2024-05-25 12:30:29 INFO ::casa Using user configuration file /home/casatest/.casa/config.py 2024-05-25 12:30:29 INFO ::casa loaded config file : /wheeldirectory/casa-CAS-14360-2-py3.8.el8/lib/py/lib/python3.8/site-packages/casaconfig/config.py 2024-05-25 12:30:29 INFO ::casa loaded config file : /home/casatest/.casa/config.py 2024-05-25 12:30:29 INFO ::casa 2024-05-25 12:30:29 INFO ::casa config values 2024-05-25 12:30:29 INFO ::casa agg = False 2024-05-25 12:30:29 INFO ::casa cachedir = '/home/casatest/.casa' 2024-05-25 12:30:29 INFO ::casa casaconfig_verbose = 1 2024-05-25 12:30:29 INFO ::casa colors = 'Neutral' 2024-05-25 12:30:29 INFO ::casa data_auto_update = False 2024-05-25 12:30:29 INFO ::casa datapath = ['/opt/casa/data/master', '/opt/casa/data/casatestdata'] 2024-05-25 12:30:29 INFO ::casa iplog = False 2024-05-25 12:30:29 INFO ::casa iplogfile = '/home/casatest/casa6/casatasks/tests/casashell_tests/work/test_task_rerefant_casashell/ipython-20240525-123026.log' 2024-05-25 12:30:29 INFO ::casa log2term = True 2024-05-25 12:30:29 INFO ::casa logfile = '/home/casatest/casa6/casatasks/tests/casashell_tests/work/test_task_rerefant_casashell/casa-20240525-123026.log' 2024-05-25 12:30:29 INFO ::casa measures_auto_update = False 2024-05-25 12:30:29 INFO ::casa measurespath = '/opt/casa/data/master' 2024-05-25 12:30:29 INFO ::casa nogui = False 2024-05-25 12:30:29 INFO ::casa nologfile = False 2024-05-25 12:30:29 INFO ::casa nologger = True 2024-05-25 12:30:29 INFO ::casa pipeline = False 2024-05-25 12:30:29 INFO ::casa startupfile = '/home/casatest/.casa/startup.py' 2024-05-25 12:30:29 INFO ::casa user_site = False 2024-05-25 12:30:29 INFO ::casa 2024-05-25 12:30:29 WARN ::casa There was an unexpected exception when determining the installed casarundata and measures versions 2024-05-25 12:30:29 WARN ::casa Other messages will have appeared before this that may help diagnose the problem. 2024-05-25 12:30:29 WARN ::casa CASA will probably be unusable until this is fixed. 2024-05-25 12:30:29 INFO ::casa 2024-05-25 12:30:29 INFO ::casa Checking Measures tables in data repository sub-directory /opt/casa/data/master/geodetic 2024-05-25 12:30:29 INFO ::casa IERSeop2000 (version date, last date in table (UTC)): 2024/05/18/15:00, 2024/04/18/00:00:00 2024-05-25 12:30:29 INFO ::casa IERSeop97 (version date, last date in table (UTC)): 2024/05/18/15:00, 2024/04/18/00:00:00 2024-05-25 12:30:29 INFO ::casa IERSpredict (version date, last date in table (UTC)): 2024/05/24/15:00, 2024/08/22/00:00:00 2024-05-25 12:30:29 INFO ::casa TAI_UTC (version date, last date in table (UTC)): 2024/05/24/15:00, 2017/01/01/00:00:00 2024-05-25 12:30:30 INFO flagdata::::casa ########################################## 2024-05-25 12:30:30 INFO flagdata::::casa ##### Begin Task: flagdata ##### 2024-05-25 12:30:30 INFO flagdata::::casa flagdata( vis='copycal.gcal', mode='manual', autocorr=False, inpfile='', reason='any', tbuff=0.0, spw='', field='', antenna='VA01', uvrange='', timerange='', correlation='', scan='', intent='', array='', observation='', feed='', clipminmax=[], datacolumn='DATA', clipoutside=True, channelavg=False, chanbin=1, timeavg=False, timebin='0s', clipzeros=False, quackinterval=1.0, quackmode='beg', quackincrement=False, tolerance=0.0, addantenna='', lowerlimit=0.0, upperlimit=90.0, ntime='scan', combinescans=False, timecutoff=4.0, freqcutoff=3.0, timefit='line', freqfit='poly', maxnpieces=7, flagdimension='freqtime', usewindowstats='none', halfwin=1, extendflags=True, winsize=3, timedev='', freqdev='', timedevscale=5.0, freqdevscale=5.0, spectralmax=1000000.0, spectralmin=0.0, antint_ref_antenna='', minchanfrac=0.6, verbose=False, extendpols=True, growtime=50.0, growfreq=50.0, growaround=False, flagneartime=False, flagnearfreq=False, minrel=0.0, maxrel=1.0, minabs=0, maxabs=-1, spwchan=False, spwcorr=False, basecnt=False, fieldcnt=False, name='Summary', action='apply', display='', flagbackup=True, savepars=False, cmdreason='', outfile='', overwrite=True, writeflags=True ) 2024-05-25 12:30:30 INFO flagdata::::casa Backup original flags before applying new flags 2024-05-25 12:30:30 INFO AgentFlagger::open Table type is Calibration 2024-05-25 12:30:30 INFO FlagVersion::saveFlagVersion Creating new backup flag file called flagdata_1 2024-05-25 12:30:30 INFO AgentFlagger::open Table type is Calibration 2024-05-25 12:30:30 INFO flagdata::::casa Manual mode is active 2024-05-25 12:30:30 INFO FlagCalTableHandler::selectData Original CalTable has 196 rows, and selected CalTable has 7 rows 2024-05-25 12:30:30 INFO flagdata::::casa Initializing the agents 2024-05-25 12:30:30 INFO AgentFlagger::initAgents There are initially 1 agents in the list. Agents: manual 2024-05-25 12:30:30 INFO Manual::setAgentParameters autocorr is 0 2024-05-25 12:30:30 INFO AgentFlagger::initAgents There are 1 valid agents in the list. Agents: manual 2024-05-25 12:30:30 INFO flagdata::::casa Running the agentflagger tool 2024-05-25 12:30:30 INFO FlagCalTableHandler:: ------------------------------------------------------------------------------------ 2024-05-25 12:30:30 INFO FlagCalTableHandler:: Chunk = 1 [progress: 14%], Observation = 0~0, Scan = 1~1, Field = 0 (1331+30500002_0), Spw = 0, Channels = 1, CalSolutions = [ Sol1 Sol2 ], Total Rows = 1 2024-05-25 12:30:30 INFO Manual::chunkSummary => Data flagged so far 100% (2/2) 2024-05-25 12:30:30 INFO FlagCalTableHandler:: ------------------------------------------------------------------------------------ 2024-05-25 12:30:30 INFO FlagCalTableHandler:: Chunk = 2 [progress: 28%], Observation = 0~0, Scan = 2~2, Field = 1 (1445+09900002_0), Spw = 0, Channels = 1, CalSolutions = [ Sol1 Sol2 ], Total Rows = 1 2024-05-25 12:30:30 INFO Manual::chunkSummary => Data flagged so far 100% (2/2) 2024-05-25 12:30:30 INFO FlagCalTableHandler:: ------------------------------------------------------------------------------------ 2024-05-25 12:30:30 INFO FlagCalTableHandler:: Chunk = 3 [progress: 42%], Observation = 0~0, Scan = 3~3, Field = 2 (N5921_2), Spw = 0, Channels = 1, CalSolutions = [ Sol1 Sol2 ], Total Rows = 1 2024-05-25 12:30:30 INFO Manual::chunkSummary => Data flagged so far 100% (2/2) 2024-05-25 12:30:30 INFO FlagCalTableHandler:: ------------------------------------------------------------------------------------ 2024-05-25 12:30:30 INFO FlagCalTableHandler:: Chunk = 4 [progress: 57%], Observation = 0~0, Scan = 4~4, Field = 1 (1445+09900002_0), Spw = 0, Channels = 1, CalSolutions = [ Sol1 Sol2 ], Total Rows = 1 2024-05-25 12:30:30 INFO Manual::chunkSummary => Data flagged so far 100% (2/2) 2024-05-25 12:30:30 INFO FlagCalTableHandler:: ------------------------------------------------------------------------------------ 2024-05-25 12:30:30 INFO FlagCalTableHandler:: Chunk = 5 [progress: 71%], Observation = 0~0, Scan = 5~5, Field = 1 (1445+09900002_0), Spw = 0, Channels = 1, CalSolutions = [ Sol1 Sol2 ], Total Rows = 1 2024-05-25 12:30:30 INFO Manual::chunkSummary => Data flagged so far 100% (2/2) 2024-05-25 12:30:30 INFO FlagCalTableHandler:: ------------------------------------------------------------------------------------ 2024-05-25 12:30:30 INFO FlagCalTableHandler:: Chunk = 6 [progress: 85%], Observation = 0~0, Scan = 6~6, Field = 2 (N5921_2), Spw = 0, Channels = 1, CalSolutions = [ Sol1 Sol2 ], Total Rows = 1 2024-05-25 12:30:30 INFO Manual::chunkSummary => Data flagged so far 100% (2/2) 2024-05-25 12:30:30 INFO FlagCalTableHandler:: ------------------------------------------------------------------------------------ 2024-05-25 12:30:30 INFO FlagCalTableHandler:: Chunk = 7 [progress: 100%], Observation = 0~0, Scan = 7~7, Field = 1 (1445+09900002_0), Spw = 0, Channels = 1, CalSolutions = [ Sol1 Sol2 ], Total Rows = 1 2024-05-25 12:30:30 INFO Manual::chunkSummary => Data flagged so far 100% (2/2) 2024-05-25 12:30:30 INFO FlagCalTableHandler::nextChunk ==================================================================================== 2024-05-25 12:30:30 INFO Manual::tableSummary => Percentage of data flagged in table selection: 100% 2024-05-25 12:30:30 INFO AgentFlagger::run => Writing flags to the MS 2024-05-25 12:30:30 INFO flagdata::::casa Task flagdata complete. Start time: 2024-05-25 12:30:29.941506 End time: 2024-05-25 12:30:30.390409 2024-05-25 12:30:30 INFO flagdata::::casa ##### End Task: flagdata ##### 2024-05-25 12:30:30 INFO flagdata::::casa ########################################## 2024-05-25 12:30:30 INFO rerefant::::casa ########################################## 2024-05-25 12:30:30 INFO rerefant::::casa ##### Begin Task: rerefant ##### 2024-05-25 12:30:30 INFO rerefant::::casa rerefant( vis='vis.ms', tablein='copycal.gcal', caltable='out.cal', refantmode='strict', refant='VA01' ) 2024-05-25 12:30:30 INFO rerefant::calibrater::open ****Using NEW VI2-driven calibrater tool**** 2024-05-25 12:30:30 INFO rerefant::calibrater::open Opening MS: vis.ms for calibration. 2024-05-25 12:30:30 INFO rerefant::Calibrater:: Initializing nominal selection to the whole MS. 2024-05-25 12:30:30 INFO rerefant::calibrater::rerefant Beginning rerefant--(MSSelection version)------- 2024-05-25 12:30:30 INFO rerefant:::: Applying refant: VA01 refantmode = strict (flag all antennas when refant flagged) 2024-05-25 12:30:30 INFO rerefant:::: At 1995/04/13/09:21:46.0 (Spw=0, Fld=0), refant (id=0) was flagged; flagging all antennas strictly. 2024-05-25 12:30:30 INFO rerefant:::: At 1995/04/13/09:28:30.0 (Spw=0, Fld=1), refant (id=0) was flagged; flagging all antennas strictly. 2024-05-25 12:30:30 INFO rerefant:::: At 1995/04/13/09:40:30.0 (Spw=0, Fld=2), refant (id=0) was flagged; flagging all antennas strictly. 2024-05-25 12:30:30 INFO rerefant:::: At 1995/04/13/09:50:45.0 (Spw=0, Fld=1), refant (id=0) was flagged; flagging all antennas strictly. 2024-05-25 12:30:30 INFO rerefant:::: At 1995/04/13/10:22:30.0 (Spw=0, Fld=1), refant (id=0) was flagged; flagging all antennas strictly. 2024-05-25 12:30:30 INFO rerefant:::: At 1995/04/13/10:34:30.0 (Spw=0, Fld=2), refant (id=0) was flagged; flagging all antennas strictly. 2024-05-25 12:30:30 INFO rerefant:::: At 1995/04/13/10:46:15.0 (Spw=0, Fld=1), refant (id=0) was flagged; flagging all antennas strictly. 2024-05-25 12:30:30 INFO rerefant::Calibrater::reRefant Storing result in out.cal 2024-05-25 12:30:30 INFO rerefant:::: Writing solutions to table: out.cal 2024-05-25 12:30:32 INFO rerefant::::casa Task rerefant complete. Start time: 2024-05-25 12:30:30.402497 End time: 2024-05-25 12:30:31.978414 2024-05-25 12:30:32 INFO rerefant::::casa ##### End Task: rerefant ##### 2024-05-25 12:30:32 INFO rerefant::::casa ########################################## 2024-05-25 12:30:34 INFO fringefit::::casa ########################################## 2024-05-25 12:30:34 INFO fringefit::::casa ##### Begin Task: fringefit ##### 2024-05-25 12:30:34 INFO fringefit::::casa fringefit( vis='n08c1_reref.ms', caltable='fringe.cal', field='', spw='', intent='', selectdata=True, timerange='', uvrange='', antenna='', scan='', observation='', msselect='', solint='inf', combine='', refant='EF', minsnr=3.0, zerorates=False, globalsolve=True, niter=100, delaywindow=[], ratewindow=[], append=False, corrdepflags=False, corrcomb='none', docallib=False, callib='', gaintable=[], gainfield=[], interp=[], spwmap=[], paramactive=[], concatspws=True, parang=False ) 2024-05-25 12:30:34 INFO fringefit::calibrater::open ****Using NEW VI2-driven calibrater tool**** 2024-05-25 12:30:34 INFO fringefit::calibrater::open Opening MS: n08c1_reref.ms for calibration. 2024-05-25 12:30:34 INFO fringefit::Calibrater:: Initializing nominal selection to the whole MS. 2024-05-25 12:30:34 INFO fringefit::::casa Selecting data 2024-05-25 12:30:34 INFO calibrater::setdata Beginning selectvis--(MSSelection version)------- 2024-05-25 12:30:34 INFO calibrater::reset Reseting solve/apply state 2024-05-25 12:30:34 INFO Calibrater::selectvis Performing selection on MeasurementSet 2024-05-25 12:30:34 INFO Calibrater::selectvis Selection did not drop any rows 2024-05-25 12:30:34 INFO Calibrater::selectvis Frequency selection: Selecting all channels in all spws. 2024-05-25 12:30:34 INFO calibrater::setdata chanmode=none nchan=1 start=0 step=1 mStart='0km/s' mStep='0km/s' msSelect='' 2024-05-25 12:30:34 INFO calibrater::setsolve Beginning setsolve--(MSSelection version)------- 2024-05-25 12:30:34 INFO Calibrater::setsolve Arranging to SOLVE: 2024-05-25 12:30:34 INFO Calibrater::setsolve . Fringe Jones: table=fringe.cal append=false solint=inf refantmode='flex' refant='EF' minsnr=3 apmode=AP solnorm=false 2024-05-25 12:30:34 INFO calibrater::solve Beginning solve----------------------------- 2024-05-25 12:30:34 INFO Calibrater::solve The following calibration terms are arranged for apply: 2024-05-25 12:30:34 INFO Calibrater::solve . (None) 2024-05-25 12:30:34 INFO Calibrater::solve The following calibration term is arranged for solve: 2024-05-25 12:30:34 INFO Calibrater::solve . Fringe Jones: table=fringe.cal append=false solint=inf refantmode='flex' refant='EF' minsnr=3 apmode=AP solnorm=false 2024-05-25 12:30:34 INFO FreqMetaData::calcFreqMeta Derived frequency meta-info for solutions: 2024-05-25 12:30:34 INFO FreqMetaData::calcFreqMeta Selected spw=0 (nchan=1) has centroid freq = 4978365000 2024-05-25 12:30:34 INFO FreqMetaData::calcFreqMeta Selected spw=1 (nchan=1) has centroid freq = 4986365000 2024-05-25 12:30:34 INFO FreqMetaData::calcFreqMeta Selected spw=2 (nchan=1) has centroid freq = 4994365000 2024-05-25 12:30:34 INFO FreqMetaData::calcFreqMeta Selected spw=3 (nchan=1) has centroid freq = 5002365000 2024-05-25 12:30:34 INFO Calibrater::solve For solint = inf, found 8 solution intervals. 2024-05-25 12:30:34 INFO Solving for fringes for spw=0 at t=2008/03/10/17:07:31.4 2024-05-25 12:30:34 INFO Using reference antenna 0 2024-05-25 12:30:35 INFO sPok [8, 11] 2024-05-25 12:30:35 INFO Antenna 1 correlation 0 has (FFT) SNR of 484.442. 2024-05-25 12:30:35 INFO Antenna 3 correlation 0 has (FFT) SNR of 3391.69. 2024-05-25 12:30:35 INFO Antenna 1 correlation 1 has (FFT) SNR of 507.895. 2024-05-25 12:30:35 INFO Antenna 3 correlation 1 has (FFT) SNR of 3257.34. 2024-05-25 12:30:35 INFO Starting least squares optimization. 2024-05-25 12:30:36 INFO Least squares complete for correlation 0 after 5 iterations. 2024-05-25 12:30:36 INFO Least squares complete for correlation 1 after 4 iterations. 2024-05-25 12:30:36 INFO Solving for fringes for spw=1 at t=2008/03/10/17:07:31.4 2024-05-25 12:30:36 INFO Using reference antenna 0 2024-05-25 12:30:37 INFO sPok [8, 11] 2024-05-25 12:30:37 INFO Antenna 1 correlation 0 has (FFT) SNR of 864.329. 2024-05-25 12:30:37 INFO Antenna 3 correlation 0 has (FFT) SNR of 2050.59. 2024-05-25 12:30:37 INFO Antenna 1 correlation 1 has (FFT) SNR of 819.961. 2024-05-25 12:30:37 INFO Antenna 3 correlation 1 has (FFT) SNR of 3523.28. 2024-05-25 12:30:37 INFO Starting least squares optimization. 2024-05-25 12:30:37 INFO Least squares complete for correlation 0 after 4 iterations. 2024-05-25 12:30:37 INFO Least squares complete for correlation 1 after 4 iterations. 2024-05-25 12:30:38 INFO Solving for fringes for spw=2 at t=2008/03/10/17:07:31.4 2024-05-25 12:30:38 INFO Using reference antenna 0 2024-05-25 12:30:39 INFO sPok [8, 11] 2024-05-25 12:30:39 INFO Antenna 1 correlation 0 has (FFT) SNR of 871.329. 2024-05-25 12:30:39 INFO Antenna 3 correlation 0 has (FFT) SNR of 3467.03. 2024-05-25 12:30:39 INFO Antenna 1 correlation 1 has (FFT) SNR of 1702.26. 2024-05-25 12:30:39 INFO Antenna 3 correlation 1 has (FFT) SNR of 4272.89. 2024-05-25 12:30:39 INFO Starting least squares optimization. 2024-05-25 12:30:39 INFO Least squares complete for correlation 0 after 4 iterations. 2024-05-25 12:30:39 INFO Least squares complete for correlation 1 after 3 iterations. 2024-05-25 12:30:39 INFO Solving for fringes for spw=3 at t=2008/03/10/17:07:31.4 2024-05-25 12:30:39 INFO Using reference antenna 0 2024-05-25 12:30:41 INFO sPok [8, 11] 2024-05-25 12:30:41 INFO Antenna 1 correlation 0 has (FFT) SNR of 631.846. 2024-05-25 12:30:41 INFO Antenna 3 correlation 0 has (FFT) SNR of 3582.43. 2024-05-25 12:30:41 INFO Antenna 1 correlation 1 has (FFT) SNR of 448.963. 2024-05-25 12:30:41 INFO Antenna 3 correlation 1 has (FFT) SNR of 2690.42. 2024-05-25 12:30:41 INFO Starting least squares optimization. 2024-05-25 12:30:41 INFO Least squares complete for correlation 0 after 4 iterations. 2024-05-25 12:30:41 INFO Least squares complete for correlation 1 after 5 iterations. 2024-05-25 12:30:41 INFO Solving for fringes for spw=0 at t=2008/03/10/17:10:00.5 2024-05-25 12:30:41 INFO Using reference antenna 0 2024-05-25 12:30:42 INFO sPok [8, 11] 2024-05-25 12:30:42 INFO Antenna 1 correlation 0 has (FFT) SNR of 135.909. 2024-05-25 12:30:42 INFO Antenna 3 correlation 0 has (FFT) SNR of 148.651. 2024-05-25 12:30:42 INFO Antenna 1 correlation 1 has (FFT) SNR of 145.391. 2024-05-25 12:30:42 INFO Antenna 3 correlation 1 has (FFT) SNR of 129.134. 2024-05-25 12:30:42 INFO Starting least squares optimization. 2024-05-25 12:30:42 INFO Least squares complete for correlation 0 after 10 iterations. 2024-05-25 12:30:42 INFO Least squares complete for correlation 1 after 8 iterations. 2024-05-25 12:30:42 INFO Solving for fringes for spw=1 at t=2008/03/10/17:10:00.5 2024-05-25 12:30:42 INFO Using reference antenna 0 2024-05-25 12:30:43 INFO sPok [8, 11] 2024-05-25 12:30:43 INFO Antenna 1 correlation 0 has (FFT) SNR of 194.478. 2024-05-25 12:30:43 INFO Antenna 3 correlation 0 has (FFT) SNR of 138.368. 2024-05-25 12:30:43 INFO Antenna 1 correlation 1 has (FFT) SNR of 183.276. 2024-05-25 12:30:43 INFO Antenna 3 correlation 1 has (FFT) SNR of 146.912. 2024-05-25 12:30:43 INFO Starting least squares optimization. 2024-05-25 12:30:43 INFO Least squares complete for correlation 0 after 8 iterations. 2024-05-25 12:30:43 INFO Least squares complete for correlation 1 after 8 iterations. 2024-05-25 12:30:43 INFO Solving for fringes for spw=2 at t=2008/03/10/17:10:00.5 2024-05-25 12:30:43 INFO Using reference antenna 0 2024-05-25 12:30:44 INFO sPok [8, 11] 2024-05-25 12:30:44 INFO Antenna 1 correlation 0 has (FFT) SNR of 186.755. 2024-05-25 12:30:44 INFO Antenna 3 correlation 0 has (FFT) SNR of 130.867. 2024-05-25 12:30:44 INFO Antenna 1 correlation 1 has (FFT) SNR of 208.845. 2024-05-25 12:30:44 INFO Antenna 3 correlation 1 has (FFT) SNR of 139.975. 2024-05-25 12:30:44 INFO Starting least squares optimization. 2024-05-25 12:30:44 INFO Least squares complete for correlation 0 after 8 iterations. 2024-05-25 12:30:45 INFO Least squares complete for correlation 1 after 8 iterations. 2024-05-25 12:30:45 INFO Solving for fringes for spw=3 at t=2008/03/10/17:10:00.5 2024-05-25 12:30:45 INFO Using reference antenna 0 2024-05-25 12:30:45 INFO sPok [8, 11] 2024-05-25 12:30:45 INFO Antenna 1 correlation 0 has (FFT) SNR of 159.662. 2024-05-25 12:30:45 INFO Antenna 3 correlation 0 has (FFT) SNR of 132.301. 2024-05-25 12:30:45 INFO Antenna 1 correlation 1 has (FFT) SNR of 138.049. 2024-05-25 12:30:45 INFO Antenna 3 correlation 1 has (FFT) SNR of 140.275. 2024-05-25 12:30:45 INFO Starting least squares optimization. 2024-05-25 12:30:46 INFO Least squares complete for correlation 0 after 8 iterations. 2024-05-25 12:30:46 INFO Least squares complete for correlation 1 after 8 iterations. 2024-05-25 12:30:46 INFO Calibrater::solve Found good Fringe Jones solutions in 8 solution intervals. 2024-05-25 12:30:46 INFO Applying refant: EF refantmode = flex (hold alternate refants' phase constant) when refant flagged 2024-05-25 12:30:46 INFO Writing solutions to table: fringe.cal 2024-05-25 12:30:50 INFO Calibrater::solve ----- PER ANTENNA INFO ----- 2024-05-25 12:30:50 INFO Calibrater::solve ANT: 0 ANT: 1 ANT: 2 ANT: 3 ANT: 4 ANT: 5 ANT: 6 ANT: 7 ANT: 8 ANT: 9 ANT: 10 2024-05-25 12:30:50 INFO Calibrater::solve SPW: 0 [0, 0, 0, 0, 0, 0, 0, 0] [0, 0, 0, 0, 0, 0, 0, 0] [0, 0, 0, 0, 0, 0, 0, 0] [0, 0, 0, 0, 0, 0, 0, 0] [0, 0, 0, 0, 0, 0, 0, 0] [0, 0, 0, 0, 0, 0, 0, 0] [0, 0, 0, 0, 0, 0, 0, 0] [0, 0, 0, 0, 0, 0, 0, 0] [0, 0, 0, 0, 0, 0, 0, 0] [0, 0, 0, 0, 0, 0, 0, 0] [0, 0, 0, 0, 0, 0, 0, 0] 2024-05-25 12:30:50 INFO Calibrater::solve SPW: 1 [0, 0, 0, 0, 0, 0, 0, 0] [0, 0, 0, 0, 0, 0, 0, 0] [0, 0, 0, 0, 0, 0, 0, 0] [0, 0, 0, 0, 0, 0, 0, 0] [0, 0, 0, 0, 0, 0, 0, 0] [0, 0, 0, 0, 0, 0, 0, 0] [0, 0, 0, 0, 0, 0, 0, 0] [0, 0, 0, 0, 0, 0, 0, 0] [0, 0, 0, 0, 0, 0, 0, 0] [0, 0, 0, 0, 0, 0, 0, 0] [0, 0, 0, 0, 0, 0, 0, 0] 2024-05-25 12:30:50 INFO Calibrater::solve SPW: 2 [0, 0, 0, 0, 0, 0, 0, 0] [0, 0, 0, 0, 0, 0, 0, 0] [0, 0, 0, 0, 0, 0, 0, 0] [0, 0, 0, 0, 0, 0, 0, 0] [0, 0, 0, 0, 0, 0, 0, 0] [0, 0, 0, 0, 0, 0, 0, 0] [0, 0, 0, 0, 0, 0, 0, 0] [0, 0, 0, 0, 0, 0, 0, 0] [0, 0, 0, 0, 0, 0, 0, 0] [0, 0, 0, 0, 0, 0, 0, 0] [0, 0, 0, 0, 0, 0, 0, 0] 2024-05-25 12:30:50 INFO Calibrater::solve SPW: 3 [0, 0, 0, 0, 0, 0, 0, 0] [0, 0, 0, 0, 0, 0, 0, 0] [0, 0, 0, 0, 0, 0, 0, 0] [0, 0, 0, 0, 0, 0, 0, 0] [0, 0, 0, 0, 0, 0, 0, 0] [0, 0, 0, 0, 0, 0, 0, 0] [0, 0, 0, 0, 0, 0, 0, 0] [0, 0, 0, 0, 0, 0, 0, 0] [0, 0, 0, 0, 0, 0, 0, 0] [0, 0, 0, 0, 0, 0, 0, 0] [0, 0, 0, 0, 0, 0, 0, 0] 2024-05-25 12:30:50 INFO Calibrater::solve ----- PER SPW INFO ----- 2024-05-25 12:30:50 INFO Calibrater::solve expected data_unflagged above_minblperant above_minsnr 2024-05-25 12:30:50 INFO Calibrater::solve SPW: 0 [2, 2, 2, 2, 2, 2, 2, 2] [2, 2, 0, 0, 0, 0, 0, 0] [0, 0, 0, 0, 0, 0, 0, 0] [0, 0, 0, 0, 0, 0, 0, 0] 2024-05-25 12:30:50 INFO Calibrater::solve SPW: 1 [2, 2, 2, 2, 2, 2, 2, 2] [2, 2, 0, 0, 0, 0, 0, 0] [0, 0, 0, 0, 0, 0, 0, 0] [0, 0, 0, 0, 0, 0, 0, 0] 2024-05-25 12:30:50 INFO Calibrater::solve SPW: 2 [2, 2, 2, 2, 2, 2, 2, 2] [2, 2, 0, 0, 0, 0, 0, 0] [0, 0, 0, 0, 0, 0, 0, 0] [0, 0, 0, 0, 0, 0, 0, 0] 2024-05-25 12:30:50 INFO Calibrater::solve SPW: 3 [2, 2, 2, 2, 2, 2, 2, 2] [2, 2, 0, 0, 0, 0, 0, 0] [0, 0, 0, 0, 0, 0, 0, 0] [0, 0, 0, 0, 0, 0, 0, 0] 2024-05-25 12:30:50 INFO Calibrater::solve ----- GLOBAL INFO ----- 2024-05-25 12:30:50 INFO Calibrater::solve expected data_unflagged above_minblperant above_minsnr 2024-05-25 12:30:50 INFO Calibrater::solve [8, 8, 8, 8, 8, 8, 8, 8] [8, 8, 0, 0, 0, 0, 0, 0] [0, 0, 0, 0, 0, 0, 0, 0] [0, 0, 0, 0, 0, 0, 0, 0] 2024-05-25 12:30:50 INFO calibrater::solve Finished solving. 2024-05-25 12:30:50 INFO fringefit::::casa Calibration solve statistics per spw: (expected/attempted/succeeded): 2024-05-25 12:30:50 INFO fringefit::::casa Spw 0: 2/2/2 2024-05-25 12:30:50 INFO fringefit::::casa Spw 1: 2/2/2 2024-05-25 12:30:50 INFO fringefit::::casa Spw 2: 2/2/2 2024-05-25 12:30:50 INFO fringefit::::casa Spw 3: 2/2/2 2024-05-25 12:30:50 INFO fringefit::::casa Task fringefit complete. Start time: 2024-05-25 12:30:33.719165 End time: 2024-05-25 12:30:49.871343 2024-05-25 12:30:50 INFO fringefit::::casa ##### End Task: fringefit ##### 2024-05-25 12:30:50 INFO fringefit::::casa ########################################## 2024-05-25 12:30:50 INFO rerefant::::casa ########################################## 2024-05-25 12:30:50 INFO rerefant::::casa ##### Begin Task: rerefant ##### 2024-05-25 12:30:50 INFO rerefant::::casa rerefant( vis='n08c1_reref.ms', tablein='fringe.cal', caltable='reref.cal', refantmode='flex', refant='ON' ) 2024-05-25 12:30:50 INFO rerefant::calibrater::open ****Using NEW VI2-driven calibrater tool**** 2024-05-25 12:30:50 INFO rerefant::calibrater::open Opening MS: n08c1_reref.ms for calibration. 2024-05-25 12:30:50 INFO rerefant::Calibrater:: Initializing nominal selection to the whole MS. 2024-05-25 12:30:50 INFO rerefant::calibrater::rerefant Beginning rerefant--(MSSelection version)------- 2024-05-25 12:30:50 INFO rerefant:::: Applying refant: ON refantmode = flex (hold alternate refants' phase constant) when refant flagged 2024-05-25 12:30:50 INFO rerefant::Calibrater::reRefant Storing result in reref.cal 2024-05-25 12:30:50 INFO rerefant:::: Writing solutions to table: reref.cal 2024-05-25 12:30:52 INFO rerefant::::casa Task rerefant complete. Start time: 2024-05-25 12:30:49.874057 End time: 2024-05-25 12:30:51.624255 2024-05-25 12:30:52 INFO rerefant::::casa ##### End Task: rerefant ##### 2024-05-25 12:30:52 INFO rerefant::::casa ########################################## 2024-05-25 12:30:52 INFO flagdata::::casa ########################################## 2024-05-25 12:30:52 INFO flagdata::::casa ##### Begin Task: flagdata ##### 2024-05-25 12:30:52 INFO flagdata::::casa flagdata( vis='copycal.gcal', mode='manual', autocorr=False, inpfile='', reason='any', tbuff=0.0, spw='', field='', antenna='VA01', uvrange='', timerange='', correlation='', scan='1~3', intent='', array='', observation='', feed='', clipminmax=[], datacolumn='DATA', clipoutside=True, channelavg=False, chanbin=1, timeavg=False, timebin='0s', clipzeros=False, quackinterval=1.0, quackmode='beg', quackincrement=False, tolerance=0.0, addantenna='', lowerlimit=0.0, upperlimit=90.0, ntime='scan', combinescans=False, timecutoff=4.0, freqcutoff=3.0, timefit='line', freqfit='poly', maxnpieces=7, flagdimension='freqtime', usewindowstats='none', halfwin=1, extendflags=True, winsize=3, timedev='', freqdev='', timedevscale=5.0, freqdevscale=5.0, spectralmax=1000000.0, spectralmin=0.0, antint_ref_antenna='', minchanfrac=0.6, verbose=False, extendpols=True, growtime=50.0, growfreq=50.0, growaround=False, flagneartime=False, flagnearfreq=False, minrel=0.0, maxrel=1.0, minabs=0, maxabs=-1, spwchan=False, spwcorr=False, basecnt=False, fieldcnt=False, name='Summary', action='apply', display='', flagbackup=True, savepars=False, cmdreason='', outfile='', overwrite=True, writeflags=True ) 2024-05-25 12:30:52 INFO flagdata::::casa Backup original flags before applying new flags 2024-05-25 12:30:52 INFO AgentFlagger::open Table type is Calibration 2024-05-25 12:30:52 INFO FlagVersion::saveFlagVersion Creating new backup flag file called flagdata_2 2024-05-25 12:30:52 INFO AgentFlagger::open Table type is Calibration 2024-05-25 12:30:52 INFO flagdata::::casa Manual mode is active 2024-05-25 12:30:52 INFO FlagCalTableHandler::selectData Original CalTable has 196 rows, and selected CalTable has 3 rows 2024-05-25 12:30:52 INFO flagdata::::casa Initializing the agents 2024-05-25 12:30:52 INFO AgentFlagger::initAgents There are initially 1 agents in the list. Agents: manual 2024-05-25 12:30:52 INFO Manual::setAgentParameters autocorr is 0 2024-05-25 12:30:52 INFO AgentFlagger::initAgents There are 1 valid agents in the list. Agents: manual 2024-05-25 12:30:52 INFO flagdata::::casa Running the agentflagger tool 2024-05-25 12:30:52 INFO FlagCalTableHandler:: ------------------------------------------------------------------------------------ 2024-05-25 12:30:52 INFO FlagCalTableHandler:: Chunk = 1 [progress: 33%], Observation = 0~0, Scan = 1~1, Field = 0 (1331+30500002_0), Spw = 0, Channels = 1, CalSolutions = [ Sol1 Sol2 ], Total Rows = 1 2024-05-25 12:30:52 INFO Manual::chunkSummary => Data flagged so far 100% (2/2) 2024-05-25 12:30:52 INFO FlagCalTableHandler:: ------------------------------------------------------------------------------------ 2024-05-25 12:30:52 INFO FlagCalTableHandler:: Chunk = 2 [progress: 66%], Observation = 0~0, Scan = 2~2, Field = 1 (1445+09900002_0), Spw = 0, Channels = 1, CalSolutions = [ Sol1 Sol2 ], Total Rows = 1 2024-05-25 12:30:52 INFO Manual::chunkSummary => Data flagged so far 100% (2/2) 2024-05-25 12:30:52 INFO FlagCalTableHandler:: ------------------------------------------------------------------------------------ 2024-05-25 12:30:52 INFO FlagCalTableHandler:: Chunk = 3 [progress: 100%], Observation = 0~0, Scan = 3~3, Field = 2 (N5921_2), Spw = 0, Channels = 1, CalSolutions = [ Sol1 Sol2 ], Total Rows = 1 2024-05-25 12:30:52 INFO Manual::chunkSummary => Data flagged so far 100% (2/2) 2024-05-25 12:30:52 INFO FlagCalTableHandler::nextChunk ==================================================================================== 2024-05-25 12:30:52 INFO Manual::tableSummary => Percentage of data flagged in table selection: 100% 2024-05-25 12:30:52 INFO AgentFlagger::run => Writing flags to the MS 2024-05-25 12:30:52 INFO flagdata::::casa Task flagdata complete. Start time: 2024-05-25 12:30:51.801238 End time: 2024-05-25 12:30:52.109910 2024-05-25 12:30:52 INFO flagdata::::casa ##### End Task: flagdata ##### 2024-05-25 12:30:52 INFO flagdata::::casa ########################################## 2024-05-25 12:30:52 INFO rerefant::::casa ########################################## 2024-05-25 12:30:52 INFO rerefant::::casa ##### Begin Task: rerefant ##### 2024-05-25 12:30:52 INFO rerefant::::casa rerefant( vis='vis.ms', tablein='copycal.gcal', caltable='out.cal', refantmode='flex', refant='VA01,VA02' ) 2024-05-25 12:30:52 INFO rerefant::calibrater::open ****Using NEW VI2-driven calibrater tool**** 2024-05-25 12:30:52 INFO rerefant::calibrater::open Opening MS: vis.ms for calibration. 2024-05-25 12:30:52 INFO rerefant::Calibrater:: Initializing nominal selection to the whole MS. 2024-05-25 12:30:52 INFO rerefant::calibrater::rerefant Beginning rerefant--(MSSelection version)------- 2024-05-25 12:30:52 INFO rerefant:::: Applying refant: VA01 (VA02) refantmode = flex (hold alternate refants' phase constant) when refant flagged 2024-05-25 12:30:52 INFO rerefant:::: At 1995/04/13/09:21:46.0 (Spw=0, Fld=0), using refant VA02 (id=1) (alternate) 2024-05-25 12:30:52 INFO rerefant:::: NB: An alternate refant was used at least once to maintain 2024-05-25 12:30:52 INFO rerefant::::+ phase continuity where the user's preferred refant drops out. 2024-05-25 12:30:52 INFO rerefant::::+ Alternate refants are held constant in phase (_not_ zeroed) 2024-05-25 12:30:52 INFO rerefant::::+ during these periods, and the preferred refant may return at 2024-05-25 12:30:52 INFO rerefant::::+ a non-zero phase. This is generally harmless. 2024-05-25 12:30:52 INFO rerefant::Calibrater::reRefant Storing result in out.cal 2024-05-25 12:30:52 INFO rerefant:::: Writing solutions to table: out.cal 2024-05-25 12:30:54 INFO rerefant::::casa Task rerefant complete. Start time: 2024-05-25 12:30:52.112766 End time: 2024-05-25 12:30:53.682959 2024-05-25 12:30:54 INFO rerefant::::casa ##### End Task: rerefant ##### 2024-05-25 12:30:54 INFO rerefant::::casa ########################################## 2024-05-25 12:30:54 INFO flagdata::::casa ########################################## 2024-05-25 12:30:54 INFO flagdata::::casa ##### Begin Task: flagdata ##### 2024-05-25 12:30:54 INFO flagdata::::casa flagdata( vis='copycal.gcal', mode='manual', autocorr=False, inpfile='', reason='any', tbuff=0.0, spw='', field='', antenna='VA01', uvrange='', timerange='', correlation='', scan='', intent='', array='', observation='', feed='', clipminmax=[], datacolumn='DATA', clipoutside=True, channelavg=False, chanbin=1, timeavg=False, timebin='0s', clipzeros=False, quackinterval=1.0, quackmode='beg', quackincrement=False, tolerance=0.0, addantenna='', lowerlimit=0.0, upperlimit=90.0, ntime='scan', combinescans=False, timecutoff=4.0, freqcutoff=3.0, timefit='line', freqfit='poly', maxnpieces=7, flagdimension='freqtime', usewindowstats='none', halfwin=1, extendflags=True, winsize=3, timedev='', freqdev='', timedevscale=5.0, freqdevscale=5.0, spectralmax=1000000.0, spectralmin=0.0, antint_ref_antenna='', minchanfrac=0.6, verbose=False, extendpols=True, growtime=50.0, growfreq=50.0, growaround=False, flagneartime=False, flagnearfreq=False, minrel=0.0, maxrel=1.0, minabs=0, maxabs=-1, spwchan=False, spwcorr=False, basecnt=False, fieldcnt=False, name='Summary', action='apply', display='', flagbackup=True, savepars=False, cmdreason='', outfile='', overwrite=True, writeflags=True ) 2024-05-25 12:30:54 INFO flagdata::::casa Backup original flags before applying new flags 2024-05-25 12:30:54 INFO AgentFlagger::open Table type is Calibration 2024-05-25 12:30:54 INFO FlagVersion::saveFlagVersion Creating new backup flag file called flagdata_3 2024-05-25 12:30:54 INFO AgentFlagger::open Table type is Calibration 2024-05-25 12:30:54 INFO flagdata::::casa Manual mode is active 2024-05-25 12:30:54 INFO FlagCalTableHandler::selectData Original CalTable has 196 rows, and selected CalTable has 7 rows 2024-05-25 12:30:54 INFO flagdata::::casa Initializing the agents 2024-05-25 12:30:54 INFO AgentFlagger::initAgents There are initially 1 agents in the list. Agents: manual 2024-05-25 12:30:54 INFO Manual::setAgentParameters autocorr is 0 2024-05-25 12:30:54 INFO AgentFlagger::initAgents There are 1 valid agents in the list. Agents: manual 2024-05-25 12:30:54 INFO flagdata::::casa Running the agentflagger tool 2024-05-25 12:30:54 INFO FlagCalTableHandler:: ------------------------------------------------------------------------------------ 2024-05-25 12:30:54 INFO FlagCalTableHandler:: Chunk = 1 [progress: 14%], Observation = 0~0, Scan = 1~1, Field = 0 (1331+30500002_0), Spw = 0, Channels = 1, CalSolutions = [ Sol1 Sol2 ], Total Rows = 1 2024-05-25 12:30:54 INFO Manual::chunkSummary => Data flagged so far 100% (2/2) 2024-05-25 12:30:54 INFO FlagCalTableHandler:: ------------------------------------------------------------------------------------ 2024-05-25 12:30:54 INFO FlagCalTableHandler:: Chunk = 2 [progress: 28%], Observation = 0~0, Scan = 2~2, Field = 1 (1445+09900002_0), Spw = 0, Channels = 1, CalSolutions = [ Sol1 Sol2 ], Total Rows = 1 2024-05-25 12:30:54 INFO Manual::chunkSummary => Data flagged so far 100% (2/2) 2024-05-25 12:30:54 INFO FlagCalTableHandler:: ------------------------------------------------------------------------------------ 2024-05-25 12:30:54 INFO FlagCalTableHandler:: Chunk = 3 [progress: 42%], Observation = 0~0, Scan = 3~3, Field = 2 (N5921_2), Spw = 0, Channels = 1, CalSolutions = [ Sol1 Sol2 ], Total Rows = 1 2024-05-25 12:30:54 INFO Manual::chunkSummary => Data flagged so far 100% (2/2) 2024-05-25 12:30:54 INFO FlagCalTableHandler:: ------------------------------------------------------------------------------------ 2024-05-25 12:30:54 INFO FlagCalTableHandler:: Chunk = 4 [progress: 57%], Observation = 0~0, Scan = 4~4, Field = 1 (1445+09900002_0), Spw = 0, Channels = 1, CalSolutions = [ Sol1 Sol2 ], Total Rows = 1 2024-05-25 12:30:54 INFO Manual::chunkSummary => Data flagged so far 100% (2/2) 2024-05-25 12:30:54 INFO FlagCalTableHandler:: ------------------------------------------------------------------------------------ 2024-05-25 12:30:54 INFO FlagCalTableHandler:: Chunk = 5 [progress: 71%], Observation = 0~0, Scan = 5~5, Field = 1 (1445+09900002_0), Spw = 0, Channels = 1, CalSolutions = [ Sol1 Sol2 ], Total Rows = 1 2024-05-25 12:30:54 INFO Manual::chunkSummary => Data flagged so far 100% (2/2) 2024-05-25 12:30:54 INFO FlagCalTableHandler:: ------------------------------------------------------------------------------------ 2024-05-25 12:30:54 INFO FlagCalTableHandler:: Chunk = 6 [progress: 85%], Observation = 0~0, Scan = 6~6, Field = 2 (N5921_2), Spw = 0, Channels = 1, CalSolutions = [ Sol1 Sol2 ], Total Rows = 1 2024-05-25 12:30:54 INFO Manual::chunkSummary => Data flagged so far 100% (2/2) 2024-05-25 12:30:54 INFO FlagCalTableHandler:: ------------------------------------------------------------------------------------ 2024-05-25 12:30:54 INFO FlagCalTableHandler:: Chunk = 7 [progress: 100%], Observation = 0~0, Scan = 7~7, Field = 1 (1445+09900002_0), Spw = 0, Channels = 1, CalSolutions = [ Sol1 Sol2 ], Total Rows = 1 2024-05-25 12:30:54 INFO Manual::chunkSummary => Data flagged so far 100% (2/2) 2024-05-25 12:30:54 INFO FlagCalTableHandler::nextChunk ==================================================================================== 2024-05-25 12:30:54 INFO Manual::tableSummary => Percentage of data flagged in table selection: 100% 2024-05-25 12:30:54 INFO AgentFlagger::run => Writing flags to the MS 2024-05-25 12:30:54 INFO flagdata::::casa Task flagdata complete. Start time: 2024-05-25 12:30:53.821762 End time: 2024-05-25 12:30:54.084739 2024-05-25 12:30:54 INFO flagdata::::casa ##### End Task: flagdata ##### 2024-05-25 12:30:54 INFO flagdata::::casa ########################################## 2024-05-25 12:30:54 INFO rerefant::::casa ########################################## 2024-05-25 12:30:54 INFO rerefant::::casa ##### Begin Task: rerefant ##### 2024-05-25 12:30:54 INFO rerefant::::casa rerefant( vis='vis.ms', tablein='copycal.gcal', caltable='out.cal', refantmode='flex', refant='VA01,VA02' ) 2024-05-25 12:30:54 INFO rerefant::calibrater::open ****Using NEW VI2-driven calibrater tool**** 2024-05-25 12:30:54 INFO rerefant::calibrater::open Opening MS: vis.ms for calibration. 2024-05-25 12:30:54 INFO rerefant::Calibrater:: Initializing nominal selection to the whole MS. 2024-05-25 12:30:54 INFO rerefant::calibrater::rerefant Beginning rerefant--(MSSelection version)------- 2024-05-25 12:30:54 INFO rerefant:::: Applying refant: VA01 (VA02) refantmode = flex (hold alternate refants' phase constant) when refant flagged 2024-05-25 12:30:54 INFO rerefant:::: At 1995/04/13/09:21:46.0 (Spw=0, Fld=0), using refant VA02 (id=1) (alternate) 2024-05-25 12:30:54 INFO rerefant:::: NB: An alternate refant was used at least once to maintain 2024-05-25 12:30:54 INFO rerefant::::+ phase continuity where the user's preferred refant drops out. 2024-05-25 12:30:54 INFO rerefant::::+ Alternate refants are held constant in phase (_not_ zeroed) 2024-05-25 12:30:54 INFO rerefant::::+ during these periods, and the preferred refant may return at 2024-05-25 12:30:54 INFO rerefant::::+ a non-zero phase. This is generally harmless. 2024-05-25 12:30:54 INFO rerefant::Calibrater::reRefant Storing result in out.cal 2024-05-25 12:30:54 INFO rerefant:::: Writing solutions to table: out.cal 2024-05-25 12:30:56 INFO rerefant::::casa Task rerefant complete. Start time: 2024-05-25 12:30:54.087320 End time: 2024-05-25 12:30:55.682231 2024-05-25 12:30:56 INFO rerefant::::casa ##### End Task: rerefant ##### 2024-05-25 12:30:56 INFO rerefant::::casa ########################################## 2024-05-25 12:30:56 INFO rerefant::::casa ########################################## 2024-05-25 12:30:56 INFO rerefant::::casa ##### Begin Task: rerefant ##### 2024-05-25 12:30:56 INFO rerefant::::casa rerefant( vis='vis.ms', tablein='copycal.gcal', caltable='out.cal', refantmode='flex', refant='VA01' ) 2024-05-25 12:30:56 INFO rerefant::calibrater::open ****Using NEW VI2-driven calibrater tool**** 2024-05-25 12:30:56 INFO rerefant::calibrater::open Opening MS: vis.ms for calibration. 2024-05-25 12:30:56 INFO rerefant::Calibrater:: Initializing nominal selection to the whole MS. 2024-05-25 12:30:56 INFO rerefant::calibrater::rerefant Beginning rerefant--(MSSelection version)------- 2024-05-25 12:30:56 INFO rerefant:::: Applying refant: VA01 refantmode = flex (hold alternate refants' phase constant) when refant flagged 2024-05-25 12:30:56 INFO rerefant::Calibrater::reRefant Storing result in out.cal 2024-05-25 12:30:56 INFO rerefant:::: Writing solutions to table: out.cal 2024-05-25 12:30:57 INFO rerefant::::casa Task rerefant complete. Start time: 2024-05-25 12:30:55.817053 End time: 2024-05-25 12:30:57.118354 2024-05-25 12:30:57 INFO rerefant::::casa ##### End Task: rerefant ##### 2024-05-25 12:30:57 INFO rerefant::::casa ########################################## 2024-05-25 12:30:57 INFO flagdata::::casa ########################################## 2024-05-25 12:30:57 INFO flagdata::::casa ##### Begin Task: flagdata ##### 2024-05-25 12:30:57 INFO flagdata::::casa flagdata( vis='copycal.gcal', mode='manual', autocorr=False, inpfile='', reason='any', tbuff=0.0, spw='', field='', antenna='VA01', uvrange='', timerange='', correlation='', scan='', intent='', array='', observation='', feed='', clipminmax=[], datacolumn='DATA', clipoutside=True, channelavg=False, chanbin=1, timeavg=False, timebin='0s', clipzeros=False, quackinterval=1.0, quackmode='beg', quackincrement=False, tolerance=0.0, addantenna='', lowerlimit=0.0, upperlimit=90.0, ntime='scan', combinescans=False, timecutoff=4.0, freqcutoff=3.0, timefit='line', freqfit='poly', maxnpieces=7, flagdimension='freqtime', usewindowstats='none', halfwin=1, extendflags=True, winsize=3, timedev='', freqdev='', timedevscale=5.0, freqdevscale=5.0, spectralmax=1000000.0, spectralmin=0.0, antint_ref_antenna='', minchanfrac=0.6, verbose=False, extendpols=True, growtime=50.0, growfreq=50.0, growaround=False, flagneartime=False, flagnearfreq=False, minrel=0.0, maxrel=1.0, minabs=0, maxabs=-1, spwchan=False, spwcorr=False, basecnt=False, fieldcnt=False, name='Summary', action='apply', display='', flagbackup=True, savepars=False, cmdreason='', outfile='', overwrite=True, writeflags=True ) 2024-05-25 12:30:57 INFO flagdata::::casa Backup original flags before applying new flags 2024-05-25 12:30:57 INFO AgentFlagger::open Table type is Calibration 2024-05-25 12:30:57 INFO FlagVersion::saveFlagVersion Creating new backup flag file called flagdata_4 2024-05-25 12:30:57 INFO AgentFlagger::open Table type is Calibration 2024-05-25 12:30:57 INFO flagdata::::casa Manual mode is active 2024-05-25 12:30:57 INFO FlagCalTableHandler::selectData Original CalTable has 196 rows, and selected CalTable has 7 rows 2024-05-25 12:30:57 INFO flagdata::::casa Initializing the agents 2024-05-25 12:30:57 INFO AgentFlagger::initAgents There are initially 1 agents in the list. Agents: manual 2024-05-25 12:30:57 INFO Manual::setAgentParameters autocorr is 0 2024-05-25 12:30:57 INFO AgentFlagger::initAgents There are 1 valid agents in the list. Agents: manual 2024-05-25 12:30:57 INFO flagdata::::casa Running the agentflagger tool 2024-05-25 12:30:58 INFO FlagCalTableHandler:: ------------------------------------------------------------------------------------ 2024-05-25 12:30:58 INFO FlagCalTableHandler:: Chunk = 1 [progress: 14%], Observation = 0~0, Scan = 1~1, Field = 0 (1331+30500002_0), Spw = 0, Channels = 1, CalSolutions = [ Sol1 Sol2 ], Total Rows = 1 2024-05-25 12:30:58 INFO Manual::chunkSummary => Data flagged so far 100% (2/2) 2024-05-25 12:30:58 INFO FlagCalTableHandler:: ------------------------------------------------------------------------------------ 2024-05-25 12:30:58 INFO FlagCalTableHandler:: Chunk = 2 [progress: 28%], Observation = 0~0, Scan = 2~2, Field = 1 (1445+09900002_0), Spw = 0, Channels = 1, CalSolutions = [ Sol1 Sol2 ], Total Rows = 1 2024-05-25 12:30:58 INFO Manual::chunkSummary => Data flagged so far 100% (2/2) 2024-05-25 12:30:58 INFO FlagCalTableHandler:: ------------------------------------------------------------------------------------ 2024-05-25 12:30:58 INFO FlagCalTableHandler:: Chunk = 3 [progress: 42%], Observation = 0~0, Scan = 3~3, Field = 2 (N5921_2), Spw = 0, Channels = 1, CalSolutions = [ Sol1 Sol2 ], Total Rows = 1 2024-05-25 12:30:58 INFO Manual::chunkSummary => Data flagged so far 100% (2/2) 2024-05-25 12:30:58 INFO FlagCalTableHandler:: ------------------------------------------------------------------------------------ 2024-05-25 12:30:58 INFO FlagCalTableHandler:: Chunk = 4 [progress: 57%], Observation = 0~0, Scan = 4~4, Field = 1 (1445+09900002_0), Spw = 0, Channels = 1, CalSolutions = [ Sol1 Sol2 ], Total Rows = 1 2024-05-25 12:30:58 INFO Manual::chunkSummary => Data flagged so far 100% (2/2) 2024-05-25 12:30:58 INFO FlagCalTableHandler:: ------------------------------------------------------------------------------------ 2024-05-25 12:30:58 INFO FlagCalTableHandler:: Chunk = 5 [progress: 71%], Observation = 0~0, Scan = 5~5, Field = 1 (1445+09900002_0), Spw = 0, Channels = 1, CalSolutions = [ Sol1 Sol2 ], Total Rows = 1 2024-05-25 12:30:58 INFO Manual::chunkSummary => Data flagged so far 100% (2/2) 2024-05-25 12:30:58 INFO FlagCalTableHandler:: ------------------------------------------------------------------------------------ 2024-05-25 12:30:58 INFO FlagCalTableHandler:: Chunk = 6 [progress: 85%], Observation = 0~0, Scan = 6~6, Field = 2 (N5921_2), Spw = 0, Channels = 1, CalSolutions = [ Sol1 Sol2 ], Total Rows = 1 2024-05-25 12:30:58 INFO Manual::chunkSummary => Data flagged so far 100% (2/2) 2024-05-25 12:30:58 INFO FlagCalTableHandler:: ------------------------------------------------------------------------------------ 2024-05-25 12:30:58 INFO FlagCalTableHandler:: Chunk = 7 [progress: 100%], Observation = 0~0, Scan = 7~7, Field = 1 (1445+09900002_0), Spw = 0, Channels = 1, CalSolutions = [ Sol1 Sol2 ], Total Rows = 1 2024-05-25 12:30:58 INFO Manual::chunkSummary => Data flagged so far 100% (2/2) 2024-05-25 12:30:58 INFO FlagCalTableHandler::nextChunk ==================================================================================== 2024-05-25 12:30:58 INFO Manual::tableSummary => Percentage of data flagged in table selection: 100% 2024-05-25 12:30:58 INFO AgentFlagger::run => Writing flags to the MS 2024-05-25 12:30:58 INFO flagdata::::casa Task flagdata complete. Start time: 2024-05-25 12:30:57.253931 End time: 2024-05-25 12:30:57.607625 2024-05-25 12:30:58 INFO flagdata::::casa ##### End Task: flagdata ##### 2024-05-25 12:30:58 INFO flagdata::::casa ########################################## 2024-05-25 12:30:58 INFO rerefant::::casa ########################################## 2024-05-25 12:30:58 INFO rerefant::::casa ##### Begin Task: rerefant ##### 2024-05-25 12:30:58 INFO rerefant::::casa rerefant( vis='vis.ms', tablein='copycal.gcal', caltable='out.cal', refantmode='strict', refant='VA01, VA02' ) 2024-05-25 12:30:58 INFO rerefant::calibrater::open ****Using NEW VI2-driven calibrater tool**** 2024-05-25 12:30:58 INFO rerefant::calibrater::open Opening MS: vis.ms for calibration. 2024-05-25 12:30:58 INFO rerefant::Calibrater:: Initializing nominal selection to the whole MS. 2024-05-25 12:30:58 INFO rerefant::calibrater::rerefant Beginning rerefant--(MSSelection version)------- 2024-05-25 12:30:58 INFO rerefant:::: Applying refant: VA01 (VA02) refantmode = strict (flag all antennas when refant flagged) 2024-05-25 12:30:58 INFO rerefant:::: At 1995/04/13/09:21:46.0 (Spw=0, Fld=0), refant (id=0) was flagged; flagging all antennas strictly. 2024-05-25 12:30:58 INFO rerefant:::: At 1995/04/13/09:28:30.0 (Spw=0, Fld=1), refant (id=0) was flagged; flagging all antennas strictly. 2024-05-25 12:30:58 INFO rerefant:::: At 1995/04/13/09:40:30.0 (Spw=0, Fld=2), refant (id=0) was flagged; flagging all antennas strictly. 2024-05-25 12:30:58 INFO rerefant:::: At 1995/04/13/09:50:45.0 (Spw=0, Fld=1), refant (id=0) was flagged; flagging all antennas strictly. 2024-05-25 12:30:58 INFO rerefant:::: At 1995/04/13/10:22:30.0 (Spw=0, Fld=1), refant (id=0) was flagged; flagging all antennas strictly. 2024-05-25 12:30:58 INFO rerefant:::: At 1995/04/13/10:34:30.0 (Spw=0, Fld=2), refant (id=0) was flagged; flagging all antennas strictly. 2024-05-25 12:30:58 INFO rerefant:::: At 1995/04/13/10:46:15.0 (Spw=0, Fld=1), refant (id=0) was flagged; flagging all antennas strictly. 2024-05-25 12:30:58 INFO rerefant::Calibrater::reRefant Storing result in out.cal 2024-05-25 12:30:58 INFO rerefant:::: Writing solutions to table: out.cal 2024-05-25 12:30:59 INFO rerefant::::casa Task rerefant complete. Start time: 2024-05-25 12:30:57.610366 End time: 2024-05-25 12:30:59.175007 2024-05-25 12:30:59 INFO rerefant::::casa ##### End Task: rerefant ##### 2024-05-25 12:30:59 INFO rerefant::::casa ########################################## 2024-05-25 12:30:59 INFO rerefant::::casa ########################################## 2024-05-25 12:30:59 INFO rerefant::::casa ##### Begin Task: rerefant ##### 2024-05-25 12:30:59 INFO rerefant::::casa rerefant( vis='vis.ms', tablein='copycal.gcal', caltable='out.cal', refantmode='strict', refant='VA01' ) 2024-05-25 12:30:59 INFO rerefant::calibrater::open ****Using NEW VI2-driven calibrater tool**** 2024-05-25 12:30:59 INFO rerefant::calibrater::open Opening MS: vis.ms for calibration. 2024-05-25 12:30:59 INFO rerefant::Calibrater:: Initializing nominal selection to the whole MS. 2024-05-25 12:30:59 INFO rerefant::calibrater::rerefant Beginning rerefant--(MSSelection version)------- 2024-05-25 12:30:59 INFO rerefant:::: Applying refant: VA01 refantmode = strict (flag all antennas when refant flagged) 2024-05-25 12:30:59 INFO rerefant::Calibrater::reRefant Storing result in out.cal 2024-05-25 12:30:59 INFO rerefant:::: Writing solutions to table: out.cal 2024-05-25 12:31:01 INFO rerefant::::casa Task rerefant complete. Start time: 2024-05-25 12:30:59.287940 End time: 2024-05-25 12:31:01.086354 2024-05-25 12:31:01 INFO rerefant::::casa ##### End Task: rerefant ##### 2024-05-25 12:31:01 INFO rerefant::::casa ########################################## Using user configuration file /home/casatest/.casa/config.py Using matplotlib backend: agg CASA 6.6.1.14a14360.dev2 -- Common Astronomy Software Applications [6.6.1.14a14360.dev2] 'utils' object has no attribute 'measurespath' There was an unexpected exception when determining the installed casarundata and measures versions Other messages will have appeared before this that may help diagnose the problem. CASA will probably be unusable until this is fixed. Running tests... ---------------------------------------------------------------------- ....... ---------------------------------------------------------------------- Ran 7 tests in 32.409s OK Generating XML reports...