 : }//chan
2106 : }//pol
2107 : }
2108 : }
2109 0 : }
2110 :
2111 0 : GaussianBeam SIImageStore::getPSFGaussian(Float psfcutoff)
2112 : {
2113 0 : GaussianBeam beam;
2114 : try
2115 : {
2116 0 : if( psf()->ndim() > 0 )
2117 : {
2118 0 : LatticeLocker lock2 (*(psf()), FileLocker::Read);
2119 0 : StokesImageUtil::FitGaussianPSF( *(psf()), beam, psfcutoff);
2120 0 : }
2121 : }
2122 0 : catch(AipsError &x)
2123 : {
2124 : // LogIO os( LogOrigin("SIImageStore","getPSFGaussian",WHERE) );
2125 : // os << "Error in fitting a Gaussian to the PSF : " << x.getMesg() << LogIO::POST;
2126 0 : throw( AipsError("Error in fitting a Gaussian to the PSF : " + x.getMesg()) );
2127 0 : }
2128 :
2129 0 : return beam;
2130 0 : }
2131 :
2132 0 : void SIImageStore::makeImageBeamSet(Float psfcutoff, const Bool forcefit)
2133 : {
2134 0 : clock_t begin = clock();
2135 :
2136 0 : LogIO os( LogOrigin("SIImageStore","getPSFGaussian",WHERE) );
2137 : // For all chans/pols, call getPSFGaussian() and put it into ImageBeamSet(chan,pol).
2138 0 : AlwaysAssert( itsImageShape.nelements() == 4, AipsError );
2139 0 : uInt nx = itsImageShape[0];
2140 0 : uInt ny = itsImageShape[1];
2141 0 : uInt npol = itsImageShape[2];
2142 0 : uInt nchan = itsImageShape[3];
2143 0 : ImageInfo ii = psf()->imageInfo();
2144 0 : ImageBeamSet iibeamset=ii.getBeamSet();
2145 0 : if(iibeamset.nchan()==nchan && iibeamset.nstokes()==npol && forcefit==False){
2146 0 : itsPSFBeams=iibeamset;
2147 0 : itsRestoredBeams=iibeamset;
2148 0 : return;
2149 : }
2150 0 : itsPSFBeams.resize( nchan, npol );
2151 0 : itsRestoredBeams.resize(nchan, npol);
2152 : // cout << "makeImBeamSet : imshape : " << itsImageShape << endl;
2153 :
2154 0 : String blankpsfs="";
2155 0 : for( uInt chanid=0; chanid<nchan;chanid++) {
2156 0 : for( uInt polid=0; polid<npol; polid++ ) {
2157 0 : LatticeLocker lock2 (*(psf()), FileLocker::Read);
2158 :
2159 0 : IPosition substart(4,0,0,polid,chanid);
2160 0 : IPosition substop(4,nx-1,ny-1,polid,chanid);
2161 0 : Slicer psfslice(substart, substop,Slicer::endIsLast);
2162 0 : SubImage<Float> subPsf( *psf() , psfslice, True );
2163 0 : GaussianBeam beam;
2164 :
2165 0 : Bool tryfit=True;
2166 :
2167 0 : LatticeExprNode le( max(subPsf) );
2168 0 : tryfit = le.getFloat()>0.0;
2169 0 : if(tryfit)
2170 : {
2171 : try
2172 : {
2173 0 : StokesImageUtil::FitGaussianPSF( subPsf, beam,psfcutoff );
2174 0 : itsPSFBeams.setBeam( chanid, polid, beam );
2175 0 : itsRestoredBeams.setBeam(chanid, polid, beam);
2176 : }
2177 0 : catch(AipsError &x)
2178 : {
2179 0 : os << LogIO::WARN << "[Chan" << chanid << ":Pol" << polid << "] Error Gaussian fit to PSF : " << x.getMesg() ;
2180 : // os << LogIO::POST;
2181 0 : os << " : Setting restoring beam to largest valid beam." << LogIO::POST;
2182 0 : }
2183 : }
2184 : else
2185 : {
2186 : // os << LogIO::WARN << "[Chan" << chanid << ":Pol" << polid << "] PSF is blank. Setting null restoring beam." << LogIO::POST ;
2187 0 : blankpsfs += "[C" +String::toString(chanid) + ":P" + String::toString(polid) + "] ";
2188 : }
2189 :
2190 0 : }// end of pol loop
2191 : }// end of chan loop
2192 :
2193 0 : if( blankpsfs.length() >0 )
2194 0 : os << LogIO::WARN << "PSF is blank for" << blankpsfs << LogIO::POST;
2195 :
2196 : //// Replace null (and bad) beams with the good one.
2197 : ////GaussianBeam maxbeam = findGoodBeam(True);
2198 :
2199 : //// Replace null beams by a tiny tiny beam, just to get past the ImageInfo restriction that
2200 : //// all planes must have non-null beams.
2201 :
2202 0 : GaussianBeam defaultbeam=itsPSFBeams.getMaxAreaBeam();
2203 : ///many of the unittests in tsdimaging seem to depend on having 0 area beams
2204 : ///which throws and exception when it is stored in the image
2205 : ///(so setting them to some small number)!
2206 0 : if(defaultbeam.getArea("rad2")==0.0){
2207 0 : Quantity majax(1e-06,"arcsec"),minax(1e-06,"arcsec"),pa(0.0,"deg");
2208 0 : defaultbeam.setMajorMinor(majax,minax);
2209 0 : defaultbeam.setPA(pa);
2210 0 : }
2211 0 : for( uInt chanid=0; chanid<nchan;chanid++) {
2212 0 : for( uInt polid=0; polid<npol; polid++ ) {
2213 0 : if( (itsPSFBeams.getBeam(chanid, polid)).isNull() )
2214 0 : { itsPSFBeams.setBeam( chanid, polid, defaultbeam );
2215 0 : itsRestoredBeams.setBeam( chanid, polid, defaultbeam );
2216 : }
2217 : }// end of pol loop
2218 : }// end of chan loop
2219 :
2220 : /*
2221 : //// Fill in gaps if there are any --- with the MAX Area beam.
2222 : ///// GaussianBeam maxbeam = itsPSFBeams.getMaxAreaBeam();
2223 : if( maxbeam.isNull() ) {
2224 : os << LogIO::WARN << "No planes have non-zero restoring beams. Forcing artificial 1.0arcsec beam." << LogIO::POST;
2225 : Quantity majax(1.0,"arcsec"),minax(1.0,"arcsec"),pa(0.0,"deg");
2226 : maxbeam.setMajorMinor(majax,minax);
2227 : maxbeam.setPA(pa);
2228 : }
2229 : else {
2230 : for( Int chanid=0; chanid<nchan;chanid++) {
2231 : for( Int polid=0; polid<npol; polid++ ) {
2232 : if( (itsPSFBeams.getBeam(chanid, polid)).isNull() )
2233 : { itsPSFBeams.setBeam( chanid, polid, maxbeam ); }
2234 : }// end of pol loop
2235 : }// end of chan loop
2236 : }
2237 : */
2238 :
2239 :
2240 : /// For lack of a better place, store this inside the PSF image. To be read later and used to restore
2241 :
2242 0 : ii.setBeams( itsPSFBeams );
2243 : {
2244 0 : LatticeLocker lock1(*(psf()), FileLocker::Write);
2245 0 : psf()->setImageInfo(ii);
2246 0 : psf()->unlock();
2247 0 : }
2248 0 : clock_t end = clock();
2249 0 : os << LogIO::NORMAL << "Time to fit Gaussian to PSF " << double(end - begin) / CLOCKS_PER_SEC << LogIO::POST;
2250 0 : }// end of make beam set
2251 :
2252 :
2253 0 : ImageBeamSet SIImageStore::getChannelBeamSet(const Int channel){
2254 :
2255 0 : return getChannelSliceBeamSet(channel, channel);
2256 : }
2257 :
2258 :
2259 0 : ImageBeamSet SIImageStore::getChannelSliceBeamSet(const Int begChan, const Int endChan){
2260 0 : ImageBeamSet bs=getBeamSet();
2261 0 : if(bs.shape()[0]==1)
2262 0 : return bs;
2263 0 : if(begChan > endChan || begChan <0)
2264 0 : throw(AipsError("Inconsistent slice of beam in channel requested"));
2265 0 : if(bs.shape()[0] < (endChan-1))
2266 0 : throw(AipsError("beam of channel "+String::toString(endChan)+" does not exist"));
2267 0 : IPosition blc(2, begChan, 0);
2268 0 : IPosition trc(2, endChan, bs.shape()[1]-1);
2269 0 : Matrix<GaussianBeam> sliceBeam=bs.getBeams()(blc, trc);
2270 0 : ImageBeamSet subBeamSet(sliceBeam);
2271 0 : return subBeamSet;
2272 :
2273 0 : }
2274 0 : void SIImageStore::setBeamSet(const ImageBeamSet& bs){
2275 :
2276 0 : itsPSFBeams=bs;
2277 0 : }
2278 :
2279 0 : ImageBeamSet SIImageStore::getBeamSet(Float psfcutoff)
2280 : {
2281 0 : IPosition beamshp = itsPSFBeams.shape();
2282 0 : AlwaysAssert( beamshp.nelements()==2 , AipsError );
2283 0 : if( beamshp[0]==0 || beamshp[1]==0 ) {makeImageBeamSet(psfcutoff);}
2284 0 : return itsPSFBeams;
2285 0 : }
2286 :
2287 0 : void SIImageStore::printBeamSet(Bool verbose)
2288 : {
2289 0 : LogIO os( LogOrigin("SIImageStore","printBeamSet",WHERE) );
2290 0 : AlwaysAssert( itsImageShape.nelements() == 4, AipsError );
2291 0 : if( itsImageShape[3] == 1 && itsImageShape[2]==1 )
2292 : {
2293 0 : GaussianBeam beam = itsPSFBeams.getBeam();
2294 0 : os << "Beam : " << beam.getMajor(Unit("arcsec")) << " arcsec, " << beam.getMinor(Unit("arcsec"))<< " arcsec, " << beam.getPA(Unit("deg")) << " deg" << LogIO::POST;
2295 0 : }
2296 : else
2297 : {
2298 : // per CAS-11415, verbose=True when restoringbeam='common'
2299 0 : if( verbose )
2300 : {
2301 0 : ostringstream oss;
2302 0 : oss<<"Beam";
2303 0 : Int nchan = itsImageShape[3];
2304 0 : for( Int chanid=0; chanid<nchan;chanid++) {
2305 0 : Int polid=0;
2306 : // for( Int polid=0; polid<npol; polid++ ) {
2307 0 : GaussianBeam beam = itsPSFBeams.getBeam( chanid, polid );
2308 0 : oss << " [C" << chanid << "]: " << beam.getMajor(Unit("arcsec")) << " arcsec, " << beam.getMinor(Unit("arcsec"))<< " arcsec, " << beam.getPA(Unit("deg")) << " deg";
2309 0 : }//for chanid
2310 0 : os << oss.str() << LogIO::POST;
2311 0 : }
2312 : else
2313 : {
2314 : // TODO : Enable this, when this function doesn't complain about 0 rest freq.
2315 : // or when rest freq is never zero !
2316 : try{
2317 0 : itsPSFBeams.summarize( os, False, itsCoordSys );
2318 : // per CAS-11415 request, not turn on this one (it prints out per-channel beam in each line in the logger)
2319 : //itsPSFBeams.summarize( os, verbose, itsCoordSys );
2320 : }
2321 0 : catch(AipsError &x)
2322 : {
2323 0 : os << LogIO::WARN << "Error while printing (compact) restoring beam summary : " << x.getMesg() << LogIO::POST;
2324 0 : os << "Printing long summary" << LogIO::POST;
2325 :
2326 0 : AlwaysAssert( itsImageShape.nelements() == 4, AipsError );
2327 : //Int npol = itsImageShape[2];
2328 0 : Int nchan = itsImageShape[3];
2329 0 : for( Int chanid=0; chanid<nchan;chanid++) {
2330 0 : Int polid=0;
2331 : // for( Int polid=0; polid<npol; polid++ ) {
2332 0 : GaussianBeam beam = itsPSFBeams.getBeam( chanid, polid );
2333 0 : os << "Beam [C" << chanid << "]: " << beam.getMajor(Unit("arcsec")) << " arcsec, " << beam.getMinor(Unit("arcsec"))<< " arcsec, " << beam.getPA(Unit("deg")) << " deg" << LogIO::POST;
2334 : //}//for polid
2335 0 : }//for chanid
2336 0 : }// catch
2337 : }
2338 : }
2339 0 : }
2340 :
2341 : /////////////////////////////// Restore all planes.
2342 :
2343 0 : void SIImageStore::restore(GaussianBeam& rbeam, String& usebeam, uInt term, Float psfcutoff)
2344 : {
2345 0 : LogIO os( LogOrigin("SIImageStore","restore",WHERE) );
2346 : // << ". Optionally, PB-correct too." << LogIO::POST;
2347 :
2348 0 : AlwaysAssert( itsImageShape.nelements() == 4, AipsError );
2349 0 : Int nx = itsImageShape[0];
2350 0 : Int ny = itsImageShape[1];
2351 0 : Int npol = itsImageShape[2];
2352 0 : Int nchan = itsImageShape[3];
2353 :
2354 : /* if( !hasResidualImage() )
2355 : {
2356 : // Cannot restore without residual/dirty image.
2357 : os << "Cannot restore without residual image" << LogIO::POST;
2358 : return;
2359 : }
2360 : */
2361 :
2362 : //// Get/fill the beamset
2363 0 : IPosition beamset = itsPSFBeams.shape();
2364 0 : AlwaysAssert( beamset.nelements()==2 , AipsError );
2365 0 : if( beamset[0] != nchan || beamset[1] != npol )
2366 : {
2367 :
2368 : // Get PSF Beams....
2369 0 : ImageInfo ii = psf()->imageInfo();
2370 0 : itsPSFBeams = ii.getBeamSet();
2371 0 : itsRestoredBeams=itsPSFBeams;
2372 0 : IPosition beamset2 = itsPSFBeams.shape();
2373 :
2374 0 : AlwaysAssert( beamset2.nelements()==2 , AipsError );
2375 0 : if( beamset2[0] != nchan || beamset2[1] != npol )
2376 : {
2377 : // Make new beams.
2378 0 : os << LogIO::WARN << "Couldn't find pre-computed restoring beams. Re-fitting." << LogIO::POST;
2379 0 : makeImageBeamSet(psfcutoff);
2380 : }
2381 0 : }
2382 :
2383 : // toggle for printing common beam to the log
2384 0 : Bool printcommonbeam(False);
2385 : //// Modify the beamset if needed
2386 : //// if ( rbeam is Null and usebeam=="" ) Don't do anything.
2387 : //// If rbeam is Null but usebeam=='common', calculate a common beam and set 'rbeam'
2388 : //// If rbeam is given (or exists due to 'common'), just use it.
2389 0 : if( rbeam.isNull() && usebeam=="common") {
2390 0 : os << "Getting common beam" << LogIO::POST;
2391 0 : rbeam = CasaImageBeamSet(itsPSFBeams).getCommonBeam();
2392 0 : os << "Common Beam : " << rbeam.getMajor(Unit("arcsec")) << " arcsec, " << rbeam.getMinor(Unit("arcsec"))<< " arcsec, " << rbeam.getPA(Unit("deg")) << " deg" << LogIO::POST;
2393 0 : printcommonbeam=True;
2394 : }
2395 0 : if( !rbeam.isNull() ) {
2396 : /*for( Int chanid=0; chanid<nchan;chanid++) {
2397 : for( Int polid=0; polid<npol; polid++ ) {
2398 : itsPSFBeams.setBeam( chanid, polid, rbeam );
2399 : /// Still need to add the 'common beam' option.
2400 : }//for chanid
2401 : }//for polid
2402 : */
2403 0 : itsRestoredBeams=ImageBeamSet(rbeam);
2404 0 : GaussianBeam beam = itsRestoredBeams.getBeam();
2405 :
2406 : //if commonbeam has not printed in the log
2407 0 : if (!printcommonbeam) {
2408 0 : os << "Common Beam : " << beam.getMajor(Unit("arcsec")) << " arcsec, " << beam.getMinor(Unit("arcsec"))<< " arcsec, " << beam.getPA(Unit("deg")) << " deg" << LogIO::POST;
2409 0 : printcommonbeam=True; // to avoid duplicate the info is printed to th elog
2410 : }
2411 0 : }// if rbeam not NULL
2412 : //// Done modifying beamset if needed
2413 :
2414 :
2415 : /// Before restoring, check for an empty model image and don't convolve (but still smooth residuals)
2416 : /// (for CAS-8271 : make output restored image even if .model is zero... )
2417 0 : Bool emptymodel = isModelEmpty();
2418 0 : if(emptymodel) os << LogIO::WARN << "Restoring with an empty model image. Only residuals will be processed to form the output restored image." << LogIO::POST;
2419 :
2420 :
2421 0 : LatticeLocker lock1(*(image(term)), FileLocker::Write);
2422 0 : LatticeLocker lock2(*(residual(term)), FileLocker::Write);
2423 0 : LatticeLocker lock3(*(model(term)), FileLocker::Read);
2424 : //// Use beamset to restore
2425 0 : for( Int chanid=0; chanid<nchan;chanid++) {
2426 0 : for( Int polid=0; polid<npol; polid++ ) {
2427 :
2428 0 : IPosition substart(4,0,0,polid,chanid);
2429 0 : IPosition substop(4,nx-1,ny-1,polid,chanid);
2430 0 : Slicer imslice(substart, substop,Slicer::endIsLast);
2431 0 : SubImage<Float> subRestored( *image(term) , imslice, True );
2432 0 : SubImage<Float> subModel( *model(term) , imslice, False );
2433 0 : SubImage<Float> subResidual( *residual(term) , imslice, True );
2434 :
2435 0 : GaussianBeam beam = itsRestoredBeams.getBeam( chanid, polid );;
2436 : //os << "Common Beam for chan : " << chanid << " : " << beam.getMajor(Unit("arcsec")) << " arcsec, " << beam.getMinor(Unit("arcsec"))<< " arcsec, " << beam.getPA(Unit("deg")) << " deg" << LogIO::POST;
2437 : // only print per-chan beam if the common beam is not used for restoring beam
2438 0 : if(!printcommonbeam) {
2439 0 : os << "Beam for chan : " << chanid << " : " << beam.getMajor(Unit("arcsec")) << " arcsec, " << beam.getMinor(Unit("arcsec"))<< " arcsec, " << beam.getPA(Unit("deg")) << " deg" << LogIO::POST;
2440 : }
2441 :
2442 : try
2443 : {
2444 : // Initialize restored image
2445 0 : subRestored.set(0.0);
2446 0 : if( !emptymodel ) {
2447 : // Copy model into it
2448 0 : subRestored.copyData( LatticeExpr<Float>( subModel ) );
2449 : // Smooth model by beam
2450 0 : StokesImageUtil::Convolve( subRestored, beam);
2451 : }
2452 : // Add residual image
2453 0 : if( !rbeam.isNull() || usebeam == "common") // If need to rescale residuals, make a copy and do it.
2454 : {
2455 : // rescaleResolution(chanid, subResidual, beam, itsPSFBeams.getBeam(chanid, polid));
2456 0 : TempImage<Float> tmpSubResidualCopy( IPosition(4,nx,ny,1,1), subResidual.coordinates());
2457 0 : tmpSubResidualCopy.copyData( subResidual );
2458 :
2459 0 : rescaleResolution(chanid, tmpSubResidualCopy, beam, itsPSFBeams.getBeam(chanid, polid));
2460 0 : subRestored.copyData( LatticeExpr<Float>( subRestored + tmpSubResidualCopy ) );
2461 0 : }
2462 : else// if no need to rescale residuals, just add the residuals.
2463 : {
2464 :
2465 :
2466 0 : subRestored.copyData( LatticeExpr<Float>( subRestored + subResidual ) );
2467 :
2468 : }
2469 :
2470 : }
2471 0 : catch(AipsError &x)
2472 : {
2473 0 : throw( AipsError("Restoration Error in chan" + String::toString(chanid) + ":pol" + String::toString(polid) + " : " + x.getMesg() ) );
2474 0 : }
2475 :
2476 0 : }// end of pol loop
2477 : }// end of chan loop
2478 :
2479 : try
2480 : {
2481 : //MSK//
2482 0 : if( hasPB() )
2483 : {
2484 0 : if( (image(term)->getDefaultMask()).matches("mask0") ) removeMask( image(term) );
2485 0 : copyMask(residual(term),image(term));
2486 : }
2487 :
2488 : // if(hasPB()){copyMask(residual(term),image(term));}
2489 0 : ImageInfo iminf = image(term)->imageInfo();
2490 : //iminf.setBeams( itsRestoredBeams);
2491 :
2492 0 : os << "Beam Set : Single beam : " << itsRestoredBeams.hasSingleBeam() << " Multi-beam : " << itsRestoredBeams.hasMultiBeam() << LogIO::DEBUG2;
2493 :
2494 0 : iminf.removeRestoringBeam();
2495 :
2496 0 : if( itsRestoredBeams.hasSingleBeam() )
2497 0 : { iminf.setRestoringBeam( itsRestoredBeams.getBeam() );}
2498 : else
2499 0 : {iminf.setBeams( itsRestoredBeams);}
2500 :
2501 0 : image(term)->setImageInfo(iminf);
2502 :
2503 0 : }
2504 0 : catch(AipsError &x)
2505 : {
2506 0 : throw( AipsError("Restoration Error : " + x.getMesg() ) );
2507 0 : }
2508 :
2509 0 : }// end of restore()
2510 :
2511 0 : GaussianBeam SIImageStore::findGoodBeam()
2512 : {
2513 0 : LogIO os( LogOrigin("SIImageStore","findGoodBeam",WHERE) );
2514 0 : IPosition beamshp = itsPSFBeams.shape();
2515 0 : AlwaysAssert( beamshp.nelements()==2 , AipsError );
2516 :
2517 : /*
2518 : if( beamshp[0] != nchan || beamshp[1] != npol )
2519 : {
2520 : // Make new beams.
2521 : os << LogIO::WARN << "Couldn't find pre-computed restoring beams. Re-fitting." << LogIO::POST;
2522 : makeImageBeamSet();
2523 : }
2524 : */
2525 :
2526 0 : Vector<Float> areas(beamshp[0]*beamshp[1]);
2527 0 : Vector<Float> axrat(beamshp[0]*beamshp[1]);
2528 0 : areas=0.0; axrat=1.0;
2529 0 : Vector<Bool> flags( areas.nelements() );
2530 0 : flags=False;
2531 :
2532 0 : Int cnt=0;
2533 0 : for( Int chanid=0; chanid<beamshp[0];chanid++) {
2534 0 : for( Int polid=0; polid<beamshp[1]; polid++ ) {
2535 0 : GaussianBeam beam = itsPSFBeams(chanid, polid);
2536 0 : if( !beam.isNull() && beam.getMajor(Unit("arcsec"))>1.1e-06 ) // larger than default filler beam.
2537 : {
2538 0 : areas[cnt] = beam.getArea( Unit("arcsec2") );
2539 0 : axrat[cnt] = beam.getMajor( Unit("arcsec") ) / beam.getMinor( Unit("arcsec") );
2540 : }
2541 : else {
2542 0 : flags[cnt] = True;
2543 : }
2544 0 : cnt++;
2545 0 : }//for chanid
2546 : }//for polid
2547 :
2548 0 : Vector<Float> fit( areas.nelements() );
2549 0 : Vector<Float> fitaxr( areas.nelements() );
2550 0 : for (Int loop=0;loop<5;loop++) {
2551 : /// Filter on outliers in PSF beam area
2552 0 : lineFit( areas, flags, fit, 0, areas.nelements()-1 );
2553 0 : Float sd = calcStd( areas , flags, fit );
2554 0 : for (uInt i=0;i<areas.nelements();i++) {
2555 0 : if( fabs( areas[i] - fit[i] ) > 3*sd ) flags[i]=True;
2556 : }
2557 : /// Filter on outliers in PSF axial ratio
2558 0 : lineFit( axrat, flags, fitaxr, 0, areas.nelements()-1 );
2559 0 : Float sdaxr = calcStd( axrat , flags, fitaxr );
2560 0 : for (uInt i=0;i<areas.nelements();i++) {
2561 0 : if( fabs( axrat[i] - fitaxr[i] ) > 3*sdaxr ) flags[i]=True;
2562 : }
2563 : }
2564 : // cout << "Original areas : " << areas << endl;
2565 : // cout << "Original axrats : " << axrat << endl;
2566 : // cout << "Flags : " << flags << endl;
2567 :
2568 : // Find max area good beam.
2569 0 : GaussianBeam goodbeam;
2570 0 : Int cid=0,pid=0;
2571 0 : Float maxval=0.0;
2572 0 : cnt=0;
2573 0 : for( Int chanid=0; chanid<beamshp[0];chanid++) {
2574 0 : for( Int polid=0; polid<beamshp[1]; polid++ ) {
2575 0 : if( flags[cnt] == False ){
2576 0 : if( areas[cnt] > maxval ) {maxval = areas[cnt]; goodbeam = itsPSFBeams.getBeam(chanid,polid);cid=chanid;pid=polid;}
2577 : }
2578 0 : cnt++;
2579 : }//polid
2580 : }//chanid
2581 :
2582 0 : os << "Picking common beam from C"<<cid<<":P"<<pid<<" : " << goodbeam.getMajor(Unit("arcsec")) << " arcsec, " << goodbeam.getMinor(Unit("arcsec"))<< " arcsec, " << goodbeam.getPA(Unit("deg")) << " deg" << LogIO::POST;
2583 :
2584 0 : Bool badbeam=False;
2585 0 : for(uInt i=0;i<flags.nelements();i++){if(flags[i]==True) badbeam=True;}
2586 :
2587 0 : if( badbeam == True )
2588 : {
2589 0 : os << "(Ignored beams from :";
2590 0 : cnt=0;
2591 0 : for( Int chanid=0; chanid<beamshp[0];chanid++) {
2592 0 : for( Int polid=0; polid<beamshp[1]; polid++ ) {
2593 0 : if( flags[cnt] == True ){
2594 0 : os << " C"<<chanid<<":P"<<polid;
2595 : }
2596 0 : cnt++;
2597 : }//polid
2598 : }//chanid
2599 0 : os << " as outliers either by area or by axial ratio)" << LogIO::POST;
2600 : }
2601 :
2602 :
2603 : /*
2604 : // Replace 'bad' psfs with the chosen one.
2605 : if( goodbeam.isNull() ) {
2606 : os << LogIO::WARN << "No planes have non-zero restoring beams. Forcing artificial 1.0arcsec beam." << LogIO::POST;
2607 : Quantity majax(1.0,"arcsec"),minax(1.0,"arcsec"),pa(0.0,"deg");
2608 : goodbeam.setMajorMinor(majax,minax);
2609 : goodbeam.setPA(pa);
2610 : }
2611 : else {
2612 : cnt=0;
2613 : for( Int chanid=0; chanid<nchan;chanid++) {
2614 : for( Int polid=0; polid<npol; polid++ ) {
2615 : if( flags[cnt]==True )
2616 : { itsPSFBeams.setBeam( chanid, polid, goodbeam ); }
2617 : cnt++;
2618 : }// end of pol loop
2619 : }// end of chan loop
2620 : }
2621 : */
2622 :
2623 0 : return goodbeam;
2624 0 : }// end of findGoodBeam
2625 :
2626 : ///////////////////////// Funcs to calculate robust mean and fit, taking into account 'flagged' points.
2627 0 : void SIImageStore :: lineFit(Vector<Float> &data, Vector<Bool> &flag, Vector<Float> &fit, uInt lim1, uInt lim2)
2628 : {
2629 0 : float Sx = 0, Sy = 0, Sxx = 0, Sxy = 0, S = 0, a, b, sd, mn;
2630 :
2631 0 : mn = calcMean(data, flag);
2632 0 : sd = calcStd (data, flag, mn);
2633 :
2634 0 : for (uInt i = lim1; i <= lim2; i++)
2635 : {
2636 0 : if (flag[i] == False) // if unflagged
2637 : {
2638 0 : S += 1 / (sd * sd);
2639 0 : Sx += i / (sd * sd);
2640 0 : Sy += data[i] / (sd * sd);
2641 0 : Sxx += (i * i) / (sd * sd);
2642 0 : Sxy += (i * data[i]) / (sd * sd);
2643 : }
2644 : }
2645 0 : a = (Sxx * Sy - Sx * Sxy) / (S * Sxx - Sx * Sx);
2646 0 : b = (S * Sxy - Sx * Sy) / (S * Sxx - Sx * Sx);
2647 :
2648 0 : for (uInt i = lim1; i <= lim2; i++)
2649 0 : fit[i] = a + b * i;
2650 :
2651 0 : }
2652 : /* Calculate the MEAN of 'vect' ignoring values flagged in 'flag' */
2653 0 : Float SIImageStore :: calcMean(Vector<Float> &vect, Vector<Bool> &flag)
2654 : {
2655 0 : Float mean=0;
2656 0 : Int cnt=0;
2657 0 : for(uInt i=0;i<vect.nelements();i++)
2658 0 : if(flag[i]==False)
2659 : {
2660 0 : mean += vect[i];
2661 0 : cnt++;
2662 : }
2663 0 : if(cnt==0) cnt=1;
2664 0 : return mean/cnt;
2665 : }
2666 0 : Float SIImageStore :: calcStd(Vector<Float> &vect, Vector<Bool> &flag, Vector<Float> &fit)
2667 : {
2668 0 : Float std=0;
2669 0 : uInt n=0,cnt=0;
2670 0 : n = vect.nelements() < fit.nelements() ? vect.nelements() : fit.nelements();
2671 0 : for(uInt i=0;i<n;i++)
2672 0 : if(flag[i]==False)
2673 : {
2674 0 : cnt++;
2675 0 : std += (vect[i]-fit[i])*(vect[i]-fit[i]);
2676 : }
2677 0 : if(cnt==0) cnt=1;
2678 0 : return sqrt(std/cnt);
2679 :
2680 : }
2681 0 : Float SIImageStore :: calcStd(Vector<Float> &vect, Vector<Bool> &flag, Float mean)
2682 : {
2683 0 : Float std=0;
2684 0 : uInt cnt=0;
2685 0 : for(uInt i=0;i<vect.nelements();i++)
2686 0 : if(flag[i]==False)
2687 : {
2688 0 : cnt++;
2689 0 : std += (vect[i]-mean)*(vect[i]-mean);
2690 : }
2691 0 : return sqrt(std/cnt);
2692 : }
2693 :
2694 : ///////////////////////// End of Funcs to calculate robust mean and fit.
2695 :
2696 :
2697 :
2698 : /*
2699 : GaussianBeam SIImageStore::restorePlane()
2700 : {
2701 :
2702 : LogIO os( LogOrigin("SIImageStore","restorePlane",WHERE) );
2703 : // << ". Optionally, PB-correct too." << LogIO::POST;
2704 :
2705 : Bool validbeam=False;
2706 : GaussianBeam beam;
2707 : try
2708 : {
2709 : // Fit a Gaussian to the PSF.
2710 : beam = getPSFGaussian();
2711 : validbeam = True;
2712 : }
2713 : catch(AipsError &x)
2714 : {
2715 : os << LogIO::WARN << "Beam fit error : " + x.getMesg() << LogIO::POST;
2716 : }
2717 :
2718 : try
2719 : {
2720 : if( validbeam==True )
2721 : {
2722 : //os << "[" << itsImageName << "] " ; // Add when parent image name is available.
2723 : //os << "Restore with beam : " << beam.getMajor(Unit("arcmin")) << " arcmin, " << beam.getMinor(Unit("arcmin"))<< " arcmin, " << beam.getPA(Unit("deg")) << " deg" << LogIO::POST;
2724 :
2725 : // Initialize restored image
2726 : image()->set(0.0);
2727 : // Copy model into it
2728 : image()->copyData( LatticeExpr<Float>( *(model()) ) );
2729 : // Smooth model by beam
2730 : StokesImageUtil::Convolve( *(image()), beam);
2731 : // Add residual image
2732 : image()->copyData( LatticeExpr<Float>( *(image()) + *(residual()) ) );
2733 :
2734 : // Set restoring beam into the image
2735 : ImageInfo ii = image()->imageInfo();
2736 : //ii.setRestoringBeam(beam);
2737 : ii.setBeams(beam);
2738 : image()->setImageInfo(ii);
2739 : }
2740 : }
2741 : catch(AipsError &x)
2742 : {
2743 : throw( AipsError("Restoration Error : " + x.getMesg() ) );
2744 : }
2745 :
2746 : return beam;
2747 :
2748 : }
2749 : */
2750 :
2751 0 : void SIImageStore::pbcor(uInt term)
2752 : {
2753 :
2754 0 : LogIO os( LogOrigin("SIImageStore","pbcor",WHERE) );
2755 :
2756 0 : if( !hasRestored() || !hasPB() )
2757 : {
2758 : // Cannot pbcor without restored image and pb
2759 0 : os << LogIO::WARN << "Cannot pbcor without restored image and pb" << LogIO::POST;
2760 0 : return;
2761 : }
2762 0 : LatticeLocker lock1(*(image(term)), FileLocker::Write);
2763 0 : LatticeLocker lock2(*(pb(term)), FileLocker::Write);
2764 0 : LatticeLocker lock3(*(imagepbcor(term)), FileLocker::Write);
2765 :
2766 0 : for(Int pol=0; pol<itsImageShape[2]; pol++)
2767 : {
2768 0 : for(Int chan=0; chan<itsImageShape[3]; chan++)
2769 : {
2770 :
2771 0 : CountedPtr<ImageInterface<Float> > restoredsubim=makeSubImage(0,1,
2772 0 : chan, itsImageShape[3],
2773 0 : pol, itsImageShape[2],
2774 0 : *image(term) );
2775 0 : CountedPtr<ImageInterface<Float> > pbsubim=makeSubImage(0,1,
2776 0 : chan, itsImageShape[3],
2777 0 : pol, itsImageShape[2],
2778 0 : *pb() );
2779 :
2780 0 : CountedPtr<ImageInterface<Float> > pbcorsubim=makeSubImage(0,1,
2781 0 : chan, itsImageShape[3],
2782 0 : pol, itsImageShape[2],
2783 0 : *imagepbcor(term) );
2784 :
2785 :
2786 0 : LatticeExprNode pbmax( max( *pbsubim ) );
2787 0 : Float pbmaxval = pbmax.getFloat();
2788 :
2789 0 : if( pbmaxval<=0.0 )
2790 : {
2791 0 : os << LogIO::WARN << "Skipping PBCOR for C:" << chan << " P:" << pol << " because pb max is zero " << LogIO::POST;
2792 0 : pbcorsubim->set(0.0);
2793 : }
2794 : else
2795 : {
2796 :
2797 0 : LatticeExpr<Float> thepbcor( iif( *(pbsubim) > 0.0 , (*(restoredsubim))/(*(pbsubim)) , 0.0 ) );
2798 0 : pbcorsubim->copyData( thepbcor );
2799 :
2800 0 : }// if not zero
2801 0 : }//chan
2802 : }//pol
2803 :
2804 : // Copy over the PB mask.
2805 0 : if((imagepbcor(term)->getDefaultMask()=="") && hasPB())
2806 0 : {copyMask(pb(),imagepbcor(term));}
2807 :
2808 : // Set restoring beam info
2809 0 : ImageInfo iminf = image(term)->imageInfo();
2810 : //iminf.setBeams( itsRestoredBeams );
2811 0 : imagepbcor(term)->setImageInfo(iminf);
2812 :
2813 0 : }// end pbcor
2814 :
2815 0 : Matrix<Float> SIImageStore::getSumWt(ImageInterface<Float>& target)
2816 : {
2817 0 : Record miscinfo = target.miscInfo();
2818 :
2819 0 : Matrix<Float> sumwt;
2820 0 : sumwt.resize();
2821 0 : if( miscinfo.isDefined("sumwt")
2822 0 : && (miscinfo.dataType("sumwt")==TpArrayFloat || miscinfo.dataType("sumwt")==TpArrayDouble ) )
2823 0 : { miscinfo.get( "sumwt" , sumwt ); }
2824 0 : else { sumwt.resize( IPosition(2, target.shape()[2], target.shape()[3] ) ); sumwt = 1.0; }
2825 :
2826 0 : return sumwt;
2827 0 : }
2828 :
2829 0 : void SIImageStore::setSumWt(ImageInterface<Float>& target, Matrix<Float>& sumwt)
2830 : {
2831 0 : Record miscinfo = target.miscInfo();
2832 0 : miscinfo.define("sumwt", sumwt);
2833 0 : LatticeLocker lock1(target, FileLocker::Write);
2834 0 : target.setMiscInfo( miscinfo );
2835 0 : }
2836 :
2837 :
2838 0 : Bool SIImageStore::getUseWeightImage(ImageInterface<Float>& target)
2839 : {
2840 0 : Record miscinfo = target.miscInfo();
2841 : Bool useweightimage;
2842 0 : if( miscinfo.isDefined("useweightimage") && miscinfo.dataType("useweightimage")==TpBool )
2843 0 : { miscinfo.get( "useweightimage", useweightimage ); }
2844 0 : else { useweightimage = False; }
2845 :
2846 0 : return useweightimage;
2847 0 : }
2848 : /*
2849 : Bool SIImageStore::getUseWeightImage()
2850 : {
2851 : if( ! itsParentSumWt )
2852 : return False;
2853 : else
2854 : return getUseWeightImage( *itsParentSumWt );
2855 : }
2856 : */
2857 0 : void SIImageStore::setUseWeightImage(ImageInterface<Float>& target, Bool useweightimage)
2858 : {
2859 0 : Record miscinfo = target.miscInfo();
2860 0 : miscinfo.define("useweightimage", useweightimage);
2861 0 : LatticeLocker lock1(target, FileLocker::Write);
2862 0 : target.setMiscInfo( miscinfo );
2863 0 : }
2864 :
2865 :
2866 :
2867 0 : Bool SIImageStore::divideImageByWeightVal( ImageInterface<Float>& target )
2868 : {
2869 :
2870 0 : Array<Float> lsumwt;
2871 0 : sumwt()->get( lsumwt , False ); // For MT, this will always pick the zeroth sumwt, which it should.
2872 0 : LatticeLocker lock2(target, FileLocker::Write);
2873 :
2874 0 : IPosition imshape = target.shape();
2875 :
2876 : //cerr << " SumWt : " << lsumwt << " sumwtshape : " << lsumwt.shape() << " image shape : " << imshape << endl;
2877 :
2878 0 : AlwaysAssert( lsumwt.shape()[2] == imshape[2] , AipsError ); // polplanes
2879 0 : AlwaysAssert( lsumwt.shape()[3] == imshape[3] , AipsError ); // chanplanes
2880 :
2881 0 : Bool div=False; // flag to signal if division actually happened, or weights are all 1.0
2882 :
2883 0 : for(Int pol=0; pol<lsumwt.shape()[2]; pol++)
2884 : {
2885 0 : for(Int chan=0; chan<lsumwt.shape()[3]; chan++)
2886 : {
2887 0 : IPosition pos(4,0,0,pol,chan);
2888 0 : if( lsumwt(pos) != 1.0 )
2889 : {
2890 : // SubImage<Float>* subim=makePlane( chan, True ,pol, True, target );
2891 : std::shared_ptr<ImageInterface<Float> > subim=makeSubImage(0,1,
2892 0 : chan, lsumwt.shape()[3],
2893 0 : pol, lsumwt.shape()[2],
2894 0 : target );
2895 0 : if ( lsumwt(pos) > 1e-07 ) {
2896 0 : LatticeExpr<Float> le( (*subim)/lsumwt(pos) );
2897 0 : subim->copyData( le );
2898 0 : }
2899 : else {
2900 0 : subim->set(0.0);
2901 : }
2902 0 : div=True;
2903 0 : }
2904 0 : }
2905 : }
2906 :
2907 : // if( div==True ) cout << "Div image by sumwt : " << lsumwt << endl;
2908 : // else cout << "Already normalized" << endl;
2909 :
2910 : // lsumwt = 1.0; setSumWt( target , lsumwt );
2911 :
2912 0 : return div;
2913 0 : }
2914 :
2915 0 : void SIImageStore::normPSF(Int term)
2916 : {
2917 :
2918 0 : for(Int pol=0; pol<itsImageShape[2]; pol++)
2919 : {
2920 0 : for(Int chan=0; chan<itsImageShape[3]; chan++)
2921 : {
2922 : /// IPosition center(4,itsImageShape[0]/2,itsImageShape[1]/2,pol,chan);
2923 :
2924 : std::shared_ptr<ImageInterface<Float> > subim=makeSubImage(0,1,
2925 0 : chan, itsImageShape[3],
2926 0 : pol, itsImageShape[2],
2927 0 : (*psf(term)) );
2928 :
2929 : std::shared_ptr<ImageInterface<Float> > subim0=makeSubImage(0,1,
2930 0 : chan, itsImageShape[3],
2931 0 : pol, itsImageShape[2],
2932 0 : (*psf(0)) );
2933 :
2934 0 : LatticeLocker lock1(*(subim), FileLocker::Write);
2935 :
2936 0 : LatticeExprNode themax( max(*(subim0)) );
2937 0 : Float maxim = themax.getFloat();
2938 :
2939 0 : if ( maxim > 1e-07 )
2940 : {
2941 0 : LatticeExpr<Float> normed( (*(subim)) / maxim );
2942 0 : subim->copyData( normed );
2943 0 : }
2944 : else
2945 : {
2946 0 : subim->set(0.0);
2947 : }
2948 0 : }//chan
2949 : }//pol
2950 :
2951 0 : }
2952 :
2953 0 : void SIImageStore::calcSensitivity()
2954 : {
2955 0 : LogIO os( LogOrigin("SIImageStore","calcSensitivity",WHERE) );
2956 :
2957 0 : Array<Float> lsumwt;
2958 0 : sumwt()->get( lsumwt , False ); // For MT, this will always pick the zeroth sumwt, which it should.
2959 :
2960 0 : IPosition shp( lsumwt.shape() );
2961 : //cout << "Sumwt shape : " << shp << " : " << lsumwt << endl;
2962 : //AlwaysAssert( shp.nelements()==4 , AipsError );
2963 :
2964 0 : os << "[" << itsImageName << "] Theoretical sensitivity (Jy/bm):" ;
2965 :
2966 0 : IPosition it(4,0,0,0,0);
2967 0 : for ( it[0]=0; it[0]<shp[0]; it[0]++)
2968 0 : for ( it[1]=0; it[1]<shp[1]; it[1]++)
2969 0 : for ( it[2]=0; it[2]<shp[2]; it[2]++)
2970 0 : for ( it[3]=0; it[3]<shp[3]; it[3]++)
2971 : {
2972 0 : if( shp[0]>1 ){os << "f"<< it[0]+(it[1]*shp[0]) << ":" ;}
2973 0 : if( shp[3]>1 ) { os << "c"<< it[3] << ":"; }
2974 0 : if( shp[2]>1 ) { os << "p"<< it[2]<< ":" ; }
2975 0 : if( lsumwt( it ) > 1e-07 )
2976 : {
2977 0 : os << 1.0/(sqrt(lsumwt(it))) << " " ;
2978 : }
2979 : else
2980 : {
2981 0 : os << "none" << " ";
2982 : }
2983 : }
2984 :
2985 0 : os << LogIO::POST;
2986 :
2987 : // Array<Float> sens = 1.0/sqrtsumwt;
2988 :
2989 :
2990 0 : }
2991 :
2992 0 : Double SIImageStore::calcFractionalBandwidth()
2993 : {
2994 0 : throw(AipsError("calcFractionalBandwidth is not implemented for SIImageStore. Only SIImageStoreMultiTerm"));
2995 : }
2996 :
2997 : //////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
2998 : //////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
2999 : //////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
3000 : /////////////////// Utility Functions to gather statistics on the imagestore.
3001 :
3002 0 : Float SIImageStore::getPeakResidual()
3003 : {
3004 0 : LogIO os( LogOrigin("SIImageStore","getPeakResidual",WHERE) );
3005 0 : LatticeLocker lock2 (*(residual()), FileLocker::Read);
3006 0 : ArrayLattice<Bool> pixelmask(residual()->getMask());
3007 0 : LatticeExpr<Float> resd(iif(pixelmask,abs(*residual()),0));
3008 : //LatticeExprNode pres( max(abs( *residual() ) ));
3009 0 : LatticeExprNode pres( max(resd) );
3010 0 : Float maxresidual = pres.getFloat();
3011 :
3012 0 : return maxresidual;
3013 0 : }
3014 :
3015 0 : Float SIImageStore::getPeakResidualWithinMask()
3016 : {
3017 0 : LogIO os( LogOrigin("SIImageStore","getPeakResidualWithinMask",WHERE) );
3018 : //Float minresmask, maxresmask, minres, maxres;
3019 : //findMinMax( residual()->get(), mask()->get(), minres, maxres, minresmask, maxresmask );
3020 :
3021 0 : ArrayLattice<Bool> pixelmask(residual()->getMask());
3022 : //findMinMaxLattice(*residual(), *mask() , pixelmask, maxres,maxresmask, minres, minresmask);
3023 0 : LatticeExpr<Float> resd(iif(((*mask()) > 0) && pixelmask ,abs((*residual())),0));
3024 0 : LatticeExprNode pres( max(resd) );
3025 0 : Float maxresidual = pres.getFloat();
3026 : //Float maxresidual=max( abs(maxresmask), abs(minresmask) );
3027 0 : return maxresidual;
3028 0 : }
3029 :
3030 : // Calculate the total model flux
3031 0 : Float SIImageStore::getModelFlux(uInt term)
3032 : {
3033 : // LogIO os( LogOrigin("SIImageStore","getModelFlux",WHERE) );
3034 0 : LatticeLocker lock2 (*(model(term)), FileLocker::Read);
3035 0 : LatticeExprNode mflux( sum( *model(term) ) );
3036 0 : Float modelflux = mflux.getFloat();
3037 : // Float modelflux = sum( model(term)->get() );
3038 :
3039 0 : return modelflux;
3040 0 : }
3041 :
3042 : // Check for non-zero model (this is different from getting model flux, for derived SIIMMT)
3043 0 : Bool SIImageStore::isModelEmpty()
3044 : {
3045 0 : if( !itsModel && (! hasModel()) ) return True;
3046 0 : else return ( fabs( getModelFlux(0) ) < 1e-08 );
3047 : }
3048 :
3049 :
3050 0 : void SIImageStore::setPSFSidelobeLevel(const Float level){
3051 :
3052 0 : itsPSFSideLobeLevel=level;
3053 0 : }
3054 : // Calculate the PSF sidelobe level...
3055 0 : Float SIImageStore::getPSFSidelobeLevel()
3056 : {
3057 0 : LogIO os( LogOrigin("SIImageStore","getPSFSidelobeLevel",WHERE) );
3058 : //cerr << "*****PSF sidelobe "<< itsPSFSideLobeLevel << endl;
3059 : /// Calculate only once, store and return for all subsequent calls.
3060 0 : if( itsPSFSideLobeLevel == 0.0 )
3061 : {
3062 :
3063 0 : ImageBeamSet thebeams = getBeamSet();
3064 0 : LatticeLocker lock2 (*(psf()), FileLocker::Read);
3065 :
3066 : //------------------------------------------------------------
3067 0 : IPosition oneplaneshape( itsImageShape );
3068 0 : AlwaysAssert( oneplaneshape.nelements()==4, AipsError );
3069 0 : oneplaneshape[2]=1; oneplaneshape[3]=1;
3070 0 : TempImage<Float> psfbeam( oneplaneshape, itsCoordSys );
3071 :
3072 : // In a loop through channels, subtract out or mask out the main lobe
3073 0 : Float allmin=0.0, allmax=0.0;
3074 0 : for(Int pol=0; pol<itsImageShape[2]; pol++)
3075 : {
3076 0 : for(Int chan=0; chan<itsImageShape[3]; chan++)
3077 : {
3078 : std::shared_ptr<ImageInterface<Float> > onepsf=makeSubImage(0,1,
3079 0 : chan, itsImageShape[3],
3080 0 : pol, itsImageShape[2],
3081 0 : (*psf()) );
3082 :
3083 :
3084 0 : GaussianBeam beam = thebeams.getBeam( chan, pol );
3085 0 : Vector<Float> abeam(3); // Holds bmaj, bmin, pa in asec, asec, deg
3086 0 : abeam[0] = beam.getMajor().get("arcsec").getValue() * C::arcsec;
3087 0 : abeam[1] = beam.getMinor().get("arcsec").getValue() * C::arcsec;
3088 0 : abeam[2] = (beam.getPA().get("deg").getValue() + 90.0)* C::degree;
3089 :
3090 : //cout << "Beam : " << abeam << endl;
3091 :
3092 0 : StokesImageUtil::MakeGaussianPSF( psfbeam, abeam, False);
3093 :
3094 : // storeImg( String("psfbeam.im"), psfbeam );
3095 :
3096 : //Subtract from PSF plane
3097 0 : LatticeExpr<Float> delobed( (*onepsf) - psfbeam );
3098 :
3099 : // For debugging
3100 : //onepsf->copyData( delobed );
3101 :
3102 : //Calc max and min and accumulate across channels.
3103 :
3104 0 : LatticeExprNode minval_le( min( *onepsf ) );
3105 0 : LatticeExprNode maxval_le( max( delobed ) );
3106 :
3107 0 : Float minval = minval_le.getFloat();
3108 0 : Float maxval = maxval_le.getFloat();
3109 :
3110 0 : if( minval < allmin ) allmin = minval;
3111 0 : if( maxval > allmax ) allmax = maxval;
3112 :
3113 : //cout << "Chan : " << chan << " minval : " << minval << " maxval : " << maxval << endl;
3114 :
3115 0 : }//chan
3116 : }//pol
3117 :
3118 : //------------------------------------------------------------
3119 :
3120 0 : itsPSFSideLobeLevel = max( fabs(allmin), fabs(allmax) );
3121 :
3122 : //os << "PSF min : " << allmin << " max : " << allmax << " psfsidelobelevel : " << itsPSFSideLobeLevel << LogIO::POST;
3123 :
3124 0 : }// if changed.
3125 :
3126 : // LatticeExprNode psfside( min( *psf() ) );
3127 : // itsPSFSideLobeLevel = fabs( psfside.getFloat() );
3128 :
3129 : //cout << "PSF sidelobe level : " << itsPSFSideLobeLevel << endl;
3130 0 : return itsPSFSideLobeLevel;
3131 0 : }
3132 :
3133 0 : void SIImageStore::findMinMax(const Array<Float>& lattice,
3134 : const Array<Float>& mask,
3135 : Float& minVal, Float& maxVal,
3136 : Float& minValMask, Float& maxValMask)
3137 : {
3138 0 : IPosition posmin(lattice.shape().nelements(), 0);
3139 0 : IPosition posmax(lattice.shape().nelements(), 0);
3140 :
3141 0 : if( sum(mask) <1e-06 ) {minValMask=0.0; maxValMask=0.0;}
3142 0 : else { minMaxMasked(minValMask, maxValMask, posmin, posmax, lattice,mask); }
3143 :
3144 0 : minMax( minVal, maxVal, posmin, posmax, lattice );
3145 0 : }
3146 :
3147 0 : Array<Double> SIImageStore::calcRobustRMS(Array<Double>& mdns, const Float pbmasklevel, const Bool fastcalc)
3148 : {
3149 0 : LogIO os( LogOrigin("SIImageStore","calcRobustRMS",WHERE) );
3150 0 : Record* regionPtr=0;
3151 0 : String LELmask("");
3152 0 : LatticeLocker lockres (*(residual()), FileLocker::Read);
3153 0 : ArrayLattice<Bool> pbmasklat(residual()->shape());
3154 0 : pbmasklat.set(False);
3155 0 : LatticeExpr<Bool> pbmask(pbmasklat);
3156 0 : if (hasPB()) {
3157 : // set bool mask: False = masked
3158 0 : pbmask = LatticeExpr<Bool> (iif(*pb() > pbmasklevel, True, False));
3159 0 : os << LogIO::DEBUG1 << "pbmask to be attached===> nfalse(pbmask.getMask())="<<nfalse(pbmask.getMask())<<endl;
3160 : }
3161 :
3162 :
3163 0 : Record thestats;
3164 0 : if (fastcalc) { // older calculation
3165 : // need to apply pbmask if present to be consistent between fastcalc = true and false.
3166 : //TempImage<Float>* tempRes = new TempImage<Float>(residual()->shape(), residual()->coordinates(), SDMaskHandler::memoryToUse());
3167 0 : auto tempRes = std::shared_ptr<TempImage<Float>>(new TempImage<Float>(residual()->shape(), residual()->coordinates(), SDMaskHandler::memoryToUse()));
3168 0 : tempRes->copyData(*residual());
3169 0 : tempRes->attachMask(pbmask);
3170 : //thestats = SDMaskHandler::calcImageStatistics(*residual(), LELmask, regionPtr, True);
3171 0 : thestats = SDMaskHandler::calcImageStatistics(*tempRes, LELmask, regionPtr, True);
3172 0 : }
3173 : else { // older way to calculate
3174 : // use the new statistic calculation algorithm
3175 0 : Vector<Bool> dummyvec;
3176 : // TT: 2018.08.01 using revised version (the older version of this is renameed to calcRobustImageStatisticsOld)
3177 0 : thestats = SDMaskHandler::calcRobustImageStatistics(*residual(), *mask(), pbmask, LELmask, regionPtr, True, dummyvec);
3178 0 : }
3179 :
3180 :
3181 : /***
3182 : ImageStatsCalculator imcalc( residual(), regionPtr, LELmask, False);
3183 :
3184 : Vector<Int> axes(2);
3185 : axes[0] = 0;
3186 : axes[1] = 1;
3187 : imcalc.setAxes(axes);
3188 : imcalc.setRobust(True);
3189 : Record thestats = imcalc.statistics();
3190 : //cout<<"thestats="<<thestats<<endl;
3191 : ***/
3192 :
3193 : //Array<Double>rmss, mads, mdns;
3194 0 : Array<Double>rmss, mads;
3195 : //thestats.get(RecordFieldId("max"), maxs);
3196 0 : thestats.get(RecordFieldId("rms"), rmss);
3197 0 : thestats.get(RecordFieldId("medabsdevmed"), mads);
3198 0 : thestats.get(RecordFieldId("median"), mdns);
3199 :
3200 : //os << LogIO::DEBUG1 << "Max : " << maxs << LogIO::POST;
3201 0 : os << LogIO::DEBUG1 << "RMS : " << rmss << LogIO::POST;
3202 0 : os << LogIO::DEBUG1 << "MAD : " << mads << LogIO::POST;
3203 :
3204 : // this for the new noise calc
3205 : //return mdns+mads*1.4826;
3206 : // this is the old noise calc
3207 0 : return mads*1.4826;
3208 0 : }
3209 :
3210 0 : void SIImageStore::printImageStats()
3211 : {
3212 0 : LogIO os( LogOrigin("SIImageStore","printImageStats",WHERE) );
3213 0 : Float minresmask=0, maxresmask=0, minres=0, maxres=0;
3214 : // findMinMax( residual()->get(), mask()->get(), minres, maxres, minresmask, maxresmask );
3215 0 : LatticeLocker lock1 (*(residual()), FileLocker::Read);
3216 0 : ArrayLattice<Bool> pixelmask(residual()->getMask());
3217 0 : if(hasMask())
3218 : {
3219 0 : LatticeLocker lock2 (*(mask()), FileLocker::Read);
3220 0 : findMinMaxLattice(*residual(), *mask() , pixelmask, maxres,maxresmask, minres, minresmask);
3221 0 : }
3222 : else
3223 : {
3224 : //LatticeExprNode pres( max( *residual() ) );
3225 0 : LatticeExprNode pres( max( iif(pixelmask,*residual(),0) ) );
3226 0 : maxres = pres.getFloat();
3227 : //LatticeExprNode pres2( min( *residual() ) );
3228 0 : LatticeExprNode pres2( min( iif(pixelmask,*residual(),0) ) );
3229 0 : minres = pres2.getFloat();
3230 0 : }
3231 :
3232 0 : os << "[" << itsImageName << "]" ;
3233 0 : os << " Peak residual (max,min) " ;
3234 0 : if( minresmask!=0.0 || maxresmask!=0.0 )
3235 0 : { os << "within mask : (" << maxresmask << "," << minresmask << ") "; }
3236 0 : os << "over full image : (" << maxres << "," << minres << ")" << LogIO::POST;
3237 :
3238 0 : os << "[" << itsImageName << "] Total Model Flux : " << getModelFlux() << LogIO::POST;
3239 :
3240 :
3241 0 : Record* regionPtr=0;
3242 0 : String LELmask("");
3243 0 : Record thestats = SDMaskHandler::calcImageStatistics(*residual(), LELmask, regionPtr, True);
3244 0 : Array<Double> maxs, mins;
3245 0 : thestats.get(RecordFieldId("max"), maxs);
3246 0 : thestats.get(RecordFieldId("min"), mins);
3247 : //os << LogIO::DEBUG1 << "Max : " << maxs << LogIO::POST;
3248 : //os << LogIO::DEBUG1 << "Min : " << mins << LogIO::POST;
3249 :
3250 0 : }
3251 :
3252 : // Calculate the total model flux
3253 0 : Float SIImageStore::getMaskSum()
3254 : {
3255 0 : LogIO os( LogOrigin("SIImageStore","getMaskSum",WHERE) );
3256 0 : LatticeLocker lock2 (*(mask()), FileLocker::Read);
3257 0 : LatticeExprNode msum( sum( *mask() ) );
3258 0 : Float masksum = msum.getFloat();
3259 :
3260 : // Float masksum = sum( mask()->get() );
3261 :
3262 0 : return masksum;
3263 0 : }
3264 :
3265 0 : Bool SIImageStore::findMinMaxLattice(const Lattice<Float>& lattice,
3266 : const Lattice<Float>& mask,
3267 : const Lattice<Bool>& pixelmask,
3268 : Float& maxAbs, Float& maxAbsMask,
3269 : Float& minAbs, Float& minAbsMask )
3270 : {
3271 :
3272 : //FOR DEGUG
3273 : //LogIO os( LogOrigin("SIImageStore","findMinMaxLattice",WHERE) );
3274 :
3275 0 : maxAbs=0.0;maxAbsMask=0.0;
3276 0 : minAbs=1e+10;minAbsMask=1e+10;
3277 0 : LatticeLocker lock1 (const_cast<Lattice<Float>& > (lattice), FileLocker::Read);
3278 0 : LatticeLocker lock2 (const_cast<Lattice<Float>& >(mask), FileLocker::Read);
3279 0 : LatticeLocker lock3 (const_cast<Lattice<Bool>& >(pixelmask), FileLocker::Read);
3280 0 : const IPosition tileShape = lattice.niceCursorShape();
3281 0 : TiledLineStepper ls(lattice.shape(), tileShape, 0);
3282 : {
3283 0 : RO_LatticeIterator<Float> li(lattice, ls);
3284 0 : RO_LatticeIterator<Float> mi(mask, ls);
3285 0 : RO_LatticeIterator<Bool> pmi(pixelmask, ls);
3286 0 : for(li.reset(),mi.reset(),pmi.reset();!li.atEnd();li++, mi++, pmi++) {
3287 0 : IPosition posMax=li.position();
3288 0 : IPosition posMin=li.position();
3289 0 : IPosition posMaxMask=li.position();
3290 0 : IPosition posMinMask=li.position();
3291 0 : Float maxVal=0.0;
3292 0 : Float minVal=0.0;
3293 0 : Float maxValMask=0.0;
3294 0 : Float minValMask=0.0;
3295 :
3296 :
3297 : // skip if lattice chunk is masked entirely.
3298 0 : if(ntrue(pmi.cursor()) > 0 ) {
3299 0 : const MaskedArray<Float> marr(li.cursor(), pmi.cursor());
3300 0 : const MaskedArray<Float> marrinmask(li.cursor() * mi.cursor(), pmi.cursor());
3301 : //minMax( minVal, maxVal, posMin, posMax, li.cursor() );
3302 0 : minMax( minVal, maxVal, posMin, posMax, marr );
3303 : //minMaxMasked(minValMask, maxValMask, posMin, posMax, li.cursor(), mi.cursor());
3304 0 : minMax(minValMask, maxValMask, posMin, posMax, marrinmask);
3305 :
3306 : //os<<"DONE minMax"<<LogIO::POST;
3307 0 : if( (maxVal) > (maxAbs) ) maxAbs = maxVal;
3308 0 : if( (maxValMask) > (maxAbsMask) ) maxAbsMask = maxValMask;
3309 :
3310 0 : if( (minVal) < (minAbs) ) minAbs = minVal;
3311 0 : if( (minValMask) < (minAbsMask) ) minAbsMask = minValMask;
3312 0 : }
3313 :
3314 0 : }
3315 0 : }
3316 :
3317 0 : return True;
3318 :
3319 :
3320 0 : }
3321 :
3322 : //////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
3323 : //////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
3324 : //////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
3325 : //////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
3326 : //////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
3327 :
3328 : //
3329 : //-------------------------------------------------------------
3330 : // Initialize the internals of the object. Perhaps other such
3331 : // initializations in the constructors can be moved here too.
3332 : //
3333 0 : void SIImageStore::init()
3334 : {
3335 0 : imageExts.resize(MAX_IMAGE_IDS);
3336 :
3337 0 : imageExts(MASK) = ".mask";
3338 0 : imageExts(PSF) = ".psf";
3339 0 : imageExts(MODEL) = ".model";
3340 0 : if (not itsIsSingleDishStore) {
3341 0 : imageExts(RESIDUAL) = ".residual";
3342 0 : imageExts(IMAGE) = ".image";
3343 : }
3344 : else {
3345 : // The initial residual image IS the single-dish image
3346 0 : imageExts(RESIDUAL) = ".image";
3347 : // Make sure we have no duplicates in the vector
3348 : // Not sure what should be done here
3349 0 : imageExts(IMAGE) = ".wrongly-deconvolved-single-dish-image";
3350 : }
3351 0 : imageExts(WEIGHT) = ".weight";
3352 0 : imageExts(SUMWT) = ".sumwt";
3353 0 : imageExts(GRIDWT) = ".gridwt";
3354 0 : imageExts(PB) = ".pb";
3355 0 : imageExts(FORWARDGRID) = ".forward";
3356 0 : imageExts(BACKWARDGRID) = ".backward";
3357 0 : imageExts(IMAGEPBCOR) = ".image.pbcor";
3358 :
3359 0 : itsParentPsf = itsPsf;
3360 0 : itsParentModel = itsModel;
3361 0 : itsParentResidual = itsResidual;
3362 0 : itsParentWeight = itsWeight;
3363 0 : itsParentImage = itsImage;
3364 0 : itsParentSumWt = itsSumWt;
3365 0 : itsParentMask = itsMask;
3366 0 : itsParentImagePBcor = itsImagePBcor;
3367 :
3368 : // cout << "parent shape : " << itsParentImageShape
3369 : // << " shape : " << itsImageShape << endl;
3370 0 : itsParentImageShape = itsImageShape;
3371 0 : itsParentCoordSys = itsCoordSys;
3372 :
3373 0 : if ( itsNFacets>1 or itsNChanChunks>1 or itsNPolChunks>1 ) {
3374 0 : itsImageShape = IPosition(4,0,0,0,0);
3375 : }
3376 :
3377 0 : itsOpened = 0;
3378 :
3379 0 : itsPSFSideLobeLevel = 0.0;
3380 0 : itsReadLock = nullptr;
3381 0 : itsDataPolRep = StokesImageUtil::UNKNOWN; // Should throw an exception if
3382 : // it is not initialized properly
3383 0 : }
3384 :
3385 :
3386 0 : void SIImageStore::regridToModelImage( ImageInterface<Float> &inputimage, Int term )
3387 : {
3388 : try
3389 : {
3390 :
3391 : //output coords
3392 0 : IPosition outshape = itsImageShape;
3393 0 : CoordinateSystem outcsys = itsCoordSys;
3394 0 : DirectionCoordinate outDirCsys = outcsys.directionCoordinate();
3395 0 : SpectralCoordinate outSpecCsys = outcsys.spectralCoordinate();
3396 :
3397 : // do regrid
3398 0 : IPosition axes(3,0, 1, 2);
3399 0 : IPosition inshape = inputimage.shape();
3400 0 : CoordinateSystem incsys = inputimage.coordinates();
3401 0 : DirectionCoordinate inDirCsys = incsys.directionCoordinate();
3402 0 : SpectralCoordinate inSpecCsys = incsys.spectralCoordinate();
3403 :
3404 0 : Vector<Int> dirAxes = CoordinateUtil::findDirectionAxes(incsys);
3405 0 : axes(0) = dirAxes(0);
3406 0 : axes(1) = dirAxes(1);
3407 0 : axes(2) = CoordinateUtil::findSpectralAxis(incsys);
3408 :
3409 : try {
3410 0 : ImageRegrid<Float> imregrid;
3411 0 : imregrid.regrid( *(model(term)), Interpolate2D::LINEAR, axes, inputimage );
3412 0 : } catch (AipsError &x) {
3413 0 : throw(AipsError("ImageRegrid error : "+ x.getMesg()));
3414 0 : }
3415 :
3416 0 : }catch(AipsError &x)
3417 : {
3418 0 : throw(AipsError("Error in regridding input model image to target coordsys : " + x.getMesg()));
3419 0 : }
3420 0 : }
3421 :
3422 : //
3423 : //---------------------------------------------------------------
3424 : //
3425 0 : void SIImageStore::makePersistent(String& fileName)
3426 : {
3427 0 : LogIO logIO(LogOrigin("SIImageStore", "makePersistent"));
3428 0 : ofstream outFile; outFile.open(fileName.c_str(),std::ofstream::out);
3429 0 : if (!outFile) logIO << "Failed to open filed \"" << fileName << "\"" << LogIO::EXCEPTION;
3430 : // String itsImageName;
3431 0 : outFile << "itsImageNameBase: " << itsImageName << endl;
3432 :
3433 : //IPosition itsImageShape;
3434 0 : outFile << "itsImageShape: " << itsImageShape.nelements() << " ";
3435 0 : for (uInt i=0;i<itsImageShape.nelements(); i++) outFile << itsImageShape(i) << " "; outFile << endl;
3436 :
3437 : // Don't know what to do with this. Looks like this gets
3438 : // filled-in from one of the images. So load this from one of the
3439 : // images if they exist?
3440 : //CoordinateSystem itsCoordSys;
3441 :
3442 : // Int itsNFacets;
3443 0 : outFile << "itsNFacets: " << itsNFacets << endl;
3444 0 : outFile << "itsUseWeight: " << itsUseWeight << endl;
3445 :
3446 :
3447 : // Misc Information to go into the header.
3448 : // Record itsMiscInfo;
3449 0 : itsMiscInfo.print(outFile);
3450 :
3451 : // std::shared_ptr<ImageInterface<Float> > itsMask, itsPsf, itsModel, itsResidual, itsWeight, itsImage, itsSumWt;
3452 : // std::shared_ptr<ImageInterface<Complex> > itsForwardGrid, itsBackwardGrid;
3453 :
3454 0 : Vector<Bool> ImageExists(MAX_IMAGE_IDS);
3455 0 : if ( ! itsMask ) ImageExists(MASK)=False;
3456 0 : if ( ! itsPsf ) ImageExists(PSF)=False;
3457 0 : if ( ! itsModel ) ImageExists(MODEL)=False;
3458 0 : if ( ! itsResidual ) ImageExists(RESIDUAL)=False;
3459 0 : if ( ! itsWeight ) ImageExists(WEIGHT)=False;
3460 0 : if ( ! itsImage ) ImageExists(IMAGE)=False;
3461 0 : if ( ! itsSumWt ) ImageExists(SUMWT)=False;
3462 0 : if ( ! itsGridWt ) ImageExists(GRIDWT)=False;
3463 0 : if ( ! itsPB ) ImageExists(PB)=False;
3464 :
3465 0 : if ( ! itsForwardGrid ) ImageExists(FORWARDGRID)=False;
3466 0 : if ( ! itsBackwardGrid ) ImageExists(BACKWARDGRID)=False;
3467 :
3468 0 : outFile << "ImagesExist: " << ImageExists << endl;
3469 0 : }
3470 : //
3471 : //---------------------------------------------------------------
3472 : //
3473 0 : void SIImageStore::recreate(String& fileName)
3474 : {
3475 0 : LogIO logIO(LogOrigin("SIImageStore", "recreate"));
3476 0 : ifstream inFile; inFile.open(fileName.c_str(),std::ofstream::out);
3477 0 : if (!inFile) logIO << "Failed to open filed \"" << fileName << "\"" << LogIO::EXCEPTION;
3478 :
3479 0 : String token;
3480 0 : inFile >> token; if (token == "itsImageNameBase:") inFile >> itsImageName;
3481 :
3482 0 : inFile >> token;
3483 0 : if (token=="itsImageShape:")
3484 : {
3485 : Int n;
3486 0 : inFile >> n;
3487 0 : itsImageShape.resize(n);
3488 0 : for (Int i=0;i<n; i++) inFile >> itsImageShape(i);
3489 : }
3490 :
3491 : // Int itsNFacets;
3492 0 : inFile >> token; if (token=="itsNFacets:") inFile >> itsNFacets;
3493 0 : inFile >> token; if (token=="itsUseWeight:") inFile >> itsUseWeight;
3494 :
3495 0 : Bool coordSysLoaded=False;
3496 0 : String itsName;
3497 : try
3498 : {
3499 0 : itsName=itsImageName+imageExts(MASK);casa::openImage(itsName, itsMask);
3500 0 : if (coordSysLoaded==False) {itsCoordSys=itsMask->coordinates(); itsMiscInfo=itsImage->miscInfo();coordSysLoaded=True;}
3501 0 : } catch (AipsIO& x) {logIO << "\"" << itsName << "\" not found." << LogIO::WARN;};
3502 : try
3503 : {
3504 0 : itsName=itsImageName+imageExts(MODEL);casa::openImage(itsName, itsModel);
3505 0 : if (coordSysLoaded==False) {itsCoordSys=itsModel->coordinates(); itsMiscInfo=itsModel->miscInfo();coordSysLoaded=True;}
3506 0 : } catch (AipsIO& x) {logIO << "\"" << itsName << "\" not found." << LogIO::WARN;};
3507 : try
3508 : {
3509 0 : itsName=itsImageName+imageExts(RESIDUAL);casa::openImage(itsName, itsResidual);
3510 0 : if (coordSysLoaded==False) {itsCoordSys=itsResidual->coordinates(); itsMiscInfo=itsResidual->miscInfo();coordSysLoaded=True;}
3511 0 : } catch (AipsIO& x) {logIO << "\"" << itsName << "\" not found." << LogIO::WARN;};
3512 : try
3513 : {
3514 0 : itsName=itsImageName+imageExts(WEIGHT);casa::openImage(itsName, itsWeight);
3515 0 : if (coordSysLoaded==False) {itsCoordSys=itsWeight->coordinates(); itsMiscInfo=itsWeight->miscInfo();coordSysLoaded=True;}
3516 0 : } catch (AipsIO& x) {logIO << "\"" << itsName << "\" not found." << LogIO::WARN;};
3517 : try
3518 : {
3519 0 : itsName=itsImageName+imageExts(IMAGE);casa::openImage(itsName, itsImage);
3520 0 : if (coordSysLoaded==False) {itsCoordSys=itsImage->coordinates(); itsMiscInfo=itsImage->miscInfo();coordSysLoaded=True;}
3521 0 : } catch (AipsIO& x) {logIO << "\"" << itsName << "\" not found." << LogIO::WARN;};
3522 : try
3523 : {
3524 0 : itsName=itsImageName+imageExts(SUMWT);casa::openImage(itsName, itsSumWt);
3525 0 : if (coordSysLoaded==False) {itsCoordSys=itsSumWt->coordinates(); itsMiscInfo=itsSumWt->miscInfo();coordSysLoaded=True;}
3526 0 : } catch (AipsIO& x) {logIO << "\"" << itsName << "\" not found." << LogIO::WARN;};
3527 : try
3528 : {
3529 0 : itsName=itsImageName+imageExts(PSF);casa::openImage(itsName, itsPsf);
3530 0 : if (coordSysLoaded==False) {itsCoordSys=itsPsf->coordinates(); itsMiscInfo=itsPsf->miscInfo();coordSysLoaded=True;}
3531 0 : } catch (AipsIO& x) {logIO << "\"" << itsName << "\" not found." << LogIO::WARN;};
3532 : try
3533 : {
3534 0 : casa::openImage(itsImageName+imageExts(FORWARDGRID), itsForwardGrid);
3535 0 : casa::openImage(itsImageName+imageExts(BACKWARDGRID), itsBackwardGrid);
3536 : }
3537 0 : catch (AipsError& x)
3538 : {
3539 0 : logIO << "Did not find forward and/or backward grid. Just say'n..." << LogIO::POST;
3540 0 : }
3541 :
3542 0 : }
3543 : //////////////
3544 0 : Bool SIImageStore::intersectComplexImage(const String& ComplexImageName){
3545 0 : Vector<Int> whichStokes(0);
3546 0 : CoordinateSystem cimageCoord = StokesImageUtil::CStokesCoord( itsCoordSys,
3547 0 : whichStokes, itsDataPolRep);
3548 :
3549 :
3550 : //cerr <<"itsDataPolRep " << itsDataPolRep << endl;
3551 :
3552 0 : CountedPtr<PagedImage<Complex> > compliantImage =nullptr;
3553 : {
3554 0 : PagedImage<Complex>inputImage(ComplexImageName);
3555 0 : IPosition theShape=itsImageShape;
3556 0 : theShape(0)=inputImage.shape()(0);
3557 0 : theShape(1)=inputImage.shape()(1);
3558 0 : CoordinateSystem inpcsys=inputImage.coordinates();
3559 0 : Vector<Double> refpix=cimageCoord.referencePixel();
3560 0 : refpix(0)+=(theShape(0)-itsImageShape(0))/2.0;
3561 0 : refpix(1)+=(theShape(1)-itsImageShape(1))/2.0;
3562 0 : cimageCoord.setReferencePixel(refpix);
3563 0 : String tmpImage=File::newUniqueName(".", "TempImage").absoluteName();
3564 0 : compliantImage=new PagedImage<Complex>(theShape, cimageCoord, tmpImage);
3565 0 : compliantImage->set(0.0);
3566 0 : IPosition iblc(theShape.nelements(),0);
3567 0 : IPosition itrc=theShape-1;
3568 : //cerr << "blc " << iblc << " trc " << itrc << " shape " << theShape << endl;
3569 0 : LCBox lbox(iblc, itrc, theShape);
3570 0 : ImageRegion imagreg(WCBox(lbox, cimageCoord));
3571 :
3572 :
3573 0 : SubImage<Complex> subim(inputImage, imagreg, false);
3574 : //cerr << "shapes " << inputImage.shape() << " sub " << subim.shape() << " compl " << compliantImage->shape() << endl;
3575 0 : compliantImage->copyData(subim);
3576 :
3577 0 : }
3578 0 : TableUtil::deleteTable(ComplexImageName);
3579 0 : compliantImage->rename(ComplexImageName);
3580 0 : return True;
3581 :
3582 0 : }
3583 :
3584 :
3585 : //////////////////////////////////////////////////////////////////////////////////////////////////////
3586 : //////////////////////////////////////////////////////////////////////////////////////////////////////
3587 :
3588 : } //# NAMESPACE CASA - END
3589 :
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